protocols::loops::LoopsFileIO Class Reference

#include <LoopsFileIO.hh>

Inheritance diagram for protocols::loops::LoopsFileIO:

Collaboration diagram for protocols::loops::LoopsFileIO:

Public Member Functions
	LoopsFileIO ()
	LoopsFileIO (const LoopsFileIO &src)
virtual	~LoopsFileIO ()
LoopsFileDataOP	read_loop_file (std::string const &filename, bool prohibit_single_residue_loops=true)
	Return an "unresolved" list of loops specified in a file which can be turned into a "resolved" list of residue indices in a particular Pose by giving each LoopFromFileData object access to that Pose. Note: prohibit_single_residue_loops used to be called "strict_looprelax_checks_" which was decidedly opaque. More...
LoopsFileDataOP	read_loop_file_stream (std::istream &loopfstream, std::string const &filename, bool prohibit_single_residue_loops=true)

Friends
std::ostream &	operator<< (std::ostream &os, const LoopsFileIO &loops_file_io)

Detailed Description

Definition at line 262 of file LoopsFileIO.hh.

Constructor & Destructor Documentation

protocols::loops::LoopsFileIO::LoopsFileIO

(

)

Definition at line 444 of file LoopsFileIO.cc.

protocols::loops::LoopsFileIO::LoopsFileIO

(

const LoopsFileIO &

src)

Definition at line 449 of file LoopsFileIO.cc.

protocols::loops::LoopsFileIO::~LoopsFileIO ( )

virtual

Definition at line 454 of file LoopsFileIO.cc.

Member Function Documentation

LoopsFileDataOP protocols::loops::LoopsFileIO::read_loop_file	(	std::string const &	filename,
		bool	prohibit_single_residue_loops = true
	)

Return an "unresolved" list of loops specified in a file which can be turned into a "resolved" list of residue indices in a particular Pose by giving each LoopFromFileData object access to that Pose. Note: prohibit_single_residue_loops used to be called "strict_looprelax_checks_" which was decidedly opaque.

Definition at line 470 of file LoopsFileIO.cc.

References read_loop_file_stream().

Referenced by protocols::loops::loops_definers::LoopsFileDefiner::parse_my_tag().

LoopsFileDataOP protocols::loops::LoopsFileIO::read_loop_file_stream	(	std::istream &	loopfstream,
		std::string const &	filename,
		bool	prohibit_single_residue_loops = true
	)

Definition at line 484 of file LoopsFileIO.cc.

References protocols::loops::JSONFormattedLoopsFileReader::read_loop_file(), protocols::loops::PoseNumberedLoopFileReader::read_pose_numbered_loops_file(), protocols::loops::PoseNumberedLoopFileReader::set_linecount_offset(), protocols::loops::JSONFormattedLoopsFileReader::set_linecount_offset(), and core::io::pdb::split().

Referenced by protocols::loops::LoopsFileLoader::create_resource(), and read_loop_file().

Friends And Related Function Documentation

std::ostream& operator<< ( std::ostream &  os, const LoopsFileIO &  loops_file_io  )

friend

Definition at line 457 of file LoopsFileIO.cc.

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The documentation for this class was generated from the following files:

• src/protocols/loops/LoopsFileIO.hh
• src/protocols/loops/LoopsFileIO.cc