| AAname | core::scoring::constraints::NonResidueTypeConstraint | private |
| atom(Size const ) const | core::scoring::constraints::NonResidueTypeConstraint | inlinevirtual |
| AtomID typedef | core::scoring::constraints::Constraint | |
| choose_effective_sequence_separation(core::kinematics::ShortestPathInFoldTree const &sp, numeric::random::RandomGenerator &) | core::scoring::constraints::Constraint | inlinevirtual |
| clone() const | core::scoring::constraints::NonResidueTypeConstraint | virtual |
| core::scoring::constraints::Constraint::clone(FuncOP) const | core::scoring::constraints::Constraint | inlinevirtual |
| Constraint(ScoreType const &t) | core::scoring::constraints::Constraint | inline |
| dist(core::pose::Pose const &) const | core::scoring::constraints::Constraint | inlinevirtual |
| dist(XYZ_Func const &) const | core::scoring::constraints::Constraint | inlinevirtual |
| effective_sequence_separation(core::kinematics::ShortestPathInFoldTree const &) const | core::scoring::constraints::Constraint | inlinevirtual |
| favor_non_native_bonus_ | core::scoring::constraints::NonResidueTypeConstraint | private |
| fill_f1_f2(AtomID const &atom, XYZ_Func const &xyz, Vector &F1, Vector &F2, EnergyMap const &weights) const | core::scoring::constraints::NonResidueTypeConstraint | virtual |
| get_func() const | core::scoring::constraints::Constraint | inlinevirtual |
| natoms() const | core::scoring::constraints::NonResidueTypeConstraint | inlinevirtual |
| NonResidueTypeConstraint(pose::Pose const &pose, Size seqpos, Real non_native_residue_bonus) | core::scoring::constraints::NonResidueTypeConstraint | |
| NonResidueTypeConstraint(pose::Pose const &pose, Size seqpos, std::string AAname, Real favor_non_native_bonus) | core::scoring::constraints::NonResidueTypeConstraint | |
| NonResidueTypeConstraint(Size seqpos, std::string aa_in, std::string name3_in, core::Real bonus_in) | core::scoring::constraints::NonResidueTypeConstraint | |
| operator!=(Constraint const &other) const | core::scoring::constraints::Constraint | inline |
| operator==(Constraint const &) const | core::scoring::constraints::Constraint | inlinevirtual |
| read_constraint(std::istream &, core::pose::Pose const &) | core::scoring::constraints::Constraint | inlinevirtual |
| read_data(std::istream &) | core::scoring::constraints::Constraint | inlinevirtual |
| read_def(std::istream &, pose::Pose const &, FuncFactory const &) | core::scoring::constraints::Constraint | inlinevirtual |
| Real typedef | core::scoring::constraints::NonResidueTypeConstraint | |
| remap_resid(core::id::SequenceMapping const &seqmap) const | core::scoring::constraints::NonResidueTypeConstraint | virtual |
| remapped_clone(pose::Pose const &, pose::Pose const &, id::SequenceMappingCOP map=NULL) const | core::scoring::constraints::Constraint | inlinevirtual |
| residues() const | core::scoring::constraints::NonResidueTypeConstraint | virtual |
| rsd_type_name3_ | core::scoring::constraints::NonResidueTypeConstraint | private |
| score(XYZ_Func const &xyz_func, EnergyMap const &weights, EnergyMap &emap) const | core::scoring::constraints::NonResidueTypeConstraint | virtual |
| core::scoring::constraints::Constraint::score(conformation::Conformation const &) const | core::scoring::constraints::Constraint | inlinevirtual |
| score_type() const | core::scoring::constraints::Constraint | inline |
| seqpos_ | core::scoring::constraints::NonResidueTypeConstraint | private |
| setup_for_derivatives(XYZ_Func const &, ScoreFunction const &) const | core::scoring::constraints::Constraint | inlinevirtual |
| setup_for_scoring(XYZ_Func const &, ScoreFunction const &) const | core::scoring::constraints::Constraint | inlinevirtual |
| show(std::ostream &out) const | core::scoring::constraints::NonResidueTypeConstraint | virtual |
| show_def(std::ostream &, pose::Pose const &) const | core::scoring::constraints::Constraint | inlinevirtual |
| show_violations(std::ostream &out, pose::Pose const &, Size, Real threshold=1) const | core::scoring::constraints::Constraint | virtual |
| steal_def(pose::Pose const &) | core::scoring::constraints::Constraint | inlinevirtual |
| to_string() const | core::scoring::constraints::Constraint | inline |
| type() const | core::scoring::constraints::Constraint | inlinevirtual |
| ~Constraint() | core::scoring::constraints::Constraint | virtual |
| ~NonResidueTypeConstraint() | core::scoring::constraints::NonResidueTypeConstraint | virtual |
1.8.4