scoring → kinematics Relation

File in src/core/scoring	Includes file in src/core/kinematics
constraints / AmbiguousNMRDistanceConstraint.cc	ShortestPathInFoldTree.hh
constraints / AmbiguousNMRDistanceConstraint.hh	ShortestPathInFoldTree.fwd.hh
constraints / AtomPairConstraint.cc	AtomTree.hh
constraints / AtomPairConstraint.cc	ShortestPathInFoldTree.hh
constraints / AtomPairConstraint.hh	ShortestPathInFoldTree.fwd.hh
constraints / BackboneStubConstraint.cc	Jump.hh
dna / base_geometry.cc	Stub.hh
dna / base_geometry.hh	Stub.fwd.hh
etable / BaseEtableEnergy.hh	DomainMap.fwd.hh
etable / BaseEtableEnergy.hh	MinimizerMapBase.fwd.hh
etable / BaseEtableEnergy.tmpl.hh	tree / Atom.fwd.hh
etable / BaseEtableEnergy.tmpl.hh	tree / Atom.hh
etable / BaseEtableEnergy.tmpl.hh	AtomPointer.fwd.hh
etable / BaseEtableEnergy.tmpl.hh	AtomTree.fwd.hh
etable / BaseEtableEnergy.tmpl.hh	AtomTree.hh
etable / BaseEtableEnergy.tmpl.hh	AtomWithDOFChange.fwd.hh
etable / BaseEtableEnergy.tmpl.hh	DomainMap.fwd.hh
etable / BaseEtableEnergy.tmpl.hh	Edge.fwd.hh
etable / BaseEtableEnergy.tmpl.hh	Edge.hh
etable / BaseEtableEnergy.tmpl.hh	FoldTree.fwd.hh
etable / BaseEtableEnergy.tmpl.hh	FoldTree.hh
etable / BaseEtableEnergy.tmpl.hh	Jump.fwd.hh
etable / BaseEtableEnergy.tmpl.hh	Jump.hh
etable / BaseEtableEnergy.tmpl.hh	MinimizerMapBase.fwd.hh
etable / BaseEtableEnergy.tmpl.hh	MinimizerMapBase.hh
etable / BaseEtableEnergy.tmpl.hh	MoveMap.fwd.hh
etable / BaseEtableEnergy.tmpl.hh	ResidueCoordinateChangeList.fwd.hh
etable / BaseEtableEnergy.tmpl.hh	RT.fwd.hh
etable / BaseEtableEnergy.tmpl.hh	RT.hh
etable / BaseEtableEnergy.tmpl.hh	Stub.fwd.hh
etable / BaseEtableEnergy.tmpl.hh	Stub.hh
methods / CartesianBondedEnergy.cc	AtomTree.hh
methods / CartesianBondedEnergy.cc	FoldTree.hh
methods / CartesianBondedEnergy.hh	DomainMap.fwd.hh
methods / chainbreak_util.cc	FoldTree.hh
methods / chainbreak_util.hh	FoldTree.fwd.hh
methods / ChainbreakEnergy.cc	FoldTree.hh
ChemicalShiftAnisotropy.cc	FoldTree.hh
packing / compute_holes_score.hh	Jump.hh
packing / compute_holes_score_res.hh	Jump.hh
constraints / Constraint.hh	ShortestPathInFoldTree.fwd.hh
constraints / ConstraintsEnergy.hh	MinimizerMapBase.fwd.hh
constraints / ConstraintSet.hh	MinimizerMapBase.fwd.hh
interface / DDPscore.cc	Jump.hh
DipolarCoupling.cc	FoldTree.hh
methods / DistanceChainbreakEnergy.cc	FoldTree.hh
disulfides / DisulfideMatchingDatabase.cc	Jump.hh
disulfides / DisulfideMatchingDatabase.cc	RT.hh
disulfides / DisulfideMatchingDatabase.hh	RT.hh
disulfides / DisulfideMatchingPotential.cc	FoldTree.hh
disulfides / DisulfideMatchingPotential.cc	RT.hh
methods / DNA_BaseEnergy.hh	DomainMap.fwd.hh
dna / DNA_BasePotential.cc	Stub.hh
DockingScoreFunction.cc	Jump.hh
electron_density / ElecDensAllAtomCenEnergy.cc	Edge.hh
electron_density / ElecDensAllAtomCenEnergy.cc	FoldTree.hh
electron_density_atomwise / ElecDensAtomwiseEnergy.cc	Edge.hh
