#include <SidechainRmsdFilter.hh>

Inheritance diagram for protocols::simple_filters::SidechainRmsdFilter:

Collaboration diagram for protocols::simple_filters::SidechainRmsdFilter:

Public Member Functions
	SidechainRmsdFilter ()

	SidechainRmsdFilter (core::Size const res1, core::Size const res2, core::Real const rmsd_threshold)

bool	apply (core::pose::Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...

void	report (std::ostream &out, core::pose::Pose const &pose) const

core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...

core::Real	compute (core::pose::Pose const &pose) const

filters::FilterOP	clone () const

filters::FilterOP	fresh_instance () const

virtual	~SidechainRmsdFilter ()

void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

virtual	~Filter ()

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual void	apply (core::io::serialization::PipeMap &pmap)

virtual void	score (core::io::serialization::PipeMap &pmap)

virtual core::Real	score (core::pose::Pose &pose)

virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

virtual std::string	name () const

Private Attributes
core::Size	res1_

core::Size	res2_

core::Real	rmsd_threshold_

core::pose::PoseOP	reference_pose_

bool	include_backbone_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

Definition at line 29 of file SidechainRmsdFilter.hh.

Constructor & Destructor Documentation

protocols::simple_filters::SidechainRmsdFilter::SidechainRmsdFilter ( )

Definition at line 49 of file SidechainRmsdFilter.cc.

Referenced by clone(), and fresh_instance().

protocols::simple_filters::SidechainRmsdFilter::SidechainRmsdFilter	(	core::Size const	res1,
		core::Size const	res2,
		core::Real const	rmsd_threshold
	)

Definition at line 51 of file SidechainRmsdFilter.cc.

protocols::simple_filters::SidechainRmsdFilter::~SidechainRmsdFilter ( )

virtual

Definition at line 54 of file SidechainRmsdFilter.cc.

Member Function Documentation

bool protocols::simple_filters::SidechainRmsdFilter::apply ( core::pose::Pose const & pose) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

Definition at line 77 of file SidechainRmsdFilter.cc.

References compute(), res1_, rmsd_threshold_, and protocols::simple_filters::sidechain_rmsd_filter_tracer().

filters::FilterOP protocols::simple_filters::SidechainRmsdFilter::clone ( ) const

virtual

Implements protocols::filters::Filter.

Definition at line 131 of file SidechainRmsdFilter.cc.

References SidechainRmsdFilter().

core::Real protocols::simple_filters::SidechainRmsdFilter::compute ( core::pose::Pose const & pose) const

Definition at line 98 of file SidechainRmsdFilter.cc.

References core::scoring::automorphic_rmsd(), core::pose::Pose::conformation(), core::conformation::copy_residue_coordinates_and_rebuild_missing_atoms(), core::conformation::ResidueFactory::create_residue(), include_backbone_, reference_pose_, res1_, res2_, and core::conformation::Conformation::residue().

Referenced by apply(), report(), and report_sm().

filters::FilterOP protocols::simple_filters::SidechainRmsdFilter::fresh_instance ( ) const

virtual

Implements protocols::filters::Filter.

Definition at line 135 of file SidechainRmsdFilter.cc.

References SidechainRmsdFilter().

void protocols::simple_filters::SidechainRmsdFilter::parse_my_tag	(	utility::tag::TagPtr const	tag,
		protocols::moves::DataMap &	data_map,
		filters::Filters_map const &	,
		protocols::moves::Movers_map const &	,
		core::pose::Pose const &	pose
	)