#include <RestrictToAlignedSegments.hh>

Inheritance diagram for protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation:

Collaboration diagram for protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation:

Public Types
typedef RestrictOperationsBase	parent

Public Types inherited from protocols::toolbox::task_operations::RestrictOperationsBase
typedef core::pack::task::operation::TaskOperation	TaskOperation

typedef core::pack::task::operation::TaskOperationOP	TaskOperationOP

typedef TaskOperation	parent

Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagPtr	TagPtr

typedef pose::Pose	Pose

Public Member Functions
	RestrictToAlignedSegmentsOperation ()

virtual	~RestrictToAlignedSegmentsOperation ()

virtual TaskOperationOP	clone () const
	Create another task operation of the type matching the most-derived version of the class. More...

virtual void	apply (core::pose::Pose const &, core::pack::task::PackerTask &) const
	Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...

virtual void	parse_tag (TagPtr)
	Used to parse an xml-like tag to load parameters and properties. More...

utility::vector1< core::Size >	start_res () const

void	start_res (utility::vector1< core::Size > const s)

utility::vector1< core::Size >	stop_res () const

void	stop_res (utility::vector1< core::Size > const s)

core::Size	chain () const

void	chain (core::Size const c)

core::Real	repack_shell () const

void	repack_shell (core::Real const r)

Public Member Functions inherited from protocols::toolbox::task_operations::RestrictOperationsBase
	RestrictOperationsBase ()

virtual	~RestrictOperationsBase ()

Public Member Functions inherited from core::pack::task::operation::TaskOperation
virtual	~TaskOperation ()

virtual void	parse_def (utility::lua::LuaObject const &def)

Private Attributes
utility::vector1 < core::pose::PoseOP >	source_pose_

utility::vector1< core::Size >	start_res_

utility::vector1< core::Size >	stop_res_

core::Size	chain_

core::Real	repack_shell_

Additional Inherited Members
Protected Member Functions inherited from protocols::toolbox::task_operations::RestrictOperationsBase
void	run_calculator (core::pose::Pose const &pose, std::string const &calculator, std::string const &calculation, utility::vector1_bool &residues) const
	this is the only real function - it takes a calculator name and calculation, and a PackerTask-compatible vector, and flips booleans in the vector according to the calculator More...

Detailed Description

this class is a TaskOperation to prevent repacking of residues not near an interface.

Definition at line 42 of file RestrictToAlignedSegments.hh.

Member Typedef Documentation

typedef RestrictOperationsBase protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::parent

Definition at line 45 of file RestrictToAlignedSegments.hh.

Constructor & Destructor Documentation

protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::RestrictToAlignedSegmentsOperation ( )

Definition at line 59 of file RestrictToAlignedSegments.cc.

protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::~RestrictToAlignedSegmentsOperation ( )

virtual

Definition at line 68 of file RestrictToAlignedSegments.cc.

Member Function Documentation

void protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::apply	(	core::pose::Pose const &	,
		core::pack::task::PackerTask &
	)		const

virtual

Change a packer task in some way. The input pose is the one to which the input task will be later applied.

Implements protocols::toolbox::task_operations::RestrictOperationsBase.

Definition at line 82 of file RestrictToAlignedSegments.cc.

References core::conformation::Conformation::chain_begin(), core::conformation::Conformation::chain_end(), core::pose::Pose::conformation(), protocols::toolbox::task_operations::DesignAroundOperation::design_shell(), protocols::rosetta_scripts::find_nearest_res(), core::pack::task::operation::OperateOnCertainResidues::op(), core::pack::task::TaskFactory::push_back(), protocols::rosetta_scripts::residue_packer_states(), and protocols::TR().

core::Size protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::chain ( ) const

inline

Definition at line 63 of file RestrictToAlignedSegments.hh.

References chain_.

void protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::chain ( core::Size const c)

inline

Definition at line 64 of file RestrictToAlignedSegments.hh.

References core::pack::dunbrack::c, and chain_.

core::pack::task::operation::TaskOperationOP protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::clone ( ) const

virtual

Create another task operation of the type matching the most-derived version of the class.

Implements protocols::toolbox::task_operations::RestrictOperationsBase.

Definition at line 76 of file RestrictToAlignedSegments.cc.

void protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::parse_tag ( TagPtr tag)

virtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

Definition at line 146 of file RestrictToAlignedSegments.cc.

References core::pose::parse_resnum(), and core::import_pose::pose_from_pdb().

core::Real protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::repack_shell ( ) const

inline

Definition at line 66 of file RestrictToAlignedSegments.hh.

References repack_shell_.

void protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::repack_shell ( core::Real const r)

inline

Definition at line 67 of file RestrictToAlignedSegments.hh.

References repack_shell_.

utility::vector1< core::Size > protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::start_res ( ) const

inline

Definition at line 59 of file RestrictToAlignedSegments.hh.

References start_res_.

void protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::start_res ( utility::vector1< core::Size > const s)

inline

Definition at line 60 of file RestrictToAlignedSegments.hh.

References start_res_.

utility::vector1< core::Size > protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::stop_res ( ) const

inline

Definition at line 61 of file RestrictToAlignedSegments.hh.

References stop_res_.

void protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::stop_res ( utility::vector1< core::Size > const s)

inline

Definition at line 62 of file RestrictToAlignedSegments.hh.

References stop_res_.

Member Data Documentation

core::Size protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::chain_

private

Definition at line 72 of file RestrictToAlignedSegments.hh.

Referenced by chain().

core::Real protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::repack_shell_

private

Definition at line 73 of file RestrictToAlignedSegments.hh.

Referenced by repack_shell().

utility::vector1< core::pose::PoseOP > protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::source_pose_

private

Definition at line 69 of file RestrictToAlignedSegments.hh.

utility::vector1< core::Size > protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::start_res_

private

Definition at line 70 of file RestrictToAlignedSegments.hh.

Referenced by start_res().

utility::vector1< core::Size > protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::stop_res_

private

Definition at line 71 of file RestrictToAlignedSegments.hh.

Referenced by stop_res().

The documentation for this class was generated from the following files:

src/protocols/toolbox/task_operations/RestrictToAlignedSegments.hh
src/protocols/toolbox/task_operations/RestrictToAlignedSegments.cc

Public Types

Public Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation