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protocols → core Relation

File in src/protocolsIncludes file in src/core
fldsgn / potentials / AACompositionEnergy.ccscoring / EnergyMap.hh
fldsgn / potentials / AACompositionEnergy.ccscoring / methods / EnergyMethod.hh
fldsgn / potentials / AACompositionEnergy.ccpose / Pose.hh
fldsgn / potentials / AACompositionEnergy.ccconformation / Residue.hh
fldsgn / potentials / AACompositionEnergy.ccscoring / ScoreType.hh
fldsgn / potentials / AACompositionEnergy.hhchemical / AA.hh
fldsgn / potentials / AACompositionEnergy.hhscoring / methods / ContextDependentOneBodyEnergy.hh
fldsgn / potentials / AACompositionEnergy.hhid / DOF_ID.fwd.hh
fldsgn / potentials / AACompositionEnergy.hhscoring / EnergyMap.fwd.hh
fldsgn / potentials / AACompositionEnergy.hhscoring / methods / EnergyMethod.fwd.hh
fldsgn / potentials / AACompositionEnergy.hhpose / Pose.fwd.hh
fldsgn / potentials / AACompositionEnergy.hhscoring / ScoreFunction.fwd.hh
fldsgn / potentials / AACompositionEnergy.hhscoring / ScoreType.hh
fldsgn / potentials / AACompositionEnergy.hhid / TorsionID.fwd.hh
fldsgn / potentials / AACompositionEnergy.hhtypes.hh
fldsgn / potentials / AACompositionEnergyCreator.hhscoring / methods / EnergyMethodCreator.hh
fldsgn / potentials / AACompositionEnergyCreator.hhscoring / methods / EnergyMethodOptions.fwd.hh
fldsgn / potentials / AACompositionEnergyCreator.hhscoring / ScoreType.hh
antibody2 / Ab_TemplateInfo.ccimport_pose / import_pose.hh
antibody2 / Ab_TemplateInfo.ccpose / PDBInfo.fwd.hh
antibody2 / Ab_TemplateInfo.ccpose / PDBInfo.hh
antibody2 / Ab_TemplateInfo.hhpose / Pose.hh
frag_picker / quota / ABEGO_SS_Config.cctypes.hh
frag_picker / quota / ABEGO_SS_Config.hhtypes.hh
frag_picker / quota / ABEGO_SS_Map.cctypes.hh
frag_picker / quota / ABEGO_SS_Map.hhtypes.hh
frag_picker / quota / ABEGO_SS_Pool.cctypes.hh
frag_picker / quota / ABEGO_SS_Pool.hhtypes.hh
frag_picker / scores / ABEGO_SS_Score.ccfragment / SecondaryStructure.hh
frag_picker / scores / ABEGO_SS_Score.cctypes.hh
frag_picker / scores / ABEGO_SS_Score.hhtypes.hh
simple_filters / AbinitioBaseFilter.ccconformation / Conformation.hh
simple_filters / AbinitioBaseFilter.ccpose / Pose.hh
simple_filters / AbinitioBaseFilter.ccconformation / Residue.hh
simple_filters / AbinitioBaseFilter.ccpose / util.hh
simple_filters / AbinitioBaseFilter.hhpose / Pose.fwd.hh
simple_filters / AbinitioBaseFilter.hhtypes.hh
topology_broker / weights / AbinitioMoverWeight.hhtypes.hh
abinitio / AbrelaxApplication.ccpose / annotated_sequence.hh
abinitio / AbrelaxApplication.ccfragment / BBTorsionSRFD.hh
abinitio / AbrelaxApplication.ccscoring / constraints / BoundConstraint.hh
abinitio / AbrelaxApplication.ccpose / datacache / CacheableDataType.hh
abinitio / AbrelaxApplication.ccpose / metrics / CalculatorFactory.hh
abinitio / AbrelaxApplication.ccchemical / ChemicalManager.hh
abinitio / AbrelaxApplication.ccconformation / Conformation.hh
abinitio / AbrelaxApplication.ccscoring / constraints / ConstraintFactory.hh
abinitio / AbrelaxApplication.ccscoring / constraints / ConstraintIO.hh
abinitio / AbrelaxApplication.ccscoring / constraints / ConstraintSet.hh
abinitio / AbrelaxApplication.ccscoring / methods / ContactOrderEnergy.hh
abinitio / AbrelaxApplication.ccio / raw_data / DisulfideFile.hh
abinitio / AbrelaxApplication.ccscoring / Energies.hh
abinitio / AbrelaxApplication.ccfragment / FragData.hh
abinitio / AbrelaxApplication.ccfragment / FragmentIO.hh
abinitio / AbrelaxApplication.ccfragment / Frame.hh
abinitio / AbrelaxApplication.ccfragment / FrameIterator.hh
abinitio / AbrelaxApplication.ccfragment / FrameIteratorWorker_.hh
abinitio / AbrelaxApplication.ccfragment / FrameList.hh
abinitio / AbrelaxApplication.ccscoring / constraints / Func.hh
abinitio / AbrelaxApplication.ccscoring / constraints / FuncFactory.hh
abinitio / AbrelaxApplication.ccscoring / constraints / HarmonicFunc.hh
abinitio / AbrelaxApplication.ccimport_pose / import_pose.hh
abinitio / AbrelaxApplication.ccscoring / MembraneTopology.hh
abinitio / AbrelaxApplication.cckinematics / MoveMap.hh
abinitio / AbrelaxApplication.ccscoring / dssp / PairingsList.hh
abinitio / AbrelaxApplication.ccpose / Pose.hh
abinitio / AbrelaxApplication.ccscoring / ScoreFunction.fwd.hh
abinitio / AbrelaxApplication.ccscoring / ScoreFunctionFactory.hh
abinitio / AbrelaxApplication.ccscoring / ScoreType.hh
abinitio / AbrelaxApplication.ccfragment / SecondaryStructure.hh
abinitio / AbrelaxApplication.ccsequence / Sequence.hh
abinitio / AbrelaxApplication.ccid / SequenceMapping.hh
abinitio / AbrelaxApplication.ccio / silent / silent.fwd.hh
abinitio / AbrelaxApplication.ccio / silent / SilentFileData.hh
abinitio / AbrelaxApplication.ccio / silent / SilentStructFactory.hh
abinitio / AbrelaxApplication.ccscoring / SS_Killhairpins_Info.hh
abinitio / AbrelaxApplication.ccscoring / dssp / StrandPairing.hh
abinitio / AbrelaxApplication.ccutil / SwitchResidueTypeSet.hh
abinitio / AbrelaxApplication.cctypes.hh
abinitio / AbrelaxApplication.ccsequence / util.hh
abinitio / AbrelaxApplication.ccscoring / constraints / util.hh
abinitio / AbrelaxApplication.ccfragment / util.hh
abinitio / AbrelaxApplication.ccpose / util.hh
abinitio / AbrelaxApplication.cckinematics / util.hh
abinitio / AbrelaxApplication.hhscoring / constraints / ConstraintSet.fwd.hh
abinitio / AbrelaxApplication.hhfragment / FragSet.fwd.hh
abinitio / AbrelaxApplication.hhpose / Pose.fwd.hh
abinitio / AbrelaxApplication.hhscoring / ScoreFunction.fwd.hh
abinitio / AbrelaxApplication.hhfragment / SecondaryStructure.fwd.hh
abinitio / AbrelaxApplication.hhio / silent / SilentFileData.fwd.hh
abinitio / AbrelaxApplication.hhtypes.hh
abinitio / AbrelaxMover.ccscoring / constraints / ConstraintSet.hh
abinitio / AbrelaxMover.cckinematics / FoldTree.hh
abinitio / AbrelaxMover.cckinematics / MoveMap.hh
abinitio / AbrelaxMover.ccpose / Pose.hh
abinitio / AbrelaxMover.ccscoring / ScoreFunction.hh
abinitio / AbrelaxMover.ccscoring / ScoreFunctionFactory.hh
abinitio / AbrelaxMover.cckinematics / ShortestPathInFoldTree.hh
abinitio / AbrelaxMover.hhpose / Pose.fwd.hh
abinitio / AbrelaxMover.hhtypes.hh
match / downstream / ActiveSiteGrid.ccconformation / Residue.hh
match / downstream / ActiveSiteGrid.hhconformation / Residue.fwd.hh
match / downstream / ActiveSiteGrid.hhtypes.hh
frag_picker / scores / AdaptiveScoreHistogram.hhtypes.hh
domain_assembly / AddAssemblyConstraints.ccscoring / constraints / AtomPairConstraint.hh
domain_assembly / AddAssemblyConstraints.ccscoring / constraints / Constraint.hh
domain_assembly / AddAssemblyConstraints.ccscoring / constraints / ConstraintSet.hh
domain_assembly / AddAssemblyConstraints.ccscoring / constraints / Func.hh
domain_assembly / AddAssemblyConstraints.cckinematics / Jump.hh
domain_assembly / AddAssemblyConstraints.ccscoring / constraints / LinearPenaltyFunction.hh
domain_assembly / AddAssemblyConstraints.ccpose / PDBInfo.hh
domain_assembly / AddAssemblyConstraints.ccpose / Pose.hh
domain_assembly / AddAssemblyConstraints.ccconformation / Residue.hh
domain_assembly / AddAssemblyConstraints.cctypes.hh
domain_assembly / AddAssemblyConstraints.hhtypes.hh
simple_moves / AddCavitiesMover.ccchemical / AA.hh
simple_moves / AddCavitiesMover.ccpose / datacache / CacheableDataType.hh
simple_moves / AddCavitiesMover.ccpose / datacache / CacheablePoseRawPtr.hh
simple_moves / AddCavitiesMover.ccchemical / ChemicalManager.hh
simple_moves / AddCavitiesMover.ccscoring / packstat / compute_sasa.hh
simple_moves / AddCavitiesMover.ccscoring / constraints / CoordinateConstraint.hh
simple_moves / AddCavitiesMover.ccscoring / constraints / Func.hh
simple_moves / AddCavitiesMover.ccscoring / constraints / HarmonicFunc.hh
simple_moves / AddCavitiesMover.ccpose / Pose.hh
simple_moves / AddCavitiesMover.ccconformation / Residue.hh
simple_moves / AddCavitiesMover.ccconformation / ResidueFactory.hh
simple_moves / AddCavitiesMover.ccchemical / ResidueTypeSet.hh
simple_moves / AddCavitiesMover.ccscoring / packstat / types.hh
simple_moves / AddCavitiesMover.hhscoring / packstat / CavityBall.hh
simple_moves / AddCavitiesMover.hhscoring / packstat / compute_sasa.hh
simple_moves / AddCavitiesMover.hhconformation / Residue.fwd.hh
simple_moves / AddCavitiesMover.hhscoring / packstat / types.hh
protein_interface_design / movers / AddChainBreak.cckinematics / FoldTree.hh
protein_interface_design / movers / AddChainBreak.ccpose / Pose.hh
protein_interface_design / movers / AddChainBreak.ccpose / selection.hh
protein_interface_design / movers / AddChainBreak.ccpose / util.hh
protein_interface_design / movers / AddChainBreak.ccchemical / VariantType.hh
protein_interface_design / movers / AddChainBreak.hhpose / Pose.fwd.hh
protein_interface_design / movers / AddChainBreak.hhtypes.hh
simple_moves / AddConstraintsToCurrentConformationMover.ccscoring / constraints / AtomPairConstraint.hh
simple_moves / AddConstraintsToCurrentConformationMover.ccscoring / constraints / BoundConstraint.hh
simple_moves / AddConstraintsToCurrentConformationMover.ccscoring / constraints / Constraint.hh
simple_moves / AddConstraintsToCurrentConformationMover.ccscoring / constraints / CoordinateConstraint.hh
simple_moves / AddConstraintsToCurrentConformationMover.cckinematics / FoldTree.hh
simple_moves / AddConstraintsToCurrentConformationMover.ccscoring / constraints / HarmonicFunc.hh
simple_moves / AddConstraintsToCurrentConformationMover.ccpose / Pose.hh
simple_moves / AddConstraintsToCurrentConformationMover.ccconformation / Residue.hh
simple_moves / AddConstraintsToCurrentConformationMover.ccconformation / ResidueFactory.hh
simple_moves / AddConstraintsToCurrentConformationMover.ccchemical / ResidueType.hh
simple_moves / AddConstraintsToCurrentConformationMover.ccchemical / ResidueTypeSet.hh
simple_moves / AddConstraintsToCurrentConformationMover.ccscoring / constraints / ScalarWeightedFunc.hh
simple_moves / AddConstraintsToCurrentConformationMover.ccscoring / constraints / SOGFunc.hh
simple_moves / AddConstraintsToCurrentConformationMover.ccpack / task / TaskFactory.hh
simple_moves / AddConstraintsToCurrentConformationMover.ccpack / task / operation / TaskOperation.hh
simple_moves / AddConstraintsToCurrentConformationMover.ccpose / util.hh
simple_moves / AddConstraintsToCurrentConformationMover.hhpack / task / TaskFactory.fwd.hh
ligand_docking / AddHydrogen.ccchemical / ChemicalManager.hh
ligand_docking / AddHydrogen.cckinematics / Jump.hh
ligand_docking / AddHydrogen.ccchemical / PatchOperation.hh
ligand_docking / AddHydrogen.ccpose / Pose.hh
ligand_docking / AddHydrogen.ccconformation / Residue.hh
ligand_docking / AddHydrogen.ccchemical / ResidueConnection.hh
ligand_docking / AddHydrogen.ccchemical / ResidueTypeSet.hh
ligand_docking / AddHydrogen.cctypes.hh
ligand_docking / AddHydrogen.hhpose / Pose.fwd.hh
ligand_docking / AddHydrogens.ccconformation / Conformation.hh
ligand_docking / AddHydrogens.ccpose / Pose.hh
ligand_docking / AddHydrogens.cctypes.hh
ligand_docking / AddHydrogens.ccpose / util.hh
ligand_docking / AddHydrogens.hhpose / Pose.fwd.hh
constraints_additional / AdditionalConstraintCreators.ccscoring / constraints / NamedAtomPairConstraint.hh
constraints_additional / AdditionalConstraintCreators.hhscoring / constraints / ConstraintCreator.hh
enzdes / AddLigandMotifRotamersOperationCreator.hhpack / task / operation / TaskOperationCreator.hh
enzdes / AddorRemoveCsts.ccchemical / ChemicalManager.hh
enzdes / AddorRemoveCsts.ccscoring / ScoreFunction.hh
enzdes / AddorRemoveCsts.hhpose / Pose.fwd.hh
enzdes / AddorRemoveCsts.hhscoring / ScoreFunction.fwd.hh
enzdes / AddorRemoveCsts.hhtypes.hh
enzdes / AddRigidBodyLigandConfsCreator.hhpack / task / operation / TaskOperationCreator.hh
protein_interface_design / movers / AddSidechainConstraintsToHotspots.ccconformation / Conformation.hh
protein_interface_design / movers / AddSidechainConstraintsToHotspots.ccscoring / constraints / Constraint.hh
protein_interface_design / movers / AddSidechainConstraintsToHotspots.cckinematics / FoldTree.hh
protein_interface_design / movers / AddSidechainConstraintsToHotspots.ccpose / Pose.hh
protein_interface_design / movers / AddSidechainConstraintsToHotspots.ccconformation / Residue.hh
protein_interface_design / movers / AddSidechainConstraintsToHotspots.ccpose / selection.hh
protein_interface_design / movers / AddSidechainConstraintsToHotspots.hhpose / Pose.fwd.hh
protein_interface_design / movers / AddSidechainConstraintsToHotspots.hhtypes.hh
simple_filters / AlaScan.ccchemical / AA.hh
simple_filters / AlaScan.ccchemical / AtomType.hh
simple_filters / AlaScan.ccchemical / ChemicalManager.fwd.hh
simple_filters / AlaScan.ccconformation / Conformation.hh
simple_filters / AlaScan.ccscoring / Energies.hh
simple_filters / AlaScan.cckinematics / FoldTree.hh
simple_filters / AlaScan.ccpack / pack_rotamers.hh
simple_filters / AlaScan.ccpack / task / PackerTask.hh
simple_filters / AlaScan.ccpose / PDBInfo.hh
simple_filters / AlaScan.ccpose / Pose.hh
simple_filters / AlaScan.ccscoring / ScoreFunction.hh
simple_filters / AlaScan.ccscoring / ScoreFunctionFactory.hh
simple_filters / AlaScan.ccscoring / ScoreType.hh
simple_filters / AlaScan.ccscoring / ScoreTypeManager.hh
simple_filters / AlaScan.ccutil / SwitchResidueTypeSet.hh
simple_filters / AlaScan.ccconformation / symmetry / SymmetricConformation.hh
simple_filters / AlaScan.ccscoring / symmetry / SymmetricScoreFunction.hh
simple_filters / AlaScan.ccconformation / symmetry / SymmetryInfo.hh
simple_filters / AlaScan.ccpack / task / TaskFactory.hh
simple_filters / AlaScan.cctypes.hh
simple_filters / AlaScan.ccpose / symmetry / util.hh
simple_filters / AlaScan.hhpose / Pose.fwd.hh
simple_filters / AlaScan.hhscoring / ScoreFunction.hh
simple_filters / AlaScan.hhscoring / ScoreType.hh
simple_filters / AlaScan.hhtypes.hh
comparative_modeling / Align_RmsdEvaluator.ccpose / Pose.hh
comparative_modeling / Align_RmsdEvaluator.ccscoring / rms_util.hh
comparative_modeling / Align_RmsdEvaluator.ccsequence / Sequence.hh
comparative_modeling / Align_RmsdEvaluator.ccsequence / SequenceAlignment.hh
comparative_modeling / Align_RmsdEvaluator.ccid / SequenceMapping.hh
comparative_modeling / Align_RmsdEvaluator.ccio / silent / SilentStruct.hh
comparative_modeling / Align_RmsdEvaluator.hhpose / Pose.fwd.hh
comparative_modeling / Align_RmsdEvaluator.hhsequence / SequenceAlignment.fwd.hh
comparative_modeling / Align_RmsdEvaluator.hhio / silent / silent.fwd.hh
comparative_modeling / Align_RmsdEvaluator.hhtypes.hh
comparative_modeling / Align_RotamerEvaluator.ccpack / dunbrack / DunbrackRotamer.fwd.hh
comparative_modeling / Align_RotamerEvaluator.ccpose / Pose.hh
comparative_modeling / Align_RotamerEvaluator.ccchemical / ResidueType.hh
comparative_modeling / Align_RotamerEvaluator.ccpack / dunbrack / RotamerLibrary.hh
comparative_modeling / Align_RotamerEvaluator.ccsequence / Sequence.hh
comparative_modeling / Align_RotamerEvaluator.ccsequence / SequenceAlignment.hh
comparative_modeling / Align_RotamerEvaluator.ccid / SequenceMapping.hh
comparative_modeling / Align_RotamerEvaluator.ccio / silent / SilentStruct.hh
comparative_modeling / Align_RotamerEvaluator.hhpose / Pose.fwd.hh
comparative_modeling / Align_RotamerEvaluator.hhsequence / SequenceAlignment.fwd.hh
comparative_modeling / Align_RotamerEvaluator.hhio / silent / silent.fwd.hh
comparative_modeling / Align_RotamerEvaluator.hhtypes.hh
evaluation / AlignEvaluator.ccpose / Pose.hh
evaluation / AlignEvaluator.ccchemical / ResidueType.hh
evaluation / AlignEvaluator.ccsequence / Sequence.hh
evaluation / AlignEvaluator.ccsequence / SequenceAlignment.hh
evaluation / AlignEvaluator.ccid / SequenceMapping.hh
evaluation / AlignEvaluator.ccio / silent / SilentStruct.hh
evaluation / AlignEvaluator.ccid / types.hh
evaluation / AlignEvaluator.ccsequence / util.hh
evaluation / AlignEvaluator.hhpose / Pose.fwd.hh
evaluation / AlignEvaluator.hhsequence / SequenceAlignment.fwd.hh
evaluation / AlignEvaluator.hhio / silent / SilentStruct.fwd.hh
evaluation / AlignEvaluator.hhtypes.hh
comparative_modeling / AlignmentClustering.ccpose / annotated_sequence.hh
comparative_modeling / AlignmentClustering.cckinematics / FoldTree.hh
comparative_modeling / AlignmentClustering.ccimport_pose / import_pose.hh
comparative_modeling / AlignmentClustering.ccpose / Pose.hh
comparative_modeling / AlignmentClustering.ccchemical / ResidueTypeSet.fwd.hh
comparative_modeling / AlignmentClustering.ccscoring / rms_util.hh
comparative_modeling / AlignmentClustering.ccsequence / SequenceAlignment.hh
comparative_modeling / AlignmentClustering.cctypes.hh
comparative_modeling / AlignmentClustering.ccsequence / util.hh
comparative_modeling / AlignmentClustering.ccchemical / util.hh
comparative_modeling / AlignmentClustering.hhkinematics / Jump.hh
comparative_modeling / AlignmentClustering.hhpose / Pose.fwd.hh
comparative_modeling / AlignmentClustering.hhconformation / Residue.hh
comparative_modeling / AlignmentClustering.hhsequence / SequenceAlignment.fwd.hh
comparative_modeling / AlignmentClustering.hhtypes.hh
comparative_modeling / AlignmentID.hhtypes.hh
comparative_modeling / AlignmentSet.ccsequence / Sequence.hh
comparative_modeling / AlignmentSet.ccsequence / SequenceAlignment.hh
comparative_modeling / AlignmentSet.hhsequence / Sequence.hh
comparative_modeling / AlignmentSet.hhsequence / SequenceAlignment.hh
toolbox / match_enzdes_util / AlignPoseToInvrotTreeMover.ccid / AtomID.hh
toolbox / match_enzdes_util / AlignPoseToInvrotTreeMover.ccid / AtomID_Map.hh
toolbox / match_enzdes_util / AlignPoseToInvrotTreeMover.cckinematics / FoldTree.hh
toolbox / match_enzdes_util / AlignPoseToInvrotTreeMover.ccpose / Pose.hh
toolbox / match_enzdes_util / AlignPoseToInvrotTreeMover.ccconformation / Residue.hh
toolbox / match_enzdes_util / AlignPoseToInvrotTreeMover.ccchemical / ResidueTypeSet.hh
toolbox / match_enzdes_util / AlignPoseToInvrotTreeMover.ccscoring / rms_util.hh
toolbox / match_enzdes_util / AlignPoseToInvrotTreeMover.ccutil / SwitchResidueTypeSet.hh
toolbox / match_enzdes_util / AlignPoseToInvrotTreeMover.cctypes.hh
toolbox / match_enzdes_util / AlignPoseToInvrotTreeMover.ccpose / util.hh
toolbox / match_enzdes_util / AlignPoseToInvrotTreeMover.hhpose / Pose.fwd.hh
toolbox / match_enzdes_util / AlignPoseToInvrotTreeMover.hhconformation / Residue.fwd.hh
toolbox / match_enzdes_util / AlignPoseToInvrotTreeMover.hhtypes.hh
comparative_modeling / AlignRmsdTargetEvaluatorCreator.ccimport_pose / import_pose.hh
comparative_modeling / AlignRmsdTargetEvaluatorCreator.ccpose / Pose.hh
comparative_modeling / AlignRmsdTargetEvaluatorCreator.ccsequence / SequenceAlignment.fwd.hh
comparative_modeling / AlignRmsdTargetEvaluatorCreator.ccsequence / SequenceAlignment.hh
comparative_modeling / AlignRmsdTargetEvaluatorCreator.ccio / silent / silent.fwd.hh
comparative_modeling / AlignRmsdTargetEvaluatorCreator.ccio / silent / SilentStruct.hh
comparative_modeling / AlignRmsdTargetEvaluatorCreator.ccsequence / util.hh
comparative_modeling / AlignRmsdTargetEvaluatorCreator.hhtypes.hh
toolbox / match_enzdes_util / AllowedSeqposForGeomCst.ccpose / Pose.hh
toolbox / match_enzdes_util / AllowedSeqposForGeomCst.ccconformation / Residue.hh
toolbox / match_enzdes_util / AllowedSeqposForGeomCst.cctypes.hh
toolbox / match_enzdes_util / AllowedSeqposForGeomCst.hhpose / Pose.fwd.hh
toolbox / match_enzdes_util / AllowedSeqposForGeomCst.hhtypes.hh
toolbox / AllowInsert.ccid / AtomID.hh
toolbox / AllowInsert.ccconformation / Conformation.hh
toolbox / AllowInsert.cckinematics / FoldTree.hh
toolbox / AllowInsert.ccid / NamedAtomID.hh
toolbox / AllowInsert.ccpose / Pose.hh
toolbox / AllowInsert.ccconformation / Residue.hh
toolbox / AllowInsert.ccchemical / ResidueType.hh
toolbox / AllowInsert.cctypes.hh
toolbox / AllowInsert.ccpose / util.hh
toolbox / AllowInsert.hhid / AtomID.fwd.hh
toolbox / AllowInsert.hhconformation / Conformation.fwd.hh
toolbox / AllowInsert.hhkinematics / FoldTree.fwd.hh
toolbox / AllowInsert.hhid / NamedAtomID.fwd.hh
toolbox / AllowInsert.hhpose / Pose.fwd.hh
toolbox / AllowInsert.hhid / TorsionID.fwd.hh
toolbox / AllowInsert.hhtypes.hh
hybridization / AllResiduesChanged.hhfragment / FragSet.fwd.hh
abinitio / AllResiduesChanged.hhfragment / FragSet.fwd.hh
abinitio / AllResiduesChanged.hhkinematics / MoveMap.hh
hybridization / AllResiduesChanged.hhpose / Pose.hh
abinitio / AllResiduesChanged.hhpose / Pose.hh
hybridization / AllResiduesChanged.hhconformation / Residue.hh
abinitio / AllResiduesChanged.hhconformation / Residue.hh
pmut_scan / AlterSpecDisruptionDriver.ccconformation / Conformation.hh
pmut_scan / AlterSpecDisruptionDriver.ccpose / Pose.hh
pmut_scan / AlterSpecDisruptionDriver.hhpose / Pose.fwd.hh
pmut_scan / AlterSpecDisruptionDriver.hhtypes.hh
frag_picker / scores / AmbigCSScore.hhtypes.hh
constraints_additional / AmbiguousMultiConstraint.ccscoring / constraints / Constraint.hh
constraints_additional / AmbiguousMultiConstraint.hhscoring / constraints / AmbiguousConstraint.hh
constraints_additional / AmbiguousMultiConstraint.hhid / AtomID.hh
constraints_additional / AmbiguousMultiConstraint.hhconformation / Conformation.fwd.hh
constraints_additional / AmbiguousMultiConstraint.hhscoring / EnergyMap.fwd.hh
constraints_additional / AmbiguousMultiConstraint.hhpose / Pose.fwd.hh
constraints_additional / AmbiguousMultiConstraint.hhscoring / ScoreType.hh
constraints_additional / AmbiguousMultiConstraint.hhid / SequenceMapping.fwd.hh
constraints_additional / AmbiguousMultiConstraint.hhscoring / constraints / XYZ_Func.fwd.hh
anchored_design / Anchor.ccpose / PDBInfo.hh
anchored_design / Anchor.ccpose / PDBPoseMap.hh
anchored_design / Anchor.ccpose / Pose.hh
anchored_design / Anchor.cctypes.hh
anchored_design / Anchor.hhpose / Pose.fwd.hh
anchored_design / Anchor.hhtypes.hh
grafting / AnchoredGraftMover.ccchemical / ChemicalManager.hh
grafting / AnchoredGraftMover.cckinematics / FoldTree.hh
grafting / AnchoredGraftMover.cckinematics / MoveMap.hh
grafting / AnchoredGraftMover.ccpack / task / PackerTask.hh
grafting / AnchoredGraftMover.ccpose / Pose.hh
grafting / AnchoredGraftMover.ccchemical / ResidueType.hh
grafting / AnchoredGraftMover.ccchemical / ResidueTypeSet.hh
grafting / AnchoredGraftMover.ccscoring / rms_util.hh
grafting / AnchoredGraftMover.ccscoring / ScoreFunction.hh
grafting / AnchoredGraftMover.ccscoring / ScoreFunctionFactory.hh
grafting / AnchoredGraftMover.ccpack / task / TaskFactory.hh
grafting / AnchoredGraftMover.ccpose / util.hh
grafting / AnchoredGraftMover.ccchemical / VariantType.hh
grafting / AnchoredGraftMover.hhkinematics / MoveMap.hh
grafting / AnchoredGraftMover.hhpose / Pose.hh
grafting / AnchoredGraftMover.hhscoring / ScoreFunction.hh
anchored_design / AnchorMovers.ccchemical / ChemicalManager.fwd.hh
anchored_design / AnchorMovers.ccconformation / Conformation.hh
anchored_design / AnchorMovers.ccscoring / constraints / ConstraintSet.hh
anchored_design / AnchorMovers.cckinematics / FoldTree.hh
anchored_design / AnchorMovers.ccfragment / FragSet.hh
anchored_design / AnchorMovers.ccimport_pose / import_pose.hh
anchored_design / AnchorMovers.cckinematics / MoveMap.hh
anchored_design / AnchorMovers.ccpack / task / PackerTask.hh
anchored_design / AnchorMovers.ccpose / Pose.hh
anchored_design / AnchorMovers.ccconformation / Residue.hh
anchored_design / AnchorMovers.ccconformation / ResidueFactory.hh
anchored_design / AnchorMovers.ccscoring / rms_util.hh
anchored_design / AnchorMovers.ccscoring / rms_util.tmpl.hh
anchored_design / AnchorMovers.ccscoring / ScoreFunction.hh
anchored_design / AnchorMovers.ccpack / task / TaskFactory.hh
anchored_design / AnchorMovers.ccpack / task / operation / TaskOperations.hh
anchored_design / AnchorMovers.cctypes.hh
anchored_design / AnchorMovers.ccpose / util.hh
anchored_design / AnchorMovers.ccscoring / constraints / util.hh
anchored_design / AnchorMovers.ccchemical / VariantType.hh
anchored_design / AnchorMovers.hhpose / Pose.fwd.hh
anchored_design / AnchorMoversData.ccid / AtomID.hh
anchored_design / AnchorMoversData.ccscoring / constraints / AtomPairConstraint.hh
anchored_design / AnchorMoversData.ccpose / metrics / CalculatorFactory.hh
anchored_design / AnchorMoversData.ccconformation / Conformation.hh
anchored_design / AnchorMoversData.ccfragment / ConstantLengthFragSet.hh
anchored_design / AnchorMoversData.ccscoring / constraints / ConstraintSet.hh
anchored_design / AnchorMoversData.ccfragment / picking_old / FragmentLibraryManager.hh
anchored_design / AnchorMoversData.ccfragment / FragSet.hh
anchored_design / AnchorMoversData.ccfragment / Frame.hh
anchored_design / AnchorMoversData.ccscoring / constraints / HarmonicFunc.hh
anchored_design / AnchorMoversData.ccpose / metrics / simple_calculators / InterfaceNeighborDefinitionCalculator.hh
anchored_design / AnchorMoversData.cckinematics / MoveMap.hh
anchored_design / AnchorMoversData.ccpack / task / PackerTask.hh
anchored_design / AnchorMoversData.ccpose / Pose.hh
anchored_design / AnchorMoversData.ccchemical / ResidueType.hh
anchored_design / AnchorMoversData.ccscoring / ScoreFunction.hh
anchored_design / AnchorMoversData.ccscoring / ScoreFunctionFactory.hh
anchored_design / AnchorMoversData.ccpack / task / TaskFactory.hh
anchored_design / AnchorMoversData.ccpack / task / operation / TaskOperations.hh
anchored_design / AnchorMoversData.ccid / TorsionID.hh
anchored_design / AnchorMoversData.cctypes.hh
anchored_design / AnchorMoversData.ccid / types.hh
anchored_design / AnchorMoversData.ccfragment / picking_old / vall / util.hh
anchored_design / AnchorMoversData.ccscoring / constraints / util.hh
anchored_design / AnchorMoversData.hhfragment / FragSet.fwd.hh
anchored_design / AnchorMoversData.hhkinematics / MoveMap.fwd.hh
anchored_design / AnchorMoversData.hhpack / task / PackerTask.hh
anchored_design / AnchorMoversData.hhpose / Pose.fwd.hh
anchored_design / AnchorMoversData.hhscoring / ScoreFunction.fwd.hh
anchored_design / AnchorMoversData.hhpack / task / TaskFactory.fwd.hh
anchored_design / AnchorMoversData.hhtypes.hh
sparta / ANN.cctypes.hh
antibody / AntibodyClass.ccchemical / AtomType.hh
antibody / AntibodyClass.cckinematics / FoldTree.hh
antibody / AntibodyClass.ccpose / PDBInfo.hh
antibody / AntibodyClass.ccpose / Pose.hh
antibody / AntibodyClass.ccscoring / rms_util.hh
antibody / AntibodyClass.cctypes.hh
antibody / AntibodyClass.ccpose / util.hh
antibody / AntibodyClass.ccpose / util.tmpl.hh
antibody / AntibodyClass.hhkinematics / MoveMap.hh
antibody / AntibodyClass.hhpose / Pose.hh
antibody / AntibodyClass.hhtypes.hh
antibody2 / AntibodyInfo.ccpose / PDBInfo.hh
antibody2 / AntibodyInfo.ccscoring / rms_util.hh
antibody2 / AntibodyInfo.ccscoring / ScoreFunctionFactory.hh
antibody2 / AntibodyInfo.ccscoring / ScoreType.hh
antibody2 / AntibodyInfo.ccpose / util.hh
antibody2 / AntibodyInfo.ccpose / util.tmpl.hh
antibody2 / AntibodyInfo.hhkinematics / FoldTree.hh
antibody2 / AntibodyInfo.hhkinematics / MoveMap.hh
antibody2 / AntibodyInfo.hhscoring / ScoreFunction.hh
antibody2 / AntibodyInfo.hhpack / task / TaskFactory.hh
antibody / AntibodyModeler.ccpose / datacache / CacheableDataType.hh
antibody / AntibodyModeler.cckinematics / FoldTree.hh
antibody / AntibodyModeler.ccfragment / FragData.hh
antibody / AntibodyModeler.ccfragment / FragSet.hh
antibody / AntibodyModeler.ccfragment / Frame.hh
antibody / AntibodyModeler.ccfragment / FrameList.hh
antibody / AntibodyModeler.ccimport_pose / import_pose.hh
antibody / AntibodyModeler.cckinematics / MoveMap.hh
antibody / AntibodyModeler.ccpack / task / operation / NoRepackDisulfides.hh
antibody / AntibodyModeler.ccpack / task / operation / OperateOnCertainResidues.hh
antibody / AntibodyModeler.ccpack / task / PackerTask.hh
antibody / AntibodyModeler.ccpose / PDBInfo.hh
antibody / AntibodyModeler.ccpose / Pose.hh
antibody / AntibodyModeler.ccpack / task / operation / ResFilters.hh
antibody / AntibodyModeler.ccchemical / ResidueSelector.hh
antibody / AntibodyModeler.ccpack / task / operation / ResLvlTaskOperations.hh
antibody / AntibodyModeler.ccscoring / rms_util.tmpl.hh
antibody / AntibodyModeler.ccpack / dunbrack / RotamerConstraint.hh
antibody / AntibodyModeler.ccscoring / ScoreFunction.hh
antibody / AntibodyModeler.ccscoring / ScoreFunctionFactory.hh
antibody / AntibodyModeler.ccscoring / ScoreType.hh
antibody / AntibodyModeler.ccpack / task / TaskFactory.hh
antibody / AntibodyModeler.ccpack / task / operation / TaskOperations.hh
antibody / AntibodyModeler.ccpack / rotamer_set / UnboundRotamersOperation.hh
antibody / AntibodyModeler.ccpose / util.hh
antibody / AntibodyModeler.ccchemical / VariantType.hh
antibody / AntibodyModeler.hhkinematics / FoldTree.fwd.hh
antibody / AntibodyModeler.hhfragment / FragData.fwd.hh
antibody / AntibodyModeler.hhfragment / FragSet.fwd.hh
antibody / AntibodyModeler.hhkinematics / MoveMap.fwd.hh
antibody / AntibodyModeler.hhpose / Pose.fwd.hh
antibody / AntibodyModeler.hhpose / Pose.hh
antibody / AntibodyModeler.hhscoring / ScoreFunction.fwd.hh
antibody / AntibodyModeler.hhpack / task / TaskFactory.fwd.hh
antibody / AntibodyModeler.hhtypes.hh
antibody2 / AntibodyModelerProtocol.ccpose / datacache / CacheableDataType.hh
antibody2 / AntibodyModelerProtocol.ccchemical / ChemicalManager.hh
antibody2 / AntibodyModelerProtocol.ccscoring / constraints / ConstraintFactory.hh
antibody2 / AntibodyModelerProtocol.ccscoring / constraints / ConstraintIO.hh
antibody2 / AntibodyModelerProtocol.ccscoring / Energies.hh
antibody2 / AntibodyModelerProtocol.ccimport_pose / import_pose.hh
antibody2 / AntibodyModelerProtocol.ccpack / task / PackerTask.hh
antibody2 / AntibodyModelerProtocol.ccpose / PDBInfo.hh
antibody2 / AntibodyModelerProtocol.ccio / pdb / pose_io.hh
antibody2 / AntibodyModelerProtocol.ccchemical / ResidueSelector.hh
antibody2 / AntibodyModelerProtocol.ccpack / dunbrack / RotamerConstraint.hh
antibody2 / AntibodyModelerProtocol.ccscoring / ScoreFunction.hh
antibody2 / AntibodyModelerProtocol.ccscoring / ScoreFunctionFactory.hh
