protocols::hotspot_hashing::SearchPatternRotSetOp Class Reference

#include <SearchPatternRotSetOp.hh>

Inheritance diagram for protocols::hotspot_hashing::SearchPatternRotSetOp:

Collaboration diagram for protocols::hotspot_hashing::SearchPatternRotSetOp:

Public Types
typedef protocols::toolbox::rotamer_set_operations::RigidBodyMoveBaseRSO	parent

Public Member Functions
	SearchPatternRotSetOp (SearchPatternOP pattern)
	SearchPatternRotSetOp (SearchPatternRotSetOp const &other)
virtual core::pack::rotamer_set::RotamerSetOperationOP	clone () const
virtual utility::vector1 < core::conformation::ResidueCOP >	get_rigid_body_confs (core::pose::Pose const &pose, core::pack::task::PackerTask const &ptask, core::Size residue_index)
	returns candidate alternate RB conformations More...
virtual core::Real	increase_packer_residue_radius (core::pose::Pose const &pose, core::pack::task::PackerTaskCOP, core::Size residue_index)
Public Member Functions inherited from protocols::toolbox::rotamer_set_operations::RigidBodyMoveBaseRSO
virtual void	alter_rotamer_set (core::pose::Pose const &pose, core::scoring::ScoreFunction const &sfxn, core::pack::task::PackerTask const &ptask, core::graph::GraphCOP packer_neighbor_graph, core::pack::rotamer_set::RotamerSet &rotamer_set)
	Adds additional rotamers at each rb conf. More...
Public Member Functions inherited from core::pack::rotamer_set::RotamerSetOperation
	RotamerSetOperation ()
virtual	~RotamerSetOperation ()
virtual Real	increase_packer_residue_radius (pose::Pose const &pose, task::PackerTaskCOP the_task, core::Size residue_in) const

Private Attributes
utility::vector1 < core::kinematics::Stub >	search_stubs_

Additional Inherited Members
Static Public Member Functions inherited from protocols::toolbox::rotamer_set_operations::RigidBodyMoveBaseRSO
static core::Real	determine_largest_nbr_atom_distance (core::conformation::Residue const &target_res, utility::vector1< core::conformation::ResidueCOP > alternate_confs)
	returns the largest observed distance between the nbr atom in the target res and the nbr atom in any of the candidate rb confs More...
Protected Member Functions inherited from protocols::toolbox::rotamer_set_operations::RigidBodyMoveBaseRSO
	RigidBodyMoveBaseRSO ()
	RigidBodyMoveBaseRSO (const RigidBodyMoveBaseRSO &other)

Detailed Description

Definition at line 39 of file SearchPatternRotSetOp.hh.

Member Typedef Documentation

typedef protocols::toolbox::rotamer_set_operations::RigidBodyMoveBaseRSO protocols::hotspot_hashing::SearchPatternRotSetOp::parent

Definition at line 42 of file SearchPatternRotSetOp.hh.

Constructor & Destructor Documentation

protocols::hotspot_hashing::SearchPatternRotSetOp::SearchPatternRotSetOp

(

SearchPatternOP

pattern)

Definition at line 41 of file SearchPatternRotSetOp.cc.

Referenced by clone().

protocols::hotspot_hashing::SearchPatternRotSetOp::SearchPatternRotSetOp

(

SearchPatternRotSetOp const &

other)

Definition at line 46 of file SearchPatternRotSetOp.cc.

Member Function Documentation

core::pack::rotamer_set::RotamerSetOperationOP protocols::hotspot_hashing::SearchPatternRotSetOp::clone ( ) const

virtual

Implements core::pack::rotamer_set::RotamerSetOperation.

Definition at line 52 of file SearchPatternRotSetOp.cc.

References SearchPatternRotSetOp().

utility::vector1< core::conformation::ResidueCOP > protocols::hotspot_hashing::SearchPatternRotSetOp::get_rigid_body_confs ( core::pose::Pose const &  pose, core::pack::task::PackerTask const &  ptask, core::Size  residue_index  )

virtual

returns candidate alternate RB conformations

Implements protocols::toolbox::rotamer_set_operations::RigidBodyMoveBaseRSO.

Definition at line 59 of file SearchPatternRotSetOp.cc.

References protocols::hotspot_hashing::StubGenerator::moveFromStubFrame(), protocols::hotspot_hashing::StubGenerator::moveIntoStubFrame(), core::pose::Pose::residue(), protocols::hotspot_hashing::StubGenerator::residueStubCentroidFrame(), search_stubs_, protocols::hotspot_hashing::stub_to_points(), and protocols::hotspot_hashing::TR().

core::Real protocols::hotspot_hashing::SearchPatternRotSetOp::increase_packer_residue_radius ( core::pose::Pose const &  pose, core::pack::task::PackerTaskCOP  , core::Size  residue_index  )

virtual

Reimplemented from protocols::toolbox::rotamer_set_operations::RigidBodyMoveBaseRSO.

Definition at line 101 of file SearchPatternRotSetOp.cc.

References core::kinematics::Stub::global2local(), core::pose::Pose::residue(), protocols::hotspot_hashing::StubGenerator::residueStubCentroidFrame(), search_stubs_, and protocols::hotspot_hashing::TR().

Member Data Documentation

utility::vector1<core::kinematics::Stub> protocols::hotspot_hashing::SearchPatternRotSetOp::search_stubs_

private

Definition at line 65 of file SearchPatternRotSetOp.hh.

Referenced by get_rigid_body_confs(), and increase_packer_residue_radius().

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The documentation for this class was generated from the following files:

• src/protocols/hotspot_hashing/SearchPatternRotSetOp.hh
• src/protocols/hotspot_hashing/SearchPatternRotSetOp.cc