| cached_score(FragmentCandidateOP, FragmentScoreMapOP) | protocols::frag_picker::scores::HydrophobicityProfileSimilarity | virtual |
| cached_scores_id_ | protocols::frag_picker::scores::HydrophobicityProfileSimilarity | private |
| CachingScoringMethod(Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name) | protocols::frag_picker::scores::CachingScoringMethod | inline |
| clean_up() | protocols::frag_picker::scores::HydrophobicityProfileSimilarity | inlinevirtual |
| do_caching(VallChunkOP) | protocols::frag_picker::scores::HydrophobicityProfileSimilarity | virtual |
| FragmentScoringMethod(Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name) | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_id() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_min_allowed_score() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_priority() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_score_name() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_use_lowest() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| HydrophobicityProfileSimilarity(Size priority, Real lowest_acceptable_value, bool use_lowest, std::string &fastaQuerySequence, sequence::SequenceProfileOP query_profile) | protocols::frag_picker::scores::HydrophobicityProfileSimilarity | inline |
| id_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| is_hydrophobic_ | protocols::frag_picker::scores::HydrophobicityProfileSimilarity | privatestatic |
| lowest_acceptable_value_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| name_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| priority_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| query_ | protocols::frag_picker::scores::HydrophobicityProfileSimilarity | private |
| query_profile_ | protocols::frag_picker::scores::HydrophobicityProfileSimilarity | private |
| score(FragmentCandidateOP, FragmentScoreMapOP) | protocols::frag_picker::scores::HydrophobicityProfileSimilarity | virtual |
| set_id(Size id) | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| set_min_allowed_score(Real lowest_acceptable_value) | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| use_lowest_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| ~HydrophobicityProfileSimilarity() | protocols::frag_picker::scores::HydrophobicityProfileSimilarity | inline |