#include <JD2ResourceManager.hh>

Inheritance diagram for protocols::jd2::JD2ResourceManager:

Collaboration diagram for protocols::jd2::JD2ResourceManager:

Public Member Functions
virtual void	clear ()

virtual	~JD2ResourceManager ()

basic::resource_manager::ResourceOP	get_resource (basic::resource_manager::ResourceDescription const &resource_description)

bool	has_resource_with_description (basic::resource_manager::ResourceDescription const &resource_description)

void	read_resource_locators_tags (utility::tag::TagPtr tags)

void	read_resource_options_tags (utility::tag::TagPtr tags)

void	read_resources_tags (utility::tag::TagPtr tags)

virtual bool	get_option (utility::options::BooleanOptionKey key) const

virtual utility::vector1< bool > const &	get_option (utility::options::BooleanVectorOptionKey key) const

virtual utility::file::FileName const &	get_option (utility::options::FileOptionKey key) const

virtual utility::vector1 < utility::file::FileName > const &	get_option (utility::options::FileVectorOptionKey key) const

virtual int	get_option (utility::options::IntegerOptionKey key) const

virtual utility::vector1< int > const &	get_option (utility::options::IntegerVectorOptionKey key) const

virtual utility::file::PathName const &	get_option (utility::options::PathOptionKey key) const

virtual utility::vector1 < utility::file::PathName > const &	get_option (utility::options::PathVectorOptionKey key) const

virtual platform::Real	get_option (utility::options::RealOptionKey key) const

virtual utility::vector1 < platform::Real > const &	get_option (utility::options::RealVectorOptionKey key) const

virtual std::string const &	get_option (utility::options::StringOptionKey key) const

virtual utility::vector1 < std::string > const &	get_option (utility::options::StringVectorOptionKey key) const

virtual bool	has_option (utility::options::BooleanOptionKey key) const

virtual bool	has_option (utility::options::BooleanVectorOptionKey key) const

virtual bool	has_option (utility::options::FileOptionKey key) const

virtual bool	has_option (utility::options::FileVectorOptionKey key) const

virtual bool	has_option (utility::options::IntegerOptionKey key) const

virtual bool	has_option (utility::options::IntegerVectorOptionKey key) const

virtual bool	has_option (utility::options::PathOptionKey key) const

virtual bool	has_option (utility::options::PathVectorOptionKey key) const

virtual bool	has_option (utility::options::RealOptionKey key) const

virtual bool	has_option (utility::options::RealVectorOptionKey key) const

virtual bool	has_option (utility::options::StringOptionKey key) const

virtual bool	has_option (utility::options::StringVectorOptionKey key) const

Static Public Member Functions
static JD2ResourceManager *	get_jd2_resource_manager_instance ()

Protected Member Functions
	JD2ResourceManager ()

Private Member Functions
void	read_resource_options_table_tag (utility::tag::TagPtr tag)

void	read_resource_option_item (utility::tag::TagPtr tag)

void	check_resource_loader_type (basic::resource_manager::LoaderType const &loader_type)
	Check if the loader type is defined with the ResourceLoaderFactory More...

basic::resource_manager::ResourceTag	read_resource_tag_item (utility::tag::TagPtr tags, basic::resource_manager::LoaderType const &loader_type, basic::resource_manager::LocatorID const &locator_id)

void	read_resource_table_tag (utility::tag::TagPtr tags)

basic::resource_manager::LocatorTag	read_resource_locator_items (utility::tag::TagPtr tags, basic::resource_manager::LoaderType const &loader_type, basic::resource_manager::LocatorID &locator_id)
	find the LocatorTag item from the resource tag. Based on the LocatorTag fill the LocatorID. locator item (&string): FileSystemResourceLocator (default) More...

basic::resource_manager::ResourceOptionsTag	read_resource_options_tag_item (utility::tag::TagPtr tags, basic::resource_manager::LoaderType const &loader_type, basic::resource_manager::ResourceTag const &resource_tag)

basic::resource_manager::ResourceOP	create_resource_from_fallback (basic::resource_manager::FallbackConfigurationCOP fallback, basic::resource_manager::ResourceDescription const &resource_description)

Private Attributes
std::map< std::string, std::string >	fallback_resource_descriptions_created_

Friends
class	JD2ResourceManagerCreator

Detailed Description

Definition at line 34 of file JD2ResourceManager.hh.

Constructor & Destructor Documentation

protocols::jd2::JD2ResourceManager::JD2ResourceManager ( )

protected

Definition at line 109 of file JD2ResourceManager.cc.

protocols::jd2::JD2ResourceManager::~JD2ResourceManager ( )

virtual

Definition at line 112 of file JD2ResourceManager.cc.