electron_density_atomwise / ElecDensAtomwiseEnergy.cc	FoldTree.hh
electron_density / ElecDensCenEnergy.cc	Edge.hh
electron_density / ElecDensCenEnergy.cc	FoldTree.hh
electron_density / ElecDensEnergy.cc	Edge.hh
electron_density / ElecDensEnergy.cc	FoldTree.hh
electron_density / ElectronDensity.cc	Edge.hh
electron_density / ElectronDensity.cc	FoldTree.hh
electron_density / ElectronDensity.hh	RT.hh
electron_density_atomwise / ElectronDensityAtomwise.cc	Edge.hh
electron_density_atomwise / ElectronDensityAtomwise.cc	FoldTree.hh
electron_density_atomwise / ElectronDensityAtomwise.cc	RT.hh
electron_density_atomwise / ElectronDensityAtomwise.hh	RT.hh
Energies.hh	DomainMap.fwd.hh
methods / EnergyMethod.hh	DomainMap.fwd.hh
methods / EnergyMethod.hh	MinimizerMapBase.fwd.hh
geometric_solvation / ExactOccludedHbondSolEnergy.cc	FoldTree.hh
geometric_solvation / ExactOccludedHbondSolEnergy.cc	Jump.hh
methods / FACTSEnergy.hh	DomainMap.fwd.hh
FACTSPotential.hh	DomainMap.fwd.hh
electron_density / FastDensEnergy.cc	Edge.hh
electron_density / FastDensEnergy.cc	FoldTree.hh
custom_pair_distance / FullatomCustomPairDistanceEnergy.hh	MinimizerMapBase.fwd.hh
disulfides / FullatomDisulfideEnergy.hh	MinimizerMapBase.fwd.hh
methods / GaussianOverlapEnergy.hh	DomainMap.fwd.hh
methods / GenBornEnergy.hh	DomainMap.fwd.hh
GenBornPotential.hh	DomainMap.fwd.hh
hackaro / HackAroEnergy.cc	Stub.hh
hackaro / HackAroEnergy.hh	Stub.fwd.hh
hackelec / HackElecEnergy.cc	MinimizerMapBase.hh
constraints / KofNConstraint.cc	ShortestPathInFoldTree.fwd.hh
packstat / LeeRichards.hh	Jump.hh
methods / LinearChainbreakEnergy.cc	tree / Atom.hh
methods / LinearChainbreakEnergy.cc	AtomTree.hh
methods / LinearChainbreakEnergy.cc	FoldTree.hh
methods / LinearChainbreakEnergy.cc	ShortestPathInFoldTree.hh
methods / LinearChainbreakEnergy.hh	ShortestPathInFoldTree.fwd.hh
methods / LK_BallInfo.cc	Stub.hh
constraints / LocalCoordinateConstraint.hh	Jump.hh
constraints / LocalCoordinateConstraint.hh	Stub.hh
methods / MembraneCbetaEnergy.cc	Jump.hh
MinimizationGraph.hh	MinimizerMapBase.fwd.hh
MinScoreScoreFunction.cc	Jump.hh
methods / MMBondAngleEnergy.hh	DomainMap.fwd.hh
methods / MMBondLengthEnergy.hh	DomainMap.fwd.hh
methods / MMLJEnergyInter.cc	MinimizerMapBase.hh
methods / MMLJEnergyIntra.cc	MinimizerMapBase.hh
methods / MMTorsionEnergy.hh	DomainMap.fwd.hh
sc / MolecularSurfaceCalculator.cc	FoldTree.hh
sc / MolecularSurfaceCalculator.cc	Jump.hh
constraints / MultiConstraint.hh	ShortestPathInFoldTree.fwd.hh
NeighborList.hh	DomainMap.fwd.hh
NeighborList.tmpl.hh	tree / Atom.fwd.hh
NeighborList.tmpl.hh	tree / Atom.hh
NeighborList.tmpl.hh	AtomPointer.fwd.hh
NeighborList.tmpl.hh	AtomTree.fwd.hh
NeighborList.tmpl.hh	AtomTree.hh
NeighborList.tmpl.hh	AtomWithDOFChange.fwd.hh
NeighborList.tmpl.hh	DomainMap.fwd.hh
NeighborList.tmpl.hh	Edge.fwd.hh
NeighborList.tmpl.hh	Edge.hh
NeighborList.tmpl.hh	FoldTree.fwd.hh
NeighborList.tmpl.hh	FoldTree.hh
