#include <SecstructSRFD.hh>

Inheritance diagram for core::fragment::SecstructSRFD:

Collaboration diagram for core::fragment::SecstructSRFD:

Public Member Functions
	SecstructSRFD (char secstruct= 'X', char sequence= 'X')

SingleResidueFragDataOP	clone () const

virtual SingleResidueFragDataOP	create () const
	create a new instance of this object More...

virtual char	secstruct () const
	get secstruct for this position More...

void	set_secstruct (char const ss)

virtual bool	apply (pose::Pose &, Size seq_pos) const
	insert fragment_data into pose at position seq_pos More...

virtual bool	apply (kinematics::MoveMap const &, pose::Pose &pose, Size const seqpos) const
	apply secondary structure fragment data to the pose, movemap has no effect More...

virtual bool	apply_ss (std::string &, Size seq_pos) const
	insert fragment_data sec-struct into ss-string at position seq_pos More...

virtual bool	steal (pose::Pose const &, Size seq_pos)
	insert fragment_data into pose at position seq_pos More...

virtual bool	is_compatible (SingleResidueFragData const &) const
	check weather SRFD applies to same dofs and is of same type More...

virtual bool	is_applicable (kinematics::MoveMap const &, Size seq_pos) const
	check whether dofs can be moved More...

virtual void	show (std::ostream &out) const

virtual void	read_data (std::istream &in)
	Default implementation: noop. More...

virtual std::string	type () const

Public Member Functions inherited from core::fragment::SingleResidueFragData
virtual	~SingleResidueFragData ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...

	SingleResidueFragData (char sequence)

	SingleResidueFragData ()

virtual bool	apply (pose::Pose &, Size const intra_frame_pos, Frame const &) const
	insert fragment_data into pose at position given by Frame.seqpos( intra_frame_pos ); More...

virtual bool	apply (kinematics::MoveMap const &movemap, pose::Pose &pose, Size const intra_frame_pos, Frame const &frame) const
	insert fragment_data into pose at position given by Frame.seqpos( intra_frame_pos ) for dofs that are allowed to move in the MoveMap More...

virtual bool	apply_ss (std::string &, Size intra_frame_pos, Frame const &) const
	insert fragment_data sec-struct into ss-string at position seq_pos More...

virtual bool	steal (pose::Pose const &, Size intra_frame_pos, Frame const &)
	insert fragment_data into pose at position seq_pos More...

virtual bool	is_applicable (kinematics::MoveMap const &, Size intra_frame_pos, Frame const &) const
	check weather dofs can be moved More...

void	set_sequence (char const sequence)

char	sequence () const

Static Public Member Functions
static std::string	_static_type_name ()

Static Public Member Functions inherited from core::fragment::SingleResidueFragData
static std::string	_static_type_name ()

Private Types
typedef SingleResidueFragData	Parent

Private Attributes
char	secstruct_

Additional Inherited Members
Protected Attributes inherited from core::fragment::SingleResidueFragData
char	sequence_

Detailed Description

Definition at line 45 of file SecstructSRFD.hh.

Member Typedef Documentation

typedef SingleResidueFragData core::fragment::SecstructSRFD::Parent

private

Definition at line 46 of file SecstructSRFD.hh.

Constructor & Destructor Documentation

core::fragment::SecstructSRFD::SecstructSRFD	(	char	secstruct = `'X'`,
		char	sequence = `'X'`
	)

inline

Definition at line 48 of file SecstructSRFD.hh.

Referenced by clone(), and create().

Member Function Documentation

static std::string core::fragment::SecstructSRFD::_static_type_name ( )

inlinestatic

Definition at line 98 of file SecstructSRFD.hh.

Referenced by core::fragment::FragFactory::FragFactory().

bool core::fragment::SecstructSRFD::apply	(	pose::Pose &	,
		Size	seq_pos
	)		const

virtual

insert fragment_data into pose at position seq_pos

Implements core::fragment::SingleResidueFragData.

Reimplemented in core::fragment::BBTorsionSRFD, and core::fragment::BBTorsionAndAnglesSRFD.

Definition at line 50 of file SecstructSRFD.cc.

References core::pose::Pose::set_secstruct().

Referenced by core::fragment::IndependentBBTorsionSRFD::apply(), and core::fragment::BBTorsionSRFD::apply().

bool core::fragment::SecstructSRFD::apply	(	kinematics::MoveMap const &	,
		pose::Pose &	pose,
		Size const	seqpos
	)		const

virtual

apply secondary structure fragment data to the pose, movemap has no effect

Remarks: In this version of apply(), by convention MoveMap has no effect because a setting for sec.struct currently does not exist within the map.