#include <WriteUpstreamCoordinateKineamge.hh>

Collaboration diagram for protocols::match::output::ResidueKinemageWriter:

Public Types
typedef core::Size	Size

Public Member Functions
	ResidueKinemageWriter ()

void	write_rsd_coords (std::ostream &ostr, Size const scaffold_build_point_id, Size const upstream_conf_id, core::conformation::Residue const &rsd, bool is_instance=false) const
	Write out the coordinates for a particular residue; the kinemage tag is assumed to have been writen already. More...

void	dominant (bool setting)

void	animate (bool setting)

void	group (bool setting)

void	write_virtual_atoms (bool setting)

void	master (std::string const &setting)

Private Attributes
std::string	master_

bool	dominant_

bool	animate_

bool	group_

bool	write_virtual_atoms_

Detailed Description

Definition at line 48 of file WriteUpstreamCoordinateKineamge.hh.

Member Typedef Documentation

typedef core::Size protocols::match::output::ResidueKinemageWriter::Size

Definition at line 51 of file WriteUpstreamCoordinateKineamge.hh.

Constructor & Destructor Documentation

protocols::match::output::ResidueKinemageWriter::ResidueKinemageWriter ( )

Definition at line 101 of file WriteUpstreamCoordinateKineamge.cc.

Member Function Documentation

void protocols::match::output::ResidueKinemageWriter::animate ( bool setting)

Definition at line 172 of file WriteUpstreamCoordinateKineamge.cc.

References animate_.

Referenced by protocols::match::output::WriteUpstreamHitKinemage::output_upstream_coordinates().

void protocols::match::output::ResidueKinemageWriter::dominant ( bool setting)

Definition at line 171 of file WriteUpstreamCoordinateKineamge.cc.

References dominant_.

Referenced by protocols::match::output::WriteUpstreamHitKinemage::output_upstream_coordinates().

void protocols::match::output::ResidueKinemageWriter::group ( bool setting)

Definition at line 173 of file WriteUpstreamCoordinateKineamge.cc.

References group_.

Referenced by protocols::match::output::WriteUpstreamHitKinemage::output_upstream_coordinates().

void protocols::match::output::ResidueKinemageWriter::master ( std::string const & setting)

Definition at line 174 of file WriteUpstreamCoordinateKineamge.cc.

References master_.

Referenced by protocols::match::output::WriteUpstreamCoordinateKinemage::build(), and protocols::match::output::WriteUpstreamHitKinemage::output_upstream_coordinates().

void protocols::match::output::ResidueKinemageWriter::write_rsd_coords	(	std::ostream &	ostr,
		Size const	scaffold_build_point_id,
		Size const	upstream_conf_id,
		core::conformation::Residue const &	rsd,
		bool	is_instance = `false`
	)		const

Write out the coordinates for a particular residue; the kinemage tag is assumed to have been writen already.

Don't write out multiple copies of the upstream coordinates if you're drawing multiple instances of the downstream partner from a single rotamer. Instead, use the kinemage "instance" flag to point to the coordinates already written out in this file. This creates a smaller output file.

Definition at line 114 of file WriteUpstreamCoordinateKineamge.cc.

References animate_, core::conformation::Residue::atom_is_backbone(), core::conformation::Residue::atom_is_hydrogen(), core::conformation::Residue::atom_type(), dominant_, core::chemical::AtomType::element(), group_, master_, core::conformation::Residue::name(), core::conformation::Residue::natoms(), core::conformation::Residue::nbrs(), protocols::match::output::print_node(), core::conformation::Residue::seqpos(), and write_virtual_atoms_.