#include <MPIMultiCommJobDistributor.hh>

Inheritance diagram for protocols::jd2::MPIMultiCommJobDistributor:

Collaboration diagram for protocols::jd2::MPIMultiCommJobDistributor:

Public Member Functions
virtual core::Size	get_new_job_id ()
	dummy for master/slave version More...

virtual void	job_succeeded (core::pose::Pose &pose, core::Real run_time)
	overloaded to suppress message from higher-rank replicas More...

virtual void	job_failed (core::pose::Pose &pose, bool)
	overloaded to suppress message from higher-rank replicas More...

core::Size	sub_rank ()

Public Member Functions inherited from protocols::jd2::MPIFileBufJobDistributor
virtual	~MPIFileBufJobDistributor ()
	dtor WARNING WARNING! SINGLETONS' DESTRUCTORS ARE NEVER CALLED IN MINI! DO NOT TRY TO PUT THINGS IN THIS FUNCTION! here's a nice link explaining why: http://www.research.ibm.com/designpatterns/pubs/ph-jun96.txt More...

core::Size	increment_client_rank ()

core::Size	min_client_rank () const
	return rank of first worker process (there might be more dedicated processes, e.g., ArchiveManager...) More...

virtual void	go (protocols::moves::MoverOP mover)
	dummy for master/slave version More...

virtual void	mark_current_job_id_for_repetition ()
	dummy for master/slave version More...

virtual void	remove_bad_inputs_from_job_list ()
	dummy for master/slave version More...

Public Member Functions inherited from protocols::jd2::JobDistributor
virtual	~JobDistributor ()

void	go (protocols::moves::MoverOP mover, JobOutputterOP jo)
	invokes go, after setting JobOutputter More...

JobOP	current_job () const
	Movers may ask their controlling job distributor for information about the current job. They may also load information into this job for later output. More...

std::string	current_output_name () const
	Movers may ask their controlling job distributor for the output name as defined by the Job and JobOutputter. More...

JobOutputterOP	job_outputter () const
	Movers (or derived classes) may ask for the JobOutputter. More...

void	set_job_outputter (const JobOutputterOP &new_job_outputter)
	Movers (or derived classes) may ask for the JobOutputter. More...

JobInputterOP	job_inputter () const
	JobInputter access. More...

virtual void	mpi_finalize (bool finalize)
	should the go() function call MPI_finalize()? It probably should, this is true by default. More...

JobInputterInputSource::Enum	job_inputter_input_source () const
	The input source for the current JobInputter. More...

virtual void	restart ()

core::Size	total_nr_jobs () const

core::Size	current_job_id () const
	integer access - which job are we on? More...

std::string	get_current_batch () const
	what is the current batch ? — name refers to the flag-file used for this batch More...

virtual void	add_batch (std::string const &, core::Size id=0)
	add a new batch ( name will be interpreted as flag_file ) More...

core::Size	current_batch_id () const
	what is the current batch number ? — refers to position in batches_ More...

Protected Member Functions
	MPIMultiCommJobDistributor (core::Size sub_size)
	ctor is protected; singleton pattern More...

virtual void	handle_interrupt ()
	This function got called when job is not yet finished and got termitated abnormaly (ctrl-c, kill etc). when implimenting it in subclasses make sure to delete all in-progress-data that your job spawn. More...

Protected Member Functions inherited from protocols::jd2::MPIFileBufJobDistributor
	MPIFileBufJobDistributor ()
	ctor is protected; singleton pattern More...

	MPIFileBufJobDistributor (core::Size master_rank, core::Size file_buf_rank, core::Size min_client_rank, bool start_empty=false)
	protected ctor for child-classes More...

virtual bool	process_message (core::Size msg_tag, core::Size slave_rank, core::Size slave_job_id, core::Size slave_batch_id, core::Real runtime)

virtual bool	next_batch ()
	switch current_batch_id_ to next batch More...

void	master_go (protocols::moves::MoverOP mover)
	Handles the receiving of job requests and the sending of job ids to and from slaves. More...

core::Size	master_get_new_job_id ()
	Always returns zero, simply increments next_job_to_assign_ to the next job that should be run based on what has been completeted and the overwrite flags. More...

core::Size	slave_get_new_job_id ()
	requests, receives, and returns a new job id from the master node or returns the current job id if the repeat_job_ flag is set to true More...

void	master_mark_current_job_id_for_repetition ()
	This should never be called as this is handled internally by the slave nodes, it utility_exits. More...

void	slave_mark_current_job_id_for_repetition ()
	Sets the repeat_job_ flag to true. More...

void	master_remove_bad_inputs_from_job_list ()
	Simply increments next_job_to_assign_ to the next job that should be run based on what has been completed and if the input job tag of the job marked as having bad input. More...

void	slave_remove_bad_inputs_from_job_list ()
	Sends a message to the head node that contains the id of a job that had bad input. More...

void	master_job_succeeded (core::pose::Pose &pose)
	This should never be called as this is handled internally by the slave nodes, it utility_exits. More...

void	slave_job_succeeded (core::pose::Pose &pose)
	Sends a message to the head node upon successful job completion to avoid output interleaving. More...

void	slave_to_master (core::Size tag)
	send a message to master More...

void	send_job_to_slave (core::Size slave_rank)
	called by master to send and by slave to receive job More...

core::Size	rank () const
	return rank of this process More...

core::Size	master_rank () const
	return rank of master process ( where JobDistributor is running ) More...

core::Size	file_buf_rank () const
	return rank of file-buffer process ( where output data (via ozstream )is handled ) More...

core::Size	number_of_processors ()
	how many processes — this includes dedicated processes More...

core::Size	n_rank ()
	how many processes — this includes dedicated processes More...

core::Size	n_worker ()
	how many workers — important to keep track during spin-down process More...

void	set_n_worker (core::Size setting)
	how many workers — important to keep track during spin-down process More...

virtual void	mark_job_as_completed (core::Size job_id, core::Size batch_id, core::Real runtime)
	marks job as completed in joblist More...

virtual void	mark_job_as_bad (core::Size job_id, core::Size batch_id)
	marks job as bad in joblist More...

void	eat_signal (core::Size signal, int source)
	receive a certain signal and ignore it.... this is needed, for instance, when MPIArchiveJobDistributor triggers an ADD_BATCH signal by sending QUEUE_EMPTY to the ArchiveManager... More...