antibody2 / AntibodyModelerProtocol.ccscoring / ScoreType.hh
antibody2 / AntibodyModelerProtocol.ccio / silent / SilentStruct.hh
antibody2 / AntibodyModelerProtocol.ccio / silent / SilentStructFactory.hh
antibody2 / AntibodyModelerProtocol.ccpack / task / TaskFactory.hh
antibody2 / AntibodyModelerProtocol.ccpack / task / operation / TaskOperations.hh
antibody2 / AntibodyModelerProtocol.ccpack / rotamer_set / UnboundRotamersOperation.hh
antibody2 / AntibodyModelerProtocol.ccpose / util.hh
antibody2 / AntibodyModelerProtocol.ccchemical / VariantType.hh
antibody2 / AntibodyModelerProtocol.hhpose / Pose.hh
antibody2 / AntibodyModelerProtocol.hhscoring / ScoreFunction.fwd.hh
antibody2 / AntibodyModelerProtocol.hhpack / task / TaskFactory.fwd.hh
antibody2 / AntibodyModelerProtocol.hhtypes.hh
antibody2 / AntibodyUtil.ccid / AtomID_Map.hh
antibody2 / AntibodyUtil.cckinematics / FoldTree.hh
antibody2 / AntibodyUtil.ccimport_pose / import_pose.hh
antibody2 / AntibodyUtil.ccpack / task / operation / NoRepackDisulfides.hh
antibody2 / AntibodyUtil.ccpack / task / operation / OperateOnCertainResidues.hh
antibody2 / AntibodyUtil.ccpack / task / operation / OptH.hh
antibody2 / AntibodyUtil.ccpack / task / PackerTask.hh
antibody2 / AntibodyUtil.ccpose / PDBInfo.hh
antibody2 / AntibodyUtil.ccpose / Pose.hh
antibody2 / AntibodyUtil.ccpack / task / operation / ResFilters.hh
antibody2 / AntibodyUtil.ccpack / task / operation / ResLvlTaskOperations.hh
antibody2 / AntibodyUtil.ccscoring / rms_util.hh
antibody2 / AntibodyUtil.ccscoring / rms_util.tmpl.hh
antibody2 / AntibodyUtil.ccpack / dunbrack / RotamerConstraint.hh
antibody2 / AntibodyUtil.ccpack / task / TaskFactory.hh
antibody2 / AntibodyUtil.ccpack / task / operation / TaskOperations.hh
antibody2 / AntibodyUtil.cctypes.hh
antibody2 / AntibodyUtil.ccpack / rotamer_set / UnboundRotamersOperation.hh
antibody2 / AntibodyUtil.ccpose / util.hh
antibody2 / AntibodyUtil.ccpose / util.tmpl.hh
antibody2 / AntibodyUtil.hhkinematics / MoveMap.hh
antibody2 / AntibodyUtil.hhpose / Pose.fwd.hh
antibody2 / AntibodyUtil.hhpose / Pose.hh
antibody2 / AntibodyUtil.hhpack / task / TaskFactory.fwd.hh
antibody2 / AntibodyUtil.hhtypes.hh
cluster / APCluster.hhtypes.hh
jd2 / archive / ArchiveBase.ccchemical / ChemicalManager.hh
jd2 / archive / ArchiveBase.cckinematics / Jump.hh
jd2 / archive / ArchiveBase.ccpose / Pose.hh
jd2 / archive / ArchiveBase.ccconformation / Residue.hh
jd2 / archive / ArchiveBase.ccscoring / ScoreFunction.hh
jd2 / archive / ArchiveBase.ccscoring / ScoreFunctionFactory.hh
jd2 / archive / ArchiveBase.ccio / silent / SilentFileData.hh
jd2 / archive / ArchiveBase.hhpose / Pose.fwd.hh
jd2 / archive / ArchiveBase.hhscoring / ScoreFunction.fwd.hh
jd2 / archive / ArchiveBase.hhio / silent / silent.fwd.hh
jd2 / archive / ArchiveBase.hhtypes.hh
jd2 / archive / ArchiveManager.ccio / silent / SilentFileData.hh
jd2 / archive / ArchiveManager.hhio / silent / silent.fwd.hh
jd2 / archive / ArchiveManager.hhtypes.hh
jd2 / archive / ArchiveMasterBase.cctypes.hh
jd2 / archive / ArchiveMasterBase.hhtypes.hh
domain_assembly / AssembleLinkerMover.ccchemical / ChemicalManager.fwd.hh
domain_assembly / AssembleLinkerMover.ccconformation / Conformation.hh
domain_assembly / AssembleLinkerMover.cckinematics / FoldTree.hh
domain_assembly / AssembleLinkerMover.ccfragment / FragSet.fwd.hh
domain_assembly / AssembleLinkerMover.ccfragment / FragSet.hh
domain_assembly / AssembleLinkerMover.ccpose / PDBInfo.hh
domain_assembly / AssembleLinkerMover.ccpose / Pose.hh
domain_assembly / AssembleLinkerMover.ccconformation / Residue.hh
domain_assembly / AssembleLinkerMover.ccutil / SwitchResidueTypeSet.hh
domain_assembly / AssembleLinkerMover.cctypes.hh
domain_assembly / AssembleLinkerMover.hhfragment / FragSet.hh
domain_assembly / AssembleLinkerMover.hhtypes.hh
noesy_assign / Assignment.ccchemical / AA.hh
noesy_assign / Assignment.hhid / NamedAtomID.fwd.hh
noesy_assign / Assignment.hhtypes.hh
topology_broker / AsymFoldandDockClaimer.ccconformation / Conformation.hh
topology_broker / AsymFoldandDockClaimer.ccpose / PDBInfo.hh
topology_broker / AsymFoldandDockClaimer.hhpose / Pose.hh
topology_broker / AsymFoldandDockClaimer.hhscoring / ScoreFunction.fwd.hh
topology_broker / AsymFoldandDockClaimer.hhtypes.hh
simple_moves / asym_fold_and_dock / AsymFoldandDockMoveRbJumpMover.ccconformation / Conformation.hh
simple_moves / asym_fold_and_dock / AsymFoldandDockMoveRbJumpMover.cckinematics / FoldTree.hh
simple_moves / asym_fold_and_dock / AsymFoldandDockMoveRbJumpMover.ccpose / Pose.hh
simple_moves / asym_fold_and_dock / AsymFoldandDockMoveRbJumpMover.ccconformation / Residue.hh
simple_moves / asym_fold_and_dock / AsymFoldandDockMoveRbJumpMover.hhpose / Pose.fwd.hh
simple_moves / asym_fold_and_dock / AsymFoldandDockRbTrialMover.cckinematics / MoveMap.hh
simple_moves / asym_fold_and_dock / AsymFoldandDockRbTrialMover.ccscoring / ScoreFunction.hh
simple_moves / asym_fold_and_dock / AsymFoldandDockRbTrialMover.ccscoring / ScoreFunctionFactory.hh
simple_moves / asym_fold_and_dock / AsymFoldandDockRbTrialMover.hhpose / Pose.fwd.hh
simple_moves / asym_fold_and_dock / AsymFoldandDockRbTrialMover.hhscoring / ScoreFunction.hh
features / AtomAtomPairFeatures.ccchemical / AA.hh
features / AtomAtomPairFeatures.ccchemical / AtomType.hh
features / AtomAtomPairFeatures.ccchemical / AtomTypeSet.hh
features / AtomAtomPairFeatures.ccchemical / ChemicalManager.hh
features / AtomAtomPairFeatures.ccconformation / Conformation.hh
features / AtomAtomPairFeatures.ccscoring / Energies.hh
features / AtomAtomPairFeatures.ccgraph / Graph.hh
features / AtomAtomPairFeatures.ccpose / Pose.hh
features / AtomAtomPairFeatures.ccconformation / Residue.hh
features / AtomAtomPairFeatures.ccchemical / ResidueType.fwd.hh
features / AtomAtomPairFeatures.ccscoring / TenANeighborGraph.hh
features / AtomAtomPairFeatures.cctypes.hh
features / AtomAtomPairFeatures.hhpose / Pose.fwd.hh
features / AtomAtomPairFeatures.hhtypes.hh
features / AtomAtomPairFeaturesCreator.hhtypes.hh
frag_picker / scores / AtomBasedConstraintsScore.ccid / NamedAtomID.hh
frag_picker / scores / AtomBasedConstraintsScore.ccpose / Pose.hh
frag_picker / scores / AtomBasedConstraintsScore.ccchemical / ResidueType.hh
ligand_docking / AtomCountFilter.ccconformation / Conformation.hh
ligand_docking / AtomCountFilter.ccpose / Pose.hh
ligand_docking / AtomCountFilter.cctypes.hh
ligand_docking / AtomCountFilter.ccpose / util.hh
ligand_docking / AtomCountFilter.hhtypes.hh
protein_interface_design / filters / AtomicContactCountFilter.ccchemical / AtomType.hh
protein_interface_design / filters / AtomicContactCountFilter.ccconformation / Conformation.hh
protein_interface_design / filters / AtomicContactCountFilter.cckinematics / FoldTree.hh
protein_interface_design / filters / AtomicContactCountFilter.ccpack / make_symmetric_task.hh
protein_interface_design / filters / AtomicContactCountFilter.ccpose / Pose.hh
protein_interface_design / filters / AtomicContactCountFilter.ccconformation / Residue.hh
protein_interface_design / filters / AtomicContactCountFilter.ccscoring / ScoreFunction.hh
protein_interface_design / filters / AtomicContactCountFilter.ccscoring / ScoreType.hh
protein_interface_design / filters / AtomicContactCountFilter.ccconformation / symmetry / SymmetryInfo.hh
protein_interface_design / filters / AtomicContactCountFilter.ccpack / task / TaskFactory.hh
protein_interface_design / filters / AtomicContactCountFilter.cctypes.hh
protein_interface_design / filters / AtomicContactCountFilter.ccpose / symmetry / util.hh
protein_interface_design / filters / AtomicContactCountFilter.hhpose / Pose.fwd.hh
protein_interface_design / filters / AtomicContactCountFilter.hhscoring / ScoreFunction.hh
protein_interface_design / filters / AtomicContactCountFilter.hhscoring / ScoreType.hh
protein_interface_design / filters / AtomicContactCountFilter.hhpack / task / TaskFactory.fwd.hh
protein_interface_design / filters / AtomicContactCountFilter.hhtypes.hh
simple_filters / AtomicContactFilter.ccpose / Pose.hh
simple_filters / AtomicContactFilter.ccconformation / Residue.hh
simple_filters / AtomicContactFilter.ccpose / selection.hh
simple_filters / AtomicContactFilter.cctypes.hh
simple_filters / AtomicContactFilter.hhpose / Pose.fwd.hh
simple_filters / AtomicContactFilter.hhtypes.hh
simple_filters / AtomicDistanceFilter.ccchemical / AtomType.hh
simple_filters / AtomicDistanceFilter.ccpose / Pose.hh
simple_filters / AtomicDistanceFilter.ccconformation / Residue.hh
simple_filters / AtomicDistanceFilter.ccpose / selection.hh
simple_filters / AtomicDistanceFilter.cctypes.hh
simple_filters / AtomicDistanceFilter.hhpose / Pose.fwd.hh
simple_filters / AtomicDistanceFilter.hhtypes.hh
features / AtomInResidueAtomInResiduePairFeatures.ccchemical / AA.hh
features / AtomInResidueAtomInResiduePairFeatures.ccconformation / Conformation.hh
features / AtomInResidueAtomInResiduePairFeatures.ccscoring / Energies.hh
features / AtomInResidueAtomInResiduePairFeatures.ccgraph / Graph.hh
features / AtomInResidueAtomInResiduePairFeatures.ccpose / Pose.hh
features / AtomInResidueAtomInResiduePairFeatures.ccconformation / Residue.hh
features / AtomInResidueAtomInResiduePairFeatures.ccchemical / ResidueType.fwd.hh
features / AtomInResidueAtomInResiduePairFeatures.ccscoring / TenANeighborGraph.hh
features / AtomInResidueAtomInResiduePairFeatures.cctypes.hh
features / AtomInResidueAtomInResiduePairFeatures.hhpose / Pose.fwd.hh
features / AtomInResidueAtomInResiduePairFeatures.hhtypes.hh
features / AtomInResidueAtomInResiduePairFeaturesCreator.hhtypes.hh
frag_picker / scores / AtomPairConstraintsScore.ccscoring / constraints / Func.hh
frag_picker / scores / AtomPairConstraintsScore.ccscoring / constraints / FuncFactory.hh
frag_picker / scores / AtomPairConstraintsScore.hhscoring / constraints / Func.fwd.hh
frag_picker / scores / AtomPairConstraintsScore.hhscoring / constraints / Func.hh
frag_picker / scores / AtomPairConstraintsScore.hhscoring / constraints / FuncFactory.hh
jd2 / AtomTreeDiffJobInputter.ccimport_pose / import_pose.hh
jd2 / AtomTreeDiffJobInputter.ccpose / Pose.hh
jd2 / AtomTreeDiffJobInputter.hhimport_pose / atom_tree_diffs / atom_tree_diff.hh
jd2 / AtomTreeDiffJobInputter.hhpose / Pose.fwd.hh
jd2 / AtomTreeDiffJobOutputter.ccimport_pose / atom_tree_diffs / atom_tree_diff.hh
jd2 / AtomTreeDiffJobOutputter.ccpose / Pose.hh
jd2 / AtomTreeDiffJobOutputter.ccsvn_version.hh
jd2 / AtomTreeDiffJobOutputter.hhimport_pose / atom_tree_diffs / atom_tree_diff.hh
jd2 / AtomTreeDiffJobOutputter.hhpose / Pose.hh
features / AtomTypesFeatures.ccchemical / AtomType.hh
features / AtomTypesFeatures.ccchemical / AtomTypeDatabaseIO.hh
features / AtomTypesFeatures.ccchemical / AtomTypeSet.hh
features / AtomTypesFeatures.ccpose / Pose.hh
features / AtomTypesFeatures.ccconformation / Residue.hh
features / AtomTypesFeatures.ccchemical / ResidueType.hh
features / AtomTypesFeatures.cctypes.hh
features / AtomTypesFeatures.hhchemical / AtomTypeDatabaseIO.hh
features / AtomTypesFeatures.hhtypes.hh
features / AtomTypesFeaturesCreator.hhtypes.hh
qsar / scoring_grid / AtrGrid.ccpose / Pose.hh
qsar / scoring_grid / AtrGrid.ccconformation / Residue.hh
rbsegment_relax / AutoRBRelaxMover.ccscoring / Energies.hh
rbsegment_relax / AutoRBRelaxMover.ccfragment / FragSet.hh
rbsegment_relax / AutoRBRelaxMover.cckinematics / Jump.hh
rbsegment_relax / AutoRBRelaxMover.cckinematics / MoveMap.hh
rbsegment_relax / AutoRBRelaxMover.ccpack / task / operation / NoRepackDisulfides.hh
rbsegment_relax / AutoRBRelaxMover.ccpose / Pose.hh
rbsegment_relax / AutoRBRelaxMover.ccconformation / Residue.hh
rbsegment_relax / AutoRBRelaxMover.ccscoring / ScoreFunction.hh
rbsegment_relax / AutoRBRelaxMover.ccscoring / ScoreFunctionFactory.hh
rbsegment_relax / AutoRBRelaxMover.ccpack / task / TaskFactory.hh
rbsegment_relax / AutoRBRelaxMover.ccpack / task / operation / TaskOperations.hh
rbsegment_relax / AutoRBRelaxMover.cctypes.hh
rbsegment_relax / AutoRBRelaxMover.ccscoring / constraints / util.hh
rbsegment_relax / AutoRBRelaxMover.ccscoring / electron_density / util.hh
rbsegment_relax / AutoRBRelaxMover.ccpose / util.hh
rbsegment_relax / AutoRBRelaxMover.hhfragment / FragSet.fwd.hh
rbsegment_relax / AutoRBRelaxMover.hhpose / Pose.fwd.hh
rbsegment_relax / AutoRBRelaxMover.hhscoring / ScoreFunction.fwd.hh
rbsegment_relax / AutoRBRelaxMover.hhpack / task / TaskFactory.fwd.hh
protein_interface_design / filters / AverageDegreeFilter.ccconformation / Conformation.hh
protein_interface_design / filters / AverageDegreeFilter.ccpack / task / PackerTask.hh
protein_interface_design / filters / AverageDegreeFilter.ccpose / Pose.hh
protein_interface_design / filters / AverageDegreeFilter.ccconformation / Residue.hh
protein_interface_design / filters / AverageDegreeFilter.ccpack / task / TaskFactory.hh
protein_interface_design / filters / AverageDegreeFilter.hhpose / Pose.fwd.hh
protein_interface_design / filters / AverageDegreeFilter.hhpack / task / TaskFactory.fwd.hh
loophash / BackboneDB.cckinematics / FoldTree.hh
loophash / BackboneDB.cckinematics / Jump.hh
loophash / BackboneDB.ccpose / Pose.hh
loophash / BackboneDB.cckinematics / RT.hh
loophash / BackboneDB.ccpose / util.hh
loophash / BackboneDB.hhpose / Pose.fwd.hh
loophash / BackboneDB.hhtypes.hh
simple_moves / BackboneMover.ccconformation / Conformation.hh
simple_moves / BackboneMover.ccid / DOF_ID_Range.hh
simple_moves / BackboneMover.cckinematics / MoveMap.hh
simple_moves / BackboneMover.ccpose / Pose.hh
simple_moves / BackboneMover.ccscoring / Ramachandran.hh
simple_moves / BackboneMover.ccconformation / Residue.hh
simple_moves / BackboneMover.ccscoring / ScoringManager.hh
simple_moves / BackboneMover.ccid / TorsionID_Range.hh
simple_moves / BackboneMover.ccpose / symmetry / util.hh
simple_moves / BackboneMover.hhid / DOF_ID_Range.fwd.hh
simple_moves / BackboneMover.hhkinematics / MoveMap.fwd.hh
simple_moves / BackboneMover.hhpose / Pose.fwd.hh
simple_moves / BackboneMover.hhtypes.hh
enzdes / BackboneSampler.cckinematics / FoldTree.hh
enzdes / BackboneSampler.cckinematics / Jump.hh
enzdes / BackboneSampler.cckinematics / MoveMap.hh
enzdes / BackboneSampler.ccpose / Pose.hh
enzdes / BackboneSampler.ccconformation / Residue.hh
enzdes / BackboneSampler.ccscoring / ScoreFunction.hh
enzdes / BackboneSampler.cctypes.hh
enzdes / BackboneSampler.ccpack / rotamer_set / UnboundRotamersOperation.hh
enzdes / BackboneSampler.hhpose / Pose.fwd.hh
enzdes / BackboneSampler.hhtypes.hh
protein_interface_design / movers / BackrubDDMover.ccconformation / Conformation.hh
protein_interface_design / movers / BackrubDDMover.cckinematics / Edge.hh
protein_interface_design / movers / BackrubDDMover.ccscoring / methods / EnergyMethodOptions.hh
protein_interface_design / movers / BackrubDDMover.cckinematics / FoldTree.hh
protein_interface_design / movers / BackrubDDMover.cckinematics / MoveMap.hh
protein_interface_design / movers / BackrubDDMover.ccpack / task / operation / NoRepackDisulfides.hh
protein_interface_design / movers / BackrubDDMover.ccpack / task / operation / OperateOnCertainResidues.hh
protein_interface_design / movers / BackrubDDMover.ccpack / task / PackerTask.hh
protein_interface_design / movers / BackrubDDMover.ccpose / Pose.hh
protein_interface_design / movers / BackrubDDMover.ccpack / task / operation / ResLvlTaskOperations.hh
protein_interface_design / movers / BackrubDDMover.ccscoring / ScoreFunction.hh
protein_interface_design / movers / BackrubDDMover.ccpose / selection.hh
protein_interface_design / movers / BackrubDDMover.ccpack / task / TaskFactory.hh
protein_interface_design / movers / BackrubDDMover.ccpack / task / operation / TaskOperations.hh
protein_interface_design / movers / BackrubDDMover.cctypes.hh
protein_interface_design / movers / BackrubDDMover.hhpose / Pose.fwd.hh
protein_interface_design / movers / BackrubDDMover.hhtypes.hh
backrub / BackrubMover.cckinematics / tree / Atom.hh
backrub / BackrubMover.cckinematics / AtomTree.hh
backrub / BackrubMover.ccid / DOF_ID_Range.hh
backrub / BackrubMover.ccscoring / methods / EnergyMethodOptions.hh
backrub / BackrubMover.cckinematics / FoldTree.hh
backrub / BackrubMover.ccscoring / mm / MMBondAngleResidueTypeParamSet.hh
backrub / BackrubMover.ccpose / Pose.hh
backrub / BackrubMover.ccconformation / Residue.hh
backrub / BackrubMover.ccchemical / ResidueType.hh
backrub / BackrubMover.ccscoring / ScoreFunction.hh
backrub / BackrubMover.ccscoring / ScoreType.hh
backrub / BackrubMover.ccpose / selection.hh
backrub / BackrubMover.ccid / TorsionID_Range.hh
backrub / BackrubMover.cctypes.hh
backrub / BackrubMover.hhkinematics / tree / Atom.fwd.hh
backrub / BackrubMover.hhid / DOF_ID_Range.fwd.hh
backrub / BackrubMover.hhpose / Pose.fwd.hh
backrub / BackrubSegment.cckinematics / tree / Atom.hh
backrub / BackrubSegment.ccid / AtomID.hh
backrub / BackrubSegment.cckinematics / AtomTree.hh
backrub / BackrubSegment.ccpose / Pose.hh
backrub / BackrubSegment.cctypes.hh
backrub / BackrubSegment.hhkinematics / tree / Atom.fwd.hh
backrub / BackrubSegment.hhid / AtomID.hh
backrub / BackrubSegment.hhpose / Pose.fwd.hh
backrub / BackrubSegment.hhtypes.hh
backrub / BackrubSidechainMover.cckinematics / FoldTree.hh
backrub / BackrubSidechainMover.ccpose / PDBInfo.hh
backrub / BackrubSidechainMover.ccpose / Pose.hh
backrub / BackrubSidechainMover.ccconformation / Residue.hh
backrub / BackrubSidechainMover.ccpose / selection.hh
backrub / BackrubSidechainMover.ccpack / task / TaskFactory.hh
backrub / BackrubSidechainMover.ccpack / task / operation / TaskOperations.hh
backrub / BackrubSidechainMover.ccid / TorsionID_Range.hh
backrub / BackrubSidechainMover.cctypes.hh
backrub / BackrubSidechainMover.hhpose / Pose.fwd.hh
backrub / BackrubSidechainMover.hhpack / task / TaskFactory.fwd.hh
backrub / BackrubSidechainMover.hhtypes.hh
filters / BasicFilters.ccpose / Pose.hh
filters / BasicFilters.cctypes.hh
filters / BasicFilters.hhpose / Pose.fwd.hh
filters / BasicFilters.hhtypes.hh
features / BatchFeatures.ccsvn_version.hh
features / BatchFeatures.cctypes.hh
features / BatchFeatures.hhtypes.hh
features / BatchFeaturesCreator.hhtypes.hh
jd2 / BatchJobInputter.hhpose / Pose.fwd.hh
simple_filters / BatchNrEvaluator.ccio / silent / SilentStruct.hh
simple_filters / BatchNrEvaluator.hhpose / Pose.fwd.hh
simple_filters / BatchNrEvaluator.hhio / silent / silent.fwd.hh
fldsgn / topology / BB_Pos.ccpose / Pose.hh
fldsgn / topology / BB_Pos.ccconformation / Residue.hh
fldsgn / topology / BB_Pos.hhpose / Pose.fwd.hh
fldsgn / topology / BB_Pos.hhchemical / ResidueType.fwd.hh
fldsgn / topology / BB_Pos.hhtypes.hh
simple_moves / BBConRotMover.ccchemical / AtomType.hh
simple_moves / BBConRotMover.ccconformation / Conformation.hh
simple_moves / BBConRotMover.ccpose / Pose.hh
simple_moves / BBConRotMover.ccconformation / Residue.hh
simple_moves / BBConRotMover.ccchemical / ResidueType.hh
simple_moves / BBConRotMover.cckinematics / Stub.hh
simple_moves / BBConRotMover.hhkinematics / MoveMap.fwd.hh
simple_moves / BBConRotMover.hhpose / Pose.fwd.hh
simple_moves / BBConRotMover.hhconformation / Residue.fwd.hh
simple_moves / BBConRotMover.hhtypes.hh
simple_moves / BBGaussianMover.ccchemical / AtomType.hh
simple_moves / BBGaussianMover.cckinematics / MoveMap.hh
simple_moves / BBGaussianMover.ccpose / Pose.hh
simple_moves / BBGaussianMover.ccconformation / Residue.hh
simple_moves / BBGaussianMover.hhkinematics / MoveMap.fwd.hh
simple_moves / BBGaussianMover.hhpose / Pose.fwd.hh
simple_moves / BBGaussianMover.hhconformation / Residue.fwd.hh
simple_moves / BBGaussianMover.hhtypes.hh
forge / components / BDR.ccchemical / AA.hh
forge / components / BDR.ccpose / annotated_sequence.hh
forge / components / BDR.ccpose / metrics / CalculatorFactory.hh
forge / components / BDR.ccscoring / dssp / Dssp.hh
forge / components / BDR.ccscoring / Energies.hh
forge / components / BDR.cckinematics / FoldTree.hh
forge / components / BDR.ccpack / task / operation / NoRepackDisulfides.hh
forge / components / BDR.ccpack / task / PackerTask.hh
forge / components / BDR.ccpose / Pose.hh
forge / components / BDR.ccchemical / ResidueTypeSet.hh
forge / components / BDR.ccscoring / ScoreFunction.hh
forge / components / BDR.ccscoring / ScoreFunctionFactory.hh
forge / components / BDR.ccutil / SwitchResidueTypeSet.hh
forge / components / BDR.ccpack / task / TaskFactory.hh
forge / components / BDR.ccpack / task / operation / TaskOperations.hh
forge / components / BDR.hhpose / Pose.fwd.hh
forge / components / BDR.hhscoring / ScoreFunction.fwd.hh
forge / components / BDR.hhpack / task / TaskFactory.fwd.hh
forge / components / BDR.hhtypes.hh
forge / components / BDRSegmentInfo.hhpose / annotated_sequence.hh
forge / components / BDRSegmentInfo.hhtypes.hh
protein_interface_design / movers / BestHotspotCstMover.ccid / AtomID.hh
protein_interface_design / movers / BestHotspotCstMover.ccpack / task / PackerTask.hh
protein_interface_design / movers / BestHotspotCstMover.ccpose / PDBInfo.hh
protein_interface_design / movers / BestHotspotCstMover.ccpose / PDBPoseMap.hh
protein_interface_design / movers / BestHotspotCstMover.ccpose / Pose.hh
protein_interface_design / movers / BestHotspotCstMover.ccconformation / Residue.hh
protein_interface_design / movers / BestHotspotCstMover.ccscoring / ScoreFunction.hh
protein_interface_design / movers / BestHotspotCstMover.ccscoring / ScoreFunctionFactory.hh
protein_interface_design / movers / BestHotspotCstMover.ccpack / task / TaskFactory.hh
protein_interface_design / movers / BestHotspotCstMover.hhpose / Pose.fwd.hh
protein_interface_design / movers / BestHotspotCstMover.hhtypes.hh
frag_picker / BestTotalScoreSelector.cctypes.hh
frag_picker / BestTotalScoreSelector.hhtypes.hh
fldsgn / topology / BetaAlphaBetaMotif.cctypes.hh
fldsgn / topology / BetaAlphaBetaMotif.hhtypes.hh
features / BetaTurnDetectionFeatures.ccconformation / Conformation.hh
features / BetaTurnDetectionFeatures.ccpose / Pose.hh
features / BetaTurnDetectionFeatures.ccconformation / Residue.hh
features / BetaTurnDetectionFeatures.cctypes.hh
features / BetaTurnDetectionFeatures.ccconformation / util.hh
features / BetaTurnDetectionFeatures.ccpose / util.hh
features / BetaTurnDetectionFeatures.hhtypes.hh
features / BetaTurnDetectionFeaturesCreator.hhtypes.hh
frag_picker / scores / BFactor.cctypes.hh
frag_picker / scores / BFactor.hhtypes.hh
nonlocal / BiasedFragmentMover.cckinematics / FoldTree.hh
nonlocal / BiasedFragmentMover.ccfragment / FragSet.hh
nonlocal / BiasedFragmentMover.ccfragment / Frame.hh
nonlocal / BiasedFragmentMover.ccfragment / FrameIterator.hh
nonlocal / BiasedFragmentMover.ccfragment / FrameIteratorWorker_.hh
nonlocal / BiasedFragmentMover.cckinematics / MoveMap.hh
nonlocal / BiasedFragmentMover.ccpose / Pose.hh
nonlocal / BiasedFragmentMover.hhkinematics / FoldTree.fwd.hh
nonlocal / BiasedFragmentMover.hhfragment / FragData.hh
nonlocal / BiasedFragmentMover.hhfragment / FragSet.hh
nonlocal / BiasedFragmentMover.hhfragment / Frame.hh
nonlocal / BiasedFragmentMover.hhkinematics / MoveMap.hh
nonlocal / BiasedFragmentMover.hhpose / Pose.fwd.hh
constraints_additional / BindingSiteConstraint.ccid / AtomID.hh
constraints_additional / BindingSiteConstraint.ccchemical / ChemicalManager.fwd.hh
constraints_additional / BindingSiteConstraint.ccscoring / constraints / Constraint.hh
constraints_additional / BindingSiteConstraint.ccscoring / EnergyMap.hh
constraints_additional / BindingSiteConstraint.ccscoring / constraints / Func.hh
constraints_additional / BindingSiteConstraint.cckinematics / Jump.hh
constraints_additional / BindingSiteConstraint.ccpose / Pose.hh
constraints_additional / BindingSiteConstraint.ccconformation / Residue.hh
constraints_additional / BindingSiteConstraint.ccchemical / ResidueType.hh
constraints_additional / BindingSiteConstraint.ccchemical / ResidueTypeSet.hh
constraints_additional / BindingSiteConstraint.ccscoring / ScoreType.hh
constraints_additional / BindingSiteConstraint.ccid / SequenceMapping.hh
constraints_additional / BindingSiteConstraint.ccutil / SwitchResidueTypeSet.hh
constraints_additional / BindingSiteConstraint.ccscoring / constraints / XYZ_Func.hh
constraints_additional / BindingSiteConstraint.hhid / AtomID.hh
constraints_additional / BindingSiteConstraint.hhscoring / constraints / Constraint.hh
constraints_additional / BindingSiteConstraint.hhscoring / EnergyMap.fwd.hh
constraints_additional / BindingSiteConstraint.hhscoring / constraints / Func.hh
constraints_additional / BindingSiteConstraint.hhscoring / constraints / FuncFactory.fwd.hh
constraints_additional / BindingSiteConstraint.hhpose / Pose.fwd.hh
constraints_additional / BindingSiteConstraint.hhscoring / ScoreFunction.fwd.hh
constraints_additional / BindingSiteConstraint.hhscoring / ScoreType.hh
constraints_additional / BindingSiteConstraint.hhscoring / constraints / XYZ_Func.fwd.hh
protein_interface_design / filters / BindingStrainFilter.ccpack / pack_rotamers.hh
protein_interface_design / filters / BindingStrainFilter.ccpack / task / PackerTask.hh
protein_interface_design / filters / BindingStrainFilter.ccpose / Pose.hh
protein_interface_design / filters / BindingStrainFilter.ccscoring / ScoreFunction.hh
protein_interface_design / filters / BindingStrainFilter.ccscoring / ScoreType.hh
protein_interface_design / filters / BindingStrainFilter.ccpack / task / TaskFactory.hh
protein_interface_design / filters / BindingStrainFilter.ccpose / symmetry / util.hh
protein_interface_design / filters / BindingStrainFilter.hhpose / Pose.fwd.hh
protein_interface_design / filters / BindingStrainFilter.hhscoring / ScoreFunction.fwd.hh
protein_interface_design / filters / BindingStrainFilter.hhpack / task / TaskFactory.fwd.hh
jd2 / parser / BluePrint.ccutil / ABEGOManager.hh
jd2 / parser / BluePrint.cckinematics / MoveMap.hh
jd2 / parser / BluePrint.ccpose / Pose.hh
jd2 / parser / BluePrint.cctypes.hh
jd2 / parser / BluePrint.hhkinematics / MoveMap.fwd.hh
jd2 / parser / BluePrint.hhpose / Pose.fwd.hh
jd2 / parser / BluePrint.hhtypes.hh
fldsgn / BluePrintBDR.ccchemical / AA.hh
fldsgn / BluePrintBDR.ccscoring / constraints / Constraint.hh
fldsgn / BluePrintBDR.ccscoring / constraints / ConstraintSet.hh
fldsgn / BluePrintBDR.ccscoring / dssp / Dssp.hh
fldsgn / BluePrintBDR.ccscoring / Energies.hh
fldsgn / BluePrintBDR.cckinematics / FoldTree.hh
fldsgn / BluePrintBDR.ccimport_pose / import_pose.hh
fldsgn / BluePrintBDR.ccpose / PDBInfo.hh
fldsgn / BluePrintBDR.ccpose / Pose.hh
fldsgn / BluePrintBDR.ccchemical / ResidueTypeSet.hh
fldsgn / BluePrintBDR.ccscoring / ScoreFunction.hh
fldsgn / BluePrintBDR.ccscoring / ScoreFunctionFactory.hh
fldsgn / BluePrintBDR.ccutil / SwitchResidueTypeSet.hh
fldsgn / BluePrintBDR.ccpose / symmetry / util.hh
fldsgn / BluePrintBDR.hhscoring / dssp / Dssp.fwd.hh
fldsgn / BluePrintBDR.hhpose / Pose.fwd.hh
fldsgn / BluePrintBDR.hhscoring / ScoreFunction.fwd.hh
fldsgn / BluePrintBDR.hhtypes.hh
boinc / boinc_shmem.hhtypes.hh
jd2 / BOINCJobDistributor.ccio / silent / util.hh
jd2 / BOINCJobDistributor.hhtypes.hh
boinc / BoincPoseObserver.hhpose / signals / ConformationEvent.fwd.hh
boinc / BoincPoseObserver.hhpose / Pose.fwd.hh
protein_interface_design / filters / BoltzmannFilter.hhpose / Pose.fwd.hh
moves / BoolMover.ccpose / Pose.hh
moves / BoolMover.hhpose / Pose.fwd.hh
frag_picker / BoundedCollector.hhtypes.hh
frag_picker / BoundedPriorityQueue.hhtypes.hh
branch_angle / BranchAngleOptimizer.cckinematics / tree / Atom.hh
branch_angle / BranchAngleOptimizer.ccid / AtomID.hh
branch_angle / BranchAngleOptimizer.cckinematics / AtomTree.hh
branch_angle / BranchAngleOptimizer.ccconformation / Conformation.hh
branch_angle / BranchAngleOptimizer.ccscoring / mm / MMBondAngleLibrary.hh
branch_angle / BranchAngleOptimizer.ccscoring / mm / MMBondAngleResidueTypeParam.hh
branch_angle / BranchAngleOptimizer.ccscoring / mm / MMBondAngleResidueTypeParamSet.hh
branch_angle / BranchAngleOptimizer.ccpose / Pose.hh
branch_angle / BranchAngleOptimizer.ccconformation / Residue.hh
branch_angle / BranchAngleOptimizer.ccchemical / ResidueConnection.hh
branch_angle / BranchAngleOptimizer.ccchemical / ResidueType.hh
branch_angle / BranchAngleOptimizer.ccscoring / ScoringManager.hh
branch_angle / BranchAngleOptimizer.hhkinematics / tree / Atom.fwd.hh
branch_angle / BranchAngleOptimizer.hhid / AtomID.fwd.hh
branch_angle / BranchAngleOptimizer.hhscoring / mm / MMBondAngleLibrary.fwd.hh
branch_angle / BranchAngleOptimizer.hhscoring / mm / MMBondAngleResidueTypeParamSet.fwd.hh
branch_angle / BranchAngleOptimizer.hhpose / Pose.fwd.hh
branch_angle / BranchAngleOptimizer.hhtypes.hh
branch_angle / BranchCoef1.hhtypes.hh
branch_angle / BranchCoef2.hhtypes.hh
branch_angle / BranchParam1.hhtypes.hh
branch_angle / BranchParam2.hhtypes.hh
forge / build / Bridge.ccpose / annotated_sequence.hh
forge / build / Bridge.ccconformation / signals / LengthEvent.hh
forge / build / Bridge.cckinematics / MoveMap.hh
forge / build / Bridge.ccpose / Pose.hh
forge / build / Bridge.ccconformation / util.hh
abinitio / BrokerMain.ccscoring / constraints / BoundConstraint.hh
abinitio / BrokerMain.ccscoring / constraints / ConstraintIO.hh
abinitio / BrokerMain.ccscoring / constraints / FuncFactory.hh
protein_interface_design / movers / BuildAlaPose.cckinematics / Jump.hh
protein_interface_design / movers / BuildAlaPose.ccpack / pack_rotamers.hh
protein_interface_design / movers / BuildAlaPose.ccpack / task / PackerTask.hh
protein_interface_design / movers / BuildAlaPose.ccconformation / Residue.hh
protein_interface_design / movers / BuildAlaPose.ccscoring / ScoreFunction.hh
protein_interface_design / movers / BuildAlaPose.ccscoring / ScoreFunctionFactory.hh
protein_interface_design / movers / BuildAlaPose.ccpack / task / TaskFactory.hh
protein_interface_design / movers / BuildAlaPose.ccid / types.hh
protein_interface_design / movers / BuildAlaPose.hhpose / Pose.fwd.hh
protein_interface_design / movers / BuildAlaPose.hhtypes.hh
forge / build / BuildInstruction.ccconformation / Conformation.hh
