| add_chainbreakweights(bool acbw) | protocols::seeded_abinitio::CloseFold | private |
| apply(core::pose::Pose &pose) | protocols::seeded_abinitio::CloseFold | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| ccd_ | protocols::seeded_abinitio::CloseFold | private |
| cen_scorefxn_ | protocols::seeded_abinitio::CloseFold | private |
| chainbreakweights() | protocols::seeded_abinitio::CloseFold | private |
| chainbreakweights_ | protocols::seeded_abinitio::CloseFold | private |
| chains_ | protocols::seeded_abinitio::CloseFold | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::seeded_abinitio::CloseFold | virtual |
| CloseFold() | protocols::seeded_abinitio::CloseFold | |
| create() | protocols::moves::Mover | virtual |
| fa_scorefxn_ | protocols::seeded_abinitio::CloseFold | private |
| fast_loopclose(core::pose::Pose &pose, protocols::loops::LoopsOP const loops, bool kic) | protocols::seeded_abinitio::CloseFold | private |
| Filters_map typedef | protocols::moves::Mover | |
| find_loops(core::pose::Pose &pose, std::string secstr, core::Size offset, protocols::loops::Loops seeds) | protocols::seeded_abinitio::CloseFold | private |
| fragments_ | protocols::seeded_abinitio::CloseFold | private |
| fresh_instance() const | protocols::seeded_abinitio::CloseFold | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::seeded_abinitio::CloseFold | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_type() const | protocols::moves::Mover | inline |
| idealize_ | protocols::seeded_abinitio::CloseFold | private |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| initialize_fragments() | protocols::seeded_abinitio::CloseFold | private |
| is_cut(utility::vector1< Size > &cut_points, Size residue) | protocols::seeded_abinitio::CloseFold | private |
| kic_ | protocols::seeded_abinitio::CloseFold | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| library_ | protocols::seeded_abinitio::CloseFold | private |
| loops_ | protocols::seeded_abinitio::CloseFold | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| operator=(Mover const &other) | protocols::moves::Mover | |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &) | protocols::seeded_abinitio::CloseFold | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| quick_closure(core::pose::Pose &pose, protocols::loops::LoopsOP const loops) | protocols::seeded_abinitio::CloseFold | private |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| secstructure_ | protocols::seeded_abinitio::CloseFold | private |
| seed_vector_ | protocols::seeded_abinitio::CloseFold | private |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_trials(core::Size trials_quick_ccd) | protocols::seeded_abinitio::CloseFold | private |
| Strings typedef | protocols::moves::Mover | |
| TagPtr typedef | protocols::moves::Mover | |
| template_pdb_ | protocols::seeded_abinitio::CloseFold | private |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| trials() | protocols::seeded_abinitio::CloseFold | private |
| trials_ | protocols::seeded_abinitio::CloseFold | private |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| use_cutpoints() | protocols::seeded_abinitio::CloseFold | private |
| use_cutpoints(bool uc) | protocols::seeded_abinitio::CloseFold | private |
| use_cutpoints_ | protocols::seeded_abinitio::CloseFold | private |
| ~CloseFold() | protocols::seeded_abinitio::CloseFold | virtual |
| ~Mover() | protocols::moves::Mover | virtual |