Member Function Documentation

void protocols::jd2::JD2ResourceManager::check_resource_loader_type ( basic::resource_manager::LoaderType const & loader_type)

private

Check if the loader type is defined with the ResourceLoaderFactory

Definition at line 319 of file JD2ResourceManager.cc.

Referenced by read_resource_table_tag(), and read_resources_tags().

void protocols::jd2::JD2ResourceManager::clear ( )

virtual

Definition at line 103 of file JD2ResourceManager.cc.

basic::resource_manager::ResourceOP protocols::jd2::JD2ResourceManager::create_resource_from_fallback	(	basic::resource_manager::FallbackConfigurationCOP	fallback,
		basic::resource_manager::ResourceDescription const &	resource_description
	)

private

Definition at line 1005 of file JD2ResourceManager.cc.

Referenced by get_resource().

JD2ResourceManager * protocols::jd2::JD2ResourceManager::get_jd2_resource_manager_instance ( )

static

Definition at line 609 of file JD2ResourceManager.cc.

Referenced by protocols::jd2::JD2ResourceManagerJobInputter::check_each_job_has_startstruct(), protocols::jd2::JD2ResourceManagerJobInputter::cleanup_after_job_completion(), protocols::jd2::JD2ResourceManagerJobInputter::fill_jobs_from_stream(), protocols::jd2::JD2ResourceManagerJobInputter::parse_job_tag(), protocols::jd2::JD2ResourceManagerJobInputter::pose_from_job(), protocols::jd2::JD2ResourceManagerJobInputter::read_Data_for_subtag(), and protocols::jd2::JD2ResourceManagerJobInputter::record_job().

bool protocols::jd2::JD2ResourceManager::get_option ( utility::options::BooleanOptionKey key) const

virtual

Definition at line 715 of file JD2ResourceManager.cc.

References protocols::nonlocal::current_job(), protocols::jd2::JobDistributor::get_instance(), and protocols::jd2::Job::input_tag().

utility::vector1< bool > const & protocols::jd2::JD2ResourceManager::get_option ( utility::options::BooleanVectorOptionKey key) const

virtual

Definition at line 729 of file JD2ResourceManager.cc.

References protocols::nonlocal::current_job(), protocols::jd2::JobDistributor::get_instance(), and protocols::jd2::Job::input_tag().

utility::file::FileName const & protocols::jd2::JD2ResourceManager::get_option ( utility::options::FileOptionKey key) const

virtual

Definition at line 743 of file JD2ResourceManager.cc.

References protocols::nonlocal::current_job(), protocols::jd2::JobDistributor::get_instance(), and protocols::jd2::Job::input_tag().

utility::vector1< utility::file::FileName > const & protocols::jd2::JD2ResourceManager::get_option ( utility::options::FileVectorOptionKey key) const

virtual

Definition at line 757 of file JD2ResourceManager.cc.

References protocols::nonlocal::current_job(), protocols::jd2::JobDistributor::get_instance(), and protocols::jd2::Job::input_tag().

int protocols::jd2::JD2ResourceManager::get_option ( utility::options::IntegerOptionKey key) const

virtual

Definition at line 771 of file JD2ResourceManager.cc.

References protocols::nonlocal::current_job(), protocols::jd2::JobDistributor::get_instance(), and protocols::jd2::Job::input_tag().

utility::vector1< int > const & protocols::jd2::JD2ResourceManager::get_option ( utility::options::IntegerVectorOptionKey key) const

virtual

Definition at line 785 of file JD2ResourceManager.cc.

References protocols::nonlocal::current_job(), protocols::jd2::JobDistributor::get_instance(), and protocols::jd2::Job::input_tag().

utility::file::PathName const & protocols::jd2::JD2ResourceManager::get_option ( utility::options::PathOptionKey key) const

virtual

Definition at line 799 of file JD2ResourceManager.cc.

References protocols::nonlocal::current_job(), protocols::jd2::JobDistributor::get_instance(), and protocols::jd2::Job::input_tag().

utility::vector1< utility::file::PathName > const & protocols::jd2::JD2ResourceManager::get_option ( utility::options::PathVectorOptionKey key) const

virtual

Definition at line 813 of file JD2ResourceManager.cc.

References protocols::nonlocal::current_job(), protocols::jd2::JobDistributor::get_instance(), and protocols::jd2::Job::input_tag().

platform::Real protocols::jd2::JD2ResourceManager::get_option ( utility::options::RealOptionKey key) const

virtual

Definition at line 827 of file JD2ResourceManager.cc.

References protocols::nonlocal::current_job(), protocols::jd2::JobDistributor::get_instance(), and protocols::jd2::Job::input_tag().

utility::vector1< platform::Real > const & protocols::jd2::JD2ResourceManager::get_option ( utility::options::RealVectorOptionKey key) const

virtual

Definition at line 841 of file JD2ResourceManager.cc.

References protocols::nonlocal::current_job(), protocols::jd2::JobDistributor::get_instance(), and protocols::jd2::Job::input_tag().

std::string const & protocols::jd2::JD2ResourceManager::get_option ( utility::options::StringOptionKey key) const

virtual

Definition at line 855 of file JD2ResourceManager.cc.

References protocols::nonlocal::current_job(), protocols::jd2::JobDistributor::get_instance(), and protocols::jd2::Job::input_tag().

utility::vector1< std::string > const & protocols::jd2::JD2ResourceManager::get_option ( utility::options::StringVectorOptionKey key) const

virtual

Definition at line 869 of file JD2ResourceManager.cc.

References protocols::nonlocal::current_job(), protocols::jd2::JobDistributor::get_instance(), and protocols::jd2::Job::input_tag().

ResourceOP protocols::jd2::JD2ResourceManager::get_resource ( basic::resource_manager::ResourceDescription const & resource_description)

Definition at line 651 of file JD2ResourceManager.cc.

References create_resource_from_fallback(), protocols::jd2::JobDistributor::current_job(), fallback_resource_descriptions_created_, and protocols::jd2::JobDistributor::get_instance().

bool protocols::jd2::JD2ResourceManager::has_option ( utility::options::BooleanOptionKey key) const

virtual

Definition at line 883 of file JD2ResourceManager.cc.

References protocols::nonlocal::current_job(), and protocols::jd2::JobDistributor::get_instance().

bool protocols::jd2::JD2ResourceManager::has_option ( utility::options::BooleanVectorOptionKey key) const

virtual

Definition at line 895 of file JD2ResourceManager.cc.

References protocols::nonlocal::current_job(), protocols::jd2::JobDistributor::get_instance(), and protocols::jd2::Job::input_tag().

bool protocols::jd2::JD2ResourceManager::has_option ( utility::options::FileOptionKey key) const

virtual

Definition at line 905 of file JD2ResourceManager.cc.

References protocols::nonlocal::current_job(), protocols::jd2::JobDistributor::get_instance(), and protocols::jd2::Job::input_tag().

bool protocols::jd2::JD2ResourceManager::has_option ( utility::options::FileVectorOptionKey key) const

virtual

Definition at line 915 of file JD2ResourceManager.cc.

References protocols::nonlocal::current_job(), protocols::jd2::JobDistributor::get_instance(), and protocols::jd2::Job::input_tag().

bool protocols::jd2::JD2ResourceManager::has_option ( utility::options::IntegerOptionKey key) const

virtual

Definition at line 925 of file JD2ResourceManager.cc.

References protocols::nonlocal::current_job(), protocols::jd2::JobDistributor::get_instance(), and protocols::jd2::Job::input_tag().

bool protocols::jd2::JD2ResourceManager::has_option ( utility::options::IntegerVectorOptionKey key) const

virtual

Definition at line 935 of file JD2ResourceManager.cc.

References protocols::nonlocal::current_job(), protocols::jd2::JobDistributor::get_instance(), and protocols::jd2::Job::input_tag().

bool protocols::jd2::JD2ResourceManager::has_option ( utility::options::PathOptionKey key) const

virtual

Definition at line 945 of file JD2ResourceManager.cc.

References protocols::nonlocal::current_job(), protocols::jd2::JobDistributor::get_instance(), and protocols::jd2::Job::input_tag().

bool protocols::jd2::JD2ResourceManager::has_option ( utility::options::PathVectorOptionKey key) const

virtual

Definition at line 955 of file JD2ResourceManager.cc.

References protocols::nonlocal::current_job(), protocols::jd2::JobDistributor::get_instance(), and protocols::jd2::Job::input_tag().

bool protocols::jd2::JD2ResourceManager::has_option ( utility::options::RealOptionKey key) const

virtual

Definition at line 965 of file JD2ResourceManager.cc.

References protocols::nonlocal::current_job(), protocols::jd2::JobDistributor::get_instance(), and protocols::jd2::Job::input_tag().

bool protocols::jd2::JD2ResourceManager::has_option ( utility::options::RealVectorOptionKey key) const

virtual

Definition at line 975 of file JD2ResourceManager.cc.