forge / build / BuildInstruction.ccscoring / Energies.hh
forge / build / BuildInstruction.ccconformation / signals / LengthEvent.hh
forge / build / BuildInstruction.ccpose / Pose.hh
forge / build / BuildInstruction.ccchemical / ResidueTypeSet.hh
forge / build / BuildInstruction.hhchemical / ChemicalManager.hh
forge / build / BuildInstruction.hhconformation / signals / LengthEvent.fwd.hh
forge / build / BuildInstruction.hhkinematics / MoveMap.fwd.hh
forge / build / BuildInstruction.hhpose / Pose.fwd.hh
forge / build / BuildInstruction.hhchemical / ResidueTypeSet.fwd.hh
forge / build / BuildInstruction.hhtypes.hh
forge / build / BuildManager.ccpose / annotated_sequence.hh
forge / build / BuildManager.cckinematics / FoldTree.hh
forge / build / BuildManager.cckinematics / MoveMap.hh
forge / build / BuildManager.ccpose / Pose.hh
forge / build / BuildManager.ccconformation / ResidueFactory.hh
forge / build / BuildManager.ccchemical / ResidueType.hh
forge / build / BuildManager.ccchemical / ResidueTypeSet.hh
forge / build / BuildManager.ccid / SequenceMapping.hh
forge / build / BuildManager.ccpose / util.hh
forge / build / BuildManager.ccconformation / util.hh
forge / build / BuildManager.ccchemical / VariantType.hh
forge / build / BuildManager.hhkinematics / MoveMap.fwd.hh
forge / build / BuildManager.hhpose / Pose.fwd.hh
forge / build / BuildManager.hhid / SequenceMapping.fwd.hh
forge / build / BuildManager.hhtypes.hh
motifs / BuildPosition.ccconformation / Residue.hh
motifs / BuildPosition.hhconformation / Residue.fwd.hh
motifs / BuildPosition.hhpack / rotamer_set / RotamerSet.fwd.hh
motifs / BuildPosition.hhtypes.hh
match / BumpGrid.ccchemical / AtomType.hh
match / BumpGrid.ccchemical / AtomTypeSet.hh
match / BumpGrid.ccchemical / ChemicalManager.hh
match / BumpGrid.ccpose / Pose.hh
match / BumpGrid.ccconformation / Residue.hh
match / BumpGrid.hhpose / Pose.fwd.hh
match / BumpGrid.hhconformation / Residue.fwd.hh
match / BumpGrid.hhtypes.hh
simple_filters / BuriedUnsatHbondFilter.ccpose / Pose.hh
simple_filters / BuriedUnsatHbondFilter.ccscoring / ScoreFunction.hh
simple_filters / BuriedUnsatHbondFilter.ccscoring / ScoreFunctionFactory.hh
simple_filters / BuriedUnsatHbondFilter.ccpack / task / TaskFactory.hh
simple_filters / BuriedUnsatHbondFilter.hhpose / Pose.fwd.hh
simple_filters / BuriedUnsatHbondFilter.hhscoring / ScoreFunction.fwd.hh
simple_filters / BuriedUnsatHbondFilter.hhpack / task / TaskFactory.fwd.hh
toolbox / pose_metric_calculators / BuriedUnsatisfiedPolarsCalculator.ccchemical / AtomType.hh
toolbox / pose_metric_calculators / BuriedUnsatisfiedPolarsCalculator.ccpose / metrics / CalculatorFactory.hh
toolbox / pose_metric_calculators / BuriedUnsatisfiedPolarsCalculator.ccpose / Pose.hh
toolbox / pose_metric_calculators / BuriedUnsatisfiedPolarsCalculator.ccconformation / Residue.hh
toolbox / pose_metric_calculators / BuriedUnsatisfiedPolarsCalculator.ccpose / metrics / simple_calculators / SasaCalculator.hh
toolbox / pose_metric_calculators / BuriedUnsatisfiedPolarsCalculator.hhid / AtomID_Map.hh
toolbox / pose_metric_calculators / BuriedUnsatisfiedPolarsCalculator.hhpose / Pose.fwd.hh
toolbox / pose_metric_calculators / BuriedUnsatisfiedPolarsCalculator.hhpose / metrics / PoseMetricCalculatorBase.hh
toolbox / pose_metric_calculators / BuriedUnsatisfiedPolarsCalculator.hhtypes.hh
frag_picker / scores / CachingScoringMethod.hhtypes.hh
seeded_abinitio / CAcstGenerator.ccscoring / constraints / AtomPairConstraint.hh
seeded_abinitio / CAcstGenerator.ccchemical / AtomType.hh
seeded_abinitio / CAcstGenerator.ccconformation / Conformation.hh
seeded_abinitio / CAcstGenerator.cckinematics / FoldTree.hh
seeded_abinitio / CAcstGenerator.ccimport_pose / import_pose.hh
seeded_abinitio / CAcstGenerator.ccpose / Pose.hh
seeded_abinitio / CAcstGenerator.ccpose / selection.hh
seeded_abinitio / CAcstGenerator.cctypes.hh
seeded_abinitio / CAcstGenerator.hhscoring / constraints / ConstraintSet.hh
seeded_abinitio / CAcstGenerator.hhkinematics / FoldTree.fwd.hh
seeded_abinitio / CAcstGenerator.hhpose / Pose.hh
seeded_abinitio / CAcstGenerator.hhconformation / Residue.fwd.hh
seeded_abinitio / CAcstGenerator.hhtypes.hh
filters / CalculatorFilter.ccpose / Pose.hh
filters / CalculatorFilter.cctypes.hh
filters / CalculatorFilter.hhpose / Pose.fwd.hh
simple_filters / CamShiftEvaluator.ccpose / Pose.hh
simple_filters / CamShiftEvaluator.ccio / silent / SilentStruct.hh
simple_filters / CamShiftEvaluator.hhpose / Pose.fwd.hh
simple_filters / CamShiftEvaluatorCreator.ccio / silent / silent.fwd.hh
simple_filters / CamShiftEvaluatorCreator.ccio / silent / SilentStruct.hh
simple_filters / CamShiftEvaluatorCreator.hhtypes.hh
canonical_sampling / CanonicalSamplingApplication.ccscoring / methods / EnergyMethodOptions.hh
canonical_sampling / CanonicalSamplingApplication.ccscoring / mm / MMBondAngleResidueTypeParamSet.hh
canonical_sampling / CanonicalSamplingApplication.cckinematics / MoveMap.hh
canonical_sampling / CanonicalSamplingApplication.ccchemical / ResidueType.hh
canonical_sampling / CanonicalSamplingApplication.ccscoring / ScoreFunctionFactory.hh
canonical_sampling / CanonicalSamplingApplication.ccpack / task / TaskFactory.hh
canonical_sampling / CanonicalSamplingApplication.ccpack / task / operation / TaskOperations.hh
moves / CanonicalSamplingMover.ccscoring / constraints / AtomPairConstraint.hh
canonical_sampling / CanonicalSamplingMover.ccscoring / constraints / AtomPairConstraint.hh
moves / CanonicalSamplingMover.ccscoring / methods / EnergyMethodOptions.hh
moves / CanonicalSamplingMover.ccscoring / constraints / HarmonicFunc.hh
canonical_sampling / CanonicalSamplingMover.ccscoring / constraints / HarmonicFunc.hh
moves / CanonicalSamplingMover.ccscoring / mm / MMBondAngleResidueTypeParamSet.hh
canonical_sampling / CanonicalSamplingMover.ccpack / task / PackerTask.fwd.hh
moves / CanonicalSamplingMover.ccpose / PDBInfo.hh
canonical_sampling / CanonicalSamplingMover.ccpose / PDBInfo.hh
moves / CanonicalSamplingMover.ccpose / Pose.hh
canonical_sampling / CanonicalSamplingMover.ccpose / Pose.hh
moves / CanonicalSamplingMover.ccconformation / Residue.hh
canonical_sampling / CanonicalSamplingMover.ccconformation / Residue.hh
moves / CanonicalSamplingMover.ccscoring / methods / RG_Energy_Fast.hh
canonical_sampling / CanonicalSamplingMover.ccscoring / methods / RG_Energy_Fast.hh
moves / CanonicalSamplingMover.ccscoring / rms_util.hh
canonical_sampling / CanonicalSamplingMover.ccscoring / rms_util.hh
moves / CanonicalSamplingMover.ccscoring / ScoreFunction.hh
canonical_sampling / CanonicalSamplingMover.ccscoring / ScoreFunction.hh
moves / CanonicalSamplingMover.ccio / silent / SilentFileData.hh
canonical_sampling / CanonicalSamplingMover.ccio / silent / SilentFileData.hh
moves / CanonicalSamplingMover.ccio / silent / SilentStruct.hh
canonical_sampling / CanonicalSamplingMover.ccio / silent / SilentStruct.hh
moves / CanonicalSamplingMover.ccio / silent / SilentStructFactory.hh
canonical_sampling / CanonicalSamplingMover.ccio / silent / SilentStructFactory.hh
moves / CanonicalSamplingMover.ccscoring / constraints / util.hh
canonical_sampling / CanonicalSamplingMover.ccscoring / constraints / util.hh
moves / CanonicalSamplingMover.hhpose / Pose.hh
canonical_sampling / CanonicalSamplingMover.hhpose / Pose.hh
moves / CanonicalSamplingMover.hhscoring / ScoreFunction.hh
hybridization / CartesianHybridize.ccscoring / constraints / AtomPairConstraint.hh
hybridization / CartesianHybridize.ccoptimization / AtomTreeMinimizer.hh
hybridization / CartesianHybridize.ccpose / datacache / CacheableDataType.hh
hybridization / CartesianHybridize.ccoptimization / CartesianMinimizer.hh
hybridization / CartesianHybridize.ccchemical / ChemicalManager.hh
hybridization / CartesianHybridize.ccfragment / ConstantLengthFragSet.hh
hybridization / CartesianHybridize.ccscoring / dssp / Dssp.hh
hybridization / CartesianHybridize.ccscoring / Energies.hh
hybridization / CartesianHybridize.ccscoring / methods / EnergyMethodOptions.hh
hybridization / CartesianHybridize.cckinematics / FoldTree.hh
hybridization / CartesianHybridize.ccfragment / FragData.hh
hybridization / CartesianHybridize.ccfragment / FragmentIO.hh
hybridization / CartesianHybridize.ccfragment / FragSet.hh
hybridization / CartesianHybridize.ccfragment / Frame.hh
hybridization / CartesianHybridize.ccfragment / FrameIterator.hh
hybridization / CartesianHybridize.ccimport_pose / import_pose.hh
hybridization / CartesianHybridize.ccoptimization / MinimizerOptions.hh
hybridization / CartesianHybridize.cckinematics / MoveMap.hh
hybridization / CartesianHybridize.ccpack / pack_rotamers.hh
hybridization / CartesianHybridize.ccpack / task / PackerTask.hh
hybridization / CartesianHybridize.ccpose / PDBInfo.hh
hybridization / CartesianHybridize.ccpose / Pose.hh
hybridization / CartesianHybridize.ccpose / Remarks.hh
hybridization / CartesianHybridize.ccscoring / rms_util.hh
hybridization / CartesianHybridize.ccscoring / constraints / ScalarWeightedFunc.hh
hybridization / CartesianHybridize.ccscoring / ScoreFunction.hh
hybridization / CartesianHybridize.ccscoring / ScoreFunctionFactory.hh
hybridization / CartesianHybridize.ccsequence / Sequence.hh
hybridization / CartesianHybridize.ccsequence / SequenceAlignment.hh
hybridization / CartesianHybridize.ccid / SequenceMapping.hh
hybridization / CartesianHybridize.ccscoring / constraints / SOGFunc.hh
hybridization / CartesianHybridize.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
hybridization / CartesianHybridize.ccconformation / symmetry / SymmetricConformation.hh
hybridization / CartesianHybridize.ccscoring / symmetry / SymmetricScoreFunction.hh
hybridization / CartesianHybridize.ccconformation / symmetry / SymmetryInfo.hh
hybridization / CartesianHybridize.ccpack / task / TaskFactory.hh
hybridization / CartesianHybridize.ccpack / task / operation / TaskOperations.hh
hybridization / CartesianHybridize.ccpose / symmetry / util.hh
hybridization / CartesianHybridize.ccconformation / util.hh
hybridization / CartesianHybridize.ccpose / util.hh
hybridization / CartesianHybridize.ccsequence / util.hh
hybridization / CartesianHybridize.hhid / AtomID.hh
hybridization / CartesianHybridize.hhid / AtomID_Map.hh
hybridization / CartesianHybridize.hhfragment / FragData.hh
hybridization / CartesianHybridize.hhfragment / FragSet.hh
hybridization / CartesianHybridize.hhutil / kinematics_util.hh
hybridization / CartesianHybridize.hhscoring / ScoreFunction.hh
hybridization / CartesianSampler.ccscoring / constraints / AtomPairConstraint.hh
hybridization / CartesianSampler.ccoptimization / AtomTreeMinimizer.hh
hybridization / CartesianSampler.ccpose / datacache / CacheableDataType.hh
hybridization / CartesianSampler.ccoptimization / CartesianMinimizer.hh
hybridization / CartesianSampler.ccchemical / ChemicalManager.hh
hybridization / CartesianSampler.ccfragment / ConstantLengthFragSet.hh
hybridization / CartesianSampler.ccscoring / electron_density / ElectronDensity.hh
hybridization / CartesianSampler.ccscoring / Energies.hh
hybridization / CartesianSampler.ccscoring / methods / EnergyMethodOptions.hh
hybridization / CartesianSampler.cckinematics / FoldTree.hh
hybridization / CartesianSampler.ccfragment / FragData.hh
hybridization / CartesianSampler.ccfragment / FragmentIO.hh
hybridization / CartesianSampler.ccfragment / FragSet.hh
hybridization / CartesianSampler.ccfragment / Frame.hh
hybridization / CartesianSampler.ccfragment / FrameIterator.hh
hybridization / CartesianSampler.ccoptimization / MinimizerOptions.hh
hybridization / CartesianSampler.cckinematics / MoveMap.hh
hybridization / CartesianSampler.ccpack / pack_rotamers.hh
hybridization / CartesianSampler.ccpack / task / PackerTask.hh
hybridization / CartesianSampler.ccpose / PDBInfo.hh
hybridization / CartesianSampler.ccpose / Pose.hh
hybridization / CartesianSampler.ccpose / Remarks.hh
hybridization / CartesianSampler.ccscoring / rms_util.hh
hybridization / CartesianSampler.ccscoring / constraints / ScalarWeightedFunc.hh
hybridization / CartesianSampler.ccscoring / ScoreFunction.hh
hybridization / CartesianSampler.ccscoring / ScoreFunctionFactory.hh
hybridization / CartesianSampler.ccpose / selection.hh
hybridization / CartesianSampler.ccsequence / Sequence.hh
hybridization / CartesianSampler.ccsequence / SequenceAlignment.hh
hybridization / CartesianSampler.ccid / SequenceMapping.hh
hybridization / CartesianSampler.ccscoring / constraints / SOGFunc.hh
hybridization / CartesianSampler.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
hybridization / CartesianSampler.ccconformation / symmetry / SymmetricConformation.hh
hybridization / CartesianSampler.ccscoring / symmetry / SymmetricScoreFunction.hh
hybridization / CartesianSampler.ccconformation / symmetry / SymmetryInfo.hh
hybridization / CartesianSampler.ccpack / task / TaskFactory.hh
hybridization / CartesianSampler.ccpack / task / operation / TaskOperations.hh
hybridization / CartesianSampler.ccpose / symmetry / util.hh
hybridization / CartesianSampler.ccconformation / util.hh
hybridization / CartesianSampler.ccpose / util.hh
hybridization / CartesianSampler.ccsequence / util.hh
hybridization / CartesianSampler.hhid / AtomID.hh
hybridization / CartesianSampler.hhid / AtomID_Map.hh
hybridization / CartesianSampler.hhfragment / FragData.hh
hybridization / CartesianSampler.hhfragment / FragSet.hh
hybridization / CartesianSampler.hhutil / kinematics_util.hh
hybridization / CartesianSampler.hhscoring / ScoreFunction.hh
toolbox / pose_metric_calculators / CatPiCalculator.ccpose / Pose.hh
toolbox / pose_metric_calculators / CatPiCalculator.ccconformation / Residue.hh
toolbox / pose_metric_calculators / CatPiCalculator.hhpose / Pose.fwd.hh
toolbox / pose_metric_calculators / CatPiCalculator.hhpose / metrics / PoseMetricCalculatorBase.hh
toolbox / pose_metric_calculators / CatPiCalculator.hhtypes.hh
loops / loop_closure / ccd / ccd_closure.cckinematics / MoveMap.hh
loops / loop_closure / ccd / ccd_closure.ccpose / Pose.hh
loops / loop_closure / ccd / ccd_closure.ccscoring / Ramachandran.hh
loops / loop_closure / ccd / ccd_closure.ccconformation / Residue.hh
loops / loop_closure / ccd / ccd_closure.ccchemical / ResidueConnection.hh
loops / loop_closure / ccd / ccd_closure.ccscoring / ScoringManager.hh
loops / loop_closure / ccd / ccd_closure.cckinematics / Stub.hh
loops / loop_closure / ccd / ccd_closure.cctypes.hh
loops / loop_closure / ccd / ccd_closure.hhkinematics / MoveMap.fwd.hh
loops / loop_closure / ccd / ccd_closure.hhpose / Pose.fwd.hh
loops / loop_closure / ccd / ccd_closure.hhtypes.hh
loops / loop_closure / ccd / CcdLoopClosureMover.cckinematics / MoveMap.hh
loops / loop_closure / ccd / CcdLoopClosureMover.hhkinematics / MoveMap.fwd.hh
loops / loop_closure / ccd / CcdLoopClosureMover.hhpose / Pose.fwd.hh
loops / loop_closure / ccd / CcdLoopClosureMover.hhtypes.hh
antibody / CDRH3Modeler.ccfragment / BBTorsionSRFD.hh
antibody / CDRH3Modeler.ccchemical / ChemicalManager.fwd.hh
antibody / CDRH3Modeler.cckinematics / FoldTree.hh
antibody / CDRH3Modeler.ccfragment / FragData.hh
antibody / CDRH3Modeler.ccfragment / FragSet.hh
antibody / CDRH3Modeler.ccimport_pose / import_pose.hh
antibody / CDRH3Modeler.ccpack / task / operation / NoRepackDisulfides.hh
antibody / CDRH3Modeler.ccpack / task / operation / OperateOnCertainResidues.hh
antibody / CDRH3Modeler.ccpack / task / PackerTask.hh
antibody / CDRH3Modeler.ccpose / PDBInfo.hh
antibody / CDRH3Modeler.ccpose / Pose.hh
antibody / CDRH3Modeler.ccpack / task / operation / ResFilters.hh
antibody / CDRH3Modeler.ccpack / task / operation / ResLvlTaskOperations.hh
antibody / CDRH3Modeler.ccpack / dunbrack / RotamerConstraint.hh
antibody / CDRH3Modeler.ccscoring / ScoreFunction.hh
antibody / CDRH3Modeler.ccscoring / ScoreFunctionFactory.hh
antibody / CDRH3Modeler.ccpack / task / TaskFactory.hh
antibody / CDRH3Modeler.ccpack / task / operation / TaskOperations.hh
antibody / CDRH3Modeler.ccid / types.hh
antibody / CDRH3Modeler.ccpack / rotamer_set / UnboundRotamersOperation.hh
antibody / CDRH3Modeler.ccpose / util.hh
antibody / CDRH3Modeler.ccchemical / VariantType.hh
antibody / CDRH3Modeler.hhfragment / FragData.fwd.hh
antibody / CDRH3Modeler.hhfragment / FragSet.fwd.hh
antibody / CDRH3Modeler.hhpose / Pose.hh
antibody / CDRH3Modeler.hhscoring / ScoreFunction.fwd.hh
antibody / CDRH3Modeler.hhpack / task / TaskFactory.fwd.hh
antibody2 / CDRsMinPackMin.cckinematics / MoveMap.hh
antibody2 / CDRsMinPackMin.ccpack / task / PackerTask.hh
antibody2 / CDRsMinPackMin.ccscoring / ScoreFunction.hh
antibody2 / CDRsMinPackMin.ccscoring / ScoreFunctionFactory.hh
antibody2 / CDRsMinPackMin.ccpack / task / TaskFactory.hh
antibody2 / CDRsMinPackMin.ccpose / util.hh
antibody2 / CDRsMinPackMin.ccchemical / VariantType.hh
antibody2 / CDRsMinPackMin.hhkinematics / FoldTree.fwd.hh
antibody2 / CDRsMinPackMin.hhkinematics / MoveMap.fwd.hh
antibody2 / CDRsMinPackMin.hhpose / Pose.hh
antibody2 / CDRsMinPackMin.hhscoring / ScoreFunction.fwd.hh
antibody2 / CDRsMinPackMin.hhpack / task / TaskFactory.fwd.hh
antibody2 / CDRsMinPackMin.hhtypes.hh
relax / CentroidRelax.ccscoring / methods / EnergyMethodOptions.hh
relax / CentroidRelax.cckinematics / MoveMap.hh
relax / CentroidRelax.ccpack / task / PackerTask.hh
relax / CentroidRelax.ccpose / Pose.hh
relax / CentroidRelax.ccconformation / Residue.hh
relax / CentroidRelax.ccconformation / ResidueFactory.hh
relax / CentroidRelax.ccchemical / ResidueTypeSet.hh
relax / CentroidRelax.ccscoring / ScoreFunction.hh
relax / CentroidRelax.ccscoring / ScoreFunctionFactory.hh
relax / CentroidRelax.ccscoring / ScoreType.hh
relax / CentroidRelax.ccpack / task / TaskFactory.hh
relax / CentroidRelax.ccpose / symmetry / util.hh
relax / CentroidRelax.hhkinematics / MoveMap.hh
relax / CentroidRelax.hhpose / Pose.fwd.hh
relax / CentroidRelax.hhscoring / ScoreFunction.hh
relax / CentroidRelax.hhscoring / ScoreType.hh
surface_docking / CentroidRelaxMover.ccpose / Pose.hh
surface_docking / CentroidRelaxMover.ccscoring / ScoreFunction.hh
surface_docking / CentroidRelaxMover.ccscoring / ScoreFunctionFactory.hh
surface_docking / CentroidRelaxMover.hhkinematics / MoveMap.fwd.hh
surface_docking / CentroidRelaxMover.hhkinematics / MoveMap.hh
surface_docking / CentroidRelaxMover.hhpose / Pose.fwd.hh
surface_docking / CentroidRelaxMover.hhscoring / ScoreFunction.fwd.hh
surface_docking / CentroidRelaxMover.hhtypes.hh
forge / methods / chainbreak_eval.ccscoring / methods / ChainbreakEnergy.hh
forge / methods / chainbreak_eval.ccscoring / EnergyMap.hh
forge / methods / chainbreak_eval.cckinematics / FoldTree.hh
forge / methods / chainbreak_eval.ccscoring / methods / LinearChainbreakEnergy.hh
forge / methods / chainbreak_eval.cckinematics / MoveMap.hh
forge / methods / chainbreak_eval.ccpose / Pose.hh
forge / methods / chainbreak_eval.ccscoring / ScoreFunction.hh
forge / methods / chainbreak_eval.ccscoring / ScoreType.hh
forge / methods / chainbreak_eval.hhpose / Pose.fwd.hh
forge / methods / chainbreak_eval.hhtypes.hh
ligand_docking / ChainExistsFilter.ccconformation / Conformation.hh
ligand_docking / ChainExistsFilter.ccpose / Pose.hh
ligand_docking / ChainExistsFilter.cctypes.hh
ligand_docking / ChainExistsFilter.ccpose / util.hh
ligand_docking / ChainExistsFilter.hhtypes.hh
moves / ChangeFoldTreeMover.hhkinematics / FoldTree.hh
moves / ChangeFoldTreeMover.hhpose / Pose.hh
moves / ChangeFoldTreeMover.hhscoring / ScoreFunction.fwd.hh
moves / ChangeFoldTreeMover.hhtypes.hh
toolbox / pose_metric_calculators / ChargeCalculator.ccchemical / AA.hh
toolbox / pose_metric_calculators / ChargeCalculator.ccpose / Pose.hh
toolbox / pose_metric_calculators / ChargeCalculator.ccchemical / ResidueType.hh
toolbox / pose_metric_calculators / ChargeCalculator.hhpose / Pose.fwd.hh
toolbox / pose_metric_calculators / ChargeCalculator.hhpose / metrics / PoseMetricCalculatorBase.hh
toolbox / pose_metric_calculators / ChargeCalculator.hhtypes.hh
features / ChargeChargeFeatures.ccchemical / AA.hh
features / ChargeChargeFeatures.ccconformation / Atom.hh
features / ChargeChargeFeatures.ccpose / Pose.hh
features / ChargeChargeFeatures.ccconformation / Residue.hh
features / ChargeChargeFeatures.cckinematics / Stub.hh
features / ChargeChargeFeatures.cctypes.hh
features / ChargeChargeFeatures.hhtypes.hh
features / ChargeChargeFeaturesCreator.hhtypes.hh
qsar / scoring_grid / ChargeGrid.ccpose / Pose.hh
qsar / scoring_grid / ChargeGrid.ccconformation / Residue.hh
qsar / scoring_grid / ChargeGrid.ccpose / util.hh
checkpoint / CheckPointer.ccio / silent / BinaryProteinSilentStruct.hh
checkpoint / CheckPointer.ccchemical / ChemicalManager.hh
checkpoint / CheckPointer.ccio / pdb / file_data.hh
checkpoint / CheckPointer.ccpose / Pose.hh
checkpoint / CheckPointer.ccchemical / ResidueTypeSet.fwd.hh
checkpoint / CheckPointer.ccio / silent / silent.fwd.hh
checkpoint / CheckPointer.ccio / silent / SilentFileData.hh
checkpoint / CheckPointer.ccio / silent / SilentStruct.hh
checkpoint / CheckPointer.hhpose / Pose.fwd.hh
checkpoint / CheckPointer.hhtypes.hh
sparta / ChemicalShiftEvaluator.ccpose / Pose.hh
sparta / ChemicalShiftEvaluator.ccio / silent / SilentStruct.hh
sparta / ChemicalShiftEvaluator.hhpose / Pose.fwd.hh
sparta / ChemicalShiftEvaluatorCreator.ccio / silent / silent.fwd.hh
sparta / ChemicalShiftEvaluatorCreator.ccio / silent / SilentStruct.hh
sparta / ChemicalShiftEvaluatorCreator.hhtypes.hh
simple_moves / chiral / ChiralMover.ccid / AtomID.hh
simple_moves / chiral / ChiralMover.ccscoring / constraints / AtomPairConstraint.hh
simple_moves / chiral / ChiralMover.ccchemical / ChemicalManager.hh
simple_moves / chiral / ChiralMover.ccconformation / Conformation.hh
simple_moves / chiral / ChiralMover.ccscoring / constraints / ConstraintSet.hh
simple_moves / chiral / ChiralMover.ccchemical / Patch.hh
simple_moves / chiral / ChiralMover.ccpose / Pose.hh
simple_moves / chiral / ChiralMover.ccconformation / Residue.functions.hh
simple_moves / chiral / ChiralMover.ccconformation / Residue.hh
simple_moves / chiral / ChiralMover.ccchemical / ResidueType.hh
simple_moves / chiral / ChiralMover.ccchemical / ResidueTypeSet.hh
simple_moves / chiral / ChiralMover.ccpose / util.hh
simple_moves / chiral / ChiralMover.ccconformation / util.hh
simple_moves / chiral / ChiralMover.ccchemical / VariantType.hh
simple_moves / chiral / ChiralMover.hhchemical / Patch.hh
simple_moves / chiral / ChiralMover.hhpose / Pose.fwd.hh
simple_moves / chiral / ChiralMover.hhchemical / ResidueType.hh
simple_filters / ChiWellRmsdEvaluator.ccpack / dunbrack / DunbrackRotamer.fwd.hh
simple_filters / ChiWellRmsdEvaluator.ccpose / Pose.hh
simple_filters / ChiWellRmsdEvaluator.ccconformation / Residue.hh
simple_filters / ChiWellRmsdEvaluator.ccscoring / rms_util.hh
simple_filters / ChiWellRmsdEvaluator.ccpack / dunbrack / RotamerLibrary.hh
simple_filters / ChiWellRmsdEvaluator.ccpose / metrics / simple_calculators / SasaCalculator.hh
simple_filters / ChiWellRmsdEvaluator.ccio / silent / SilentStruct.hh
simple_filters / ChiWellRmsdEvaluator.hhpose / Pose.fwd.hh
simple_filters / ChiWellRmsdEvaluator.hhscoring / rms_util.hh
simple_filters / ChiWellRmsdEvaluator.hhio / silent / silent.fwd.hh
simple_filters / ChiWellRmsdEvaluatorCreator.ccimport_pose / import_pose.hh
simple_filters / ChiWellRmsdEvaluatorCreator.ccpose / Pose.hh
simple_filters / ChiWellRmsdEvaluatorCreator.ccio / silent / silent.fwd.hh
simple_filters / ChiWellRmsdEvaluatorCreator.ccio / silent / SilentStruct.hh
simple_filters / ChiWellRmsdEvaluatorCreator.hhtypes.hh
nonlocal / Chunk.cckinematics / MoveMap.hh
nonlocal / Chunk.cctypes.hh
nonlocal / Chunk.hhkinematics / MoveMap.hh
nonlocal / Chunk.hhtypes.hh
hybridization / ChunkTrialMover.ccid / AtomID.hh
hybridization / ChunkTrialMover.ccid / AtomID_Map.hh
hybridization / ChunkTrialMover.cckinematics / FoldTree.hh
hybridization / ChunkTrialMover.ccfragment / Frame.hh
hybridization / ChunkTrialMover.ccfragment / FrameIterator.hh
hybridization / ChunkTrialMover.ccutil / kinematics_util.hh
hybridization / ChunkTrialMover.ccpose / PDBInfo.hh
hybridization / ChunkTrialMover.ccconformation / Residue.hh
hybridization / ChunkTrialMover.hhid / AtomID.hh
hybridization / ChunkTrialMover.hhid / AtomID_Map.hh
hybridization / ChunkTrialMover.hhfragment / Frame.hh
hybridization / ChunkTrialMover.hhfragment / FrameIterator.hh
hybridization / ChunkTrialMover.hhutil / kinematics_util.hh
fldsgn / CircularPermutation.ccconformation / Conformation.hh
fldsgn / CircularPermutation.cckinematics / FoldTree.hh
fldsgn / CircularPermutation.cckinematics / MoveMap.hh
fldsgn / CircularPermutation.ccpose / Pose.hh
fldsgn / CircularPermutation.ccconformation / Residue.hh
fldsgn / CircularPermutation.ccconformation / ResidueFactory.hh
fldsgn / CircularPermutation.ccchemical / ResidueTypeSet.hh
fldsgn / CircularPermutation.ccpose / symmetry / util.hh
fldsgn / CircularPermutation.ccpose / util.hh
fldsgn / CircularPermutation.hhkinematics / MoveMap.fwd.hh
fldsgn / CircularPermutation.hhpose / Pose.fwd.hh
fldsgn / CircularPermutation.hhtypes.hh
topology_broker / ClaimerMessage.hhtypes.hh
toolbox / pose_metric_calculators / ClashCountCalculator.ccscoring / AtomVDW.hh
toolbox / pose_metric_calculators / ClashCountCalculator.ccchemical / ChemicalManager.fwd.hh
toolbox / pose_metric_calculators / ClashCountCalculator.ccpose / Pose.hh
toolbox / pose_metric_calculators / ClashCountCalculator.ccconformation / Residue.hh
toolbox / pose_metric_calculators / ClashCountCalculator.ccscoring / ScoringManager.hh
toolbox / pose_metric_calculators / ClashCountCalculator.hhpose / Pose.fwd.hh
toolbox / pose_metric_calculators / ClashCountCalculator.hhpose / metrics / PoseMetricCalculatorBase.hh
toolbox / pose_metric_calculators / ClashCountCalculator.hhtypes.hh
simple_filters / ClashEvaluator.ccpose / Pose.hh
simple_filters / ClashEvaluator.ccscoring / rms_util.hh
simple_filters / ClashEvaluator.ccio / silent / SilentStruct.hh
simple_filters / ClashEvaluator.hhpose / Pose.hh
simple_filters / ClashEvaluator.hhkinematics / RT.hh
simple_filters / ClashEvaluator.hhio / silent / silent.fwd.hh
simple_filters / ClashEvaluator.hhkinematics / Stub.hh
abinitio / ClassicAbinitio.ccscoring / constraints / ConstraintSet.fwd.hh
abinitio / ClassicAbinitio.ccscoring / constraints / ConstraintSet.hh
abinitio / ClassicAbinitio.cckinematics / MoveMap.hh
abinitio / ClassicAbinitio.ccpose / Pose.hh
abinitio / ClassicAbinitio.ccscoring / rms_util.hh
abinitio / ClassicAbinitio.ccscoring / ScoreFunction.fwd.hh
abinitio / ClassicAbinitio.ccscoring / ScoreFunctionFactory.hh
abinitio / ClassicAbinitio.ccscoring / ScoreType.hh
abinitio / ClassicAbinitio.cctypes.hh
abinitio / ClassicAbinitio.hhfragment / FragSet.fwd.hh
abinitio / ClassicAbinitio.hhkinematics / MoveMap.fwd.hh
abinitio / ClassicAbinitio.hhpose / Pose.fwd.hh
abinitio / ClassicAbinitio.hhscoring / ScoreFunction.fwd.hh
abinitio / ClassicAbinitio.hhscoring / ScoreType.hh
abinitio / ClassicAbinitio.hhtypes.hh
qsar / scoring_grid / ClassicGrid.ccpose / Pose.hh
qsar / scoring_grid / ClassicGrid.ccconformation / Residue.hh
match / downstream / ClassicMatchAlgorithm.ccconformation / Residue.hh
match / downstream / ClassicMatchAlgorithm.ccchemical / ResidueType.hh
match / downstream / ClassicMatchAlgorithm.hhconformation / Residue.fwd.hh
match / downstream / ClassicMatchAlgorithm.hhchemical / ResidueType.fwd.hh
match / downstream / ClassicMatchAlgorithm.hhtypes.hh
relax / ClassicRelax.ccpose / datacache / CacheableDataType.hh
relax / ClassicRelax.ccfragment / ConstantLengthFragSet.hh
relax / ClassicRelax.cckinematics / MoveMap.hh
relax / ClassicRelax.ccpack / task / PackerTask.hh
relax / ClassicRelax.ccpose / Pose.hh
relax / ClassicRelax.ccio / pdb / pose_io.hh
relax / ClassicRelax.ccscoring / rms_util.hh
relax / ClassicRelax.ccscoring / ScoreFunction.hh
relax / ClassicRelax.ccscoring / ScoreType.hh
relax / ClassicRelax.ccconformation / symmetry / SymmetricConformation.hh
relax / ClassicRelax.ccconformation / symmetry / SymmetryInfo.hh
relax / ClassicRelax.ccpack / task / TaskFactory.hh
relax / ClassicRelax.ccpose / symmetry / util.hh
relax / ClassicRelax.ccpose / util.hh
relax / ClassicRelax.hhkinematics / MoveMap.fwd.hh
relax / ClassicRelax.hhpose / Pose.fwd.hh
relax / ClassicRelax.hhscoring / ScoreFunction.fwd.hh
relax / ClassicRelax.hhscoring / ScoreType.hh
simple_moves / ClearConstraintsMover.ccpose / Pose.hh
seeded_abinitio / CloseFold.ccchemical / AtomType.hh
seeded_abinitio / CloseFold.ccchemical / ChemicalManager.fwd.hh
seeded_abinitio / CloseFold.ccconformation / Conformation.hh
seeded_abinitio / CloseFold.ccscoring / dssp / Dssp.hh
seeded_abinitio / CloseFold.cckinematics / FoldTree.hh
seeded_abinitio / CloseFold.ccfragment / FragmentIO.hh
seeded_abinitio / CloseFold.ccfragment / FragSet.hh
seeded_abinitio / CloseFold.ccfragment / Frame.hh
seeded_abinitio / CloseFold.ccfragment / FrameIterator.hh
seeded_abinitio / CloseFold.ccimport_pose / import_pose.hh
seeded_abinitio / CloseFold.cckinematics / MoveMap.hh
seeded_abinitio / CloseFold.ccpose / Pose.fwd.hh
seeded_abinitio / CloseFold.ccpose / Pose.hh
seeded_abinitio / CloseFold.ccconformation / Residue.hh
seeded_abinitio / CloseFold.ccconformation / ResidueFactory.hh
seeded_abinitio / CloseFold.ccchemical / ResidueSelector.hh
seeded_abinitio / CloseFold.ccchemical / ResidueTypeSet.fwd.hh
seeded_abinitio / CloseFold.ccscoring / ScoreFunction.fwd.hh
seeded_abinitio / CloseFold.ccscoring / ScoreFunction.hh
seeded_abinitio / CloseFold.ccutil / SwitchResidueTypeSet.hh
seeded_abinitio / CloseFold.cctypes.hh
seeded_abinitio / CloseFold.ccchemical / util.hh
seeded_abinitio / CloseFold.ccfragment / util.hh
seeded_abinitio / CloseFold.ccpose / util.hh
seeded_abinitio / CloseFold.ccchemical / VariantType.hh
seeded_abinitio / CloseFold.hhfragment / FragData.hh
seeded_abinitio / CloseFold.hhfragment / FragSet.fwd.hh
seeded_abinitio / CloseFold.hhfragment / Frame.hh
seeded_abinitio / CloseFold.hhpose / Pose.fwd.hh
seeded_abinitio / CloseFold.hhscoring / ScoreFunction.fwd.hh
