MultiStateEntity.cc

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// -*- mode:c++;tab-width:2;indent-tabs-mode:t;show-trailing-whitespace:t;rm-trailing-spaces:t -*-
// vi: set ts=2 noet:
//
// (c) Copyright Rosetta Commons Member Institutions.
// (c) This file is part of the Rosetta software suite and is made available under license.
// (c) The Rosetta software is developed by the contributing members of the Rosetta Commons.
// (c) For more information, see http://www.rosettacommons.org. Questions about this can be
// (c) addressed to University of Washington UW TechTransfer, email: license@u.washington.edu.

/// @file MultiStateEntity.hh
/// @brief
/// @author Colin A. Smith

// Unit headers
#include <protocols/multistate_design/MultiStateEntity.hh>

#include <protocols/genetic_algorithm/Entity.hh>
#include <protocols/multistate_design/SingleStateEntityData.hh>

#include <core/types.hh>
#include <basic/MetricValue.hh>

// Utility Headers
#include <utility/pointer/ReferenceCount.hh>

// ObjexxFCL Headers
#include <ObjexxFCL/format.hh>

// C++ Headers
#include <map>

#include <utility/vector1.hh>



namespace protocols {
namespace multistate_design {

MultiStateEntity::MultiStateEntity() : protocols::genetic_algorithm::Entity() {}

MultiStateEntity::MultiStateEntity( MultiStateEntity const & entity ) :
  protocols::genetic_algorithm::Entity(entity),
  single_state_entity_data_(entity.single_state_entity_data())
{}

MultiStateEntity::~MultiStateEntity() {}

MultiStateEntity::EntityOP
MultiStateEntity::clone() const { return new MultiStateEntity(*this); }

void MultiStateEntity::show( std::ostream & os ) const
{
  using namespace ObjexxFCL::fmt;

  os << "MultiStateEntity with traits:";
  genetic_algorithm::EntityElements const & seq( this->traits() );
  for ( genetic_algorithm::EntityElements::const_iterator
      it( seq.begin() ), end( seq.end() );
      it != end; ++it ) {
    os << " " << (*it)->to_string();
  }
  os << " and fitness " << F(6,3,this->fitness());
  for (core::Size i = 1; i <= single_state_entity_data_.size(); ++i) {
    os << '\n' << " SingleState " << i << " with fitness: " << single_state_entity_data_[i].fitness();
  }
}


void
MultiStateEntity::write_checkpoint(
  std::ostream & os
) const
{
  protocols::genetic_algorithm::Entity::write_checkpoint(os);

  os << " states " << single_state_entity_data_.size();
  for (core::Size i = 1; i <= single_state_entity_data_.size(); ++i) {
    os << "\n ";
    single_state_entity_data_[i].write_checkpoint(os);
  }
}

bool
MultiStateEntity::read_checkpoint(
  std::istream & is
)
{
  if (!protocols::genetic_algorithm::Entity::read_checkpoint(is)) return false;

  std::string word;
  if (!(is >> word)) return false;
  if (word != "states") return false;

  core::Size num_states;
  if (!(is >> num_states)) return false;
  single_state_entity_data_.resize(num_states);

  for (core::Size i = 1; i <= single_state_entity_data_.size(); ++i) {
    if (!single_state_entity_data_[i].read_checkpoint(is)) return false;
  }

  return true;
}

utility::vector1< SingleStateEntityData > const &
MultiStateEntity::single_state_entity_data() const { return single_state_entity_data_; }

utility::vector1< SingleStateEntityData > &
MultiStateEntity::single_state_entity_data() { return single_state_entity_data_; }


} // namespace multistate_design
} // namespace protocols