Protected Member Functions inherited from protocols::jd2::JobDistributor
	JobDistributor ()
	Singleton instantiation pattern; Derived classes will call default ctor, but their ctors, too must be protected (and the JDFactory must be their friend.) More...

	JobDistributor (bool empty)
	MPIArchiveJobDistributor starts with an empty job-list... More...

void	go_main (protocols::moves::MoverOP mover)
	Non-virtual get-job, run it, & output loop. This function is pretty generic and your subclass may be able to use it. It is NOT virtual - this implementation can be shared by (at least) the simple FileSystemJobDistributor, the MPIWorkPoolJobDistributor, and the MPIWorkPartitionJobDistributor. Do not feel that you need to use it as-is in your class - but DO plan on implementing all its functionality! More...

Jobs const &	get_jobs () const
	Read access to private data for derived classes. More...

void	mark_job_as_completed (core::Size job_id, core::Real run_time)
	Jobs is the container of Job objects need non-const to mark Jobs as completed on Master in MPI-JobDistributor. More...

void	mark_job_as_bad (core::Size job_id)

ParserOP	parser () const
	Parser access. More...

void	begin_critical_section ()

void	end_critical_section ()

bool	obtain_new_job (bool re_consider_current_job=false)
	this function updates the current_job_id_ and current_job_ fields. The boolean return states whether or not a new job was obtained (if false, quit distributing!) More...

virtual void	current_job_finished ()
	Derived classes are allowed to clean up any temporary files or data relating to the current job after the current job has completed. Called inside go_main loop. Default implementation is a no-op. More...

virtual void	note_all_jobs_finished ()
	Derived classes are allowed to perform some kind of action when the job distributor runs out of jobs to execute. Called inside go_main. Default implementation is a no-op. More...

void	clear_current_job_output ()

void	set_batch_id (core::Size setting)
	set current_batch_id — eg for slave nodes in MPI framework More...

virtual void	batch_underflow ()
	if end of batches_ reached via next_batch or set_batch_id ... More...

virtual void	load_new_batch ()
	called by next_batch() or set_batch_id() to switch-over and restart JobDistributor on new batch More...

core::Size	nr_batches () const
	how many batches are in our list ... this can change dynamically More...

std::string const &	batch (core::Size batch_id)
	give name of batch with given id More...

Private Types
typedef MPIFileBufJobDistributor	Parent

Private Member Functions
void	setup_sub_communicators (core::Size sub_size)

Private Attributes
core::Size	n_comm_

int	sub_rank_

core::Size	communicator_handle_

Friends
class	JobDistributorFactory

Additional Inherited Members
Static Public Member Functions inherited from protocols::jd2::JobDistributor
static JobDistributor *	get_instance ()

Static Protected Member Functions inherited from protocols::jd2::JobDistributor
static void	setup_system_signal_handler (void(*prev_fn)(int)=jd2_signal_handler)
	Setting up callback function that will be call when our process is about to terminate. More...

static void	remove_system_signal_handler ()
	Set signal handler back to default state. More...

static void	jd2_signal_handler (int Signal)
	Default callback function for signal handling. More...

Detailed Description

This JobDistributor is intended for JD2 controlled runs of multiple parallel simulations that use multiple replicas: e.g., N trajectories of M replicas on N*M+2 processes. (2 processes for central JD2 and MPIFileBuf ) derived from MPIFileBufJobDistributor: two dedicated processes are used to handle JobDistribution and File-IO. all other processes (higher rank ) are used for computation.

Definition at line 49 of file MPIMultiCommJobDistributor.hh.

Member Typedef Documentation

typedef MPIFileBufJobDistributor protocols::jd2::MPIMultiCommJobDistributor::Parent

private

Definition at line 50 of file MPIMultiCommJobDistributor.hh.

Constructor & Destructor Documentation

protocols::jd2::MPIMultiCommJobDistributor::MPIMultiCommJobDistributor ( core::Size sub_size)

protected

ctor is protected; singleton pattern

constructor. Notice it calls the parent class! It also builds some internal variables for determining which processor it is in MPI land.

Definition at line 64 of file MPIMultiCommJobDistributor.cc.

Member Function Documentation

core::Size protocols::jd2::MPIMultiCommJobDistributor::get_new_job_id ( )

virtual

dummy for master/slave version

master-job distributes job-ids as usual. sub-masters obtain a new job from master all processes within a single communication context work on the same job-id. ( Bcast )

Reimplemented from protocols::jd2::MPIFileBufJobDistributor.

Definition at line 112 of file MPIMultiCommJobDistributor.cc.

virtual void protocols::jd2::MPIMultiCommJobDistributor::handle_interrupt ( )

inlineprotectedvirtual

This function got called when job is not yet finished and got termitated abnormaly (ctrl-c, kill etc). when implimenting it in subclasses make sure to delete all in-progress-data that your job spawn.

Reimplemented from protocols::jd2::MPIFileBufJobDistributor.

Definition at line 55 of file MPIMultiCommJobDistributor.hh.