antibody2 / CloseOneCDRLoop.ccconformation / Conformation.hh
antibody2 / CloseOneCDRLoop.cckinematics / FoldTree.hh
antibody2 / CloseOneCDRLoop.cckinematics / MoveMap.hh
antibody2 / CloseOneCDRLoop.ccpose / Pose.hh
antibody2 / CloseOneCDRLoop.hhkinematics / MoveMap.fwd.hh
antibody2 / CloseOneCDRLoop.hhpose / Pose.hh
cluster / cluster.ccscoring / Energies.hh
cluster / cluster.ccio / silent / ProteinSilentStruct.hh
cluster / cluster.ccconformation / Residue.hh
cluster / cluster.ccscoring / rms_util.hh
cluster / cluster.ccscoring / rms_util.tmpl.hh
cluster / cluster.ccscoring / ScoreFunction.hh
cluster / cluster.ccio / silent / silent.fwd.hh
cluster / cluster.ccio / silent / SilentFileData.hh
cluster / cluster.ccio / silent / SilentStructFactory.hh
cluster / cluster.ccscoring / constraints / util.hh
cluster / cluster.ccpose / util.hh
cluster / cluster.ccpose / symmetry / util.hh
cluster / cluster.hhpose / Pose.hh
cluster / cluster.hhscoring / ScoreFunction.hh
toolbox / Cluster.hhtypes.hh
toolbox / Cluster.impl.hhio / silent / SilentStruct.hh
toolbox / Cluster.impl.hhtypes.hh
coarse_rna / CoarseRNA_DeNovoProtocol.ccid / AtomID.hh
coarse_rna / CoarseRNA_DeNovoProtocol.ccio / silent / BinaryRNASilentStruct.hh
coarse_rna / CoarseRNA_DeNovoProtocol.ccscoring / constraints / ConstraintSet.hh
coarse_rna / CoarseRNA_DeNovoProtocol.ccid / DOF_ID.hh
coarse_rna / CoarseRNA_DeNovoProtocol.ccpose / Pose.hh
coarse_rna / CoarseRNA_DeNovoProtocol.ccio / pdb / pose_io.hh
coarse_rna / CoarseRNA_DeNovoProtocol.ccscoring / rms_util.hh
coarse_rna / CoarseRNA_DeNovoProtocol.ccscoring / ScoreFunction.fwd.hh
coarse_rna / CoarseRNA_DeNovoProtocol.ccscoring / ScoreFunction.hh
coarse_rna / CoarseRNA_DeNovoProtocol.ccscoring / ScoreFunctionFactory.hh
coarse_rna / CoarseRNA_DeNovoProtocol.ccscoring / ScoreType.hh
coarse_rna / CoarseRNA_DeNovoProtocol.cckinematics / ShortestPathInFoldTree.hh
coarse_rna / CoarseRNA_DeNovoProtocol.ccio / silent / SilentFileData.hh
coarse_rna / CoarseRNA_DeNovoProtocol.cctypes.hh
coarse_rna / CoarseRNA_DeNovoProtocol.hhscoring / constraints / ConstraintSet.fwd.hh
coarse_rna / CoarseRNA_DeNovoProtocol.hhpose / Pose.fwd.hh
coarse_rna / CoarseRNA_DeNovoProtocol.hhscoring / ScoreFunction.fwd.hh
coarse_rna / CoarseRNA_DeNovoProtocol.hhtypes.hh
coarse_rna / CoarseRNA_Fragments.ccid / AtomID.hh
coarse_rna / CoarseRNA_Fragments.ccchemical / ChemicalManager.hh
coarse_rna / CoarseRNA_Fragments.cckinematics / FoldTree.hh
coarse_rna / CoarseRNA_Fragments.ccimport_pose / import_pose.hh
coarse_rna / CoarseRNA_Fragments.ccpose / MiniPose.hh
coarse_rna / CoarseRNA_Fragments.ccpose / Pose.hh
coarse_rna / CoarseRNA_Fragments.ccconformation / Residue.hh
coarse_rna / CoarseRNA_Fragments.ccchemical / ResidueTypeSet.hh
coarse_rna / CoarseRNA_Fragments.cctypes.hh
coarse_rna / CoarseRNA_Fragments.ccpose / util.hh
coarse_rna / CoarseRNA_Fragments.hhpose / MiniPose.hh
coarse_rna / CoarseRNA_Fragments.hhpose / Pose.fwd.hh
coarse_rna / CoarseRNA_Fragments.hhtypes.hh
coarse_rna / CoarseRNA_LoopCloser.cckinematics / tree / Atom.hh
coarse_rna / CoarseRNA_LoopCloser.ccid / AtomID.hh
coarse_rna / CoarseRNA_LoopCloser.cckinematics / AtomTree.hh
coarse_rna / CoarseRNA_LoopCloser.ccid / DOF_ID.hh
coarse_rna / CoarseRNA_LoopCloser.cckinematics / FoldTree.hh
coarse_rna / CoarseRNA_LoopCloser.ccid / NamedAtomID.hh
coarse_rna / CoarseRNA_LoopCloser.ccpose / Pose.hh
coarse_rna / CoarseRNA_LoopCloser.ccchemical / ResidueType.hh
coarse_rna / CoarseRNA_LoopCloser.ccscoring / ScoreFunction.hh
coarse_rna / CoarseRNA_LoopCloser.ccid / TorsionID.hh
coarse_rna / CoarseRNA_LoopCloser.cctypes.hh
coarse_rna / CoarseRNA_LoopCloser.ccpose / util.hh
coarse_rna / CoarseRNA_LoopCloser.ccchemical / VariantType.hh
coarse_rna / CoarseRNA_LoopCloser.hhkinematics / tree / Atom.fwd.hh
coarse_rna / CoarseRNA_LoopCloser.hhid / DOF_ID.hh
coarse_rna / CoarseRNA_LoopCloser.hhid / NamedAtomID.hh
coarse_rna / CoarseRNA_LoopCloser.hhpose / Pose.fwd.hh
coarse_rna / CoarseRNA_LoopCloser.hhscoring / ScoreFunction.hh
coarse_rna / CoarseRNA_LoopCloser.hhtypes.hh
simple_filters / COFilter.ccscoring / methods / ContactOrderEnergy.hh
simple_filters / COFilter.ccpose / Pose.hh
simple_filters / COFilter.ccscoring / ScoreFunction.fwd.hh
simple_filters / COFilter.cctypes.hh
simple_filters / COFilter.hhpose / Pose.fwd.hh
domain_assembly / CombineChainsMover.ccpose / annotated_sequence.hh
domain_assembly / CombineChainsMover.ccchemical / ChemicalManager.hh
domain_assembly / CombineChainsMover.ccchemical / ResidueTypeSet.fwd.hh
domain_assembly / CombineChainsMover.ccsequence / Sequence.hh
domain_assembly / CombineChainsMover.ccsequence / SequenceAlignment.hh
domain_assembly / CombineChainsMover.cctypes.hh
constraints_additional / CombinedConstraintEvaluator.ccscoring / constraints / Constraint.hh
constraints_additional / CombinedConstraintEvaluator.ccscoring / constraints / ConstraintSet.hh
constraints_additional / CombinedConstraintEvaluator.ccscoring / ScoreType.hh
constraints_additional / CombinedConstraintEvaluator.ccio / silent / SilentStruct.hh
constraints_additional / CombinedConstraintEvaluator.hhpose / Pose.fwd.hh
constraints_additional / CombinedConstraintEvaluator.hhio / silent / silent.fwd.hh
constraints_additional / CombinedConstraintEvaluatorCreator.ccio / silent / silent.fwd.hh
constraints_additional / CombinedConstraintEvaluatorCreator.ccio / silent / SilentStruct.hh
constraints_additional / CombinedConstraintEvaluatorCreator.hhtypes.hh
ligand_docking / CompleteConnectionsFilter.ccconformation / Conformation.hh
ligand_docking / CompleteConnectionsFilter.ccpose / Pose.hh
ligand_docking / CompleteConnectionsFilter.cctypes.hh
ligand_docking / CompleteConnectionsFilter.ccpose / util.hh
ligand_docking / CompleteConnectionsFilter.hhtypes.hh
moves / CompositionMover.hhpose / Pose.fwd.hh
ligand_docking / CompoundTranslate.cckinematics / Jump.hh
ligand_docking / CompoundTranslate.cctypes.hh
ligand_docking / CompoundTranslate.ccpose / util.hh
features / helixAssembly / ConcurrencyTest.ccconformation / Atom.hh
features / helixAssembly / ConcurrencyTest.ccconformation / Residue.hh
features / helixAssembly / ConcurrencyTest.cctypes.hh
features / helixAssembly / ConcurrencyTest.hhconformation / Atom.hh
features / helixAssembly / ConcurrencyTest.hhconformation / Residue.hh
features / helixAssembly / ConcurrencyTest.hhtypes.hh
features / helixAssembly / ConcurrencyTestCreator.hhtypes.hh
viewer / ConformationViewer.hhid / AtomID.hh
viewer / ConformationViewer.hhconformation / Conformation.fwd.hh
viewer / ConformationViewer.hhconformation / signals / ConnectionEvent.fwd.hh
viewer / ConformationViewer.hhconformation / Residue.fwd.hh
viewer / ConformationViewer.hhconformation / signals / XYZEvent.fwd.hh
docking / ConformerSwitchMover.ccpose / datacache / CacheableDataType.hh
docking / ConformerSwitchMover.ccchemical / ChemicalManager.fwd.hh
docking / ConformerSwitchMover.ccpose / Pose.hh
docking / ConformerSwitchMover.ccscoring / rms_util.hh
docking / ConformerSwitchMover.ccscoring / ScoreFunction.hh
docking / ConformerSwitchMover.ccscoring / ScoreType.hh
docking / ConformerSwitchMover.cctypes.hh
docking / ConformerSwitchMover.ccid / types.hh
docking / ConformerSwitchMover.ccpose / util.hh
docking / ConformerSwitchMover.ccpose / util.tmpl.hh
docking / ConformerSwitchMover.hhtypes.hh
forge / build / ConnectRight.ccid / AtomID.hh
forge / build / ConnectRight.ccconformation / Conformation.hh
forge / build / ConnectRight.cckinematics / FoldTree.hh
forge / build / ConnectRight.ccconformation / signals / LengthEvent.hh
forge / build / ConnectRight.cckinematics / MoveMap.hh
forge / build / ConnectRight.ccpose / PDBInfo.hh
forge / build / ConnectRight.ccpose / util.hh
forge / build / ConnectRight.hhconformation / Conformation.fwd.hh
forge / build / ConnectRight.hhconformation / signals / LengthEvent.fwd.hh
forge / build / ConnectRight.hhid / NamedStubID.hh
forge / build / ConnectRight.hhpose / Pose.hh
forge / build / ConnectRight.hhkinematics / RT.hh
simple_moves / ConsensusDesignMover.ccid / AtomID_Map.hh
simple_moves / ConsensusDesignMover.ccpack / make_symmetric_task.hh
simple_moves / ConsensusDesignMover.ccpack / task / PackerTask.hh
simple_moves / ConsensusDesignMover.ccpack / task / PackerTask_.hh
simple_moves / ConsensusDesignMover.ccpose / Pose.hh
simple_moves / ConsensusDesignMover.ccchemical / ResidueType.hh
simple_moves / ConsensusDesignMover.ccscoring / sasa.hh
simple_moves / ConsensusDesignMover.ccscoring / ScoreFunction.hh
simple_moves / ConsensusDesignMover.ccscoring / ScoreFunctionFactory.hh
simple_moves / ConsensusDesignMover.ccsequence / SequenceProfile.hh
simple_moves / ConsensusDesignMover.ccscoring / constraints / SequenceProfileConstraint.hh
simple_moves / ConsensusDesignMover.ccpack / task / TaskFactory.hh
simple_moves / ConsensusDesignMover.ccpose / symmetry / util.hh
simple_moves / ConsensusDesignMover.hhscoring / constraints / Constraint.fwd.hh
simple_moves / ConsensusDesignMover.hhpack / task / PackerTask.fwd.hh
simple_moves / ConsensusDesignMover.hhpose / Pose.fwd.hh
simple_moves / ConsensusDesignMover.hhscoring / ScoreFunction.fwd.hh
simple_moves / ConsensusDesignMover.hhsequence / SequenceProfile.fwd.hh
simple_moves / ConsensusDesignMover.hhpack / task / TaskFactory.fwd.hh
simple_moves / ConsensusDesignMover.hhtypes.hh
simple_filters / ConservedPosMutationFilter.ccchemical / AA.hh
simple_filters / ConservedPosMutationFilter.ccpose / Pose.hh
simple_filters / ConservedPosMutationFilter.ccchemical / ResidueType.hh
simple_filters / ConservedPosMutationFilter.ccsequence / SequenceProfile.hh
simple_filters / ConservedPosMutationFilter.cctypes.hh
simple_filters / ConservedPosMutationFilter.hhpose / Pose.fwd.hh
topology_broker / weights / ConstAbinitioMoverWeight.hhtypes.hh
topology_broker / ConstraintClaimer.ccscoring / constraints / ConstraintIO.hh
topology_broker / ConstraintClaimer.ccid / Exceptions.hh
topology_broker / ConstraintClaimer.ccpose / Pose.hh
topology_broker / ConstraintClaimer.ccid / SequenceMapping.hh
topology_broker / ConstraintClaimer.cckinematics / ShortestPathInFoldTree.hh
topology_broker / ConstraintClaimer.ccscoring / constraints / util.hh
topology_broker / ConstraintClaimer.hhscoring / constraints / ConstraintSet.hh
topology_broker / ConstraintClaimer.hhpose / Pose.hh
constraints_additional / ConstraintEvaluator.ccscoring / constraints / Constraint.hh
constraints_additional / ConstraintEvaluator.ccscoring / constraints / ConstraintIO.hh
constraints_additional / ConstraintEvaluator.ccscoring / constraints / ConstraintSet.hh
constraints_additional / ConstraintEvaluator.ccid / Exceptions.hh
constraints_additional / ConstraintEvaluator.cckinematics / FoldTree.hh
constraints_additional / ConstraintEvaluator.ccpose / Pose.hh
constraints_additional / ConstraintEvaluator.ccscoring / ScoreFunction.hh
constraints_additional / ConstraintEvaluator.ccscoring / ScoreType.hh
constraints_additional / ConstraintEvaluator.ccid / SequenceMapping.hh
constraints_additional / ConstraintEvaluator.cckinematics / ShortestPathInFoldTree.hh
constraints_additional / ConstraintEvaluator.ccio / silent / SilentStruct.hh
constraints_additional / ConstraintEvaluator.ccscoring / constraints / util.hh
constraints_additional / ConstraintEvaluator.hhscoring / constraints / Constraint.fwd.hh
constraints_additional / ConstraintEvaluator.hhscoring / constraints / ConstraintSet.fwd.hh
constraints_additional / ConstraintEvaluator.hhpose / Pose.fwd.hh
constraints_additional / ConstraintEvaluator.hhio / silent / silent.fwd.hh
constraints_additional / ConstraintEvaluatorCreator.ccio / silent / silent.fwd.hh
constraints_additional / ConstraintEvaluatorCreator.ccio / silent / SilentStruct.hh
constraints_additional / ConstraintEvaluatorCreator.hhtypes.hh
topology_broker / ConstraintEvaluatorWrapper.ccpose / Pose.hh
topology_broker / ConstraintEvaluatorWrapper.ccscoring / ScoreFunction.hh
topology_broker / ConstraintEvaluatorWrapper.ccid / SequenceMapping.hh
topology_broker / ConstraintEvaluatorWrapper.hhpose / Pose.fwd.hh
topology_broker / ConstraintEvaluatorWrapperCreator.ccio / silent / silent.fwd.hh
topology_broker / ConstraintEvaluatorWrapperCreator.ccio / silent / SilentStruct.hh
topology_broker / ConstraintEvaluatorWrapperCreator.hhtypes.hh
forge / constraints / ConstraintFileRCG.ccscoring / constraints / ConstraintIO.hh
forge / constraints / ConstraintFileRCG.ccscoring / constraints / ConstraintSet.hh
forge / constraints / ConstraintFileRCG.ccid / SequenceMapping.hh
forge / constraints / ConstraintFileRCG.hhscoring / constraints / Constraint.fwd.hh
forge / constraints / ConstraintFileRCG.hhpose / Pose.fwd.hh
forge / constraints / ConstraintFileRCG.hhtypes.hh
simple_moves / ConstraintFragmentMover.hhfragment / FragSet.hh
simple_moves / ConstraintFragmentMover.hhkinematics / MoveMap.hh
simple_moves / ConstraintFragmentMover.hhpose / Pose.fwd.hh
simple_moves / ConstraintFragmentMover.hhtypes.hh
abinitio / ConstraintFragmentSampler.ccscoring / constraints / ConstraintSet.hh
abinitio / ConstraintFragmentSampler.ccscoring / Energies.hh
abinitio / ConstraintFragmentSampler.ccscoring / methods / EnergyMethodOptions.hh
abinitio / ConstraintFragmentSampler.ccpose / Pose.hh
abinitio / ConstraintFragmentSampler.ccscoring / ScoreFunction.hh
abinitio / ConstraintFragmentSampler.ccscoring / ScoreType.hh
abinitio / ConstraintFragmentSampler.cckinematics / ShortestPathInFoldTree.hh
abinitio / ConstraintFragmentSampler.cctypes.hh
abinitio / ConstraintFragmentSampler.hhpose / Pose.fwd.hh
abinitio / ConstraintFragmentSampler.hhtypes.hh
simple_moves / ConstrainToIdealMover.ccscoring / constraints / AngleConstraint.hh
simple_moves / ConstrainToIdealMover.ccpose / annotated_sequence.hh
simple_moves / ConstrainToIdealMover.cckinematics / tree / Atom.hh
simple_moves / ConstrainToIdealMover.ccscoring / constraints / AtomPairConstraint.hh
simple_moves / ConstrainToIdealMover.cckinematics / AtomTree.hh
simple_moves / ConstrainToIdealMover.ccchemical / ChemicalManager.hh
simple_moves / ConstrainToIdealMover.ccconformation / Conformation.hh
simple_moves / ConstrainToIdealMover.ccscoring / constraints / ConstraintSet.hh
simple_moves / ConstrainToIdealMover.ccscoring / constraints / HarmonicFunc.hh
simple_moves / ConstrainToIdealMover.cckinematics / MoveMap.hh
simple_moves / ConstrainToIdealMover.ccpose / Pose.hh
simple_moves / ConstrainToIdealMover.ccconformation / Residue.hh
simple_moves / ConstrainToIdealMover.ccscoring / rna / RNA_FittedTorsionInfo.hh
simple_moves / ConstrainToIdealMover.ccscoring / rna / RNA_Util.hh
simple_moves / ConstrainToIdealMover.hhid / AtomID.fwd.hh
simple_moves / ConstrainToIdealMover.hhscoring / constraints / ConstraintSet.fwd.hh
simple_moves / ConstrainToIdealMover.hhkinematics / MoveMap.fwd.hh
simple_moves / ConstrainToIdealMover.hhpose / Pose.fwd.hh
simple_moves / ConstrainToIdealMover.hhconformation / Residue.fwd.hh
simple_filters / ConstraintScoreCutoffFilter.ccscoring / constraints / ConstraintSet.hh
simple_filters / ConstraintScoreCutoffFilter.ccscoring / Energies.hh
simple_filters / ConstraintScoreCutoffFilter.ccscoring / EnergyGraph.hh
simple_filters / ConstraintScoreCutoffFilter.ccscoring / EnergyMap.hh
simple_filters / ConstraintScoreCutoffFilter.ccscoring / LREnergyContainer.hh
simple_filters / ConstraintScoreCutoffFilter.ccpose / Pose.hh
simple_filters / ConstraintScoreCutoffFilter.ccchemical / ResidueType.hh
simple_filters / ConstraintScoreCutoffFilter.ccscoring / ScoreFunction.hh
simple_filters / ConstraintScoreCutoffFilter.ccscoring / ScoreType.hh
simple_filters / ConstraintScoreCutoffFilter.cctypes.hh
simple_filters / ConstraintScoreCutoffFilter.hhscoring / constraints / Constraint.hh
simple_filters / ConstraintScoreCutoffFilter.hhpose / Pose.fwd.hh
simple_filters / ConstraintScoreCutoffFilter.hhscoring / ScoreType.hh
simple_moves / ConstraintSetMover.ccscoring / constraints / ConstraintIO.hh
simple_moves / ConstraintSetMover.ccscoring / constraints / ConstraintSet.hh
simple_moves / ConstraintSetMover.ccpose / Pose.hh
simple_moves / ConstraintSetMover.hhscoring / constraints / ConstraintSet.fwd.hh
frag_picker / scores / ConstScore.hhtypes.hh
frag_picker / Contact.hhtypes.hh
contact_map / ContactMap.ccconformation / Conformation.hh
contact_map / ContactMap.ccpose / Pose.hh
contact_map / ContactMap.ccchemical / ResidueType.hh
contact_map / ContactMap.cctypes.hh
contact_map / ContactMap.ccpose / util.hh
contact_map / ContactMap.hhtypes.hh
simple_filters / ContactMapEvaluator.ccpose / Pose.hh
simple_filters / ContactMapEvaluator.ccconformation / Residue.hh
simple_filters / ContactMapEvaluator.ccio / silent / SilentStruct.hh
simple_filters / ContactMapEvaluator.cctypes.hh
simple_filters / ContactMapEvaluator.hhpose / Pose.hh
simple_filters / ContactMapEvaluator.hhtypes.hh
simple_filters / ContactMapEvaluatorCreator.ccimport_pose / import_pose.hh
simple_filters / ContactMapEvaluatorCreator.ccpose / Pose.hh
simple_filters / ContactMapEvaluatorCreator.ccio / silent / silent.fwd.hh
simple_filters / ContactMapEvaluatorCreator.ccio / silent / SilentStruct.hh
simple_filters / ContactMapEvaluatorCreator.hhtypes.hh
filters / ContingentFilter.ccpose / Pose.fwd.hh
filters / ContingentFilter.cctypes.hh
filters / ContingentFilter.hhpose / Pose.fwd.hh
moves / mc_convergence_checks / ConvergenceCheck.hhpose / Pose.fwd.hh
comparative_modeling / coord_util.ccpose / Pose.hh
comparative_modeling / coord_util.ccconformation / Residue.hh
comparative_modeling / coord_util.ccsequence / SequenceAlignment.hh
comparative_modeling / coord_util.ccid / SequenceMapping.hh
comparative_modeling / coord_util.hhpose / Pose.fwd.hh
comparative_modeling / coord_util.hhsequence / SequenceAlignment.fwd.hh
comparative_modeling / coord_util.hhtypes.hh
topology_broker / CoordConstraintClaimer.ccchemical / ChemicalManager.hh
topology_broker / CoordConstraintClaimer.ccscoring / constraints / ConstraintIO.hh
topology_broker / CoordConstraintClaimer.ccscoring / constraints / CoordinateConstraint.hh
topology_broker / CoordConstraintClaimer.ccscoring / constraints / FuncFactory.hh
topology_broker / CoordConstraintClaimer.ccimport_pose / import_pose.hh
topology_broker / CoordConstraintClaimer.ccscoring / constraints / LocalCoordinateConstraint.hh
topology_broker / CoordConstraintClaimer.ccid / NamedStubID.hh
topology_broker / CoordConstraintClaimer.ccpose / Pose.hh
topology_broker / CoordConstraintClaimer.ccchemical / ResidueType.hh
topology_broker / CoordConstraintClaimer.ccid / SequenceMapping.hh
topology_broker / CoordConstraintClaimer.ccpose / util.hh
topology_broker / CoordConstraintClaimer.hhscoring / constraints / ConstraintSet.hh
topology_broker / CoordConstraintClaimer.hhpose / Pose.hh
seeded_abinitio / CoordinateCst.ccid / AtomID.hh
seeded_abinitio / CoordinateCst.ccscoring / constraints / ConstraintSet.fwd.hh
seeded_abinitio / CoordinateCst.ccscoring / constraints / CoordinateConstraint.hh
seeded_abinitio / CoordinateCst.cckinematics / FoldTree.hh
seeded_abinitio / CoordinateCst.ccscoring / constraints / Func.fwd.hh
seeded_abinitio / CoordinateCst.ccscoring / constraints / Func.hh
seeded_abinitio / CoordinateCst.ccscoring / constraints / HarmonicFunc.hh
seeded_abinitio / CoordinateCst.cckinematics / Jump.hh
seeded_abinitio / CoordinateCst.ccpose / Pose.fwd.hh
seeded_abinitio / CoordinateCst.ccpose / Pose.hh
seeded_abinitio / CoordinateCst.ccconformation / Residue.hh
seeded_abinitio / CoordinateCst.ccpose / selection.hh
seeded_abinitio / CoordinateCst.cctypes.hh
seeded_abinitio / CoordinateCst.hhpose / Pose.fwd.hh
seeded_abinitio / CoordinateCst.hhtypes.hh
fldsgn / filters / CoreDunbrackFilter.ccchemical / AA.hh
fldsgn / filters / CoreDunbrackFilter.ccid / AtomID_Map.hh
fldsgn / filters / CoreDunbrackFilter.ccscoring / Energies.hh
fldsgn / filters / CoreDunbrackFilter.ccpose / Pose.hh
fldsgn / filters / CoreDunbrackFilter.ccconformation / Residue.hh
fldsgn / filters / CoreDunbrackFilter.ccscoring / sasa.hh
fldsgn / filters / CoreDunbrackFilter.ccscoring / ScoreFunction.hh
fldsgn / filters / CoreDunbrackFilter.ccscoring / ScoreFunctionFactory.hh
fldsgn / filters / CoreDunbrackFilter.ccscoring / ScoreType.hh
fldsgn / filters / CoreDunbrackFilter.cctypes.hh
fldsgn / filters / CoreDunbrackFilter.ccpose / util.hh
fldsgn / filters / CoreDunbrackFilter.ccpose / util.tmpl.hh
fldsgn / filters / CoreDunbrackFilter.hhpose / Pose.fwd.hh
fldsgn / filters / CoreDunbrackFilter.hhscoring / ScoreFunction.fwd.hh
noesy_assign / CovalentCompliance.hhid / NamedAtomID.hh
noesy_assign / CovalentCompliance.hhtypes.hh
noesy_assign / CrossPeak.ccchemical / AA.hh
noesy_assign / CrossPeak.ccscoring / constraints / AmbiguousNMRConstraint.hh
noesy_assign / CrossPeak.ccscoring / constraints / AmbiguousNMRDistanceConstraint.hh
noesy_assign / CrossPeak.ccscoring / constraints / BoundConstraint.hh
noesy_assign / CrossPeak.hhchemical / AA.hh
noesy_assign / CrossPeak.hhscoring / constraints / Constraint.fwd.hh
noesy_assign / CrossPeak.hhid / NamedAtomID.fwd.hh
noesy_assign / CrossPeak.hhpose / Pose.fwd.hh
noesy_assign / CrossPeak.hhtypes.hh
noesy_assign / CrossPeakInfo.hhchemical / AA.hh
noesy_assign / CrossPeakInfo.hhtypes.hh
noesy_assign / CrossPeakList.ccchemical / ChemicalManager.fwd.hh
noesy_assign / CrossPeakList.ccscoring / constraints / ConstraintSet.hh
noesy_assign / CrossPeakList.ccid / Exceptions.hh
noesy_assign / CrossPeakList.cckinematics / Jump.hh
noesy_assign / CrossPeakList.ccpose / Pose.hh
noesy_assign / CrossPeakList.ccconformation / Residue.hh
noesy_assign / CrossPeakList.ccchemical / ResidueType.hh
noesy_assign / CrossPeakList.ccutil / SwitchResidueTypeSet.hh
noesy_assign / CrossPeakList.hhscoring / constraints / ConstraintSet.fwd.hh
noesy_assign / CrossPeakList.hhpose / Pose.fwd.hh
noesy_assign / CrossPeakList.hhtypes.hh
noesy_assign / CrossPeakList.impl.hhchemical / AA.hh
noesy_assign / CrossPeakList.impl.hhpose / Pose.hh
noesy_assign / CrossPeakList.impl.hhtypes.hh
frag_picker / CS2ndShift.ccio / raw_data / DisulfideFile.hh
frag_picker / CS2ndShift.cctypes.hh
frag_picker / CS2ndShift.hhtypes.hh
frag_picker / scores / CSScore.hhtypes.hh
relax / cst_util.ccid / AtomID.hh
relax / cst_util.ccscoring / constraints / AtomPairConstraint.hh
relax / cst_util.ccconformation / Conformation.hh
relax / cst_util.ccscoring / constraints / ConstraintSet.fwd.hh
relax / cst_util.ccscoring / constraints / ConstraintSet.hh
relax / cst_util.ccscoring / constraints / CoordinateConstraint.hh
relax / cst_util.ccscoring / Energies.hh
relax / cst_util.ccscoring / EnergyMap.hh
relax / cst_util.ccscoring / constraints / HarmonicFunc.hh
relax / cst_util.ccpose / Pose.hh
relax / cst_util.ccconformation / Residue.hh
relax / cst_util.ccconformation / ResidueFactory.hh
relax / cst_util.ccchemical / ResidueTypeSet.hh
relax / cst_util.ccsequence / SequenceAlignment.hh
relax / cst_util.ccid / SequenceMapping.hh
relax / cst_util.cctypes.hh
relax / cst_util.hhscoring / constraints / ConstraintSet.fwd.hh
relax / cst_util.hhpose / Pose.fwd.hh
relax / cst_util.hhscoring / ScoreType.hh
relax / cst_util.hhsequence / SequenceAlignment.fwd.hh
relax / cst_util.hhtypes.hh
frag_picker / CSTalosIO.cctypes.hh
frag_picker / CSTalosIO.hhtypes.hh
frag_picker / CustomScoreSelector.cctypes.hh
frag_picker / CustomScoreSelector.hhtypes.hh
topology_broker / CutBiasClaimer.ccfragment / SecondaryStructure.hh
topology_broker / CutBiasClaimer.hhfragment / SecondaryStructure.fwd.hh
simple_moves / CutChainMover.ccpose / datacache / CacheableDataType.hh
simple_moves / CutChainMover.ccpose / datacache / CacheableObserverType.hh
simple_moves / CutChainMover.ccconformation / Conformation.hh
simple_moves / CutChainMover.ccscoring / Energies.hh
simple_moves / CutChainMover.ccpose / datacache / ObserverCache.hh
simple_moves / CutChainMover.ccpack / task / PackerTask.hh
simple_moves / CutChainMover.ccpose / PDBInfo.hh
simple_moves / CutChainMover.ccpose / Pose.hh
simple_moves / CutChainMover.ccconformation / Residue.hh
simple_moves / CutChainMover.ccchemical / ResidueType.hh
simple_moves / CutChainMover.ccscoring / ScoreFunction.hh
simple_moves / CutChainMover.ccpose / selection.hh
simple_moves / CutChainMover.ccpack / task / TaskFactory.hh
simple_moves / CutChainMover.ccpack / task / operation / TaskOperations.hh
simple_moves / CutChainMover.ccid / TorsionID.hh
simple_moves / CutChainMover.ccid / types.hh
simple_moves / CutChainMover.cctypes.hh
simple_moves / CutChainMover.ccpose / carbohydrates / util.hh
simple_moves / CutChainMover.ccpose / util.hh
simple_moves / CutChainMover.hhpose / Pose.fwd.hh
noesy_assign / CyanaModule.ccchemical / ChemicalManager.fwd.hh
noesy_assign / CyanaModule.ccscoring / constraints / ConstraintSet.hh
noesy_assign / CyanaModule.ccpose / Pose.hh
noesy_assign / CyanaModule.hhtypes.hh
moves / CyclicMover.hhpose / Pose.fwd.hh
pockets / DarcElectrostatics.ccid / AtomID_Map.hh
pockets / DarcElectrostatics.ccchemical / AtomType.hh
pockets / DarcElectrostatics.ccconformation / Conformation.hh
pockets / DarcElectrostatics.ccpose / Pose.hh
pockets / DarcElectrostatics.ccconformation / Residue.hh
pockets / DarcElectrostatics.cctypes.hh
pockets / DarcElectrostatics.hhpose / Pose.hh
pockets / DarcElectrostatics.hhtypes.hh
pockets / DarcParticleSwarmMinimizer.ccid / AtomID_Map.hh
pockets / DarcParticleSwarmMinimizer.ccchemical / AtomType.hh
pockets / DarcParticleSwarmMinimizer.ccconformation / Conformation.hh
pockets / DarcParticleSwarmMinimizer.ccoptimization / ParticleSwarmMinimizer.hh
pockets / DarcParticleSwarmMinimizer.ccpose / Pose.hh
pockets / DarcParticleSwarmMinimizer.ccconformation / Residue.hh
pockets / DarcParticleSwarmMinimizer.hhoptimization / Multifunc.hh
pockets / DarcParticleSwarmMinimizer.hhoptimization / ParticleSwarmMinimizer.hh
pockets / DarcParticleSwarmMinimizer.hhconformation / Residue.hh
pockets / DarcParticleSwarmMinimizer.hhoptimization / types.hh
features / DatabaseFilters.ccscoring / Energies.hh
features / DatabaseFilters.ccpose / Pose.hh
features / DatabaseFilters.ccscoring / ScoreFunction.hh
features / DatabaseFilters.ccscoring / ScoreFunctionFactory.hh
features / DatabaseFilters.cctypes.hh
features / DatabaseFilters.hhpose / Pose.fwd.hh
features / DatabaseFilters.hhtypes.hh
features / DatabaseJobInputter.cckinematics / Jump.hh
features / DatabaseJobInputter.ccpose / Pose.hh
features / DatabaseJobInputter.ccconformation / Residue.hh
features / DatabaseJobInputter.ccscoring / ScoreFunction.hh
features / DatabaseJobInputter.ccpose / symmetry / util.hh
features / DatabaseJobInputter.ccpose / util.hh
features / DatabaseJobInputter.hhpose / Pose.fwd.hh
features / DatabaseJobInputter.hhscoring / ScoreFunction.fwd.hh
features / DatabaseJobOutputter.ccscoring / ScoreFunction.fwd.hh
features / DatabaseJobOutputter.ccpose / util.hh
features / DatabaseJobOutputter.hhpose / Pose.fwd.hh
features / DatabaseJobOutputter.hhtypes.hh
wum / DatabaseQueryWorkUnitManager.hhtypes.hh
features / DatabaseStatements.hhtypes.hh
jd2 / parser / DataLoader.hhpose / Pose.fwd.hh
jd2 / parser / DataLoaderCreator.hhtypes.hh
moves / DataMap.hhtypes.hh
simple_moves / ddG.ccpose / datacache / CacheableDataType.hh
simple_moves / ddG.ccscoring / Energies.hh
simple_moves / ddG.ccscoring / methods / EnergyMethodOptions.hh
simple_moves / ddG.ccscoring / hbonds / HBondOptions.hh
simple_moves / ddG.ccpack / task / operation / NoRepackDisulfides.hh
simple_moves / ddG.ccpack / pack_rotamers.hh
simple_moves / ddG.ccpack / task / PackerTask.hh
simple_moves / ddG.ccscoring / methods / PoissonBoltzmannEnergy.hh
simple_moves / ddG.ccpose / Pose.hh
simple_moves / ddG.ccscoring / ScoreFunction.hh
simple_moves / ddG.ccconformation / symmetry / SymmetricConformation.hh
simple_moves / ddG.ccscoring / symmetry / SymmetricScoreFunction.hh
simple_moves / ddG.ccconformation / symmetry / SymmetryInfo.hh
simple_moves / ddG.ccpack / task / TaskFactory.hh
simple_moves / ddG.ccpack / task / operation / TaskOperations.hh
simple_moves / ddG.cctypes.hh
simple_moves / ddG.ccpose / symmetry / util.hh
simple_moves / ddG.ccpose / util.hh
simple_moves / ddG.hhscoring / methods / PoissonBoltzmannEnergy.hh
simple_moves / ddG.hhpose / Pose.fwd.hh
simple_moves / ddG.hhscoring / ScoreType.hh
simple_moves / ddG.hhpack / task / TaskFactory.hh
simple_moves / ddG.hhtypes.hh
ddg / ddG_main.ccchemical / AA.hh
ddg / ddG_main.ccimport_pose / import_pose.hh
ddg / ddG_main.ccpack / task / PackerTask.hh
ddg / ddG_main.ccpose / Pose.hh
ddg / ddG_main.ccpack / task / ResfileReader.hh
ddg / ddG_main.ccconformation / Residue.hh
ddg / ddG_main.ccscoring / ScoreFunction.hh
ddg / ddG_main.ccscoring / ScoreFunctionFactory.hh
ddg / ddG_main.ccpack / task / TaskFactory.hh
ddg / ddG_main.cctypes.hh
ddg / ddGData.ccchemical / AA.hh
ddg / ddGData.ccchemical / ChemicalManager.hh
ddg / ddGData.ccimport_pose / import_pose.hh
ddg / ddGData.ccpose / Pose.hh
ddg / ddGData.ccio / silent / SilentFileData.hh
ddg / ddGData.ccio / silent / SilentStruct.hh
ddg / ddGData.cctypes.hh
ddg / ddGData.hhchemical / AA.hh
ddg / ddGData.hhpose / Pose.fwd.hh
ddg / ddGData.hhscoring / ScoreFunction.fwd.hh
ddg / ddGData.hhtypes.hh
simple_filters / DdgFilter.ccchemical / ChemicalManager.fwd.hh
simple_filters / DdgFilter.ccconformation / Conformation.hh
simple_filters / DdgFilter.ccscoring / Energies.hh
simple_filters / DdgFilter.cckinematics / FoldTree.hh
simple_filters / DdgFilter.ccpose / PDBInfo.hh
simple_filters / DdgFilter.ccpose / Pose.hh
simple_filters / DdgFilter.ccutil / SwitchResidueTypeSet.hh
simple_filters / DdgFilter.ccpose / util.hh
simple_filters / DdgFilter.hhpose / Pose.fwd.hh
simple_filters / DdgFilter.hhscoring / ScoreFunction.hh
simple_filters / DdgFilter.hhscoring / ScoreType.hh
simple_filters / DdgFilter.hhpack / task / TaskFactory.hh
ddg / ddGMover.ccchemical / AA.hh
ddg / ddGMover.ccid / AtomID.hh
ddg / ddGMover.ccscoring / constraints / AtomPairConstraint.hh
ddg / ddGMover.ccoptimization / AtomTreeMinimizer.hh
ddg / ddGMover.ccio / silent / BinaryProteinSilentStruct.hh
