#include <TaskOperations.hh>

Inheritance diagram for core::pack::task::operation::RestrictAbsentCanonicalAAS:

Collaboration diagram for core::pack::task::operation::RestrictAbsentCanonicalAAS:

Public Types
typedef TaskOperation	parent

Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagPtr	TagPtr

typedef pose::Pose	Pose

Public Member Functions
	RestrictAbsentCanonicalAAS ()
	BEGIN RestrictAbsentCanonicalAAS. More...

	RestrictAbsentCanonicalAAS (core::Size resid, utility::vector1< bool > keep_aas)

virtual	~RestrictAbsentCanonicalAAS ()

virtual TaskOperationOP	clone () const
	Create another task operation of the type matching the most-derived version of the class. More...

virtual void	apply (pose::Pose const &, PackerTask &) const
	if resid_ is zero, will apply RestrictAbsentCanonicalAAs to all residues in the pose. O/w only to resid_ More...

void	keep_aas (std::string const keep_aas)
	a human-readible string-based mutator More...

void	keep_aas (utility::vector1< bool > keep_aas)
	direct vector1-basd mutator. If an amino acid is not present (false) in the boolean vector, then do not allow it at this position. The boolean vector is a 20-length vector in alphabetical order by one-letter code. More...

virtual void	parse_tag (TagPtr)
	Used to parse an xml-like tag to load parameters and properties. More...

void	include_residue (core::Size const resid)

Public Member Functions inherited from core::pack::task::operation::TaskOperation
virtual	~TaskOperation ()

virtual void	parse_def (utility::lua::LuaObject const &def)

Private Attributes
core::Size	resid_

utility::vector1< bool >	keep_aas_

Detailed Description

Definition at line 92 of file TaskOperations.hh.

Member Typedef Documentation

typedef TaskOperation core::pack::task::operation::RestrictAbsentCanonicalAAS::parent

Definition at line 95 of file TaskOperations.hh.

Constructor & Destructor Documentation

core::pack::task::operation::RestrictAbsentCanonicalAAS::RestrictAbsentCanonicalAAS ( )

BEGIN RestrictAbsentCanonicalAAS.

Definition at line 130 of file TaskOperations.cc.

References keep_aas_, and core::chemical::num_canonical_aas.

Referenced by clone().

core::pack::task::operation::RestrictAbsentCanonicalAAS::RestrictAbsentCanonicalAAS	(	core::Size	resid,
		utility::vector1< bool >	keep_aas
	)

Definition at line 137 of file TaskOperations.cc.

References include_residue(), and keep_aas().

core::pack::task::operation::RestrictAbsentCanonicalAAS::~RestrictAbsentCanonicalAAS ( )

virtual

Definition at line 145 of file TaskOperations.cc.

Member Function Documentation

void core::pack::task::operation::RestrictAbsentCanonicalAAS::apply	(	pose::Pose const &	,
		PackerTask &	task
	)		const

virtual

if resid_ is zero, will apply RestrictAbsentCanonicalAAs to all residues in the pose. O/w only to resid_

Implements core::pack::task::operation::TaskOperation.

Definition at line 158 of file TaskOperations.cc.

References keep_aas_, core::pack::task::PackerTask::nonconst_residue_task(), resid_, core::pack::task::ResidueLevelTask::restrict_absent_canonical_aas(), and core::pack::task::PackerTask::total_residue().

Referenced by protocols::toolbox::task_operations::ThreadSequenceOperation::apply(), protocols::toolbox::task_operations::ProteinInterfaceDesignOperation::apply(), and protocols::simple_moves::DesignRepackMover::setup_packer_and_movemap().

TaskOperationOP core::pack::task::operation::RestrictAbsentCanonicalAAS::clone ( ) const

virtual

Create another task operation of the type matching the most-derived version of the class.

Implements core::pack::task::operation::TaskOperation.

Definition at line 152 of file TaskOperations.cc.

References RestrictAbsentCanonicalAAS().

void core::pack::task::operation::RestrictAbsentCanonicalAAS::include_residue ( core::Size const resid)

Definition at line 199 of file TaskOperations.cc.

References resid_.

Referenced by protocols::toolbox::task_operations::ThreadSequenceOperation::apply(), parse_tag(), and RestrictAbsentCanonicalAAS().

void core::pack::task::operation::RestrictAbsentCanonicalAAS::keep_aas ( std::string const keep_aas)

a human-readible string-based mutator

Definition at line 170 of file TaskOperations.cc.

References core::chemical::aa_from_oneletter_code(), core::pack::dunbrack::c, keep_aas_, core::chemical::num_canonical_aas, and core::chemical::oneletter_code_specifies_aa().

Referenced by protocols::toolbox::task_operations::ThreadSequenceOperation::apply(), parse_tag(), and RestrictAbsentCanonicalAAS().

void core::pack::task::operation::RestrictAbsentCanonicalAAS::keep_aas ( utility::vector1< bool > keep_aas)

direct vector1-basd mutator. If an amino acid is not present (false) in the boolean vector, then do not allow it at this position. The boolean vector is a 20-length vector in alphabetical order by one-letter code.

Definition at line 189 of file TaskOperations.cc.

References keep_aas_, and core::chemical::num_canonical_aas.

void core::pack::task::operation::RestrictAbsentCanonicalAAS::parse_tag ( TagPtr tag)

virtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

Definition at line 205 of file TaskOperations.cc.

References include_residue(), and keep_aas().