References protocols::nonlocal::current_job(), protocols::jd2::JobDistributor::get_instance(), and protocols::jd2::Job::input_tag().

bool protocols::jd2::JD2ResourceManager::has_option ( utility::options::StringOptionKey key) const

virtual

Definition at line 985 of file JD2ResourceManager.cc.

References protocols::nonlocal::current_job(), protocols::jd2::JobDistributor::get_instance(), and protocols::jd2::Job::input_tag().

bool protocols::jd2::JD2ResourceManager::has_option ( utility::options::StringVectorOptionKey key) const

virtual

Definition at line 995 of file JD2ResourceManager.cc.

References protocols::nonlocal::current_job(), protocols::jd2::JobDistributor::get_instance(), and protocols::jd2::Job::input_tag().

bool protocols::jd2::JD2ResourceManager::has_resource_with_description ( basic::resource_manager::ResourceDescription const & resource_description)

Definition at line 624 of file JD2ResourceManager.cc.

References protocols::nonlocal::current_job(), fallback_resource_descriptions_created_, and protocols::jd2::JobDistributor::get_instance().

LocatorTag protocols::jd2::JD2ResourceManager::read_resource_locator_items	(	utility::tag::TagPtr	tags,
		basic::resource_manager::LoaderType const &	loader_type,
		basic::resource_manager::LocatorID &	locator_id
	)

private

find the LocatorTag item from the resource tag. Based on the LocatorTag fill the LocatorID. locator item (&string): FileSystemResourceLocator (default)

- file item is interchangable with the locatorID item

locatorID item (&string):

Definition at line 373 of file JD2ResourceManager.cc.

Referenced by read_resources_tags().

void protocols::jd2::JD2ResourceManager::read_resource_locators_tags ( utility::tag::TagPtr tags)

instantiate all the resource locators given in the input tags, and put them into the base class. Make sure no two resource locators share a common name.

Definition at line 117 of file JD2ResourceManager.cc.

Referenced by protocols::jd2::JD2ResourceManagerJobInputter::fill_jobs_from_stream().

void protocols::jd2::JD2ResourceManager::read_resource_option_item ( utility::tag::TagPtr tag)

private

Definition at line 271 of file JD2ResourceManager.cc.

Referenced by read_resource_options_table_tag(), and read_resource_options_tags().

void protocols::jd2::JD2ResourceManager::read_resource_options_table_tag ( utility::tag::TagPtr tag)

private

Definition at line 190 of file JD2ResourceManager.cc.

References read_resource_option_item(), and core::scoring::hbonds::t().

Referenced by read_resource_options_tags().

ResourceOptionsTag protocols::jd2::JD2ResourceManager::read_resource_options_tag_item	(	utility::tag::TagPtr	tags,
		basic::resource_manager::LoaderType const &	loader_type,
		basic::resource_manager::ResourceTag const &	resource_tag
	)

private

Definition at line 441 of file JD2ResourceManager.cc.

Referenced by read_resources_tags().

void protocols::jd2::JD2ResourceManager::read_resource_options_tags ( utility::tag::TagPtr tags)

instantiate all the resource options and put them in the base class. Make sure no two resource options are given the same name.

Definition at line 169 of file JD2ResourceManager.cc.

References read_resource_option_item(), and read_resource_options_table_tag().

Referenced by protocols::jd2::JD2ResourceManagerJobInputter::fill_jobs_from_stream().

void protocols::jd2::JD2ResourceManager::read_resource_table_tag ( utility::tag::TagPtr tags)

private

Definition at line 508 of file JD2ResourceManager.cc.

References check_resource_loader_type().

Referenced by read_resources_tags().

ResourceTag protocols::jd2::JD2ResourceManager::read_resource_tag_item	(	utility::tag::TagPtr	tags,
		basic::resource_manager::LoaderType const &	loader_type,
		basic::resource_manager::LocatorID const &	locator_id
	)

private

make sure the resource object has been given a tag and that no other resource object has been delecared with the same name.

Definition at line 340 of file JD2ResourceManager.cc.

Referenced by read_resources_tags().

void protocols::jd2::JD2ResourceManager::read_resources_tags ( utility::tag::TagPtr tags)

read through all the resources, and put them into the base class for later instantiation. Make sure each resource is named, that it is the only resource that has been declared with this name, and that

Definition at line 466 of file JD2ResourceManager.cc.

References check_resource_loader_type(), read_resource_locator_items(), read_resource_options_tag_item(), read_resource_table_tag(), and read_resource_tag_item().

Referenced by protocols::jd2::JD2ResourceManagerJobInputter::fill_jobs_from_stream().