ddg / ddGMover.ccscoring / constraints / Constraint.hh
ddg / ddGMover.ccscoring / constraints / ConstraintIO.hh
ddg / ddGMover.ccscoring / constraints / ConstraintSet.fwd.hh
ddg / ddGMover.ccscoring / constraints / ConstraintSet.hh
ddg / ddGMover.ccid / DOF_ID.hh
ddg / ddGMover.ccscoring / Energies.hh
ddg / ddGMover.ccscoring / constraints / Func.hh
ddg / ddGMover.ccscoring / constraints / HarmonicFunc.hh
ddg / ddGMover.ccoptimization / MinimizerOptions.hh
ddg / ddGMover.cckinematics / MoveMap.hh
ddg / ddGMover.ccpack / pack_rotamers.hh
ddg / ddGMover.ccpack / task / PackerTask.hh
ddg / ddGMover.ccpose / Pose.fwd.hh
ddg / ddGMover.ccpose / Pose.hh
ddg / ddGMover.ccconformation / Residue.hh
ddg / ddGMover.ccchemical / ResidueTypeSet.hh
ddg / ddGMover.ccscoring / ScoreFunction.hh
ddg / ddGMover.ccio / silent / SilentFileData.hh
ddg / ddGMover.ccpack / task / TaskFactory.hh
ddg / ddGMover.cctypes.hh
ddg / ddGMover.hhchemical / AA.hh
ddg / ddGMover.hhscoring / constraints / ConstraintSet.fwd.hh
ddg / ddGMover.hhpack / task / PackerTask.fwd.hh
ddg / ddGMover.hhscoring / ScoreFunction.fwd.hh
hybridization / DDomainParse.ccscoring / constraints / AtomPairConstraint.hh
hybridization / DDomainParse.ccscoring / constraints / Constraint.hh
hybridization / DDomainParse.ccscoring / constraints / ConstraintIO.hh
hybridization / DDomainParse.ccscoring / constraints / ConstraintSet.hh
hybridization / DDomainParse.cckinematics / Edge.hh
hybridization / DDomainParse.cckinematics / FoldTree.hh
hybridization / DDomainParse.cckinematics / Jump.hh
hybridization / DDomainParse.ccpack / task / PackerTask.hh
hybridization / DDomainParse.ccpose / PDBInfo.hh
hybridization / DDomainParse.ccpose / Pose.hh
hybridization / DDomainParse.ccconformation / Residue.hh
hybridization / DDomainParse.ccchemical / ResidueType.hh
hybridization / DDomainParse.ccscoring / constraints / ScalarWeightedFunc.hh
hybridization / DDomainParse.ccscoring / constraints / SOGFunc.hh
hybridization / DDomainParse.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
hybridization / DDomainParse.ccconformation / symmetry / SymmetricConformation.hh
hybridization / DDomainParse.ccconformation / symmetry / SymmetryInfo.hh
hybridization / DDomainParse.cctypes.hh
hybridization / DDomainParse.ccpose / symmetry / util.hh
hybridization / DDomainParse.ccscoring / constraints / util.hh
hybridization / DDomainParse.hhkinematics / Edge.hh
hybridization / DDomainParse.hhkinematics / FoldTree.hh
hybridization / DDomainParse.hhkinematics / Jump.hh
hybridization / DDomainParse.hhpose / Pose.hh
hybridization / DDomainParse.hhconformation / Residue.hh
hybridization / DDomainParse.hhchemical / ResidueType.hh
hybridization / DDomainParse.hhtypes.hh
toolbox / pose_metric_calculators / DecomposeAndReweightEnergiesCalculator.ccpose / metrics / CalculatorFactory.hh
toolbox / pose_metric_calculators / DecomposeAndReweightEnergiesCalculator.ccscoring / Energies.hh
toolbox / pose_metric_calculators / DecomposeAndReweightEnergiesCalculator.ccscoring / EnergyGraph.hh
toolbox / pose_metric_calculators / DecomposeAndReweightEnergiesCalculator.ccscoring / LREnergyContainer.hh
toolbox / pose_metric_calculators / DecomposeAndReweightEnergiesCalculator.ccscoring / methods / Methods.hh
toolbox / pose_metric_calculators / DecomposeAndReweightEnergiesCalculator.ccpose / Pose.hh
toolbox / pose_metric_calculators / DecomposeAndReweightEnergiesCalculator.ccscoring / ScoreType.hh
toolbox / pose_metric_calculators / DecomposeAndReweightEnergiesCalculator.hhscoring / EnergyMap.fwd.hh
toolbox / pose_metric_calculators / DecomposeAndReweightEnergiesCalculator.hhscoring / EnergyMap.hh
toolbox / pose_metric_calculators / DecomposeAndReweightEnergiesCalculator.hhpose / Pose.fwd.hh
toolbox / pose_metric_calculators / DecomposeAndReweightEnergiesCalculator.hhpose / metrics / PoseMetricCalculatorBase.hh
toolbox / pose_metric_calculators / DecomposeAndReweightEnergiesCalculator.hhtypes.hh
toolbox / pose_metric_calculators / DecomposeAndReweightEnergiesCalculator.hhgraph / UpperEdgeGraph.hh
toolbox / DecoySetEvaluation.ccscoring / constraints / BoundConstraint.hh
toolbox / DecoySetEvaluation.ccscoring / constraints / ConstraintSet.hh
toolbox / DecoySetEvaluation.ccscoring / constraints / LocalCoordinateConstraint.hh
toolbox / DecoySetEvaluation.ccscoring / constraints / NamedAtomPairConstraint.hh
toolbox / DecoySetEvaluation.ccid / NamedStubID.hh
toolbox / DecoySetEvaluation.ccpose / Pose.hh
toolbox / DecoySetEvaluation.ccconformation / Residue.hh
toolbox / DecoySetEvaluation.ccio / silent / SilentFileData.hh
toolbox / DecoySetEvaluation.cctypes.hh
toolbox / DecoySetEvaluation.ccpose / util.hh
toolbox / DecoySetEvaluation.hhscoring / constraints / ConstraintSet.fwd.hh
toolbox / DecoySetEvaluation.hhpose / Pose.hh
toolbox / DecoySetEvaluation.hhio / silent / SilentFileData.fwd.hh
toolbox / DecoySetEvaluation.hhtypes.hh
toolbox / DecoySetEvaluation.impl.hhpose / Pose.hh
toolbox / DecoySetEvaluation.impl.hhconformation / Residue.hh
toolbox / DecoySetEvaluation.impl.hhtypes.hh
seeded_abinitio / DefineMovableLoops.ccconformation / Conformation.hh
seeded_abinitio / DefineMovableLoops.ccscoring / dssp / Dssp.hh
seeded_abinitio / DefineMovableLoops.cckinematics / FoldTree.hh
seeded_abinitio / DefineMovableLoops.ccimport_pose / import_pose.hh
seeded_abinitio / DefineMovableLoops.ccpose / Pose.fwd.hh
seeded_abinitio / DefineMovableLoops.ccpose / Pose.hh
seeded_abinitio / DefineMovableLoops.cctypes.hh
seeded_abinitio / DefineMovableLoops.ccpose / util.hh
seeded_abinitio / DefineMovableLoops.ccchemical / VariantType.hh
seeded_abinitio / DefineMovableLoops.hhkinematics / FoldTree.fwd.hh
seeded_abinitio / DefineMovableLoops.hhpose / Pose.hh
simple_filters / DeltaFilter.ccimport_pose / import_pose.hh
simple_filters / DeltaFilter.ccpose / Pose.hh
simple_filters / DeltaFilter.ccscoring / ScoreFunction.hh
simple_filters / DeltaFilter.hhpose / Pose.fwd.hh
topology_broker / DensityScoringClaimer.hhkinematics / Jump.hh
topology_broker / DensityScoringClaimer.hhkinematics / MoveMap.hh
topology_broker / DensityScoringClaimer.hhpose / Pose.fwd.hh
protein_interface_design / design_utils.ccchemical / AA.hh
protein_interface_design / design_utils.ccoptimization / AtomTreeMinimizer.hh
protein_interface_design / design_utils.ccconformation / Conformation.hh
protein_interface_design / design_utils.ccscoring / Energies.hh
protein_interface_design / design_utils.ccscoring / methods / EnergyMethodOptions.hh
protein_interface_design / design_utils.cckinematics / FoldTree.hh
protein_interface_design / design_utils.ccscoring / hbonds / HBondDatabase.hh
protein_interface_design / design_utils.ccscoring / hbonds / HBondOptions.hh
protein_interface_design / design_utils.ccscoring / hbonds / hbonds.hh
protein_interface_design / design_utils.ccscoring / hbonds / HBondSet.hh
protein_interface_design / design_utils.ccoptimization / MinimizerOptions.hh
protein_interface_design / design_utils.cckinematics / MoveMap.hh
protein_interface_design / design_utils.ccscoring / constraints / NonResidueTypeConstraint.hh
protein_interface_design / design_utils.ccpack / pack_rotamers.hh
protein_interface_design / design_utils.ccpack / task / PackerTask.hh
protein_interface_design / design_utils.ccpose / Pose.hh
protein_interface_design / design_utils.ccscoring / constraints / ResidueTypeConstraint.hh
protein_interface_design / design_utils.ccscoring / ScoreFunction.hh
protein_interface_design / design_utils.ccscoring / ScoreFunctionFactory.hh
protein_interface_design / design_utils.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
protein_interface_design / design_utils.ccpack / task / TaskFactory.hh
protein_interface_design / design_utils.cctypes.hh
protein_interface_design / design_utils.ccpose / symmetry / util.hh
protein_interface_design / design_utils.hhpose / Pose.fwd.hh
protein_interface_design / design_utils.hhscoring / ScoreFunction.hh
protein_interface_design / design_utils.hhtypes.hh
sic_dock / designability_score.ccscoring / dssp / Dssp.hh
sic_dock / designability_score.ccpose / Pose.hh
sic_dock / designability_score.ccconformation / Residue.hh
sic_dock / designability_score.cckinematics / Stub.hh
sic_dock / designability_score.hhpose / Pose.fwd.hh
sic_dock / designability_score.hhkinematics / Stub.fwd.hh
sic_dock / designability_score.hhtypes.hh
protein_interface_design / filters / DesignableResiduesFilter.ccpack / task / PackerTask.hh
protein_interface_design / filters / DesignableResiduesFilter.ccpose / PDBInfo.hh
protein_interface_design / filters / DesignableResiduesFilter.ccpose / Pose.hh
protein_interface_design / filters / DesignableResiduesFilter.ccconformation / Residue.hh
protein_interface_design / filters / DesignableResiduesFilter.ccconformation / symmetry / SymmetryInfo.hh
protein_interface_design / filters / DesignableResiduesFilter.ccpack / task / TaskFactory.hh
protein_interface_design / filters / DesignableResiduesFilter.ccpose / symmetry / util.hh
protein_interface_design / filters / DesignableResiduesFilter.ccconformation / symmetry / util.hh
protein_interface_design / filters / DesignableResiduesFilter.hhpose / Pose.fwd.hh
protein_interface_design / filters / DesignableResiduesFilter.hhpack / task / TaskFactory.fwd.hh
toolbox / task_operations / DesignAroundOperation.ccconformation / Conformation.hh
toolbox / task_operations / DesignAroundOperation.ccpack / task / operation / OperateOnCertainResidues.hh
toolbox / task_operations / DesignAroundOperation.ccpose / Pose.hh
toolbox / task_operations / DesignAroundOperation.ccpack / task / operation / ResLvlTaskOperations.hh
toolbox / task_operations / DesignAroundOperation.ccpose / selection.hh
toolbox / task_operations / DesignAroundOperation.cctypes.hh
toolbox / task_operations / DesignAroundOperation.hhpack / task / PackerTask.fwd.hh
toolbox / task_operations / DesignAroundOperation.hhpose / Pose.fwd.hh
toolbox / task_operations / DesignAroundOperation.hhtypes.hh
toolbox / task_operations / DesignAroundOperationCreator.hhpack / task / operation / TaskOperationCreator.hh
protein_interface_design / movers / DesignMinimizeHbonds.cckinematics / FoldTree.hh
protein_interface_design / movers / DesignMinimizeHbonds.ccpack / pack_rotamers.hh
protein_interface_design / movers / DesignMinimizeHbonds.ccpack / task / PackerTask.hh
protein_interface_design / movers / DesignMinimizeHbonds.ccpose / Pose.hh
protein_interface_design / movers / DesignMinimizeHbonds.ccconformation / Residue.hh
protein_interface_design / movers / DesignMinimizeHbonds.ccpack / task / TaskFactory.hh
protein_interface_design / movers / DesignMinimizeHbonds.hhpose / Pose.fwd.hh
protein_interface_design / movers / DesignMinimizeHbonds.hhtypes.hh
dna / DesignProteinBackboneAroundDNA.ccscoring / methods / EnergyMethodOptions.hh
dna / DesignProteinBackboneAroundDNA.cckinematics / FoldTree.hh
dna / DesignProteinBackboneAroundDNA.ccpack / task / operation / OperateOnCertainResidues.hh
dna / DesignProteinBackboneAroundDNA.ccpack / pack_rotamers.hh
dna / DesignProteinBackboneAroundDNA.ccpack / task / PackerTask.hh
dna / DesignProteinBackboneAroundDNA.ccpose / PDBInfo.hh
dna / DesignProteinBackboneAroundDNA.ccpose / Pose.hh
dna / DesignProteinBackboneAroundDNA.ccpack / task / operation / ResFilters.hh
dna / DesignProteinBackboneAroundDNA.ccchemical / ResidueType.hh
dna / DesignProteinBackboneAroundDNA.ccpack / task / operation / ResLvlTaskOperations.hh
dna / DesignProteinBackboneAroundDNA.ccscoring / ScoreFunction.hh
dna / DesignProteinBackboneAroundDNA.ccpack / task / TaskFactory.hh
dna / DesignProteinBackboneAroundDNA.ccpack / task / operation / TaskOperations.hh
simple_moves / DesignRepackMover.ccconformation / Conformation.hh
simple_moves / DesignRepackMover.cckinematics / FoldTree.hh
simple_moves / DesignRepackMover.ccpack / make_symmetric_task.hh
simple_moves / DesignRepackMover.ccpack / task / PackerTask.hh
simple_moves / DesignRepackMover.ccpose / Pose.hh
simple_moves / DesignRepackMover.ccpack / task / ResfileReader.hh
simple_moves / DesignRepackMover.ccchemical / ResidueType.hh
simple_moves / DesignRepackMover.ccscoring / ScoreFunction.hh
simple_moves / DesignRepackMover.ccscoring / ScoreType.hh
simple_moves / DesignRepackMover.ccpose / selection.hh
simple_moves / DesignRepackMover.ccscoring / symmetry / SymmetricScoreFunction.hh
simple_moves / DesignRepackMover.ccpack / task / TaskFactory.hh
simple_moves / DesignRepackMover.ccpack / task / operation / TaskOperations.hh
simple_moves / DesignRepackMover.cctypes.hh
simple_moves / DesignRepackMover.hhpack / task / PackerTask.fwd.hh
simple_moves / DesignRepackMover.hhpose / Pose.fwd.hh
simple_moves / DesignRepackMover.hhscoring / ScoreFunction.fwd.hh
simple_moves / DesignRepackMover.hhpack / task / TaskFactory.fwd.hh
simple_moves / DesignRepackMover.hhtypes.hh
flxbb / DesignTask.ccchemical / AA.hh
flxbb / DesignTask.ccpack / task / PackerTask.hh
flxbb / DesignTask.ccscoring / ScoreFunction.hh
flxbb / DesignTask.ccpack / task / operation / TaskOperation.hh
flxbb / DesignTask.ccpack / task / operation / TaskOperations.hh
flxbb / DesignTask.hhchemical / AA.hh
flxbb / DesignTask.hhpack / task / PackerTask.fwd.hh
flxbb / DesignTask.hhpose / Pose.fwd.hh
flxbb / DesignTask.hhscoring / ScoreFunction.fwd.hh
flxbb / DesignTask.hhpack / task / operation / TaskOperation.fwd.hh
flxbb / DesignTask.hhtypes.hh
enzdes / DesignVsNativeComparison.ccscoring / constraints / ConstraintSet.hh
enzdes / DesignVsNativeComparison.ccscoring / Energies.hh
enzdes / DesignVsNativeComparison.ccimport_pose / import_pose.hh
enzdes / DesignVsNativeComparison.ccpose / Pose.hh
enzdes / DesignVsNativeComparison.ccscoring / ScoreFunction.hh
enzdes / DesignVsNativeComparison.hhpose / Pose.fwd.hh
enzdes / DesignVsNativeComparison.hhscoring / ScoreFunction.fwd.hh
enzdes / DesignVsNativeComparison.hhio / silent / SilentEnergy.hh
enzdes / DetectProteinLigandInterfaceOperationCreator.hhpack / task / operation / TaskOperationCreator.hh
simple_moves / symmetry / DetectSymmetryMover.ccpose / Pose.hh
simple_moves / symmetry / DetectSymmetryMover.ccscoring / rms_util.hh
simple_moves / symmetry / DetectSymmetryMover.ccconformation / symmetry / SymmData.hh
simple_moves / symmetry / DetectSymmetryMover.ccpose / symmetry / util.hh
simple_moves / symmetry / DetectSymmetryMover.hhpose / Pose.fwd.hh
frag_picker / scores / DihedralConstraintsScore.ccscoring / constraints / Func.hh
frag_picker / scores / DihedralConstraintsScore.ccscoring / constraints / FuncFactory.hh
frag_picker / scores / DihedralConstraintsScore.ccscoring / constraints / PeriodicFunc.hh
frag_picker / scores / DihedralConstraintsScore.hhscoring / constraints / FuncFactory.hh
fldsgn / topology / DimerPairing.hhtypes.hh
noesy_assign / DistanceScoreMover.ccscoring / constraints / AmbiguousNMRDistanceConstraint.hh
noesy_assign / DistanceScoreMover.ccid / Exceptions.hh
noesy_assign / DistanceScoreMover.hhpose / Pose.fwd.hh
noesy_assign / DistanceScoreMover.hhtypes.hh
frag_picker / scores / DisulfideDistance.ccio / raw_data / DisulfideFile.hh
frag_picker / scores / DisulfideDistance.hhtypes.hh
protein_interface_design / filters / DisulfideFilter.ccscoring / disulfides / CentroidDisulfidePotential.hh
protein_interface_design / filters / DisulfideFilter.ccpose / selection.hh
protein_interface_design / filters / DisulfideFilter.cctypes.hh
protein_interface_design / filters / DisulfideFilter.hhscoring / disulfides / CentroidDisulfidePotential.fwd.hh
protein_interface_design / filters / DisulfideFilter.hhpose / Pose.fwd.hh
protein_interface_design / filters / DisulfideFilter.hhtypes.hh
frag_picker / scores / DisulfideIdentity.cctypes.hh
frag_picker / scores / DisulfideIdentity.hhtypes.hh
protein_interface_design / movers / DisulfideMover.ccscoring / disulfides / CentroidDisulfidePotential.hh
protein_interface_design / movers / DisulfideMover.ccchemical / ChemicalManager.hh
protein_interface_design / movers / DisulfideMover.ccconformation / Conformation.hh
protein_interface_design / movers / DisulfideMover.ccutil / disulfide_util.hh
protein_interface_design / movers / DisulfideMover.ccscoring / Energies.hh
protein_interface_design / movers / DisulfideMover.cckinematics / MoveMap.hh
protein_interface_design / movers / DisulfideMover.ccpack / task / PackerTask.hh
protein_interface_design / movers / DisulfideMover.ccpose / Pose.hh
protein_interface_design / movers / DisulfideMover.ccconformation / Residue.hh
protein_interface_design / movers / DisulfideMover.ccchemical / ResidueTypeSet.hh
protein_interface_design / movers / DisulfideMover.ccscoring / ScoreFunction.hh
protein_interface_design / movers / DisulfideMover.ccpose / selection.hh
protein_interface_design / movers / DisulfideMover.ccpack / task / TaskFactory.hh
protein_interface_design / movers / DisulfideMover.cctypes.hh
protein_interface_design / movers / DisulfideMover.hhscoring / disulfides / CentroidDisulfidePotential.fwd.hh
protein_interface_design / movers / DisulfideMover.hhpose / Pose.fwd.hh
protein_interface_design / movers / DisulfideMover.hhtypes.hh
topology_broker / DisulfJumpClaimer.ccfragment / FragData.fwd.hh
topology_broker / DisulfJumpClaimer.ccfragment / FragSet.hh
topology_broker / DisulfJumpClaimer.ccfragment / FrameList.hh
topology_broker / DisulfJumpClaimer.ccfragment / JumpingFrame.hh
topology_broker / DisulfJumpClaimer.cckinematics / MoveMap.hh
topology_broker / DisulfJumpClaimer.ccfragment / OrderedFragSet.hh
topology_broker / DisulfJumpClaimer.ccpose / Pose.hh
topology_broker / DisulfJumpClaimer.hhfragment / Frame.hh
topology_broker / DisulfJumpClaimer.hhfragment / FrameList.hh
topology_broker / DisulfJumpClaimer.hhkinematics / MoveMap.hh
topology_broker / DisulfJumpClaimer.hhpose / Pose.fwd.hh
jumping / DisulfPairingLibrary.ccfragment / BBTorsionSRFD.hh
jumping / DisulfPairingLibrary.ccfragment / FragData.hh
jumping / DisulfPairingLibrary.ccfragment / FragSet.hh
jumping / DisulfPairingLibrary.cckinematics / Jump.hh
jumping / DisulfPairingLibrary.ccfragment / JumpingFrame.hh
jumping / DisulfPairingLibrary.ccfragment / JumpSRFD.hh
jumping / DisulfPairingLibrary.cckinematics / MoveMap.hh
jumping / DisulfPairingLibrary.ccfragment / SingleResidueFragData.fwd.hh
jumping / DisulfPairingLibrary.cckinematics / Stub.hh
jumping / DisulfPairingLibrary.cctypes.hh
jumping / DisulfPairingLibrary.hhfragment / FragData.fwd.hh
jumping / DisulfPairingLibrary.hhfragment / FragSet.fwd.hh
jumping / DisulfPairingLibrary.hhkinematics / MoveMap.fwd.hh
jumping / DisulfPairingLibrary.hhkinematics / RT.hh
jumping / DisulfPairingLibrary.hhtypes.hh
jumping / DisulfPairingsList.hhtypes.hh
frag_picker / DiversifyCrmsdByClustering.ccid / NamedAtomID.hh
frag_picker / DiversifyCrmsdByClustering.ccpose / Pose.hh
frag_picker / DiversifyCrmsdByClustering.hhtypes.hh
frag_picker / DiversifyCrmsdSelector.ccid / NamedAtomID.hh
frag_picker / DiversifyCrmsdSelector.ccpose / Pose.hh
frag_picker / DiversifyCrmsdSelector.hhtypes.hh
frag_picker / DiversifyDihedralsSelector.hhtypes.hh
simple_moves / DME_FilterMover.ccconformation / find_neighbors.hh
simple_moves / DME_FilterMover.ccconformation / PointGraph.hh
simple_moves / DME_FilterMover.ccconformation / PointGraphData.hh
simple_moves / DME_FilterMover.ccpose / Pose.hh
simple_moves / DME_FilterMover.ccconformation / Residue.hh
simple_moves / DME_FilterMover.ccgraph / UpperEdgeGraph.hh
simple_moves / DME_FilterMover.hhpose / Pose.fwd.hh
simple_moves / DME_FilterMover.hhtypes.hh
dna / DnaChains.ccpose / PDBInfo.hh
dna / DnaChains.ccpose / Pose.hh
dna / DnaChains.ccchemical / ResidueType.hh
dna / DnaChains.hhpose / Pose.fwd.hh
dna / DnaChains.hhtypes.hh
dna / DnaDesignDef.cctypes.hh
dna / DnaInterfaceFinder.ccpose / Pose.hh
dna / DnaInterfaceFinder.ccchemical / ResidueType.hh
dna / DnaInterfaceFinder.hhpose / Pose.fwd.hh
dna / DnaInterfaceFinder.hhtypes.hh
dna / DnaInterfaceMinMover.ccoptimization / AtomTreeMinimizer.hh
dna / DnaInterfaceMinMover.ccoptimization / MinimizerOptions.hh
dna / DnaInterfaceMinMover.cckinematics / MoveMap.hh
dna / DnaInterfaceMinMover.ccscoring / ScoreFunction.hh
dna / DnaInterfaceMinMover.ccscoring / ScoreFunctionFactory.hh
dna / DnaInterfaceMinMover.hhpose / Pose.fwd.hh
dna / DnaInterfaceMultiStateDesign.ccpack / task / PackerTask.hh
dna / DnaInterfaceMultiStateDesign.ccpose / PDBInfo.hh
dna / DnaInterfaceMultiStateDesign.ccpose / Pose.hh
dna / DnaInterfaceMultiStateDesign.ccconformation / Residue.hh
dna / DnaInterfaceMultiStateDesign.ccchemical / ResidueSelector.hh
dna / DnaInterfaceMultiStateDesign.ccchemical / ResidueTypeSet.hh
dna / DnaInterfaceMultiStateDesign.ccscoring / ScoreFunction.hh
dna / DnaInterfaceMultiStateDesign.ccscoring / ScoreFunctionFactory.hh
dna / DnaInterfaceMultiStateDesign.ccpack / task / TaskFactory.hh
dna / DnaInterfaceMultiStateDesign.ccpack / task / operation / TaskOperations.hh
dna / DnaInterfaceMultiStateDesign.hhpack / task / PackerTask.fwd.hh
dna / DnaInterfaceMultiStateDesign.hhpose / Pose.fwd.hh
dna / DnaInterfacePacker.ccoptimization / AtomTreeMinimizer.hh
dna / DnaInterfacePacker.ccpack / interaction_graph / InteractionGraphBase.hh
dna / DnaInterfacePacker.ccoptimization / MinimizerOptions.hh
dna / DnaInterfacePacker.cckinematics / MoveMap.hh
dna / DnaInterfacePacker.ccpack / task / PackerTask.hh
dna / DnaInterfacePacker.ccpose / PDBInfo.hh
dna / DnaInterfacePacker.ccpose / Pose.hh
dna / DnaInterfacePacker.ccconformation / Residue.hh
dna / DnaInterfacePacker.ccchemical / ResidueType.hh
dna / DnaInterfacePacker.ccchemical / ResidueTypeSet.hh
dna / DnaInterfacePacker.ccpack / rotamer_set / RotamerSets.hh
dna / DnaInterfacePacker.ccscoring / ScoreFunction.hh
dna / DnaInterfacePacker.ccpack / task / TaskFactory.hh
dna / DnaInterfacePacker.ccpack / task / operation / TaskOperations.hh
dna / DnaInterfacePacker.cctypes.hh
dna / DnaInterfacePacker.ccchemical / VariantType.hh
dna / DnaInterfacePacker.hhpack / interaction_graph / InteractionGraphBase.fwd.hh
dna / DnaInterfacePacker.hhoptimization / MinimizerOptions.fwd.hh
dna / DnaInterfacePacker.hhkinematics / MoveMap.fwd.hh
dna / DnaInterfacePacker.hhpack / task / PackerTask.fwd.hh
dna / DnaInterfacePacker.hhpose / Pose.fwd.hh
dna / DnaInterfacePacker.hhchemical / ResidueType.fwd.hh
dna / DnaInterfacePacker.hhpack / rotamer_set / RotamerSets.fwd.hh
dna / DnaInterfacePacker.hhscoring / ScoreFunction.fwd.hh
dna / DnaInterfacePacker.hhtypes.hh
dna / DNAParameters.ccscoring / dna / base_geometry.hh
dna / DNAParameters.ccpose / PDBInfo.hh
dna / DNAParameters.ccpose / Pose.hh
dna / DNAParameters.ccconformation / Residue.hh
dna / DNAParameters.ccchemical / ResidueType.hh
dna / DNAParameters.ccscoring / dna / setup.hh
dna / DNAParameters.hhpose / Pose.fwd.hh
dna / DNAParameters.hhconformation / Residue.fwd.hh
dna / DNAParameters.hhtypes.hh
protein_interface_design / movers / DockAndRetrieveSidechains.ccchemical / ChemicalManager.fwd.hh
protein_interface_design / movers / DockAndRetrieveSidechains.cckinematics / FoldTree.hh
protein_interface_design / movers / DockAndRetrieveSidechains.ccscoring / ScoreFunction.hh
protein_interface_design / movers / DockAndRetrieveSidechains.ccscoring / symmetry / SymmetricScoreFunction.hh
protein_interface_design / movers / DockAndRetrieveSidechains.ccpack / task / TaskFactory.hh
protein_interface_design / movers / DockAndRetrieveSidechains.hhpose / Pose.fwd.hh
protein_interface_design / movers / DockAndRetrieveSidechains.hhtypes.hh
protein_interface_design / DockDesignFilterFactory.hhpose / Pose.fwd.hh
jd2 / DockDesignParser.ccpose / metrics / CalculatorFactory.hh
jd2 / DockDesignParser.ccpose / metrics / simple_calculators / InterfaceDeltaEnergeticsCalculator.hh
jd2 / DockDesignParser.ccpose / metrics / simple_calculators / InterfaceNeighborDefinitionCalculator.hh
jd2 / DockDesignParser.ccpose / metrics / simple_calculators / InterfaceSasaDefinitionCalculator.hh
jd2 / DockDesignParser.ccpose / Pose.hh
jd2 / DockDesignParser.ccpose / metrics / simple_calculators / SasaCalculator.hh
jd2 / DockDesignParser.ccscoring / ScoreFunction.hh
jd2 / DockDesignParser.ccscoring / ScoreFunctionFactory.hh
jd2 / DockDesignParser.ccscoring / ScoreType.hh
jd2 / DockDesignParser.cctypes.hh
jd2 / DockDesignParser.hhpose / Pose.fwd.hh
docking / DockFilters.ccpose / Pose.fwd.hh
docking / DockFilters.ccscoring / ScoreFunction.hh
docking / DockFilters.ccscoring / ScoreFunctionFactory.hh
docking / DockFilters.hhpose / Pose.fwd.hh
docking / DockFilters.hhscoring / ScoreFunction.fwd.hh
docking / DockFilters.hhtypes.hh
docking / DockingEnsemble.ccpose / datacache / CacheableDataType.hh
docking / DockingEnsemble.ccchemical / ChemicalManager.fwd.hh
docking / DockingEnsemble.ccimport_pose / import_pose.hh
docking / DockingEnsemble.cckinematics / Jump.hh
docking / DockingEnsemble.ccpose / Pose.hh
docking / DockingEnsemble.ccscoring / ScoreFunction.hh
docking / DockingEnsemble.cctypes.hh
docking / DockingEnsemble.hhpose / Pose.hh
docking / DockingEnsemble.hhscoring / ScoreFunction.hh
docking / DockingEnsemble.hhtypes.hh
docking / DockingEnsemblePrepackProtocol.ccchemical / ChemicalManager.fwd.hh
docking / DockingEnsemblePrepackProtocol.cckinematics / FoldTree.hh
docking / DockingEnsemblePrepackProtocol.ccpose / Pose.hh
docking / DockingEnsemblePrepackProtocol.ccscoring / ScoreFunction.hh
docking / DockingEnsemblePrepackProtocol.ccscoring / ScoreFunctionFactory.hh
docking / DockingEnsemblePrepackProtocol.ccpack / task / TaskFactory.hh
docking / DockingHighRes.ccscoring / ScoreFunction.hh
docking / DockingHighRes.ccscoring / ScoreFunctionFactory.hh
docking / DockingHighRes.ccpack / task / TaskFactory.hh
docking / DockingHighRes.hhpose / Pose.fwd.hh
docking / DockingHighRes.hhscoring / ScoreFunction.fwd.hh
docking / DockingHighRes.hhpack / task / TaskFactory.fwd.hh
docking / DockingHighRes.hhpack / task / operation / TaskOperation.fwd.hh
docking / DockingHighResLegacy.cckinematics / Jump.hh
docking / DockingHighResLegacy.cckinematics / MoveMap.hh
docking / DockingHighResLegacy.ccpack / task / operation / NoRepackDisulfides.hh
docking / DockingHighResLegacy.ccpack / task / PackerTask.hh
docking / DockingHighResLegacy.ccpose / PDBInfo.hh
docking / DockingHighResLegacy.ccpose / Pose.hh
docking / DockingHighResLegacy.ccconformation / Residue.hh
docking / DockingHighResLegacy.ccpack / dunbrack / RotamerConstraint.hh
docking / DockingHighResLegacy.ccscoring / ScoreFunction.hh
docking / DockingHighResLegacy.ccpack / task / TaskFactory.hh
docking / DockingHighResLegacy.ccpack / task / operation / TaskOperations.hh
docking / DockingHighResLegacy.ccpack / rotamer_set / UnboundRotamersOperation.hh
docking / DockingHighResLegacy.hhkinematics / MoveMap.fwd.hh
docking / DockingInitialPerturbation.ccscoring / Energies.hh
docking / DockingInitialPerturbation.ccpose / Pose.fwd.hh
docking / DockingInitialPerturbation.ccpose / Pose.hh
docking / DockingInitialPerturbation.ccscoring / ScoreFunction.hh
docking / DockingInitialPerturbation.ccscoring / ScoreFunctionFactory.hh
docking / DockingInitialPerturbation.hhpose / Pose.fwd.hh
docking / DockingInitialPerturbation.hhscoring / ScoreFunction.fwd.hh
docking / DockingLowRes.cckinematics / MoveMap.hh
docking / DockingLowRes.ccpose / Pose.hh
docking / DockingLowRes.ccscoring / ScoreFunction.hh
docking / DockingLowRes.ccscoring / ScoreFunctionFactory.hh
docking / DockingLowRes.hhkinematics / MoveMap.fwd.hh
docking / DockingLowRes.hhpose / Pose.fwd.hh
docking / DockingLowRes.hhscoring / ScoreFunction.fwd.hh
docking / DockingLowResEnsemble.cckinematics / MoveMap.hh
docking / DockingLowResEnsemble.ccpose / Pose.hh
docking / DockingLowResEnsemble.ccscoring / ScoreFunction.hh
docking / DockingLowResEnsemble.ccscoring / ScoreFunctionFactory.hh
docking / DockingLowResEnsemble.hhkinematics / MoveMap.fwd.hh
docking / DockingLowResEnsemble.hhpose / Pose.fwd.hh
docking / DockingLowResEnsemble.hhscoring / ScoreFunction.fwd.hh
docking / DockingPrepackProtocol.ccscoring / ScoreFunction.hh
docking / DockingPrepackProtocol.ccpack / task / TaskFactory.hh
docking / DockingPrepackProtocol.hhpose / Pose.fwd.hh
docking / DockingProtocol.ccchemical / ChemicalManager.fwd.hh
docking / DockingProtocol.ccscoring / constraints / ConstraintSet.hh
docking / DockingProtocol.ccscoring / Energies.hh
docking / DockingProtocol.ccimport_pose / import_pose.hh
docking / DockingProtocol.ccpose / Pose.hh
docking / DockingProtocol.ccscoring / rms_util.tmpl.hh
docking / DockingProtocol.ccscoring / ScoreFunction.hh
docking / DockingProtocol.ccscoring / ScoreFunctionFactory.hh
docking / DockingProtocol.ccscoring / ScoreType.hh
docking / DockingProtocol.cctypes.hh
docking / DockingProtocol.hhkinematics / FoldTree.hh
docking / DockingProtocol.hhpose / Pose.fwd.hh
docking / DockingProtocol.hhscoring / ScoreFunction.hh
docking / DockingProtocol.hhpack / task / TaskFactory.hh
docking / DockingProtocol.hhpack / task / operation / TaskOperation.fwd.hh
docking / DockingProtocol.hhtypes.hh
docking / DockMCMCycle.cckinematics / MoveMap.hh
docking / DockMCMCycle.ccpack / task / PackerTask.hh
docking / DockMCMCycle.ccpose / Pose.hh
docking / DockMCMCycle.ccscoring / ScoreFunction.hh
docking / DockMCMCycle.ccscoring / ScoreFunctionFactory.hh
docking / DockMCMCycle.ccpack / task / TaskFactory.hh
docking / DockMCMCycle.hhkinematics / MoveMap.fwd.hh
docking / DockMCMCycle.hhpose / Pose.fwd.hh
docking / DockMCMCycle.hhscoring / ScoreFunction.fwd.hh
docking / DockMCMCycle.hhpack / task / TaskFactory.fwd.hh
docking / DockMCMProtocol.cckinematics / FoldTree.hh
docking / DockMCMProtocol.cckinematics / MoveMap.hh
docking / DockMCMProtocol.ccpose / Pose.hh
docking / DockMCMProtocol.ccscoring / ScoreFunction.hh
docking / DockMCMProtocol.ccpack / task / TaskFactory.hh
docking / DockMCMProtocol.hhkinematics / MoveMap.fwd.hh
docking / DockMCMProtocol.hhpose / Pose.fwd.hh
docking / DockMinMover.cckinematics / MoveMap.hh
docking / DockMinMover.ccscoring / ScoreFunction.hh
docking / DockMinMover.hhkinematics / MoveMap.fwd.hh
docking / DockMinMover.hhpose / Pose.fwd.hh
docking / DockSetupMover.ccpose / Pose.hh
