TaskOperations.hh File Reference

An operation to perform on a packer task – usually, by a PackerTaskFactory right after the task's construction This is an incomplete list. Freely define your own TaskOperation and hand it to a PackerTaskFactory. More...

#include <core/pack/task/operation/TaskOperation.hh>
#include <core/pack/task/operation/TaskOperations.fwd.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/pack/task/PackerTask.fwd.hh>
#include <core/pack/task/ResfileReader.fwd.hh>
#include <core/pack/rotamer_set/RotamerCouplings.fwd.hh>
#include <core/pack/rotamer_set/RotamerLinks.fwd.hh>
#include <core/pack/rotamer_set/RotamerSetOperation.fwd.hh>
#include <core/pack/task/RotamerSampleOptions.hh>
#include <core/types.hh>
#include <utility/tag/Tag.fwd.hh>
#include <string>
#include <utility/vector1.hh>

Go to the source code of this file.

Classes
class	core::pack::task::operation::RestrictToRepacking
class	core::pack::task::operation::RestrictResidueToRepacking
	RestrictResidueToRepacking. More...
class	core::pack::task::operation::RestrictAbsentCanonicalAAS
class	core::pack::task::operation::DisallowIfNonnative
	DisallowIfNonnative allows you to define what residues are NOT allowed in packing unless that residue is present in the input. Behaves like RestrictAbsentCanonicalAAS and NOTAA except will allow a resitricted residue at a position if it is there to begin with at the time of Task creation. Will do all residues unless otherwise defined by selection syntax below. More...
class	core::pack::task::operation::RotamerExplosion
	rotamer explosion for a residue More...
class	core::pack::task::operation::InitializeFromCommandline
class	core::pack::task::operation::InitializeExtraRotsFromCommandline
class	core::pack::task::operation::IncludeCurrent
class	core::pack::task::operation::ExtraRotamersGeneric
class	core::pack::task::operation::ReadResfile
class	core::pack::task::operation::ReadResfileAndObeyLengthEvents
	written by flo, feb 2011 class that can apply a resfile to a pose that had its length changed at some point in a protocol. A LengthEventCollector must be set in the pose's observer cache for this to work properly More...
class	core::pack::task::operation::SetRotamerCouplings
class	core::pack::task::operation::SetRotamerLinks
class	core::pack::task::operation::AppendRotamer
	when a PackerTask is created by the Factory, the RotamerOperation will be given to it More...
class	core::pack::task::operation::AppendRotamerSet
	when a PackerTask is created by the Factory, the RotamerSetOperation will be given to it More...
class	core::pack::task::operation::AppendResidueRotamerSet
	Apply rotamerSetOperation to only the rotamerSet for the given residue. More...
class	core::pack::task::operation::PreserveCBeta
class	core::pack::task::operation::PreventRepacking
	PreventRepacking allows you to prevent repacking (NATRO behavior) through the Factory. Useful if you do not know the residue numbers when the resfile is created. Note that this is unlike RestrictToRepacking; you have to specify which residues. If PreventRepacking worked on the entire Task you'd have a do-nothing task. More...
class	core::pack::task::operation::RestrictYSDesign
	RestrictYSDesign restricts positions to a binary Tyr/Ser alphabet. More...
class	core::pack::task::operation::ExtraRotamers
	ExtraRotamer for a residue. You know, -ex1, -ex2, all that. More...
class	core::pack::task::operation::ExtraChiCutoff
	ExtraChiCutoff (correponding to flag "-extrachi_cutoff <float>" ) More...

Namespaces
	core
	A class for defining atom parameters, known as atom_types.
	core::pack
	core::pack::task
	core::pack::task::operation

Constant Groups
	core
	A class for defining atom parameters, known as atom_types.
	core::pack
	core::pack::task
	core::pack::task::operation

Detailed Description

An operation to perform on a packer task – usually, by a PackerTaskFactory right after the task's construction This is an incomplete list. Freely define your own TaskOperation and hand it to a PackerTaskFactory.

Author

Andrew Leaver-Fay (leave.nosp@m.rfa@.nosp@m.email.nosp@m..unc.nosp@m..edu)

Definition in file TaskOperations.hh.