NeighborList.tmpl.hh	Jump.fwd.hh
NeighborList.tmpl.hh	Jump.hh
NeighborList.tmpl.hh	MinimizerMapBase.fwd.hh
NeighborList.tmpl.hh	MoveMap.fwd.hh
NeighborList.tmpl.hh	ResidueCoordinateChangeList.fwd.hh
NeighborList.tmpl.hh	RT.fwd.hh
NeighborList.tmpl.hh	RT.hh
NeighborList.tmpl.hh	Stub.fwd.hh
NeighborList.tmpl.hh	Stub.hh
geometric_solvation / non_scorefxn_exact_model.cc	Jump.hh
nv / NVscore.cc	Jump.hh
nv / NVscore.hh	MinimizerMapBase.fwd.hh
methods / OneBodyEnergy.hh	MinimizerMapBase.fwd.hh
orbitals / OrbitalsScore.cc	Jump.hh
methods / P_AA_pp_Energy.cc	Jump.hh
electron_density / PattersonCorrEnergy.cc	Edge.hh
electron_density / PattersonCorrEnergy.cc	FoldTree.hh
methods / PeptideBondEnergy.hh	DomainMap.fwd.hh
methods / ProClosureEnergy.hh	DomainMap.fwd.hh
ResidualDipolarCoupling.cc	FoldTree.hh
methods / ResidualDipolarCouplingEnergy.hh	MinimizerMapBase.fwd.hh
constraints / ResidueTypeLinkingConstraint.cc	Jump.hh
rms_util.cc	FoldTree.hh
rms_util.tmpl.hh	tree / Atom.fwd.hh
rms_util.tmpl.hh	tree / Atom.hh
rms_util.tmpl.hh	AtomPointer.fwd.hh
rms_util.tmpl.hh	AtomTree.fwd.hh
rms_util.tmpl.hh	AtomTree.hh
rms_util.tmpl.hh	AtomWithDOFChange.fwd.hh
rms_util.tmpl.hh	DomainMap.fwd.hh
rms_util.tmpl.hh	Edge.fwd.hh
rms_util.tmpl.hh	Edge.hh
rms_util.tmpl.hh	FoldTree.fwd.hh
rms_util.tmpl.hh	FoldTree.hh
rms_util.tmpl.hh	Jump.fwd.hh
rms_util.tmpl.hh	Jump.hh
rms_util.tmpl.hh	MinimizerMapBase.fwd.hh
rms_util.tmpl.hh	ResidueCoordinateChangeList.fwd.hh
rms_util.tmpl.hh	RT.fwd.hh
rms_util.tmpl.hh	RT.hh
rms_util.tmpl.hh	Stub.fwd.hh
rms_util.tmpl.hh	Stub.hh
rna / RNA_CentroidInfo.hh	Stub.hh
rna / chemical_shift / RNA_CS_Parameters.hh	DomainMap.fwd.hh
rna / chemical_shift / RNA_CS_Util.hh	DomainMap.fwd.hh
rna / RNA_LowResolutionPotential.hh	Stub.fwd.hh
rna / RNA_PairwiseLowResolutionEnergy.hh	Stub.fwd.hh
rna / RNA_ScoringInfo.hh	Stub.fwd.hh
rna / RNA_TorsionPotential.cc	FoldTree.hh
rna / RNA_TorsionPotential.cc	MinimizerMapBase.fwd.hh
rna / RNA_Util.cc	tree / Atom.hh
rna / RNA_Util.cc	AtomPointer.fwd.hh
rna / RNA_Util.cc	AtomTree.hh
rna / RNA_Util.cc	FoldTree.hh
rna / RNA_Util.cc	Stub.hh
rna / RNA_Util.hh	Stub.hh
saxs / SAXSEnergyFA.hh	DomainMap.fwd.hh
saxs / SAXSEnergyFA.hh	MinimizerMapBase.fwd.hh
ScoreFunction.cc	MinimizerMapBase.hh
ScoreFunction.hh	DomainMap.fwd.hh
ScoreFunction.hh	MinimizerMapBase.fwd.hh
dna / scoring.hh	Stub.fwd.hh
SecondaryStructurePotential.cc	FoldTree.hh
sc / ShapeComplementarityCalculator.cc	FoldTree.hh
sc / ShapeComplementarityCalculator.cc	Jump.hh
methods / SmoothCenPairEnergy.cc	Jump.hh
methods / SmoothEnvEnergy.cc	Jump.hh
methods / SuckerEnergy.hh	DomainMap.fwd.hh
packing / surf_vol.cc	Jump.hh
sym_e / symE.cc	Jump.hh
methods / SymmetricLigandEnergy.hh	DomainMap.fwd.hh
symmetry / SymmetricScoreFunction.cc	MinimizerMapBase.hh
methods / TwoBodyEnergy.hh	MinimizerMapBase.fwd.hh
constraints / util.hh	ShortestPathInFoldTree.fwd.hh
methods / YHHPlanarityEnergy.cc	Jump.hh