docking / DockSetupMover.hhkinematics / FoldTree.hh
docking / DockSetupMover.hhpose / Pose.fwd.hh
docking / DockSetupMover.hhscoring / ScoreFunction.hh
docking / DockSetupMover.hhtypes.hh
docking / DockTaskFactory.cckinematics / FoldTree.hh
docking / DockTaskFactory.cckinematics / Jump.hh
docking / DockTaskFactory.ccpack / task / operation / NoRepackDisulfides.hh
docking / DockTaskFactory.ccpose / PDBInfo.hh
docking / DockTaskFactory.ccpose / Pose.hh
docking / DockTaskFactory.ccconformation / Residue.hh
docking / DockTaskFactory.ccpack / task / TaskFactory.hh
docking / DockTaskFactory.ccpack / task / operation / TaskOperations.hh
docking / DockTaskFactory.ccpack / rotamer_set / UnboundRotamersOperation.hh
docking / DockTaskFactory.hhpose / Pose.fwd.hh
docking / DockTaskFactory.hhpack / task / operation / TaskOperation.fwd.hh
docking / DockTaskFactory.hhtypes.hh
topology_broker / DofClaim.hhkinematics / MoveMap.hh
topology_broker / DofClaim.hhtypes.hh
simple_moves / DOFHistogramRecorder.cckinematics / tree / Atom.hh
simple_moves / DOFHistogramRecorder.cckinematics / AtomTree.hh
simple_moves / DOFHistogramRecorder.ccid / DOF_ID_Range.hh
simple_moves / DOFHistogramRecorder.ccpose / Pose.hh
simple_moves / DOFHistogramRecorder.ccchemical / ResidueType.hh
simple_moves / DOFHistogramRecorder.hhid / DOF_ID.fwd.hh
simple_moves / DOFHistogramRecorder.hhid / DOF_ID_Range.fwd.hh
simple_moves / DOFHistogramRecorder.hhpose / Pose.fwd.hh
simple_moves / DOFHistogramRecorder.hhid / types.hh
simple_moves / DOFHistogramRecorder.hhtypes.hh
hybridization / DomainAssembly.ccid / AtomID.hh
hybridization / DomainAssembly.ccid / AtomID_Map.hh
abinitio / DomainAssembly.ccchemical / ChemicalManager.fwd.hh
hybridization / DomainAssembly.ccconformation / Conformation.hh
hybridization / DomainAssembly.ccscoring / Energies.hh
hybridization / DomainAssembly.ccscoring / methods / EnergyMethodOptions.hh
abinitio / DomainAssembly.ccfragment / FragmentIO.hh
abinitio / DomainAssembly.ccfragment / FragSet.hh
abinitio / DomainAssembly.cckinematics / MoveMap.hh
abinitio / DomainAssembly.ccpack / pack_rotamers.hh
abinitio / DomainAssembly.ccpack / task / PackerTask.hh
hybridization / DomainAssembly.ccpose / PDBInfo.hh
abinitio / DomainAssembly.ccpack / task / ResfileReader.hh
abinitio / DomainAssembly.ccconformation / Residue.hh
hybridization / DomainAssembly.ccscoring / ScoreFunction.hh
hybridization / DomainAssembly.ccscoring / ScoreFunctionFactory.hh
abinitio / DomainAssembly.ccscoring / ScoreFunctionFactory.hh
abinitio / DomainAssembly.ccpose / selection.hh
abinitio / DomainAssembly.ccpack / task / TaskFactory.hh
hybridization / DomainAssembly.cctypes.hh
hybridization / DomainAssembly.ccpose / util.hh
hybridization / DomainAssembly.ccchemical / VariantType.hh
hybridization / DomainAssembly.hhscoring / constraints / AtomPairConstraint.hh
hybridization / DomainAssembly.hhscoring / constraints / BoundConstraint.hh
hybridization / DomainAssembly.hhchemical / ChemicalManager.hh
hybridization / DomainAssembly.hhkinematics / FoldTree.hh
hybridization / DomainAssembly.hhfragment / FragSet.fwd.hh
abinitio / DomainAssembly.hhfragment / FragSet.fwd.hh
hybridization / DomainAssembly.hhfragment / FragSet.hh
hybridization / DomainAssembly.hhkinematics / Jump.hh
abinitio / DomainAssembly.hhpose / Pose.fwd.hh
hybridization / DomainAssembly.hhpose / Pose.hh
hybridization / DomainAssembly.hhconformation / Residue.hh
hybridization / DomainAssembly.hhscoring / ScoreFunction.hh
hybridization / DomainAssembly.hhscoring / ScoreFunctionFactory.hh
hybridization / DomainAssembly.hhtypes.hh
abinitio / DomainAssembly.hhtypes.hh
abinitio / DoubleLayerKinematicAbinitio.cckinematics / MoveMap.hh
abinitio / DoubleLayerKinematicAbinitio.ccpose / Pose.hh
abinitio / DoubleLayerKinematicAbinitio.cckinematics / util.hh
abinitio / DoubleLayerKinematicAbinitio.hhpose / Pose.fwd.hh
abinitio / DoubleLayerKinematicAbinitio.hhtypes.hh
match / downstream / DownstreamAlgorithm.ccid / AtomID.hh
match / downstream / DownstreamAlgorithm.ccconformation / Residue.hh
match / downstream / DownstreamAlgorithm.hhid / AtomID.fwd.hh
match / downstream / DownstreamAlgorithm.hhconformation / Residue.fwd.hh
match / downstream / DownstreamAlgorithm.hhtypes.hh
match / downstream / DownstreamBuilder.hhid / AtomID.fwd.hh
match / downstream / DownstreamBuilder.hhpose / Pose.fwd.hh
match / downstream / DownstreamBuilder.hhconformation / Residue.fwd.hh
match / downstream / DownstreamBuilder.hhchemical / ResidueType.fwd.hh
match / downstream / DownstreamBuilder.hhtypes.hh
match / output / DownstreamRMSEvaluator.ccid / AtomID.hh
match / output / DownstreamRMSEvaluator.ccpose / Pose.hh
match / output / DownstreamRMSEvaluator.ccconformation / Residue.hh
match / output / DownstreamRMSEvaluator.hhid / AtomID.fwd.hh
match / output / DownstreamRMSEvaluator.hhpose / Pose.fwd.hh
moves / DsspMover.ccscoring / dssp / Dssp.hh
moves / DsspMover.hhpose / Pose.fwd.hh
simple_moves / DumpPdb.ccpose / Pose.hh
simple_moves / DumpPdb.ccscoring / ScoreFunction.hh
simple_moves / DumpPdb.hhpose / Pose.fwd.hh
simple_moves / DumpPdb.hhscoring / ScoreFunction.hh
simple_moves / DumpPdb.hhtypes.hh
pack_daemon / DynamicAggregateFunction.ccimport_pose / import_pose.hh
pack_daemon / DynamicAggregateFunction.ccpose / Pose.hh
pack_daemon / DynamicAggregateFunction.ccscoring / ScoreFunction.hh
pack_daemon / DynamicAggregateFunction.cctypes.hh
pack_daemon / DynamicAggregateFunction.hhscoring / ScoreFunction.fwd.hh
pack_daemon / DynamicAggregateFunction.hhtypes.hh
simple_filters / EnergyPerResidueFilter.ccchemical / ChemicalManager.fwd.hh
simple_filters / EnergyPerResidueFilter.ccconformation / Conformation.hh
simple_filters / EnergyPerResidueFilter.ccscoring / Energies.hh
simple_filters / EnergyPerResidueFilter.ccscoring / methods / EnergyMethodOptions.hh
simple_filters / EnergyPerResidueFilter.cckinematics / FoldTree.hh
simple_filters / EnergyPerResidueFilter.ccscoring / hbonds / HBondOptions.hh
simple_filters / EnergyPerResidueFilter.ccscoring / hbonds / HBondSet.hh
simple_filters / EnergyPerResidueFilter.ccpose / PDBInfo.hh
simple_filters / EnergyPerResidueFilter.ccpose / Pose.hh
simple_filters / EnergyPerResidueFilter.ccpose / selection.hh
simple_filters / EnergyPerResidueFilter.ccutil / SwitchResidueTypeSet.hh
simple_filters / EnergyPerResidueFilter.hhpose / Pose.fwd.hh
simple_filters / EnergyPerResidueFilter.hhscoring / ScoreFunction.hh
simple_filters / EnergyPerResidueFilter.hhscoring / ScoreType.hh
scoring / methods / EnsembleEnergy.ccpose / datacache / CacheableDataType.hh
scoring / methods / EnsembleEnergy.ccscoring / EnergyMap.hh
scoring / methods / EnsembleEnergy.ccpose / Pose.hh
scoring / methods / EnsembleEnergy.hhpose / Pose.fwd.hh
scoring / methods / EnsembleEnergy.hhscoring / ScoreFunction.fwd.hh
scoring / methods / EnsembleEnergy.hhscoring / methods / WholeStructureEnergy.hh
scoring / methods / EnsembleEnergyCreator.hhscoring / methods / EnergyMethodCreator.hh
scoring / methods / EnsembleEnergyCreator.hhtypes.hh
genetic_algorithm / Entity.cctypes.hh
genetic_algorithm / Entity.hhtypes.hh
pack_daemon / EntityCorrespondence.ccpose / PDBInfo.hh
pack_daemon / EntityCorrespondence.ccpose / PDBPoseMap.hh
pack_daemon / EntityCorrespondence.ccpose / Pose.hh
pack_daemon / EntityCorrespondence.hhpose / PDBPoseMap.fwd.hh
pack_daemon / EntityCorrespondence.hhpose / Pose.fwd.hh
pack_daemon / EntityCorrespondence.hhtypes.hh
genetic_algorithm / EntityRandomizer.cctypes.hh
genetic_algorithm / EntityRandomizer.hhtypes.hh
toolbox / match_enzdes_util / EnzConstraintIO.ccchemical / ChemicalManager.hh
toolbox / match_enzdes_util / EnzConstraintIO.ccscoring / constraints / Constraint.hh
toolbox / match_enzdes_util / EnzConstraintIO.ccscoring / constraints / Constraints.hh
toolbox / match_enzdes_util / EnzConstraintIO.ccscoring / constraints / ConstraintSet.hh
toolbox / match_enzdes_util / EnzConstraintIO.ccpose / PDBInfo.hh
toolbox / match_enzdes_util / EnzConstraintIO.ccpose / PDBPoseMap.hh
toolbox / match_enzdes_util / EnzConstraintIO.ccpose / Pose.hh
toolbox / match_enzdes_util / EnzConstraintIO.ccconformation / Residue.hh
toolbox / match_enzdes_util / EnzConstraintIO.ccscoring / ScoreFunction.hh
toolbox / match_enzdes_util / EnzConstraintIO.hhpose / Pose.fwd.hh
toolbox / match_enzdes_util / EnzConstraintIO.hhchemical / ResidueTypeSet.fwd.hh
toolbox / match_enzdes_util / EnzConstraintIO.hhscoring / ScoreFunction.fwd.hh
toolbox / match_enzdes_util / EnzConstraintIO.hhid / SequenceMapping.fwd.hh
toolbox / match_enzdes_util / EnzConstraintIO.hhtypes.hh
toolbox / match_enzdes_util / EnzConstraintParameters.ccscoring / constraints / AmbiguousConstraint.hh
toolbox / match_enzdes_util / EnzConstraintParameters.ccscoring / constraints / AngleConstraint.hh
toolbox / match_enzdes_util / EnzConstraintParameters.ccid / AtomID.hh
toolbox / match_enzdes_util / EnzConstraintParameters.ccscoring / constraints / AtomPairConstraint.hh
toolbox / match_enzdes_util / EnzConstraintParameters.ccscoring / constraints / BoundConstraint.hh
toolbox / match_enzdes_util / EnzConstraintParameters.ccscoring / constraints / CharmmPeriodicFunc.hh
toolbox / match_enzdes_util / EnzConstraintParameters.ccchemical / ChemicalManager.hh
toolbox / match_enzdes_util / EnzConstraintParameters.ccconformation / Conformation.hh
toolbox / match_enzdes_util / EnzConstraintParameters.ccscoring / constraints / Constraint.hh
toolbox / match_enzdes_util / EnzConstraintParameters.ccscoring / constraints / Constraints.hh
toolbox / match_enzdes_util / EnzConstraintParameters.ccscoring / constraints / ConstraintSet.hh
toolbox / match_enzdes_util / EnzConstraintParameters.ccscoring / constraints / DihedralConstraint.hh
toolbox / match_enzdes_util / EnzConstraintParameters.ccscoring / Energies.hh
toolbox / match_enzdes_util / EnzConstraintParameters.ccscoring / constraints / Func.hh
toolbox / match_enzdes_util / EnzConstraintParameters.ccscoring / constraints / MultiConstraint.hh
toolbox / match_enzdes_util / EnzConstraintParameters.ccchemical / Patch.hh
toolbox / match_enzdes_util / EnzConstraintParameters.ccpose / PDBInfo.hh
toolbox / match_enzdes_util / EnzConstraintParameters.ccpose / Pose.hh
toolbox / match_enzdes_util / EnzConstraintParameters.ccpose / Remarks.hh
toolbox / match_enzdes_util / EnzConstraintParameters.ccchemical / ResidueTypeSet.hh
toolbox / match_enzdes_util / EnzConstraintParameters.ccscoring / ScoreFunction.hh
toolbox / match_enzdes_util / EnzConstraintParameters.ccid / SequenceMapping.hh
toolbox / match_enzdes_util / EnzConstraintParameters.ccpack / dunbrack / SingleLigandRotamerLibrary.hh
toolbox / match_enzdes_util / EnzConstraintParameters.cctypes.hh
toolbox / match_enzdes_util / EnzConstraintParameters.ccpose / util.hh
toolbox / match_enzdes_util / EnzConstraintParameters.hhscoring / constraints / Constraint.fwd.hh
toolbox / match_enzdes_util / EnzConstraintParameters.hhscoring / constraints / Func.fwd.hh
toolbox / match_enzdes_util / EnzConstraintParameters.hhpose / Pose.fwd.hh
toolbox / match_enzdes_util / EnzConstraintParameters.hhchemical / ResidueTypeSet.fwd.hh
toolbox / match_enzdes_util / EnzConstraintParameters.hhscoring / ScoreFunction.fwd.hh
toolbox / match_enzdes_util / EnzConstraintParameters.hhid / SequenceMapping.fwd.hh
toolbox / match_enzdes_util / EnzConstraintParameters.hhtypes.hh
toolbox / match_enzdes_util / EnzCstTemplateRes.ccchemical / AA.hh
toolbox / match_enzdes_util / EnzCstTemplateRes.ccid / AtomID.hh
toolbox / match_enzdes_util / EnzCstTemplateRes.ccchemical / AtomType.hh
toolbox / match_enzdes_util / EnzCstTemplateRes.ccpose / Pose.hh
toolbox / match_enzdes_util / EnzCstTemplateRes.ccconformation / Residue.hh
toolbox / match_enzdes_util / EnzCstTemplateRes.ccchemical / ResidueTypeSet.hh
toolbox / match_enzdes_util / EnzCstTemplateRes.ccid / SequenceMapping.hh
toolbox / match_enzdes_util / EnzCstTemplateRes.hhid / AtomID.fwd.hh
toolbox / match_enzdes_util / EnzCstTemplateRes.hhpose / Pose.fwd.hh
toolbox / match_enzdes_util / EnzCstTemplateRes.hhconformation / Residue.fwd.hh
toolbox / match_enzdes_util / EnzCstTemplateRes.hhchemical / ResidueType.fwd.hh
toolbox / match_enzdes_util / EnzCstTemplateRes.hhchemical / ResidueTypeSet.fwd.hh
toolbox / match_enzdes_util / EnzCstTemplateRes.hhid / SequenceMapping.fwd.hh
enzdes / enzdes_util.ccid / AtomID.hh
enzdes / enzdes_util.ccpose / datacache / CacheableDataType.hh
enzdes / enzdes_util.ccscoring / Energies.hh
enzdes / enzdes_util.ccscoring / methods / EnergyMethodOptions.hh
enzdes / enzdes_util.ccscoring / constraints / Func.hh
enzdes / enzdes_util.ccgraph / Graph.hh
enzdes / enzdes_util.ccpack / task / IGEdgeReweightContainer.hh
enzdes / enzdes_util.ccimport_pose / import_pose.hh
enzdes / enzdes_util.ccpack / packer_neighbors.hh
enzdes / enzdes_util.ccpack / task / PackerTask.hh
enzdes / enzdes_util.ccpose / PDBInfo.hh
enzdes / enzdes_util.ccpose / Pose.hh
enzdes / enzdes_util.ccio / pdb / pose_io.hh
enzdes / enzdes_util.ccconformation / Residue.hh
enzdes / enzdes_util.ccchemical / ResidueTypeSet.fwd.hh
enzdes / enzdes_util.ccpack / rotamer_set / RotamerSet.hh
enzdes / enzdes_util.ccpack / rotamer_set / RotamerSetFactory.hh
enzdes / enzdes_util.ccpack / rotamer_set / RotamerSetOperation.hh
enzdes / enzdes_util.ccscoring / ScoreFunction.hh
enzdes / enzdes_util.ccpack / task / TaskFactory.hh
enzdes / enzdes_util.ccpose / util.hh
enzdes / enzdes_util.hhpack / task / PackerTask.fwd.hh
enzdes / enzdes_util.hhpose / Pose.fwd.hh
enzdes / enzdes_util.hhconformation / Residue.fwd.hh
enzdes / enzdes_util.hhchemical / ResidueType.fwd.hh
enzdes / enzdes_util.hhscoring / ScoreFunction.fwd.hh
enzdes / EnzdesBaseProtocol.ccscoring / constraints / BoundConstraint.hh
enzdes / EnzdesBaseProtocol.ccchemical / ChemicalManager.hh
enzdes / EnzdesBaseProtocol.ccscoring / constraints / ConstraintSet.hh
enzdes / EnzdesBaseProtocol.ccscoring / dssp / Dssp.hh
enzdes / EnzdesBaseProtocol.ccscoring / Energies.hh
enzdes / EnzdesBaseProtocol.ccscoring / methods / EnergyMethodOptions.hh
enzdes / EnzdesBaseProtocol.cckinematics / FoldTree.hh
enzdes / EnzdesBaseProtocol.ccimport_pose / import_pose.hh
enzdes / EnzdesBaseProtocol.cckinematics / MoveMap.hh
enzdes / EnzdesBaseProtocol.ccpack / task / PackerTask.hh
enzdes / EnzdesBaseProtocol.ccpose / PDBInfo.hh
enzdes / EnzdesBaseProtocol.ccpose / Pose.hh
enzdes / EnzdesBaseProtocol.ccconformation / Residue.hh
enzdes / EnzdesBaseProtocol.ccchemical / ResidueTypeSet.hh
enzdes / EnzdesBaseProtocol.ccscoring / ScoreFunction.hh
enzdes / EnzdesBaseProtocol.ccscoring / ScoreFunctionFactory.hh
enzdes / EnzdesBaseProtocol.ccid / SequenceMapping.hh
enzdes / EnzdesBaseProtocol.ccpack / task / TaskFactory.hh
enzdes / EnzdesBaseProtocol.ccpack / task / operation / TaskOperations.hh
enzdes / EnzdesBaseProtocol.ccpack / rotamer_set / UnboundRotamersOperation.hh
enzdes / EnzdesBaseProtocol.ccpose / util.hh
enzdes / EnzdesBaseProtocol.hhscoring / EnergyMap.fwd.hh
enzdes / EnzdesBaseProtocol.hhscoring / EnergyMap.hh
enzdes / EnzdesBaseProtocol.hhpack / task / PackerTask.fwd.hh
enzdes / EnzdesBaseProtocol.hhpose / Pose.fwd.hh
enzdes / EnzdesBaseProtocol.hhchemical / ResidueTypeSet.fwd.hh
enzdes / EnzdesBaseProtocol.hhid / SequenceMapping.fwd.hh
toolbox / match_enzdes_util / EnzdesCacheableObserver.ccpose / datacache / CacheableObserverType.hh
toolbox / match_enzdes_util / EnzdesCacheableObserver.ccconformation / Conformation.hh
toolbox / match_enzdes_util / EnzdesCacheableObserver.ccconformation / signals / LengthEvent.hh
toolbox / match_enzdes_util / EnzdesCacheableObserver.ccpose / datacache / ObserverCache.hh
toolbox / match_enzdes_util / EnzdesCacheableObserver.ccpack / task / PackerTask.hh
toolbox / match_enzdes_util / EnzdesCacheableObserver.ccpose / Pose.hh
toolbox / match_enzdes_util / EnzdesCacheableObserver.ccconformation / Residue.hh
toolbox / match_enzdes_util / EnzdesCacheableObserver.ccscoring / constraints / ResidueTypeConstraint.hh
toolbox / match_enzdes_util / EnzdesCacheableObserver.ccid / SequenceMapping.hh
toolbox / match_enzdes_util / EnzdesCacheableObserver.ccsequence / SequenceProfile.hh
toolbox / match_enzdes_util / EnzdesCacheableObserver.ccscoring / constraints / SequenceProfileConstraint.hh
toolbox / match_enzdes_util / EnzdesCacheableObserver.hhpose / datacache / CacheableObserver.hh
toolbox / match_enzdes_util / EnzdesCacheableObserver.hhscoring / constraints / Constraint.fwd.hh
toolbox / match_enzdes_util / EnzdesCacheableObserver.hhconformation / signals / LengthEvent.fwd.hh
toolbox / match_enzdes_util / EnzdesCacheableObserver.hhpack / task / PackerTask.fwd.hh
toolbox / match_enzdes_util / EnzdesCacheableObserver.hhpose / Pose.fwd.hh
toolbox / match_enzdes_util / EnzdesCacheableObserver.hhconformation / Residue.fwd.hh
toolbox / match_enzdes_util / EnzdesCacheableObserver.hhtypes.hh
toolbox / match_enzdes_util / EnzdesCstCache.ccid / AtomID.hh
toolbox / match_enzdes_util / EnzdesCstCache.ccscoring / constraints / Constraint.hh
toolbox / match_enzdes_util / EnzdesCstCache.ccpose / Pose.hh
toolbox / match_enzdes_util / EnzdesCstCache.ccchemical / ResidueType.hh
toolbox / match_enzdes_util / EnzdesCstCache.ccid / SequenceMapping.hh
toolbox / match_enzdes_util / EnzdesCstCache.hhscoring / constraints / Constraint.fwd.hh
toolbox / match_enzdes_util / EnzdesCstCache.hhpose / Pose.fwd.hh
toolbox / match_enzdes_util / EnzdesCstCache.hhid / SequenceMapping.fwd.hh
toolbox / match_enzdes_util / EnzdesCstCache.hhtypes.hh
enzdes / EnzdesFixBBProtocol.ccpack / task / PackerTask.hh
enzdes / EnzdesFixBBProtocol.ccpose / Pose.hh
enzdes / EnzdesFixBBProtocol.ccscoring / ScoreFunction.hh
enzdes / EnzdesFixBBProtocol.hhpose / Pose.fwd.hh
enzdes / EnzdesFlexBBProtocol.ccfragment / BBTorsionAndAnglesSRFD.hh
enzdes / EnzdesFlexBBProtocol.ccpose / datacache / cacheable_observers.hh
enzdes / EnzdesFlexBBProtocol.ccpose / datacache / CacheableObserverType.hh
enzdes / EnzdesFlexBBProtocol.ccscoring / Energies.hh
enzdes / EnzdesFlexBBProtocol.ccscoring / EnergyGraph.hh
enzdes / EnzdesFlexBBProtocol.ccscoring / EnergyMap.hh
enzdes / EnzdesFlexBBProtocol.cckinematics / FoldTree.hh
enzdes / EnzdesFlexBBProtocol.ccfragment / FragData.hh
enzdes / EnzdesFlexBBProtocol.ccgraph / graph_util.hh
enzdes / EnzdesFlexBBProtocol.ccpack / task / IGEdgeReweightContainer.hh
enzdes / EnzdesFlexBBProtocol.cckinematics / MoveMap.hh
enzdes / EnzdesFlexBBProtocol.ccpose / datacache / ObserverCache.hh
enzdes / EnzdesFlexBBProtocol.ccpack / pack_rotamers.hh
enzdes / EnzdesFlexBBProtocol.ccpack / packer_neighbors.hh
enzdes / EnzdesFlexBBProtocol.ccpack / task / PackerTask.hh
enzdes / EnzdesFlexBBProtocol.ccpose / PDBInfo.hh
enzdes / EnzdesFlexBBProtocol.ccpack / interaction_graph / PDInteractionGraph.hh
enzdes / EnzdesFlexBBProtocol.ccpose / Pose.hh
enzdes / EnzdesFlexBBProtocol.ccchemical / ResidueType.hh
enzdes / EnzdesFlexBBProtocol.ccchemical / ResidueTypeSet.hh
enzdes / EnzdesFlexBBProtocol.ccscoring / rms_util.hh
enzdes / EnzdesFlexBBProtocol.ccscoring / rms_util.tmpl.hh
enzdes / EnzdesFlexBBProtocol.ccpack / rotamer_set / RotamerSetOperation.hh
enzdes / EnzdesFlexBBProtocol.ccpack / rotamer_set / RotamerSets.hh
enzdes / EnzdesFlexBBProtocol.ccscoring / ScoreFunction.hh
enzdes / EnzdesFlexBBProtocol.ccid / SequenceMapping.hh
enzdes / EnzdesFlexBBProtocol.ccpack / task / TaskFactory.hh
enzdes / EnzdesFlexBBProtocol.ccscoring / TenANeighborGraph.hh
enzdes / EnzdesFlexBBProtocol.ccpose / util.hh
enzdes / EnzdesFlexBBProtocol.ccfragment / util.hh
enzdes / EnzdesFlexBBProtocol.ccchemical / VariantType.hh
enzdes / EnzdesFlexBBProtocol.hhfragment / FragData.fwd.hh
enzdes / EnzdesFlexBBProtocol.hhfragment / Frame.hh
enzdes / EnzdesFlexBBProtocol.hhpose / Pose.hh
enzdes / EnzdesJobInputter.ccpose / datacache / cacheable_observers.hh
enzdes / EnzdesJobInputter.ccpose / datacache / CacheableObserverType.hh
enzdes / EnzdesJobInputter.ccpose / datacache / ObserverCache.hh
enzdes / EnzdesJobInputter.ccpose / Pose.hh
enzdes / EnzdesJobInputter.hhpose / Pose.fwd.hh
enzdes / EnzdesJobOutputter.ccpose / Pose.hh
enzdes / EnzdesJobOutputter.ccio / silent / ScoreFileSilentStruct.hh
enzdes / EnzdesJobOutputter.ccio / silent / SilentEnergy.hh
enzdes / EnzdesJobOutputter.ccio / silent / SilentFileData.hh
enzdes / EnzdesJobOutputter.hhio / silent / SilentFileData.fwd.hh
toolbox / match_enzdes_util / EnzdesLoopsFile.hhtypes.hh
enzdes / EnzdesMovers.ccid / AtomID.hh
enzdes / EnzdesMovers.ccscoring / constraints / AtomPairConstraint.hh
enzdes / EnzdesMovers.ccconformation / Conformation.hh
enzdes / EnzdesMovers.ccscoring / constraints / Constraint.hh
enzdes / EnzdesMovers.ccscoring / constraints / Constraints.hh
enzdes / EnzdesMovers.ccscoring / constraints / ConstraintSet.hh
enzdes / EnzdesMovers.ccscoring / constraints / Func.fwd.hh
enzdes / EnzdesMovers.ccscoring / constraints / MultiConstraint.hh
enzdes / EnzdesMovers.ccpack / task / PackerTask.hh
enzdes / EnzdesMovers.ccpose / Pose.hh
enzdes / EnzdesMovers.ccconformation / Residue.hh
enzdes / EnzdesMovers.ccchemical / ResidueTypeSet.fwd.hh
enzdes / EnzdesMovers.ccscoring / rms_util.tmpl.hh
enzdes / EnzdesMovers.ccscoring / ScoreFunction.hh
enzdes / EnzdesMovers.ccscoring / ScoreFunctionFactory.hh
enzdes / EnzdesMovers.ccpack / task / TaskFactory.hh
enzdes / EnzdesMovers.ccpack / task / operation / TaskOperations.hh
enzdes / EnzdesMovers.hhscoring / constraints / AtomPairConstraint.fwd.hh
enzdes / EnzdesMovers.hhscoring / constraints / MultiConstraint.fwd.hh
enzdes / EnzdesMovers.hhpack / task / PackerTask.fwd.hh
enzdes / EnzdesMovers.hhpose / Pose.fwd.hh
enzdes / EnzdesMovers.hhscoring / ScoreFunction.fwd.hh
enzdes / EnzdesMovers.hhio / silent / SilentEnergy.hh
enzdes / EnzdesMovers.hhpack / task / TaskFactory.fwd.hh
toolbox / match_enzdes_util / EnzdesSeqRecoveryCache.ccpose / Pose.hh
toolbox / match_enzdes_util / EnzdesSeqRecoveryCache.ccconformation / Residue.hh
toolbox / match_enzdes_util / EnzdesSeqRecoveryCache.ccid / SequenceMapping.hh
toolbox / match_enzdes_util / EnzdesSeqRecoveryCache.cctypes.hh
toolbox / match_enzdes_util / EnzdesSeqRecoveryCache.hhpose / Pose.fwd.hh
toolbox / match_enzdes_util / EnzdesSeqRecoveryCache.hhid / SequenceMapping.fwd.hh
toolbox / match_enzdes_util / EnzdesSeqRecoveryCache.hhtypes.hh
enzdes / EnzdesTaskOperations.ccpose / datacache / cacheable_observers.hh
enzdes / EnzdesTaskOperations.ccpose / datacache / CacheableObserverType.hh
enzdes / EnzdesTaskOperations.cckinematics / FoldTree.hh
enzdes / EnzdesTaskOperations.ccpack / task / IGEdgeReweightContainer.hh
enzdes / EnzdesTaskOperations.ccpose / datacache / ObserverCache.hh
enzdes / EnzdesTaskOperations.ccpack / task / PackerTask.hh
enzdes / EnzdesTaskOperations.ccpose / Pose.hh
enzdes / EnzdesTaskOperations.ccpack / task / ResfileReader.hh
enzdes / EnzdesTaskOperations.ccconformation / Residue.hh
enzdes / EnzdesTaskOperations.ccpack / dunbrack / RotamerLibrary.hh
enzdes / EnzdesTaskOperations.ccpack / task / operation / TaskOperations.hh
enzdes / EnzdesTaskOperations.cctypes.hh
enzdes / EnzdesTaskOperations.ccpose / symmetry / util.hh
enzdes / EnzdesTaskOperations.ccconformation / symmetry / util.hh
enzdes / EnzdesTaskOperations.ccchemical / VariantType.hh
enzdes / EnzdesTaskOperations.hhpose / Pose.fwd.hh
enzdes / EnzdesTaskOperations.hhpack / task / operation / TaskOperation.hh
enzdes / EnzdesTaskOperations.hhtypes.hh
enzdes / EnzFilters.ccid / AtomID.hh
enzdes / EnzFilters.ccpose / datacache / cacheable_observers.hh
enzdes / EnzFilters.ccpose / datacache / CacheableObserverType.hh
enzdes / EnzFilters.ccpose / metrics / CalculatorFactory.hh
enzdes / EnzFilters.ccconformation / Conformation.hh
enzdes / EnzFilters.ccscoring / constraints / ConstraintSet.hh
enzdes / EnzFilters.ccscoring / Energies.hh
enzdes / EnzFilters.ccpose / metrics / simple_calculators / InterfaceDeltaEnergeticsCalculator.hh
enzdes / EnzFilters.ccpose / metrics / simple_calculators / InterfaceNeighborDefinitionCalculator.hh
enzdes / EnzFilters.ccpose / metrics / simple_calculators / InterfaceSasaDefinitionCalculator.hh
enzdes / EnzFilters.ccpose / datacache / ObserverCache.hh
enzdes / EnzFilters.ccpack / task / PackerTask.hh
enzdes / EnzFilters.ccpose / PDBInfo.hh
enzdes / EnzFilters.ccpose / PDBPoseMap.hh
enzdes / EnzFilters.ccpose / Pose.hh
enzdes / EnzFilters.ccpose / metrics / PoseMetricCalculatorBase.fwd.hh
enzdes / EnzFilters.ccscoring / rms_util.tmpl.hh
enzdes / EnzFilters.ccscoring / ScoreFunction.hh
enzdes / EnzFilters.ccscoring / ScoreFunctionFactory.hh
enzdes / EnzFilters.ccscoring / ScoreType.hh
enzdes / EnzFilters.ccpose / selection.hh
enzdes / EnzFilters.cctypes.hh
enzdes / EnzFilters.hhpose / Pose.fwd.hh
enzdes / EnzFilters.hhscoring / ScoreFunction.hh
enzdes / EnzFilters.hhscoring / ScoreType.hh
enzdes / EnzFilters.hhio / silent / SilentEnergy.hh
enzdes / EnzRepackMinimize.ccscoring / constraints / ConstraintSet.hh
enzdes / EnzRepackMinimize.cckinematics / MoveMap.hh
enzdes / EnzRepackMinimize.ccpack / task / PackerTask.hh
enzdes / EnzRepackMinimize.ccpose / Pose.hh
enzdes / EnzRepackMinimize.ccscoring / ScoreFunction.hh
enzdes / EnzRepackMinimize.ccpack / task / TaskFactory.hh
enzdes / EnzRepackMinimize.ccpack / task / operation / TaskOperations.hh
enzdes / EnzRepackMinimize.hhpack / task / PackerTask.fwd.hh
enzdes / EnzRepackMinimize.hhpose / Pose.fwd.hh
enzdes / EnzRepackMinimize.hhscoring / ScoreFunction.fwd.hh
enzdes / EnzRepackMinimize.hhpack / task / TaskFactory.fwd.hh
enzdes / EnzRepackMinimize.hhtypes.hh
jd2 / archive / EvaluatedArchive.ccscoring / Energies.hh
jd2 / archive / EvaluatedArchive.ccpose / Pose.hh
jd2 / archive / EvaluatedArchive.ccscoring / ScoreFunction.hh
jd2 / archive / EvaluatedArchive.ccio / silent / SilentFileData.hh
jd2 / archive / EvaluatedArchive.hhscoring / constraints / ConstraintSet.fwd.hh
jd2 / archive / EvaluatedArchive.hhpose / Pose.fwd.hh
jd2 / archive / EvaluatedArchive.hhscoring / ResidualDipolarCoupling.fwd.hh
jd2 / archive / EvaluatedArchive.hhio / silent / silent.fwd.hh
jd2 / archive / EvaluatedArchive.hhtypes.hh
simple_filters / EvaluatedTrialMover.ccscoring / Energies.hh
simple_filters / EvaluatedTrialMover.ccpose / Pose.hh
simple_filters / EvaluatedTrialMover.ccio / silent / ProteinSilentStruct.hh
simple_filters / EvaluatedTrialMover.ccio / silent / ProteinSilentStruct.tmpl.hh
simple_filters / EvaluatedTrialMover.ccscoring / ScoreFunction.hh
simple_filters / EvaluatedTrialMover.ccio / silent / SilentStruct.hh
simple_filters / EvaluatedTrialMover.hhpose / Pose.fwd.hh
simple_filters / EvaluatedTrialMover.hhio / silent / silent.fwd.hh
evaluation / EvaluatorFactory.ccscoring / ScoreFunction.fwd.hh
evaluation / EvaluatorFactory.hhpose / Pose.fwd.hh
noesy_assign / Exceptions.hhid / NamedAtomID.hh
loophash / Exceptions.hhtypes.hh
simple_filters / ExpiryFilter.hhpose / Pose.fwd.hh
simple_filters / ExpiryFilter.hhscoring / ScoreFunction.hh
simple_filters / ExpiryFilter.hhtypes.hh
toolbox / pose_metric_calculators / ExplicitWaterUnsatisfiedPolarsCalculator.cckinematics / FoldTree.hh
toolbox / pose_metric_calculators / ExplicitWaterUnsatisfiedPolarsCalculator.ccscoring / hbonds / HBondSet.hh
toolbox / pose_metric_calculators / ExplicitWaterUnsatisfiedPolarsCalculator.cckinematics / Jump.hh
toolbox / pose_metric_calculators / ExplicitWaterUnsatisfiedPolarsCalculator.cckinematics / MoveMap.hh
toolbox / pose_metric_calculators / ExplicitWaterUnsatisfiedPolarsCalculator.ccpose / Pose.hh
toolbox / pose_metric_calculators / ExplicitWaterUnsatisfiedPolarsCalculator.ccconformation / Residue.hh
toolbox / pose_metric_calculators / ExplicitWaterUnsatisfiedPolarsCalculator.ccconformation / ResidueFactory.hh
toolbox / pose_metric_calculators / ExplicitWaterUnsatisfiedPolarsCalculator.ccchemical / ResidueTypeSet.hh
toolbox / pose_metric_calculators / ExplicitWaterUnsatisfiedPolarsCalculator.ccscoring / ScoreFunction.hh
toolbox / pose_metric_calculators / ExplicitWaterUnsatisfiedPolarsCalculator.hhpose / Pose.fwd.hh
toolbox / pose_metric_calculators / ExplicitWaterUnsatisfiedPolarsCalculator.hhpose / metrics / PoseMetricCalculatorBase.hh
toolbox / pose_metric_calculators / ExplicitWaterUnsatisfiedPolarsCalculator.hhscoring / ScoreFunction.fwd.hh
toolbox / pose_metric_calculators / ExplicitWaterUnsatisfiedPolarsCalculator.hhtypes.hh
simple_moves / ExtendedPoseMover.ccpose / annotated_sequence.hh
simple_moves / ExtendedPoseMover.cckinematics / Jump.hh
simple_moves / ExtendedPoseMover.ccpose / Pose.hh
simple_moves / ExtendedPoseMover.ccconformation / Residue.hh
simple_moves / ExtendedPoseMover.hhpose / Pose.fwd.hh
star / Extender.ccpose / annotated_sequence.hh
star / Extender.ccconformation / Conformation.hh
star / Extender.cckinematics / FoldTree.hh
star / Extender.ccpose / Pose.hh
star / Extender.ccconformation / Residue.hh
star / Extender.ccscoring / rms_util.hh
star / Extender.ccfragment / SecondaryStructure.hh
star / Extender.ccsequence / SequenceAlignment.hh
star / Extender.ccid / SequenceMapping.hh
star / Extender.ccconformation / util.hh
star / Extender.hhpose / Pose.fwd.hh
star / Extender.hhfragment / SecondaryStructure.hh
star / Extender.hhsequence / SequenceAlignment.fwd.hh
simple_filters / ExternalEvaluator.ccpose / Pose.hh
simple_filters / ExternalEvaluator.ccio / silent / SilentStruct.hh
simple_filters / ExternalEvaluator.hhpose / Pose.fwd.hh
simple_filters / ExternalEvaluator.hhio / silent / silent.fwd.hh
toolbox / match_enzdes_util / ExternalGeomSampler.hhtypes.hh
simple_filters / ExtraScoreEvaluatorCreator.ccchemical / ResidueType.hh
simple_filters / ExtraScoreEvaluatorCreator.ccscoring / ScoreFunction.hh
simple_filters / ExtraScoreEvaluatorCreator.ccscoring / ScoreFunctionFactory.hh
simple_filters / ExtraScoreEvaluatorCreator.ccio / silent / silent.fwd.hh
simple_filters / ExtraScoreEvaluatorCreator.ccio / silent / SilentStruct.hh
simple_filters / ExtraScoreEvaluatorCreator.ccscoring / constraints / util.hh
simple_filters / ExtraScoreEvaluatorCreator.hhtypes.hh
comparative_modeling / ExtraThreadingMover.ccid / AtomID.hh
comparative_modeling / ExtraThreadingMover.ccid / AtomID_Map.hh
