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core::chemical::orbitals::AssignOrbitals Member List

This is the complete list of members for core::chemical::orbitals::AssignOrbitals, including all inherited members.

add_orbitals_to_restype(core::Size const atm_index2, core::Size const atm_index3, core::chemical::AtomType const &atmtype, std::string const atom_hybridization, utility::vector1< numeric::xyzVector< core::Real > > const orbital_xyz_vectors)core::chemical::orbitals::AssignOrbitals
Aindex_core::chemical::orbitals::AssignOrbitalsprivate
AObondedatoms_core::chemical::orbitals::AssignOrbitalsprivate
AOdist_core::chemical::orbitals::AssignOrbitalsprivate
AOhybridization_core::chemical::orbitals::AssignOrbitalsprivate
assign_only_pi_orbitals_to_atom(core::chemical::AtomType const &atmtype)core::chemical::orbitals::AssignOrbitals
assign_orbitals()core::chemical::orbitals::AssignOrbitals
assign_sp2_orbitals_to_one_bonded_atom(core::chemical::AtomType const &atmtype)core::chemical::orbitals::AssignOrbitals
assign_sp2_sp_orbitals_to_one_bonded_atom(core::chemical::AtomType const &atmtype)core::chemical::orbitals::AssignOrbitals
AssignOrbitals(core::chemical::ResidueTypeOP const restype)core::chemical::orbitals::AssignOrbitals
calculate_orbital_icoor(numeric::xyzVector< core::Real > const orbital_xyz, core::Size const atm_index1, core::Size const atm_index2, core::Size const atm_index3, std::string const orbital_element_name)core::chemical::orbitals::AssignOrbitals
Coordinates_Tetrahedral_bondedto3atoms_helper(core::Size const atm_index1, core::Size const atm_index2, core::Size const atm_index3, core::Size const atm_index4, core::Real const dist)core::chemical::orbitals::AssignOrbitals
Coordinates_TriganolPlanar_bondedto1atom_helper(core::Size const atm_index1, core::Size const atm_index2, core::Size const atm_index3, core::Real const dist)core::chemical::orbitals::AssignOrbitals
cross_product_helper(core::Size const atm_index1, core::Size const atm_index2, core::Size const atm_index3, core::Real const dist)core::chemical::orbitals::AssignOrbitals
make_orbital_element_name()core::chemical::orbitals::AssignOrbitalsprivate
make_orbital_type_name(AtomType const &atmtype, std::string const orbitaltype, core::Size const hybridization)core::chemical::orbitals::AssignOrbitalsprivate
n_orbitals_core::chemical::orbitals::AssignOrbitalsprivate
Orbtype_core::chemical::orbitals::AssignOrbitalsprivate
restype_core::chemical::orbitals::AssignOrbitalsprivate
set_orbital_type_and_bond(core::Size atom_index, std::string orbital_element_name, std::string orbital_type_full_name)core::chemical::orbitals::AssignOrbitalsprivate