core::io::raw_data::DecoyFileData Class Reference

#include <DecoyFileData.hh>

Inheritance diagram for core::io::raw_data::DecoyFileData:

Collaboration diagram for core::io::raw_data::DecoyFileData:

Public Member Functions
	DecoyFileData (std::string filename)
bool	write_struct (const DecoyStruct s, std::map< std::string, core::Real > const &score_map)
	write the given DecoyStruct to the supplied filename. More...
bool	write_pose (const core::pose::Pose &pose, std::map< std::string, core::Real > const &score_map, std::string tag, bool fullatom)
	write the given DecoyStruct to the supplied filename. More...
Public Member Functions inherited from core::io::raw_data::RawFileData
	RawFileData ()
virtual	~RawFileData ()
	Destructor. More...
int	size () const
	Returns the number of structures contained in this container. More...
int	nres () const
	Returns the number of residues in the first structure in this object. Not guaranteed to be fixed for all structures in this container. More...
std::string	sequence () const
	Returns the sequence of the first structure in this object. Not guaranteed to be fixed for all structures in this container. More...
void	clear_structure_map ()
	Remove all of the RawStruct objects from this object. More...
utility::vector1< std::string >	read_tags_fast (std::string const filename) const
	quickly read a list of tags from a silent-input file. Only checks lines beginning with SCORE: strings. More...
void	write_all (const std::string filename, std::map< std::string, core::Real > const &score_map)
	write all RawStruct objects in the structure_map_ to the given filename. More...
iterator	begin ()
	Returns an iterator to the start of the members of this container. More...
iterator	end ()
	Returns an iterator to the end of the members of this container. More...
const_iterator	begin_const () const
const_iterator	end_const () const

Private Attributes
std::string	filename_

Additional Inherited Members
Protected Attributes inherited from core::io::raw_data::RawFileData
StructureMap	structure_map_
std::string	sequence_

Detailed Description

Definition at line 35 of file DecoyFileData.hh.

Constructor & Destructor Documentation

core::io::raw_data::DecoyFileData::DecoyFileData ( std::string  filename)

inline

Definition at line 39 of file DecoyFileData.hh.

Member Function Documentation

bool core::io::raw_data::DecoyFileData::write_pose	(	const core::pose::Pose &	pose,
		std::map< std::string, core::Real > const &	score_map,
		std::string	tag = "empty_tag",
		bool	fullatom = false
	)

write the given DecoyStruct to the supplied filename.

Definition at line 65 of file DecoyFileData.cc.

References write_struct().

Referenced by protocols::jobdist::PlainRawJobDistributor::dump_pose_and_map().

bool core::io::raw_data::DecoyFileData::write_struct	(	const DecoyStruct	s,
		std::map< std::string, core::Real > const &	score_map
	)

write the given DecoyStruct to the supplied filename.

Definition at line 43 of file DecoyFileData.cc.

References protocols::swa::rna::file_exists(), filename_, core::io::raw_data::DecoyStruct::print_conformation(), core::io::raw_data::RawStruct::print_header(), and core::io::raw_data::RawStruct::print_scores().

Referenced by write_pose().

Member Data Documentation

std::string core::io::raw_data::DecoyFileData::filename_

private

Definition at line 54 of file DecoyFileData.hh.

Referenced by write_struct().

---

The documentation for this class was generated from the following files:

• src/core/io/raw_data/DecoyFileData.hh
• src/core/io/raw_data/DecoyFileData.cc