protocols::features::helixAssembly::HelicalFragment Class Reference

#include <HelicalFragment.hh>

Inheritance diagram for protocols::features::helixAssembly::HelicalFragment:

Collaboration diagram for protocols::features::helixAssembly::HelicalFragment:

Public Member Functions
	HelicalFragment (core::Size start, core::Size end)
	~HelicalFragment ()
core::Size	seq_start () const
core::Size	seq_end () const
core::Size	end () const
core::Size	start () const
core::Size	size () const
bool	reversed () const
void	principal_component (numeric::xyzVector< core::Real > principal_component)
numeric::xyzVector< core::Real >	principal_component () const
void	com (numeric::xyzVector< core::Real > com)
numeric::xyzVector< core::Real >	com () const
void	sasa (core::Real sasa)
core::Real	sasa () const

Private Attributes
core::Size	start_
core::Size	end_
std::string	pdb_source_
bool	direction_
core::Real	sasa_
numeric::xyzVector< core::Real >	com_
numeric::xyzVector< core::Real >	principal_component_

Friends
std::ostream &	operator<< (std::ostream &os, HelicalFragment const &t)
	output operator More...

Detailed Description

Definition at line 44 of file HelicalFragment.hh.

Constructor & Destructor Documentation

protocols::features::helixAssembly::HelicalFragment::HelicalFragment	(	core::Size	start,
		core::Size	end
	)

Definition at line 37 of file HelicalFragment.cc.

protocols::features::helixAssembly::HelicalFragment::~HelicalFragment

(

)

Definition at line 42 of file HelicalFragment.cc.

Member Function Documentation

void protocols::features::helixAssembly::HelicalFragment::com

(

numeric::xyzVector< core::Real >

com)

Definition at line 52 of file HelicalFragment.cc.

References com(), and com_.

numeric::xyzVector< core::Real > protocols::features::helixAssembly::HelicalFragment::com

(

)

const

Definition at line 51 of file HelicalFragment.cc.

References com_.

Referenced by com().

core::Size protocols::features::helixAssembly::HelicalFragment::end

(

)

const

Definition at line 47 of file HelicalFragment.cc.

References end_.

Referenced by protocols::features::helixAssembly::operator<<().

void protocols::features::helixAssembly::HelicalFragment::principal_component

(

numeric::xyzVector< core::Real >

principal_component)

Definition at line 58 of file HelicalFragment.cc.

References principal_component(), and principal_component_.

Referenced by principal_component().

numeric::xyzVector< core::Real > protocols::features::helixAssembly::HelicalFragment::principal_component

(

)

const

Definition at line 57 of file HelicalFragment.cc.

References principal_component_.

bool protocols::features::helixAssembly::HelicalFragment::reversed

(

)

const

Definition at line 49 of file HelicalFragment.cc.

References end_, and start_.

void protocols::features::helixAssembly::HelicalFragment::sasa

(

core::Real

sasa)

Definition at line 64 of file HelicalFragment.cc.

References sasa(), and sasa_.

Referenced by sasa().

core::Real protocols::features::helixAssembly::HelicalFragment::sasa

(

)

const

Definition at line 63 of file HelicalFragment.cc.

References sasa_.

core::Size protocols::features::helixAssembly::HelicalFragment::seq_end

(

)

const

Definition at line 48 of file HelicalFragment.cc.

References end_, and start_.

core::Size protocols::features::helixAssembly::HelicalFragment::seq_start

(

)

const

Definition at line 45 of file HelicalFragment.cc.

References end_, and start_.

core::Size protocols::features::helixAssembly::HelicalFragment::size

(

)

const

Definition at line 69 of file HelicalFragment.cc.

References end_, and start_.

core::Size protocols::features::helixAssembly::HelicalFragment::start

(

)

const

Definition at line 44 of file HelicalFragment.cc.

References start_.

Referenced by protocols::features::helixAssembly::operator<<().

Friends And Related Function Documentation

std::ostream& operator<< ( std::ostream &  os, HelicalFragment const &  t  )

friend

output operator

Definition at line 75 of file HelicalFragment.cc.

Member Data Documentation

numeric::xyzVector<core::Real> protocols::features::helixAssembly::HelicalFragment::com_

private

Definition at line 78 of file HelicalFragment.hh.

Referenced by com().

bool protocols::features::helixAssembly::HelicalFragment::direction_

private

Definition at line 76 of file HelicalFragment.hh.

core::Size protocols::features::helixAssembly::HelicalFragment::end_

private

Definition at line 74 of file HelicalFragment.hh.

Referenced by end(), reversed(), seq_end(), seq_start(), and size().

std::string protocols::features::helixAssembly::HelicalFragment::pdb_source_

private

Definition at line 75 of file HelicalFragment.hh.

numeric::xyzVector<core::Real> protocols::features::helixAssembly::HelicalFragment::principal_component_

private

Definition at line 79 of file HelicalFragment.hh.

Referenced by principal_component().

core::Real protocols::features::helixAssembly::HelicalFragment::sasa_

private

Definition at line 77 of file HelicalFragment.hh.

Referenced by sasa().

core::Size protocols::features::helixAssembly::HelicalFragment::start_

private

Definition at line 73 of file HelicalFragment.hh.

Referenced by reversed(), seq_end(), seq_start(), size(), and start().

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The documentation for this class was generated from the following files:

• src/protocols/features/helixAssembly/HelicalFragment.hh
• src/protocols/features/helixAssembly/HelicalFragment.cc