comparative_modeling / ExtraThreadingMover.ccid / AtomID_Mask.fwd.hh
comparative_modeling / ExtraThreadingMover.ccpose / PDBInfo.hh
comparative_modeling / ExtraThreadingMover.ccpose / Pose.hh
comparative_modeling / ExtraThreadingMover.ccconformation / Residue.fwd.hh
comparative_modeling / ExtraThreadingMover.ccchemical / ResidueTypeSet.hh
comparative_modeling / ExtraThreadingMover.ccscoring / rms_util.hh
comparative_modeling / ExtraThreadingMover.ccsequence / ScoringScheme.fwd.hh
comparative_modeling / ExtraThreadingMover.ccsequence / Sequence.hh
comparative_modeling / ExtraThreadingMover.ccsequence / SequenceAlignment.hh
comparative_modeling / ExtraThreadingMover.ccid / SequenceMapping.hh
comparative_modeling / ExtraThreadingMover.ccsequence / SimpleScoringScheme.hh
comparative_modeling / ExtraThreadingMover.ccsequence / SWAligner.hh
comparative_modeling / ExtraThreadingMover.cctypes.hh
comparative_modeling / ExtraThreadingMover.ccsequence / util.hh
comparative_modeling / ExtraThreadingMover.ccpose / util.hh
comparative_modeling / ExtraThreadingMover.ccpose / util.tmpl.hh
comparative_modeling / ExtraThreadingMover.hhpose / Pose.hh
comparative_modeling / ExtraThreadingMover.hhsequence / SequenceAlignment.hh
comparative_modeling / ExtraThreadingMover.hhid / SequenceMapping.hh
comparative_modeling / ExtraThreadingMover.hhtypes.hh
frag_picker / Faraggi_SA.hhtypes.hh
loops / loop_closure / ccd / FASelectSlidingWindowLoopClosure.ccfragment / BBTorsionSRFD.hh
loops / loop_closure / ccd / FASelectSlidingWindowLoopClosure.ccfragment / FragCache.hh
loops / loop_closure / ccd / FASelectSlidingWindowLoopClosure.ccfragment / FragData.hh
loops / loop_closure / ccd / FASelectSlidingWindowLoopClosure.ccfragment / FragSet.hh
loops / loop_closure / ccd / FASelectSlidingWindowLoopClosure.ccfragment / Frame.hh
loops / loop_closure / ccd / FASelectSlidingWindowLoopClosure.ccfragment / FrameIterator.hh
loops / loop_closure / ccd / FASelectSlidingWindowLoopClosure.ccfragment / FrameIteratorWorker_.hh
loops / loop_closure / ccd / FASelectSlidingWindowLoopClosure.ccfragment / FrameList.hh
loops / loop_closure / ccd / FASelectSlidingWindowLoopClosure.cckinematics / MoveMap.hh
loops / loop_closure / ccd / FASelectSlidingWindowLoopClosure.ccpose / Pose.hh
loops / loop_closure / ccd / FASelectSlidingWindowLoopClosure.ccscoring / ScoreFunction.hh
loops / loop_closure / ccd / FASelectSlidingWindowLoopClosure.ccscoring / ScoreFunctionFactory.hh
loops / loop_closure / ccd / FASelectSlidingWindowLoopClosure.ccpose / util.hh
loops / loop_closure / ccd / FASelectSlidingWindowLoopClosure.hhfragment / FragSet.fwd.hh
loops / loop_closure / ccd / FASelectSlidingWindowLoopClosure.hhkinematics / MoveMap.fwd.hh
loops / loop_closure / ccd / FASelectSlidingWindowLoopClosure.hhfragment / OrderedFragSet.hh
loops / loop_closure / ccd / FASelectSlidingWindowLoopClosure.hhpose / Pose.fwd.hh
loops / loop_closure / ccd / FASelectSlidingWindowLoopClosure.hhscoring / ScoreFunction.hh
loops / loop_closure / ccd / FASelectSlidingWindowLoopClosure.hhtypes.hh
inputter / FastaInputter.ccpose / annotated_sequence.hh
inputter / FastaInputter.ccchemical / ChemicalManager.hh
inputter / FastaInputter.ccimport_pose / import_pose.hh
inputter / FastaInputter.ccpose / Pose.hh
inputter / FastaInputter.ccpose / util.hh
inputter / FastaInputter.ccsequence / util.hh
inputter / FastaInputter.hhpose / Pose.fwd.hh
inputter / FastaInputter.hhtypes.hh
loophash / FastGapMover.ccchemical / ChemicalManager.fwd.hh
loophash / FastGapMover.cckinematics / FoldTree.hh
loophash / FastGapMover.cckinematics / Jump.hh
loophash / FastGapMover.ccpose / Pose.hh
loophash / FastGapMover.ccio / pdb / pose_io.hh
loophash / FastGapMover.ccconformation / Residue.hh
loophash / FastGapMover.ccutil / SwitchResidueTypeSet.hh
loophash / FastGapMover.hhpose / Pose.fwd.hh
relax / FastRelax.ccchemical / ChemicalManager.fwd.hh
relax / FastRelax.ccscoring / constraints / ConstraintSet.hh
relax / FastRelax.ccscoring / constraints / HarmonicFunc.hh
relax / FastRelax.cckinematics / MoveMap.hh
relax / FastRelax.ccpack / task / PackerTask.hh
relax / FastRelax.ccpose / Pose.hh
relax / FastRelax.ccio / pdb / pose_io.hh
relax / FastRelax.ccscoring / rms_util.hh
relax / FastRelax.ccscoring / ScoreFunction.hh
relax / FastRelax.ccscoring / ScoreType.hh
relax / FastRelax.ccio / silent / SilentStruct.hh
relax / FastRelax.ccio / silent / SilentStructFactory.hh
relax / FastRelax.ccutil / SwitchResidueTypeSet.hh
relax / FastRelax.ccpack / task / TaskFactory.hh
relax / FastRelax.ccpose / symmetry / util.hh
relax / FastRelax.ccpose / util.hh
relax / FastRelax.cckinematics / util.hh
relax / FastRelax.hhscoring / constraints / ConstraintSet.hh
relax / FastRelax.hhkinematics / MoveMap.fwd.hh
relax / FastRelax.hhpose / Pose.fwd.hh
relax / FastRelax.hhscoring / ScoreFunction.fwd.hh
relax / FastRelax.hhio / silent / silent.fwd.hh
protein_interface_design / movers / FavorNativeResiduePreCycle.hhpose / Pose.fwd.hh
protein_interface_design / movers / FavorNativeResiduePreCycle.hhtypes.hh
protein_interface_design / movers / FavorNonNativeResiduePreCycle.hhpose / Pose.fwd.hh
protein_interface_design / movers / FavorNonNativeResiduePreCycle.hhtypes.hh
simple_moves / FavorSequenceProfile.ccconformation / Conformation.hh
simple_moves / FavorSequenceProfile.ccimport_pose / import_pose.hh
simple_moves / FavorSequenceProfile.ccpose / Pose.hh
simple_moves / FavorSequenceProfile.ccscoring / ScoreFunction.hh
simple_moves / FavorSequenceProfile.ccsequence / Sequence.hh
simple_moves / FavorSequenceProfile.ccsequence / SequenceProfile.hh
simple_moves / FavorSequenceProfile.ccscoring / constraints / SequenceProfileConstraint.hh
simple_moves / FavorSequenceProfile.ccsequence / util.hh
simple_moves / FavorSequenceProfile.hhpose / Pose.fwd.hh
simple_moves / FavorSequenceProfile.hhsequence / Sequence.fwd.hh
simple_moves / FavorSequenceProfile.hhsequence / SequenceProfile.hh
simple_moves / FavorSequenceProfile.hhtypes.hh
features / FeaturesReporter.ccpose / datacache / CacheableDataType.hh
features / FeaturesReporter.ccpose / PDBInfo.hh
features / FeaturesReporter.ccpose / Pose.hh
features / FeaturesReporter.hhpose / Pose.fwd.hh
features / FeaturesReporter.hhtypes.hh
features / FeaturesReporterFactory.ccscoring / ScoreFunction.fwd.hh
features / FeaturesReporterFactory.hhpose / Pose.fwd.hh
fibril / fibril_util.ccid / AtomID.hh
fibril / fibril_util.ccid / AtomID_Map.hh
fibril / fibril_util.cckinematics / Edge.hh
fibril / fibril_util.cckinematics / FoldTree.hh
fibril / fibril_util.ccimport_pose / import_pose.hh
fibril / fibril_util.ccpose / Pose.hh
fibril / fibril_util.ccscoring / rms_util.hh
fibril / fibril_util.ccconformation / symmetry / SymmData.hh
fibril / fibril_util.ccpose / util.hh
fibril / fibril_util.ccpose / symmetry / util.hh
fibril / fibril_util.ccpose / util.tmpl.hh
fibril / fibril_util.hhconformation / Conformation.fwd.hh
fibril / fibril_util.hhkinematics / Jump.hh
fibril / fibril_util.hhpose / Pose.fwd.hh
fibril / fibril_util.hhconformation / symmetry / SymmData.fwd.hh
topology_broker / FibrilModelingClaimer.ccchemical / ChemicalManager.hh
topology_broker / FibrilModelingClaimer.ccconformation / Conformation.hh
topology_broker / FibrilModelingClaimer.cckinematics / FoldTree.hh
topology_broker / FibrilModelingClaimer.ccimport_pose / import_pose.hh
topology_broker / FibrilModelingClaimer.ccpose / Pose.hh
topology_broker / FibrilModelingClaimer.ccconformation / symmetry / util.hh
topology_broker / FibrilModelingClaimer.ccpose / symmetry / util.hh
topology_broker / FibrilModelingClaimer.hhpose / Pose.hh
topology_broker / FibrilModelingClaimer.hhconformation / symmetry / SymmetryInfo.hh
simple_filters / FileExistFilter.hhpose / Pose.fwd.hh
simple_filters / FileExistFilter.hhscoring / ScoreFunction.hh
simple_filters / FileExistFilter.hhtypes.hh
jd2 / FileJobOutputter.ccio / raw_data / ScoreFileData.hh
jd2 / FileJobOutputter.hhpose / Pose.fwd.hh
simple_filters / FileRemoveFilter.hhpose / Pose.fwd.hh
simple_filters / FileRemoveFilter.hhscoring / ScoreFunction.hh
simple_filters / FileRemoveFilter.hhtypes.hh
jd2 / FileSystemJobDistributor.hhtypes.hh
filters / Filter.ccpose / util.hh
filters / Filter.hhio / serialization / PipeMap.fwd.hh
filters / Filter.hhpose / Pose.fwd.hh
filters / Filter.hhscoring / ScoreFunction.fwd.hh
filters / Filter.hhpack / task / operation / TaskOperation.hh
filters / Filter.hhtypes.hh
filters / FilterFactory.hhpose / Pose.fwd.hh
moves / FilterMover.ccpose / Pose.hh
moves / FilterMover.hhpose / Pose.fwd.hh
moves / FilterMover.hhtypes.hh
protein_interface_design / filters / FilterScan.ccchemical / AA.hh
protein_interface_design / filters / FilterScan.ccconformation / Conformation.hh
protein_interface_design / filters / FilterScan.ccpack / pack_rotamers.hh
protein_interface_design / filters / FilterScan.ccpack / task / PackerTask.hh
protein_interface_design / filters / FilterScan.ccpose / PDBInfo.hh
protein_interface_design / filters / FilterScan.ccpose / Pose.hh
protein_interface_design / filters / FilterScan.ccconformation / Residue.hh
protein_interface_design / filters / FilterScan.ccchemical / ResidueType.fwd.hh
protein_interface_design / filters / FilterScan.ccchemical / ResidueType.hh
protein_interface_design / filters / FilterScan.ccscoring / ScoreFunction.hh
protein_interface_design / filters / FilterScan.ccpack / task / TaskFactory.hh
protein_interface_design / filters / FilterScan.ccpose / symmetry / util.hh
protein_interface_design / filters / FilterScan.hhchemical / AA.hh
protein_interface_design / filters / FilterScan.hhpose / Pose.fwd.hh
protein_interface_design / filters / FilterScan.hhscoring / ScoreFunction.fwd.hh
protein_interface_design / filters / FilterScan.hhpack / task / TaskFactory.fwd.hh
flxbb / FilterStructs.ccscoring / packstat / compute_sasa.hh
flxbb / FilterStructs.ccpose / Pose.hh
flxbb / FilterStructs.hhpose / Pose.fwd.hh
flxbb / FilterStructs.hhtypes.hh
ligand_docking / FinalMinimizer.cckinematics / FoldTree.hh
ligand_docking / FinalMinimizer.ccoptimization / MinimizerOptions.hh
ligand_docking / FinalMinimizer.cckinematics / MoveMap.hh
ligand_docking / FinalMinimizer.ccpose / Pose.hh
ligand_docking / FinalMinimizer.ccscoring / ScoreFunction.hh
ligand_docking / FinalMinimizer.cctypes.hh
ligand_docking / FinalMinimizer.hhscoring / ScoreFunction.fwd.hh
pockets / Fingerprint.ccid / AtomID_Map.hh
pockets / Fingerprint.ccchemical / AtomType.hh
pockets / Fingerprint.ccconformation / Conformation.hh
pockets / Fingerprint.ccpose / Pose.hh
pockets / Fingerprint.ccconformation / Residue.hh
pockets / Fingerprint.cctypes.hh
pockets / Fingerprint.hhpose / Pose.hh
pockets / Fingerprint.hhconformation / Residue.hh
pockets / Fingerprint.hhtypes.hh
pockets / FingerprintMultifunc.hhoptimization / Multifunc.hh
pockets / FingerprintMultifunc.hhoptimization / types.hh
genetic_algorithm / FitnessFunction.hhtypes.hh
flexpack / interaction_graph / FlexbbIGFactory.hhpack / task / PackerTask.fwd.hh
flexpack / interaction_graph / FlexbbIGFactory.hhpose / Pose.fwd.hh
flexpack / interaction_graph / FlexbbIGFactory.hhscoring / ScoreFunction.fwd.hh
flexpack / interaction_graph / FlexbbInteractionGraph.ccconformation / Residue.hh
flexpack / interaction_graph / FlexbbInteractionGraph.hhpack / interaction_graph / InteractionGraphBase.hh
flexpack / rotamer_set / FlexbbRotamerSet.ccgraph / Graph.hh
flexpack / rotamer_set / FlexbbRotamerSet.ccpack / task / PackerTask.hh
flexpack / rotamer_set / FlexbbRotamerSet.ccpose / Pose.hh
flexpack / rotamer_set / FlexbbRotamerSet.ccconformation / Residue.hh
flexpack / rotamer_set / FlexbbRotamerSet.ccscoring / ScoreFunction.hh
flexpack / rotamer_set / FlexbbRotamerSet.hhpack / rotamer_set / RotamerSet_.hh
flexpack / rotamer_set / FlexbbRotamerSets.ccconformation / AbstractRotamerTrie.hh
flexpack / rotamer_set / FlexbbRotamerSets.ccscoring / Energies.hh
flexpack / rotamer_set / FlexbbRotamerSets.ccfragment / Frame.hh
flexpack / rotamer_set / FlexbbRotamerSets.ccgraph / Graph.hh
flexpack / rotamer_set / FlexbbRotamerSets.ccscoring / methods / LongRangeTwoBodyEnergy.hh
flexpack / rotamer_set / FlexbbRotamerSets.ccscoring / LREnergyContainer.hh
flexpack / rotamer_set / FlexbbRotamerSets.ccpack / packer_neighbors.hh
flexpack / rotamer_set / FlexbbRotamerSets.ccpack / task / PackerTask.hh
flexpack / rotamer_set / FlexbbRotamerSets.ccpose / Pose.hh
flexpack / rotamer_set / FlexbbRotamerSets.ccio / pdb / pose_io.hh
flexpack / rotamer_set / FlexbbRotamerSets.ccconformation / Residue.hh
flexpack / rotamer_set / FlexbbRotamerSets.ccpack / rotamer_set / RotamerSets.hh
flexpack / rotamer_set / FlexbbRotamerSets.ccscoring / ScoreFunction.hh
flexpack / rotamer_set / FlexbbRotamerSets.hhfragment / Frame.fwd.hh
flexpack / rotamer_set / FlexbbRotamerSets.hhgraph / Graph.fwd.hh
flexpack / rotamer_set / FlexbbRotamerSets.hhscoring / methods / LongRangeTwoBodyEnergy.fwd.hh
flexpack / rotamer_set / FlexbbRotamerSets.hhpack / task / PackerTask.fwd.hh
flexpack / rotamer_set / FlexbbRotamerSets.hhpose / Pose.fwd.hh
flexpack / rotamer_set / FlexbbRotamerSets.hhconformation / Residue.fwd.hh
flexpack / rotamer_set / FlexbbRotamerSets.hhpack / rotamer_set / RotamerSetsBase.hh
flexpack / rotamer_set / FlexbbRotamerSets.hhscoring / ScoreFunction.fwd.hh
flexpack / rotamer_set / FlexbbRotamerSets.hhtypes.hh
flexpack / annealer / FlexbbSimAnnealer.hhpack / annealer / SimAnnealerBase.hh
flexpack / interaction_graph / FlexbbSparseMatrixIndex.hhpack / interaction_graph / SparseMatrixIndex.hh
flexpack / FlexPacker.ccscoring / Energies.hh
flexpack / FlexPacker.ccscoring / methods / EnergyMethodOptions.hh
flexpack / FlexPacker.ccfragment / Frame.hh
flexpack / FlexPacker.ccgraph / Graph.hh
flexpack / FlexPacker.ccscoring / hbonds / HBondOptions.hh
flexpack / FlexPacker.ccpack / task / PackerTask.hh
flexpack / FlexPacker.ccpose / Pose.hh
flexpack / FlexPacker.ccconformation / Residue.hh
flexpack / FlexPacker.ccscoring / ScoreFunction.hh
flexpack / FlexPacker.ccpack / task / TaskFactory.hh
flexpack / FlexPacker.hhfragment / Frame.fwd.hh
flexpack / FlexPacker.hhpack / task / PackerTask.fwd.hh
flexpack / FlexPacker.hhscoring / ScoreFunction.fwd.hh
flexpack / FlexPacker.hhpack / task / TaskFactory.fwd.hh
flexpep_docking / FlexPepDockingAbInitio.ccchemical / ChemicalManager.hh
flexpep_docking / FlexPepDockingAbInitio.ccfragment / ConstantLengthFragSet.hh
flexpep_docking / FlexPepDockingAbInitio.ccfragment / FragSet.hh
flexpep_docking / FlexPepDockingAbInitio.cckinematics / MoveMap.hh
flexpep_docking / FlexPepDockingAbInitio.ccconformation / ResidueFactory.hh
flexpep_docking / FlexPepDockingAbInitio.ccchemical / ResidueTypeSet.hh
flexpep_docking / FlexPepDockingAbInitio.ccscoring / ScoreFunction.hh
flexpep_docking / FlexPepDockingAbInitio.cctypes.hh
flexpep_docking / FlexPepDockingAbInitio.ccpose / util.hh
flexpep_docking / FlexPepDockingAbInitio.ccchemical / VariantType.hh
flexpep_docking / FlexPepDockingAbInitio.hhfragment / ConstantLengthFragSet.fwd.hh
flexpep_docking / FlexPepDockingAbInitio.hhkinematics / MoveMap.fwd.hh
flexpep_docking / FlexPepDockingAbInitio.hhpose / Pose.fwd.hh
flexpep_docking / FlexPepDockingAbInitio.hhscoring / ScoreFunction.fwd.hh
flexpep_docking / FlexPepDockingFlags.ccpose / PDBInfo.hh
flexpep_docking / FlexPepDockingFlags.ccpose / Pose.hh
flexpep_docking / FlexPepDockingFlags.ccconformation / Residue.hh
flexpep_docking / FlexPepDockingFlags.cctypes.hh
flexpep_docking / FlexPepDockingFlags.hhpose / Pose.fwd.hh
flexpep_docking / FlexPepDockingLowRes.ccchemical / ChemicalManager.fwd.hh
flexpep_docking / FlexPepDockingLowRes.ccfragment / FragSet.hh
flexpep_docking / FlexPepDockingLowRes.cckinematics / MoveMap.hh
flexpep_docking / FlexPepDockingLowRes.ccscoring / ScoreFunction.hh
flexpep_docking / FlexPepDockingLowRes.cctypes.hh
flexpep_docking / FlexPepDockingLowRes.hhkinematics / MoveMap.fwd.hh
flexpep_docking / FlexPepDockingLowRes.hhscoring / ScoreFunction.fwd.hh
flexpep_docking / FlexPepDockingPoseMetrics.ccpose / metrics / CalculatorFactory.hh
flexpep_docking / FlexPepDockingPoseMetrics.ccscoring / Energies.hh
flexpep_docking / FlexPepDockingPoseMetrics.ccpose / Pose.hh
flexpep_docking / FlexPepDockingPoseMetrics.ccconformation / Residue.hh
flexpep_docking / FlexPepDockingPoseMetrics.ccscoring / rms_util.hh
flexpep_docking / FlexPepDockingPoseMetrics.ccscoring / rms_util.tmpl.hh
flexpep_docking / FlexPepDockingPoseMetrics.ccpose / metrics / simple_calculators / SasaCalculator.hh
flexpep_docking / FlexPepDockingPoseMetrics.ccscoring / ScoreFunction.hh
flexpep_docking / FlexPepDockingPoseMetrics.ccscoring / ScoreType.hh
flexpep_docking / FlexPepDockingPoseMetrics.cctypes.hh
flexpep_docking / FlexPepDockingPoseMetrics.hhconformation / Residue.fwd.hh
flexpep_docking / FlexPepDockingPoseMetrics.hhscoring / ScoreFunction.fwd.hh
flexpep_docking / FlexPepDockingPoseMetrics.hhtypes.hh
flexpep_docking / FlexPepDockingProtocol.ccchemical / AA.hh
flexpep_docking / FlexPepDockingProtocol.ccchemical / ChemicalManager.hh
flexpep_docking / FlexPepDockingProtocol.ccconformation / Conformation.hh
flexpep_docking / FlexPepDockingProtocol.ccfragment / ConstantLengthFragSet.hh
flexpep_docking / FlexPepDockingProtocol.ccscoring / constraints / ConstraintSet.hh
flexpep_docking / FlexPepDockingProtocol.ccscoring / constraints / CoordinateConstraint.hh
flexpep_docking / FlexPepDockingProtocol.cckinematics / FoldTree.hh
flexpep_docking / FlexPepDockingProtocol.ccfragment / FragSet.hh
flexpep_docking / FlexPepDockingProtocol.ccscoring / constraints / HarmonicFunc.hh
flexpep_docking / FlexPepDockingProtocol.ccimport_pose / import_pose.hh
flexpep_docking / FlexPepDockingProtocol.cckinematics / MoveMap.hh
flexpep_docking / FlexPepDockingProtocol.ccpack / task / operation / NoRepackDisulfides.hh
flexpep_docking / FlexPepDockingProtocol.ccpack / task / PackerTask.hh
flexpep_docking / FlexPepDockingProtocol.ccpose / PDBInfo.hh
flexpep_docking / FlexPepDockingProtocol.ccpose / Pose.hh
flexpep_docking / FlexPepDockingProtocol.ccio / pdb / pose_io.hh
flexpep_docking / FlexPepDockingProtocol.ccconformation / ResidueFactory.hh
flexpep_docking / FlexPepDockingProtocol.ccchemical / ResidueTypeSet.hh
flexpep_docking / FlexPepDockingProtocol.ccscoring / rms_util.hh
flexpep_docking / FlexPepDockingProtocol.ccscoring / rms_util.tmpl.hh
flexpep_docking / FlexPepDockingProtocol.ccscoring / ScoreFunction.hh
flexpep_docking / FlexPepDockingProtocol.ccscoring / ScoreFunctionFactory.hh
flexpep_docking / FlexPepDockingProtocol.ccscoring / ScoreType.hh
flexpep_docking / FlexPepDockingProtocol.ccpack / task / TaskFactory.hh
flexpep_docking / FlexPepDockingProtocol.ccpack / task / operation / TaskOperations.hh
flexpep_docking / FlexPepDockingProtocol.cctypes.hh
flexpep_docking / FlexPepDockingProtocol.ccpack / rotamer_set / UnboundRotamersOperation.hh
flexpep_docking / FlexPepDockingProtocol.ccscoring / constraints / util.hh
flexpep_docking / FlexPepDockingProtocol.hhkinematics / MoveMap.fwd.hh
flexpep_docking / FlexPepDockingProtocol.hhpack / task / PackerTask.fwd.hh
flexpep_docking / FlexPepDockingProtocol.hhscoring / ScoreFunction.fwd.hh
flexpep_docking / FlexPepDockingProtocol.hhpack / task / TaskFactory.fwd.hh
flexpep_docking / FlexPepDockingProtocol.hhpack / task / operation / TaskOperations.fwd.hh
flexpep_docking / FlexPepDockingProtocol.hhtypes.hh
noesy_assign / FloatingResonance.ccchemical / AA.hh
noesy_assign / FloatingResonance.ccid / NamedAtomID.hh
noesy_assign / FloatingResonance.hhchemical / AA.hh
noesy_assign / FloatingResonance.hhid / NamedAtomID.hh
noesy_assign / FloatingResonance.hhtypes.hh
floppy_tail / FloppyTail_publication.ccconformation / Conformation.hh
floppy_tail / FloppyTail_publication.ccpose / PDBInfo.hh
floppy_tail / FloppyTail_publication.ccpose / Pose.hh
floppy_tail / FloppyTail_publication.ccscoring / ScoreFunction.hh
floppy_tail / FloppyTail_publication.hhpose / Pose.fwd.hh
floppy_tail / FloppyTail_publication.hhscoring / ScoreFunction.fwd.hh
floppy_tail / FloppyTailMover.ccpose / metrics / CalculatorFactory.hh
floppy_tail / FloppyTailMover.ccchemical / ChemicalManager.fwd.hh
floppy_tail / FloppyTailMover.ccfragment / ConstantLengthFragSet.hh
floppy_tail / FloppyTailMover.cckinematics / FoldTree.hh
floppy_tail / FloppyTailMover.cckinematics / MoveMap.hh
floppy_tail / FloppyTailMover.ccpose / PDBInfo.hh
floppy_tail / FloppyTailMover.ccpose / PDBPoseMap.hh
floppy_tail / FloppyTailMover.ccpose / Pose.hh
floppy_tail / FloppyTailMover.ccscoring / ScoreFunction.hh
floppy_tail / FloppyTailMover.ccscoring / ScoreFunctionFactory.hh
floppy_tail / FloppyTailMover.ccpack / task / TaskFactory.hh
floppy_tail / FloppyTailMover.ccpack / task / operation / TaskOperations.hh
floppy_tail / FloppyTailMover.ccscoring / constraints / util.hh
floppy_tail / FloppyTailMover.cckinematics / util.hh
floppy_tail / FloppyTailMover.hhfragment / ConstantLengthFragSet.fwd.hh
floppy_tail / FloppyTailMover.hhkinematics / FoldTree.fwd.hh
floppy_tail / FloppyTailMover.hhkinematics / MoveMap.fwd.hh
floppy_tail / FloppyTailMover.hhpose / Pose.fwd.hh
floppy_tail / FloppyTailMover.hhscoring / ScoreFunction.fwd.hh
floppy_tail / FloppyTailMover.hhpack / task / TaskFactory.fwd.hh
flxbb / FlxbbDesign.ccchemical / ChemicalManager.fwd.hh
flxbb / FlxbbDesign.ccscoring / packstat / compute_sasa.hh
flxbb / FlxbbDesign.ccscoring / constraints / ConstraintSet.hh
flxbb / FlxbbDesign.cckinematics / MoveMap.hh
flxbb / FlxbbDesign.ccpack / task / PackerTask.hh
flxbb / FlxbbDesign.ccpose / Pose.hh
flxbb / FlxbbDesign.ccscoring / ScoreFunction.hh
flxbb / FlxbbDesign.ccscoring / ScoreFunctionFactory.hh
flxbb / FlxbbDesign.ccutil / SwitchResidueTypeSet.hh
flxbb / FlxbbDesign.ccpack / task / TaskFactory.hh
flxbb / FlxbbDesign.ccpose / util.hh
flxbb / FlxbbDesign.hhkinematics / MoveMap.fwd.hh
flxbb / FlxbbDesign.hhpack / task / PackerTask.hh
flxbb / FlxbbDesign.hhpose / Pose.fwd.hh
flxbb / FlxbbDesign.hhscoring / ScoreFunction.fwd.hh
flxbb / FlxbbDesign.hhpack / task / operation / TaskOperation.fwd.hh
flxbb / FlxbbDesign.hhtypes.hh
flxbb / FlxbbDesign_main.ccscoring / ScoreFunction.hh
flxbb / FlxbbDesign_main.ccscoring / ScoreFunctionFactory.hh
flxbb / FlxbbDesign_main.ccscoring / constraints / util.hh
forge / methods / fold_tree_functions.ccconformation / Conformation.hh
forge / methods / fold_tree_functions.ccgraph / DisjointSets.hh
forge / methods / fold_tree_functions.cckinematics / Edge.hh
forge / methods / fold_tree_functions.cckinematics / FoldTree.hh
forge / methods / fold_tree_functions.cckinematics / MoveMap.hh
forge / methods / fold_tree_functions.ccpose / Pose.hh
forge / methods / fold_tree_functions.ccconformation / Residue.hh
forge / methods / fold_tree_functions.cctypes.hh
forge / methods / fold_tree_functions.ccpose / util.hh
forge / methods / fold_tree_functions.ccchemical / VariantType.hh
forge / methods / fold_tree_functions.hhkinematics / Edge.hh
forge / methods / fold_tree_functions.hhkinematics / FoldTree.hh
forge / methods / fold_tree_functions.hhkinematics / MoveMap.fwd.hh
forge / methods / fold_tree_functions.hhpose / Pose.fwd.hh
forge / methods / fold_tree_functions.hhtypes.hh
topology_broker / FoldandDockClaimer.ccchemical / AtomType.hh
topology_broker / FoldandDockClaimer.ccconformation / Conformation.hh
topology_broker / FoldandDockClaimer.cckinematics / FoldTree.hh
topology_broker / FoldandDockClaimer.ccpose / symmetry / util.hh
topology_broker / FoldandDockClaimer.hhpose / Pose.hh
topology_broker / FoldandDockClaimer.hhscoring / ScoreFunction.fwd.hh
topology_broker / FoldandDockClaimer.hhtypes.hh
abinitio / FoldConstraints.ccscoring / constraints / ConstraintSet.hh
abinitio / FoldConstraints.ccscoring / Energies.hh
abinitio / FoldConstraints.ccfragment / FragSet.hh
abinitio / FoldConstraints.cckinematics / MoveMap.hh
abinitio / FoldConstraints.ccpose / Pose.hh
abinitio / FoldConstraints.ccscoring / ScoreType.hh
abinitio / FoldConstraints.cctypes.hh
abinitio / FoldConstraints.hhkinematics / FoldTree.fwd.hh
abinitio / FoldConstraints.hhkinematics / MoveMap.fwd.hh
abinitio / FoldConstraints.hhpose / Pose.fwd.hh
abinitio / FoldConstraints.hhscoring / ScoreFunction.fwd.hh
abinitio / FoldConstraints.hhscoring / ScoreType.hh
abinitio / FoldConstraints.hhkinematics / ShortestPathInFoldTree.fwd.hh
abinitio / FoldConstraints.hhtypes.hh
noesy_assign / FoldResonance.hhtypes.hh
loops / FoldTreeFromLoopsWrapper.cckinematics / FoldTree.hh
loops / FoldTreeFromLoopsWrapper.ccpose / Pose.hh
hybridization / FoldTreeHybridize.ccid / AtomID.hh
hybridization / FoldTreeHybridize.ccid / AtomID_Map.hh
hybridization / FoldTreeHybridize.ccscoring / constraints / AtomPairConstraint.hh
hybridization / FoldTreeHybridize.ccscoring / constraints / BoundConstraint.hh
hybridization / FoldTreeHybridize.ccconformation / Conformation.hh
hybridization / FoldTreeHybridize.ccfragment / ConstantLengthFragSet.hh
hybridization / FoldTreeHybridize.ccscoring / constraints / ConstraintIO.hh
hybridization / FoldTreeHybridize.ccscoring / constraints / ConstraintSet.hh
hybridization / FoldTreeHybridize.ccscoring / methods / EnergyMethodOptions.hh
hybridization / FoldTreeHybridize.ccfragment / Frame.hh
hybridization / FoldTreeHybridize.ccfragment / FrameIterator.hh
hybridization / FoldTreeHybridize.ccimport_pose / import_pose.hh
hybridization / FoldTreeHybridize.ccutil / kinematics_util.hh
hybridization / FoldTreeHybridize.cckinematics / MoveMap.hh
hybridization / FoldTreeHybridize.ccpack / task / PackerTask.hh
hybridization / FoldTreeHybridize.ccpose / PDBInfo.hh
hybridization / FoldTreeHybridize.ccpose / Pose.fwd.hh
hybridization / FoldTreeHybridize.ccpose / Pose.hh
hybridization / FoldTreeHybridize.ccconformation / Residue.hh
hybridization / FoldTreeHybridize.ccconformation / ResidueFactory.hh
hybridization / FoldTreeHybridize.ccchemical / ResidueTypeSet.hh
hybridization / FoldTreeHybridize.ccscoring / rms_util.hh
hybridization / FoldTreeHybridize.ccscoring / ScoreFunction.hh
hybridization / FoldTreeHybridize.ccscoring / ScoreFunctionFactory.hh
hybridization / FoldTreeHybridize.ccfragment / SecondaryStructure.hh
hybridization / FoldTreeHybridize.ccsequence / Sequence.hh
hybridization / FoldTreeHybridize.ccscoring / dssp / StrandPairing.hh
hybridization / FoldTreeHybridize.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
hybridization / FoldTreeHybridize.ccconformation / symmetry / SymmetricConformation.hh
hybridization / FoldTreeHybridize.ccconformation / symmetry / SymmetryInfo.hh
hybridization / FoldTreeHybridize.ccpose / symmetry / util.hh
hybridization / FoldTreeHybridize.ccfragment / util.hh
hybridization / FoldTreeHybridize.ccconformation / util.hh
hybridization / FoldTreeHybridize.ccsequence / util.hh
hybridization / FoldTreeHybridize.ccpose / util.hh
hybridization / FoldTreeHybridize.ccchemical / VariantType.hh
hybridization / FoldTreeHybridize.hhid / AtomID.hh
hybridization / FoldTreeHybridize.hhid / AtomID_Map.hh
hybridization / FoldTreeHybridize.hhkinematics / FoldTree.hh
hybridization / FoldTreeHybridize.hhfragment / FragSet.fwd.hh
hybridization / FoldTreeHybridize.hhutil / kinematics_util.hh
hybridization / FoldTreeHybridize.hhscoring / dssp / PairingsList.hh
hybridization / FoldTreeHybridize.hhscoring / ScoreFunction.hh
simple_moves / ForceDisulfidesMover.ccconformation / Conformation.hh
simple_moves / ForceDisulfidesMover.ccpack / task / PackerTask.hh
simple_moves / ForceDisulfidesMover.ccpose / Pose.hh
simple_moves / ForceDisulfidesMover.ccscoring / ScoreFunction.hh
simple_moves / ForceDisulfidesMover.ccpose / selection.hh
simple_moves / ForceDisulfidesMover.ccpack / task / TaskFactory.hh
simple_moves / ForceDisulfidesMover.ccpack / task / operation / TaskOperations.hh
simple_moves / ForceDisulfidesMover.ccid / types.hh
simple_moves / ForceDisulfidesMover.cctypes.hh
simple_moves / ForceDisulfidesMover.ccpose / util.hh
simple_moves / ForceDisulfidesMover.hhpose / Pose.fwd.hh
simple_moves / ForceDisulfidesMover.hhscoring / ScoreFunction.fwd.hh
outputter / FormatStringOutputter.ccpose / Pose.hh
outputter / FormatStringOutputter.ccpose / util.hh
outputter / FormatStringOutputter.hhio / serialization / Pipe.fwd.hh
outputter / FormatStringOutputter.hhio / serialization / PipeMap.fwd.hh
frag_picker / scores / FourAtomsConstraintData.hhscoring / constraints / Func.hh
rbsegment_relax / FragInsertAndAlignMover.ccid / AtomID.hh
rbsegment_relax / FragInsertAndAlignMover.cckinematics / MoveMap.fwd.hh
rbsegment_relax / FragInsertAndAlignMover.ccpose / Pose.fwd.hh
rbsegment_relax / FragInsertAndAlignMover.ccpose / Pose.hh
rbsegment_relax / FragInsertAndAlignMover.ccconformation / Residue.hh
rbsegment_relax / FragInsertAndAlignMover.cctypes.hh
rbsegment_relax / FragInsertAndAlignMover.ccconformation / util.hh
rbsegment_relax / FragInsertAndAlignMover.hhfragment / Frame.hh
forge / methods / fragment_functions.ccfragment / ConstantLengthFragSet.hh
forge / methods / fragment_functions.ccfragment / FrameIterator.hh
forge / methods / fragment_functions.ccfragment / FrameIteratorWorker_.hh
forge / methods / fragment_functions.hhfragment / ConstantLengthFragSet.fwd.hh
forge / methods / fragment_functions.hhfragment / FrameIterator.fwd.hh
forge / methods / fragment_functions.hhtypes.hh
frag_picker / scores / fragment_scoring_utilities.hhtypes.hh
frag_picker / scores / FragmentAllAtomCrmsd.ccpose / annotated_sequence.hh
frag_picker / scores / FragmentAllAtomCrmsd.ccchemical / ChemicalManager.hh
frag_picker / scores / FragmentAllAtomCrmsd.ccimport_pose / import_pose.hh
frag_picker / scores / FragmentAllAtomCrmsd.ccid / NamedAtomID.hh
frag_picker / scores / FragmentAllAtomCrmsd.ccconformation / Residue.hh
frag_picker / scores / FragmentAllAtomCrmsd.hhpose / Pose.fwd.hh
frag_picker / scores / FragmentAllAtomCrmsd.hhtypes.hh
frag_picker / FragmentCandidate.ccoptimization / AtomTreeMinimizer.hh
frag_picker / FragmentCandidate.ccchemical / ChemicalManager.fwd.hh
frag_picker / FragmentCandidate.ccconformation / Conformation.hh
frag_picker / FragmentCandidate.ccscoring / Energies.hh
frag_picker / FragmentCandidate.ccoptimization / MinimizerOptions.hh
frag_picker / FragmentCandidate.cckinematics / MoveMap.hh
frag_picker / FragmentCandidate.ccpack / task / PackerTask.hh
frag_picker / FragmentCandidate.ccscoring / rms_util.hh
frag_picker / FragmentCandidate.ccscoring / ScoreFunction.hh
frag_picker / FragmentCandidate.ccscoring / ScoreFunctionFactory.hh
frag_picker / FragmentCandidate.ccio / silent / SilentStructFactory.hh
frag_picker / FragmentCandidate.ccutil / SwitchResidueTypeSet.hh
frag_picker / FragmentCandidate.ccpack / task / TaskFactory.hh
frag_picker / FragmentCandidate.cctypes.hh
frag_picker / FragmentCandidate.ccpose / util.hh
frag_picker / FragmentCandidate.ccfragment / util.hh
frag_picker / FragmentCandidate.ccchemical / VariantType.hh
frag_picker / FragmentCandidate.hhfragment / BBTorsionSRFD.hh
frag_picker / FragmentCandidate.hhfragment / FragData.hh
frag_picker / FragmentCandidate.hhio / silent / SilentFileData.hh
frag_picker / FragmentCandidate.hhtypes.hh
topology_broker / FragmentClaimer.ccfragment / FragSet.hh
topology_broker / FragmentClaimer.cckinematics / MoveMap.hh
topology_broker / FragmentClaimer.ccpose / Pose.hh
topology_broker / FragmentClaimer.cckinematics / util.hh
topology_broker / FragmentClaimer.hhkinematics / MoveMap.fwd.hh
topology_broker / FragmentClaimer.hhpose / Pose.fwd.hh
frag_picker / FragmentComparatorBase.hhtypes.hh
frag_picker / scores / FragmentCrmsd.ccimport_pose / import_pose.hh
frag_picker / scores / FragmentCrmsd.ccid / NamedAtomID.hh
frag_picker / scores / FragmentCrmsd.ccpose / Pose.hh
frag_picker / scores / FragmentCrmsd.ccio / pdb / pose_io.hh
frag_picker / scores / FragmentCrmsd.ccconformation / Residue.hh
frag_picker / scores / FragmentCrmsd.hhpose / Pose.fwd.hh
frag_picker / scores / FragmentCrmsd.hhtypes.hh
frag_picker / scores / FragmentCrmsdResDepth.ccimport_pose / import_pose.hh
frag_picker / scores / FragmentCrmsdResDepth.ccid / NamedAtomID.hh
frag_picker / scores / FragmentCrmsdResDepth.ccpose / Pose.hh
frag_picker / scores / FragmentCrmsdResDepth.ccio / pdb / pose_io.hh
frag_picker / scores / FragmentCrmsdResDepth.ccconformation / Residue.hh
frag_picker / scores / FragmentCrmsdResDepth.hhpose / Pose.fwd.hh
frag_picker / scores / FragmentCrmsdResDepth.hhtypes.hh
frag_picker / scores / FragmentDME.ccimport_pose / import_pose.hh
frag_picker / scores / FragmentDME.ccid / NamedAtomID.hh
frag_picker / scores / FragmentDME.ccpose / Pose.hh
frag_picker / scores / FragmentDME.ccio / pdb / pose_io.hh
frag_picker / scores / FragmentDME.ccconformation / Residue.hh
frag_picker / scores / FragmentDME.hhpose / Pose.fwd.hh
frag_picker / scores / FragmentDME.hhtypes.hh
simple_moves / FragmentMover.ccfragment / ConstantLengthFragSet.hh
simple_moves / FragmentMover.cckinematics / FoldTree.hh
simple_moves / FragmentMover.ccfragment / FragSet.hh
simple_moves / FragmentMover.ccfragment / Frame.hh
simple_moves / FragmentMover.cckinematics / MoveMap.hh
simple_moves / FragmentMover.ccpose / Pose.hh
simple_moves / FragmentMover.ccconformation / symmetry / SymmetryInfo.hh
simple_moves / FragmentMover.ccpose / symmetry / util.hh
simple_moves / FragmentMover.hhfragment / ConstantLengthFragSet.fwd.hh
simple_moves / FragmentMover.hhfragment / FragSet.fwd.hh
simple_moves / FragmentMover.hhfragment / Frame.fwd.hh
simple_moves / FragmentMover.hhfragment / FrameList.fwd.hh
simple_moves / FragmentMover.hhkinematics / MoveMap.fwd.hh
simple_moves / FragmentMover.hhpose / Pose.fwd.hh
frag_picker / FragmentPicker.ccfragment / ConstantLengthFragSet.hh
frag_picker / FragmentPicker.ccfragment / FragID.hh
frag_picker / FragmentPicker.ccimport_pose / import_pose.hh
frag_picker / FragmentPicker.ccscoring / rms_util.hh
frag_picker / FragmentPicker.ccfragment / SecondaryStructure.hh
frag_picker / FragmentPicker.ccsequence / SequenceAlignment.hh
frag_picker / FragmentPicker.ccid / SequenceMapping.hh
frag_picker / FragmentPicker.ccio / silent / SilentFileData.hh
frag_picker / FragmentPicker.ccio / silent / SilentStructFactory.hh
frag_picker / FragmentPicker.ccfragment / util.hh
frag_picker / FragmentPicker.ccpose / util.hh
frag_picker / FragmentPicker.ccsequence / util.hh
frag_picker / FragmentPicker.hhfragment / ConstantLengthFragSet.fwd.hh
frag_picker / FragmentPicker.hhfragment / SecondaryStructure.hh
frag_picker / FragmentPicker.hhsequence / SequenceProfile.hh
frag_picker / FragmentPicker.hhtypes.hh
jd2 / parser / FragmentReader.ccfragment / BBTorsionSRFD.hh
jd2 / parser / FragmentReader.ccchemical / ChemicalManager.hh
jd2 / parser / FragmentReader.ccfragment / ConstantLengthFragSet.hh
jd2 / parser / FragmentReader.ccfragment / FragData.hh
jd2 / parser / FragmentReader.ccfragment / FragmentIO.hh
jd2 / parser / FragmentReader.ccfragment / FragSet.hh
jd2 / parser / FragmentReader.ccfragment / Frame.hh
jd2 / parser / FragmentReader.ccfragment / FrameIterator.hh
jd2 / parser / FragmentReader.ccfragment / FrameIteratorWorker_.hh
jd2 / parser / FragmentReader.ccfragment / FrameList.hh
jd2 / parser / FragmentReader.ccimport_pose / import_pose.hh
jd2 / parser / FragmentReader.ccfragment / IndependentBBTorsionSRFD.hh
jd2 / parser / FragmentReader.ccfragment / OrderedFragSet.hh
jd2 / parser / FragmentReader.ccpose / Pose.hh
jd2 / parser / FragmentReader.ccchemical / ResidueType.hh
jd2 / parser / FragmentReader.ccimport_pose / pose_stream / SilentFilePoseInputStream.hh
jd2 / parser / FragmentReader.ccfragment / picking_old / vall / util.hh
jd2 / parser / FragmentReader.ccfragment / util.hh
jd2 / parser / FragmentReader.hhfragment / FragSet.fwd.hh
jd2 / parser / FragmentReader.hhpose / Pose.fwd.hh
abinitio / FragmentSampler.ccscoring / constraints / ConstraintSet.hh
abinitio / FragmentSampler.ccpose / Pose.hh
abinitio / FragmentSampler.ccscoring / ScoreFunction.fwd.hh
abinitio / FragmentSampler.ccscoring / ScoreFunction.hh
abinitio / FragmentSampler.ccscoring / ScoreFunctionFactory.hh
abinitio / FragmentSampler.ccscoring / ScoreType.hh
abinitio / FragmentSampler.cctypes.hh
abinitio / FragmentSampler.hhpose / Pose.fwd.hh
abinitio / FragmentSampler.hhscoring / ScoreFunction.fwd.hh
abinitio / FragmentSampler.hhscoring / ScoreType.hh
abinitio / FragmentSampler.hhtypes.hh
frag_picker / scores / FragmentScoreMap.hhtypes.hh
frag_picker / scores / FragmentScoringMethod.hhtypes.hh
toolbox / pose_metric_calculators / FragQualCalculator.ccchemical / ChemicalManager.fwd.hh
toolbox / pose_metric_calculators / FragQualCalculator.ccfragment / FragSet.hh
toolbox / pose_metric_calculators / FragQualCalculator.ccfragment / Frame.hh
toolbox / pose_metric_calculators / FragQualCalculator.ccfragment / FrameIterator.hh
toolbox / pose_metric_calculators / FragQualCalculator.ccfragment / FrameIteratorWorker_.hh
toolbox / pose_metric_calculators / FragQualCalculator.cckinematics / Jump.hh
toolbox / pose_metric_calculators / FragQualCalculator.ccpose / Pose.hh
toolbox / pose_metric_calculators / FragQualCalculator.ccchemical / ResidueType.hh
toolbox / pose_metric_calculators / FragQualCalculator.ccscoring / rms_util.hh
toolbox / pose_metric_calculators / FragQualCalculator.ccutil / SwitchResidueTypeSet.hh
toolbox / pose_metric_calculators / FragQualCalculator.ccid / types.hh
toolbox / pose_metric_calculators / FragQualCalculator.hhfragment / FragSet.fwd.hh
toolbox / pose_metric_calculators / FragQualCalculator.hhpose / Pose.fwd.hh
toolbox / pose_metric_calculators / FragQualCalculator.hhpose / metrics / PoseMetricCalculatorBase.hh
toolbox / pose_metric_calculators / FragQualCalculator.hhtypes.hh
fldsgn / filters / FragQualFilter.ccpose / metrics / CalculatorFactory.hh
fldsgn / filters / FragQualFilter.ccpose / Pose.hh
fldsgn / filters / FragQualFilter.cctypes.hh
fldsgn / filters / FragQualFilter.hhpose / Pose.fwd.hh
jd2 / parser / FragSetLoader.ccfragment / FragmentIO.hh
jd2 / parser / FragSetLoader.ccfragment / FragSet.hh
jd2 / parser / FragSetLoader.ccfragment / OrderedFragSet.hh
jd2 / parser / FragSetLoader.hhpose / Pose.fwd.hh
noesy_assign / FragsToAtomDist.ccpose / annotated_sequence.hh
noesy_assign / FragsToAtomDist.ccid / AtomID.hh
noesy_assign / FragsToAtomDist.ccchemical / ChemicalManager.hh
noesy_assign / FragsToAtomDist.ccfragment / FragmentIO.hh
noesy_assign / FragsToAtomDist.ccfragment / Frame.hh
noesy_assign / FragsToAtomDist.ccfragment / FrameIterator.hh
noesy_assign / FragsToAtomDist.ccimport_pose / import_pose.hh
noesy_assign / FragsToAtomDist.ccid / NamedAtomID.hh
noesy_assign / FragsToAtomDist.ccpose / Pose.hh
noesy_assign / FragsToAtomDist.ccchemical / ResidueTypeSet.hh
noesy_assign / FragsToAtomDist.ccscoring / ScoreFunction.hh
noesy_assign / FragsToAtomDist.ccscoring / ScoreFunctionFactory.hh
noesy_assign / FragsToAtomDist.ccscoring / ScoreType.hh
noesy_assign / FragsToAtomDist.cctypes.hh
noesy_assign / FragsToAtomDist.ccpose / util.hh
noesy_assign / FragsToAtomDist.hhid / AtomID.hh
noesy_assign / FragsToAtomDist.hhfragment / FragSet.hh
noesy_assign / FragsToAtomDist.hhid / NamedAtomID.hh
noesy_assign / FragsToAtomDist.hhpose / Pose.fwd.hh
noesy_assign / FragsToAtomDist.hhtypes.hh
surface_docking / FullatomRelaxMover.ccscoring / dssp / Dssp.hh
surface_docking / FullatomRelaxMover.cckinematics / FoldTree.hh
surface_docking / FullatomRelaxMover.ccpose / PDBInfo.hh
surface_docking / FullatomRelaxMover.ccpose / Pose.hh
surface_docking / FullatomRelaxMover.ccconformation / Residue.hh
surface_docking / FullatomRelaxMover.ccchemical / ResidueType.hh
surface_docking / FullatomRelaxMover.ccscoring / ScoreFunction.hh
surface_docking / FullatomRelaxMover.ccscoring / ScoreFunctionFactory.hh
surface_docking / FullatomRelaxMover.ccscoring / ScoreType.hh
surface_docking / FullatomRelaxMover.hhkinematics / MoveMap.fwd.hh
surface_docking / FullatomRelaxMover.hhkinematics / MoveMap.hh
surface_docking / FullatomRelaxMover.hhpose / Pose.fwd.hh
surface_docking / FullatomRelaxMover.hhscoring / ScoreFunction.fwd.hh
surface_docking / FullatomRelaxMover.hhtypes.hh
rna / FullAtomRNA_Fragments.ccid / AtomID.hh
rna / FullAtomRNA_Fragments.ccid / NamedAtomID.hh
rna / FullAtomRNA_Fragments.ccpose / Pose.hh
rna / FullAtomRNA_Fragments.ccconformation / Residue.hh
rna / FullAtomRNA_Fragments.ccscoring / rna / RNA_Util.hh
rna / FullAtomRNA_Fragments.ccid / TorsionID.hh
rna / FullAtomRNA_Fragments.cctypes.hh
rna / FullAtomRNA_Fragments.ccpose / util.hh
rna / FullAtomRNA_Fragments.hhpose / Pose.fwd.hh
rna / FullAtomRNA_Fragments.hhtypes.hh
kinmatch / FunGroupTK.cckinematics / AtomTree.hh
kinmatch / FunGroupTK.ccchemical / ChemicalManager.hh
kinmatch / FunGroupTK.ccconformation / Conformation.hh
kinmatch / FunGroupTK.ccpose / Pose.hh
kinmatch / FunGroupTK.ccconformation / Residue.hh
kinmatch / FunGroupTK.ccconformation / ResidueFactory.hh
kinmatch / FunGroupTK.ccchemical / ResidueTypeSet.hh
kinmatch / FunGroupTK.cckinematics / Stub.hh
kinmatch / FunGroupTK.ccpose / util.hh
kinmatch / FunGroupTK.hhpose / Pose.fwd.hh
kinmatch / FunGroupTK.hhconformation / Residue.fwd.hh
kinmatch / FunGroupTK.hhchemical / ResidueTypeSet.fwd.hh
kinmatch / FunGroupTK.hhkinematics / Stub.fwd.hh
kinmatch / FunGroupTK.hhtypes.hh
comparative_modeling / GenericJobInputter.ccpose / Pose.hh
comparative_modeling / GenericJobInputter.ccsequence / util.hh
comparative_modeling / GenericJobInputter.ccpose / symmetry / util.hh
comparative_modeling / GenericJobInputter.hhpose / Pose.fwd.hh
simple_moves / GenericMonteCarloMover.ccpack / task / PackerTask.hh
simple_moves / GenericMonteCarloMover.ccpose / Pose.hh
simple_moves / GenericMonteCarloMover.ccscoring / ScoreFunction.hh
simple_moves / GenericMonteCarloMover.ccpack / task / TaskFactory.hh
simple_moves / GenericMonteCarloMover.ccpack / task / operation / TaskOperation.hh
simple_moves / GenericMonteCarloMover.ccpose / util.hh
simple_moves / GenericMonteCarloMover.hhpack / task / PackerTask.hh
simple_moves / GenericMonteCarloMover.hhpose / Pose.fwd.hh
simple_moves / GenericMonteCarloMover.hhscoring / ScoreFunction.hh
simple_moves / GenericMonteCarloMover.hhpack / task / TaskFactory.hh
simple_moves / GenericMonteCarloMover.hhtypes.hh
genetic_algorithm / GeneticAlgorithm.cctypes.hh
genetic_algorithm / GeneticAlgorithm.hhtypes.hh
features / GeometricSolvationFeatures.ccscoring / geometric_solvation / ExactOccludedHbondSolEnergy.hh
features / GeometricSolvationFeatures.ccpose / Pose.hh
features / GeometricSolvationFeatures.cctypes.hh
features / GeometricSolvationFeatures.hhscoring / geometric_solvation / ExactOccludedHbondSolEnergy.hh
features / GeometricSolvationFeatures.hhtypes.hh
features / GeometricSolvationFeaturesCreator.hhtypes.hh
match / downstream / GeometrySecMatchRPE.ccconformation / Residue.hh
match / downstream / GeometrySecMatchRPE.hhconformation / Residue.fwd.hh
match / downstream / GeometrySecMatchRPE.hhchemical / ResidueType.fwd.hh
match / downstream / GeometrySecMatchRPE.hhtypes.hh
frag_picker / GrabAllCollector.hhtypes.hh
antibody2 / GraftCDRLoopsProtocol.ccscoring / Energies.hh
antibody2 / GraftCDRLoopsProtocol.ccimport_pose / import_pose.hh
antibody2 / GraftCDRLoopsProtocol.ccpose / PDBInfo.hh
antibody2 / GraftCDRLoopsProtocol.ccio / pdb / pose_io.hh
antibody2 / GraftCDRLoopsProtocol.ccscoring / ScoreFunctionFactory.hh
antibody2 / GraftCDRLoopsProtocol.ccscoring / ScoreType.hh
antibody2 / GraftCDRLoopsProtocol.ccpack / task / TaskFactory.hh
antibody2 / GraftCDRLoopsProtocol.ccpose / util.hh
antibody2 / GraftCDRLoopsProtocol.hhpose / Pose.hh
antibody2 / GraftCDRLoopsProtocol.hhscoring / ScoreFunction.hh
antibody2 / GraftCDRLoopsProtocol.hhpack / task / TaskFactory.fwd.hh
antibody / GraftMover.ccchemical / ChemicalManager.fwd.hh
antibody / GraftMover.ccconformation / Conformation.hh
antibody / GraftMover.ccimport_pose / import_pose.hh
antibody / GraftMover.ccpack / task / operation / NoRepackDisulfides.hh
antibody / GraftMover.ccpack / task / operation / OperateOnCertainResidues.hh
antibody / GraftMover.ccpack / task / PackerTask.hh
antibody / GraftMover.ccpose / Pose.hh
antibody / GraftMover.ccpack / task / operation / ResFilters.hh
antibody / GraftMover.ccpack / task / operation / ResLvlTaskOperations.hh
antibody / GraftMover.ccscoring / rms_util.hh
antibody / GraftMover.ccpack / dunbrack / RotamerConstraint.hh
antibody / GraftMover.ccscoring / ScoreFunction.hh
antibody / GraftMover.ccscoring / ScoreFunctionFactory.hh
antibody / GraftMover.ccpack / task / TaskFactory.hh
antibody / GraftMover.ccpack / task / operation / TaskOperations.hh
antibody / GraftMover.ccid / types.hh
antibody / GraftMover.ccpack / rotamer_set / UnboundRotamersOperation.hh
antibody / GraftMover.ccpose / util.hh
antibody / GraftMover.ccpose / util.tmpl.hh
antibody / GraftMover.ccchemical / VariantType.hh
antibody / GraftMover.hhpose / Pose.hh
antibody / GraftMover.hhpack / task / TaskFactory.fwd.hh
grafting / GraftMoverBase.ccid / AtomID_Map.hh
grafting / GraftMoverBase.ccchemical / ChemicalManager.hh
grafting / GraftMoverBase.ccconformation / Conformation.hh
grafting / GraftMoverBase.cckinematics / FoldTree.hh
grafting / GraftMoverBase.cckinematics / MoveMap.hh
grafting / GraftMoverBase.ccpose / Pose.hh
grafting / GraftMoverBase.ccconformation / Residue.hh
grafting / GraftMoverBase.ccchemical / ResidueType.hh
grafting / GraftMoverBase.ccchemical / ResidueTypeSet.hh
grafting / GraftMoverBase.ccscoring / rms_util.hh
grafting / GraftMoverBase.ccscoring / ScoreFunctionFactory.hh
grafting / GraftMoverBase.ccid / TorsionID.hh
grafting / GraftMoverBase.ccpose / util.hh
grafting / GraftMoverBase.ccchemical / VariantType.hh
grafting / GraftMoverBase.hhpose / Pose.hh
grafting / GraftMoverBase.hhscoring / ScoreFunction.hh
antibody2 / GraftOneCDRLoop.ccid / AtomID_Map.hh
antibody2 / GraftOneCDRLoop.ccimport_pose / import_pose.hh
antibody2 / GraftOneCDRLoop.ccscoring / rms_util.tmpl.hh
antibody2 / GraftOneCDRLoop.ccscoring / ScoreFunctionFactory.hh
antibody2 / GraftOneCDRLoop.ccpose / util.hh
antibody2 / GraftOneCDRLoop.ccpose / util.tmpl.hh
antibody2 / GraftOneCDRLoop.hhpose / Pose.hh
antibody2 / GraftOneCDRLoop.hhscoring / ScoreFunction.fwd.hh
viewer / GraphicsState.hhtypes.hh
design_opt / GreedyOptMutationMover.ccconformation / Conformation.hh
design_opt / GreedyOptMutationMover.ccpack / pack_rotamers.hh
design_opt / GreedyOptMutationMover.ccpack / task / PackerTask.hh
design_opt / GreedyOptMutationMover.ccpose / PDBInfo.hh
design_opt / GreedyOptMutationMover.ccpose / Pose.hh
design_opt / GreedyOptMutationMover.ccconformation / Residue.hh
design_opt / GreedyOptMutationMover.ccchemical / ResidueType.fwd.hh
design_opt / GreedyOptMutationMover.ccchemical / ResidueType.hh
design_opt / GreedyOptMutationMover.ccscoring / ScoreFunction.hh
design_opt / GreedyOptMutationMover.ccpack / task / TaskFactory.hh
design_opt / GreedyOptMutationMover.ccpose / symmetry / util.hh
design_opt / GreedyOptMutationMover.hhpack / task / PackerTask.fwd.hh
design_opt / GreedyOptMutationMover.hhpose / Pose.hh
design_opt / GreedyOptMutationMover.hhscoring / ScoreFunction.fwd.hh
design_opt / GreedyOptMutationMover.hhpack / task / TaskFactory.fwd.hh
design_opt / GreedyOptMutationMover.hhtypes.hh
simple_moves / GreenPacker.ccchemical / AtomICoor.hh
simple_moves / GreenPacker.ccscoring / Energies.hh
simple_moves / GreenPacker.ccscoring / EnergyMap.hh
simple_moves / GreenPacker.ccgraph / Graph.hh
simple_moves / GreenPacker.ccpack / interaction_graph / InteractionGraphFactory.hh
simple_moves / GreenPacker.ccscoring / methods / LongRangeTwoBodyEnergy.hh
simple_moves / GreenPacker.ccscoring / LREnergyContainer.hh
simple_moves / GreenPacker.ccpack / pack_rotamers.hh
simple_moves / GreenPacker.ccpack / packer_neighbors.hh
simple_moves / GreenPacker.ccpack / task / PackerTask.hh
simple_moves / GreenPacker.ccpose / Pose.hh
simple_moves / GreenPacker.ccpack / interaction_graph / PrecomputedPairEnergiesInteractionGraph.hh
simple_moves / GreenPacker.ccconformation / Residue.hh
simple_moves / GreenPacker.ccchemical / ResidueType.hh
simple_moves / GreenPacker.ccpack / rotamer_set / RotamerSet.hh
simple_moves / GreenPacker.ccpack / rotamer_set / RotamerSets.hh
simple_moves / GreenPacker.ccscoring / ScoreFunction.hh
simple_moves / GreenPacker.ccpack / task / TaskFactory.hh
simple_moves / GreenPacker.hhchemical / AA.hh
simple_moves / GreenPacker.hhscoring / EnergyMap.fwd.hh
simple_moves / GreenPacker.hhgraph / Graph.fwd.hh
simple_moves / GreenPacker.hhscoring / methods / LongRangeTwoBodyEnergy.fwd.hh
simple_moves / GreenPacker.hhpack / task / PackerTask.fwd.hh
simple_moves / GreenPacker.hhpose / Pose.fwd.hh
simple_moves / GreenPacker.hhpack / interaction_graph / PrecomputedPairEnergiesInteractionGraph.fwd.hh
simple_moves / GreenPacker.hhconformation / Residue.fwd.hh
simple_moves / GreenPacker.hhchemical / ResidueType.fwd.hh
simple_moves / GreenPacker.hhpack / rotamer_set / RotamerSets.fwd.hh
simple_moves / GreenPacker.hhscoring / ScoreFunction.fwd.hh
simple_moves / GreenPacker.hhscoring / ScoreType.hh
simple_moves / GreenPacker.hhpack / task / TaskFactory.fwd.hh
simple_moves / GreenPacker.hhtypes.hh
ligand_docking / grid_functions.ccgraph / Graph.hh
ligand_docking / grid_functions.ccpack / task / PackerTask.hh
ligand_docking / grid_functions.ccpose / Pose.hh
ligand_docking / grid_functions.ccconformation / Residue.hh
ligand_docking / grid_functions.ccchemical / ResidueType.hh
ligand_docking / grid_functions.ccpack / dunbrack / RotamerLibrary.hh
ligand_docking / grid_functions.ccscoring / ScoreFunction.hh
ligand_docking / grid_functions.ccpack / task / TaskFactory.hh
ligand_docking / grid_functions.hhgrid / CartGrid.hh
ligand_docking / grid_functions.hhpose / Pose.fwd.hh
ligand_docking / grid_functions.hhconformation / Residue.fwd.hh
qsar / scoring_grid / GridBase.hhpose / Pose.fwd.hh
qsar / scoring_grid / GridBase.hhconformation / Residue.fwd.hh
qsar / scoring_grid / GridBase.hhtypes.hh
qsar / scoring_grid / GridCreator.hhtypes.hh
qsar / scoring_grid / GridInitMover.cckinematics / Jump.hh
qsar / scoring_grid / GridInitMover.ccpose / Pose.hh
qsar / scoring_grid / GridInitMover.ccpose / util.hh
qsar / scoring_grid / GridInitMover.hhkinematics / Jump.fwd.hh
qsar / scoring_grid / GridInitMover.hhconformation / Residue.fwd.hh
qsar / scoring_grid / GridManager.ccconformation / Residue.hh
qsar / scoring_grid / GridManager.ccpose / util.hh
qsar / scoring_grid / GridManager.hhpose / Pose.fwd.hh
qsar / scoring_grid / GridManager.hhconformation / Residue.fwd.hh
qsar / scoring_grid / GridManager.hhtypes.hh
scoring / methods / pcs2 / GridSearchIterator.hhtypes.hh
scoring / methods / pcs / GridSearchIterator.hhtypes.hh
scoring / methods / pcs2 / GridSearchIteratorCA.ccpose / Pose.hh
scoring / methods / pcs2 / GridSearchIteratorCA.ccconformation / Residue.hh
scoring / methods / pcs2 / GridSearchIteratorCA.hhpose / Pose.fwd.hh
scoring / methods / pcs2 / GridSearchIteratorCA.hhtypes.hh
forge / build / GrowLeft.ccpose / annotated_sequence.hh
forge / build / GrowLeft.ccconformation / Conformation.hh
forge / build / GrowLeft.ccconformation / signals / LengthEvent.hh
forge / build / GrowLeft.cckinematics / MoveMap.hh
forge / build / GrowLeft.ccpose / Pose.hh
forge / build / GrowLeft.ccchemical / ResidueType.hh
forge / build / GrowLeft.hhconformation / signals / LengthEvent.fwd.hh
forge / build / GrowLeft.hhpose / Pose.fwd.hh
ligand_docking / GrowLigand.ccchemical / AtomTypeSet.hh
ligand_docking / GrowLigand.ccchemical / ChemicalManager.hh
ligand_docking / GrowLigand.ccconformation / Conformation.hh
ligand_docking / GrowLigand.ccpose / Pose.hh
ligand_docking / GrowLigand.ccconformation / Residue.hh
ligand_docking / GrowLigand.ccchemical / ResidueSelector.hh
ligand_docking / GrowLigand.cctypes.hh
ligand_docking / GrowLigand.ccpose / util.hh
ligand_docking / GrowLigand.hhpose / Pose.fwd.hh
ligand_docking / GrowLigand.hhconformation / Residue.fwd.hh
seeded_abinitio / GrowPeptides.ccchemical / AtomType.hh
seeded_abinitio / GrowPeptides.ccpose / datacache / cacheable_observers.hh
seeded_abinitio / GrowPeptides.ccpose / datacache / CacheableObserverType.hh
seeded_abinitio / GrowPeptides.ccchemical / ChemicalManager.fwd.hh
seeded_abinitio / GrowPeptides.ccconformation / Conformation.hh
seeded_abinitio / GrowPeptides.ccscoring / dssp / Dssp.hh
seeded_abinitio / GrowPeptides.cckinematics / FoldTree.hh
seeded_abinitio / GrowPeptides.ccimport_pose / import_pose.hh
seeded_abinitio / GrowPeptides.ccpose / datacache / ObserverCache.hh
seeded_abinitio / GrowPeptides.ccpose / Pose.fwd.hh
seeded_abinitio / GrowPeptides.ccpose / Pose.hh
seeded_abinitio / GrowPeptides.ccconformation / Residue.hh
seeded_abinitio / GrowPeptides.ccconformation / ResidueFactory.hh
seeded_abinitio / GrowPeptides.ccchemical / ResidueSelector.hh
seeded_abinitio / GrowPeptides.ccchemical / ResidueTypeSet.fwd.hh
seeded_abinitio / GrowPeptides.ccscoring / ScoreFunction.fwd.hh
seeded_abinitio / GrowPeptides.ccscoring / ScoreFunction.hh
seeded_abinitio / GrowPeptides.ccscoring / ScoreFunctionFactory.hh
seeded_abinitio / GrowPeptides.ccpose / selection.hh
seeded_abinitio / GrowPeptides.ccid / SequenceMapping.hh
seeded_abinitio / GrowPeptides.ccutil / SwitchResidueTypeSet.hh
seeded_abinitio / GrowPeptides.cctypes.hh
seeded_abinitio / GrowPeptides.ccchemical / util.hh
seeded_abinitio / GrowPeptides.ccpose / util.hh
seeded_abinitio / GrowPeptides.ccchemical / VariantType.hh
seeded_abinitio / GrowPeptides.hhkinematics / FoldTree.fwd.hh
seeded_abinitio / GrowPeptides.hhpose / Pose.fwd.hh
seeded_abinitio / GrowPeptides.hhscoring / ScoreFunction.fwd.hh
seeded_abinitio / GrowPeptides.hhid / SequenceMapping.fwd.hh
forge / build / GrowRight.ccpose / annotated_sequence.hh
forge / build / GrowRight.ccconformation / Conformation.hh
forge / build / GrowRight.ccconformation / signals / LengthEvent.hh
forge / build / GrowRight.cckinematics / MoveMap.hh
forge / build / GrowRight.ccpose / Pose.hh
forge / build / GrowRight.ccchemical / ResidueType.hh
forge / build / GrowRight.hhconformation / signals / LengthEvent.fwd.hh
forge / build / GrowRight.hhpose / Pose.fwd.hh
simple_moves / GunnCost.ccid / AtomID.hh
frag_picker / scores / GunnCost.ccid / AtomID.hh
simple_moves / GunnCost.ccchemical / ChemicalManager.hh
simple_moves / GunnCost.ccfragment / FragData.hh
simple_moves / GunnCost.ccpose / Pose.hh
frag_picker / scores / GunnCost.ccpose / Pose.hh
simple_moves / GunnCost.ccchemical / ResidueType.hh
frag_picker / scores / GunnCost.ccchemical / ResidueType.hh
simple_moves / GunnCost.ccscoring / ScoreFunction.fwd.hh
frag_picker / scores / GunnCost.ccscoring / ScoreFunction.fwd.hh
simple_moves / GunnCost.cctypes.hh
frag_picker / scores / GunnCost.cctypes.hh
simple_moves / GunnCost.hhfragment / FragCache.hh
simple_moves / GunnCost.hhfragment / Frame.fwd.hh
simple_moves / GunnCost.hhpose / Pose.fwd.hh
frag_picker / scores / GunnCost.hhpose / Pose.fwd.hh
simple_moves / GunnCost.hhtypes.hh
frag_picker / scores / GunnCost.hhtypes.hh
frag_picker / scores / GunnCostScore.ccimport_pose / import_pose.hh
frag_picker / scores / GunnCostScore.hhpose / Pose.fwd.hh
frag_picker / scores / GunnCostScore.hhtypes.hh
antibody2 / H3CterInsert.ccfragment / BBTorsionSRFD.hh
antibody2 / H3CterInsert.cckinematics / FoldTree.hh
antibody2 / H3CterInsert.hhfragment / FragData.hh
antibody2 / H3PerturbCCD.ccfragment / BBTorsionSRFD.hh
antibody2 / H3PerturbCCD.cckinematics / FoldTree.hh
antibody2 / H3PerturbCCD.ccfragment / FragData.hh
antibody2 / H3PerturbCCD.ccfragment / FragSet.hh
antibody2 / H3PerturbCCD.ccfragment / Frame.hh
antibody2 / H3PerturbCCD.ccfragment / FrameIterator.hh
antibody2 / H3PerturbCCD.ccfragment / FrameList.hh
antibody2 / H3PerturbCCD.ccimport_pose / import_pose.hh
antibody2 / H3PerturbCCD.cckinematics / Jump.hh
antibody2 / H3PerturbCCD.ccpose / PDBInfo.hh
antibody2 / H3PerturbCCD.ccpose / Pose.hh
antibody2 / H3PerturbCCD.ccio / pdb / pose_io.hh
antibody2 / H3PerturbCCD.ccscoring / ScoreFunction.hh
antibody2 / H3PerturbCCD.ccscoring / ScoreFunctionFactory.hh
antibody2 / H3PerturbCCD.ccpose / util.hh
antibody2 / H3PerturbCCD.ccchemical / VariantType.hh
antibody2 / H3PerturbCCD.hhfragment / FragSet.hh
antibody2 / H3PerturbCCD.hhpose / Pose.hh
antibody2 / H3PerturbCCD.hhscoring / ScoreFunction.hh
antibody2 / H3PerturbCCD.hhpack / task / TaskFactory.fwd.hh
antibody2 / H3RefineCCD.ccscoring / constraints / ConstraintFactory.hh
antibody2 / H3RefineCCD.ccscoring / constraints / ConstraintIO.hh
antibody2 / H3RefineCCD.cckinematics / FoldTree.hh
antibody2 / H3RefineCCD.ccimport_pose / import_pose.hh
antibody2 / H3RefineCCD.cckinematics / MoveMap.hh
antibody2 / H3RefineCCD.ccpack / task / operation / NoRepackDisulfides.hh
antibody2 / H3RefineCCD.ccpack / task / operation / OperateOnCertainResidues.hh
antibody2 / H3RefineCCD.ccpack / task / PackerTask.hh
antibody2 / H3RefineCCD.ccpose / PDBInfo.hh
antibody2 / H3RefineCCD.ccpose / Pose.hh
antibody2 / H3RefineCCD.ccio / pdb / pose_io.hh
antibody2 / H3RefineCCD.ccpack / task / operation / ResFilters.hh
antibody2 / H3RefineCCD.ccpack / task / operation / ResLvlTaskOperations.hh
antibody2 / H3RefineCCD.ccscoring / ScoreFunction.hh
antibody2 / H3RefineCCD.ccscoring / ScoreFunctionFactory.hh
antibody2 / H3RefineCCD.ccpack / task / TaskFactory.hh
antibody2 / H3RefineCCD.ccpack / task / operation / TaskOperations.hh
antibody2 / H3RefineCCD.ccpose / util.hh
antibody2 / H3RefineCCD.ccchemical / VariantType.hh
antibody2 / H3RefineCCD.hhkinematics / MoveMap.fwd.hh
antibody2 / H3RefineCCD.hhpose / Pose.hh
antibody2 / H3RefineCCD.hhscoring / ScoreFunction.hh
antibody2 / H3RefineCCD.hhpack / task / TaskFactory.hh
canonical_sampling / HamiltonianExchange.ccscoring / ScoreFunction.hh
canonical_sampling / HamiltonianExchange.ccscoring / ScoreFunctionFactory.hh
canonical_sampling / HamiltonianExchange.ccpack / task / TaskFactory.hh
canonical_sampling / HamiltonianExchange.ccpack / task / operation / TaskOperations.hh
canonical_sampling / HamiltonianExchange.cctypes.hh
canonical_sampling / HamiltonianExchange.hhpose / Pose.fwd.hh
canonical_sampling / HamiltonianExchange.hhscoring / ScoreFunction.fwd.hh
canonical_sampling / HamiltonianExchange.hhtypes.hh
qsar / scoring_grid / HbaGrid.ccid / AtomID.hh
qsar / scoring_grid / HbaGrid.ccchemical / AtomType.hh
qsar / scoring_grid / HbaGrid.ccpose / Pose.hh
qsar / scoring_grid / HbaGrid.ccconformation / Residue.hh
qsar / scoring_grid / HbdGrid.ccid / AtomID.hh
qsar / scoring_grid / HbdGrid.ccchemical / AtomType.hh
qsar / scoring_grid / HbdGrid.ccpose / Pose.hh
qsar / scoring_grid / HbdGrid.ccconformation / Residue.hh
ligand_docking / HBondAcceptorFilter.ccconformation / Conformation.hh
ligand_docking / HBondAcceptorFilter.ccpose / Pose.hh
ligand_docking / HBondAcceptorFilter.cctypes.hh
ligand_docking / HBondAcceptorFilter.ccpose / util.hh
ligand_docking / HBondAcceptorFilter.hhtypes.hh
ligand_docking / HBondDonorFilter.ccconformation / Conformation.hh
ligand_docking / HBondDonorFilter.ccpose / Pose.hh
ligand_docking / HBondDonorFilter.cctypes.hh
ligand_docking / HBondDonorFilter.ccpose / util.hh
ligand_docking / HBondDonorFilter.hhtypes.hh
features / HBondFeatures.ccid / AtomID_Map.hh
features / HBondFeatures.ccchemical / AtomType.hh
features / HBondFeatures.ccscoring / Energies.hh
features / HBondFeatures.ccscoring / methods / EnergyMethodOptions.hh
features / HBondFeatures.ccscoring / etable / EtableEnergy.hh
features / HBondFeatures.ccgraph / Graph.hh
features / HBondFeatures.ccscoring / hbonds / hbonds.hh
features / HBondFeatures.ccscoring / hbonds / hbonds_geom.hh
features / HBondFeatures.ccscoring / hbonds / HBondSet.hh
features / HBondFeatures.ccscoring / hbonds / HBondTypeManager.hh
features / HBondFeatures.ccpose / PDBInfo.hh
features / HBondFeatures.ccpose / Pose.hh
features / HBondFeatures.ccconformation / Residue.hh
features / HBondFeatures.ccchemical / ResidueType.fwd.hh
features / HBondFeatures.ccscoring / sasa.hh
features / HBondFeatures.ccscoring / ScoreFunction.hh
features / HBondFeatures.ccscoring / ScoreFunctionFactory.hh
features / HBondFeatures.ccscoring / ScoreType.hh
features / HBondFeatures.ccscoring / ScoringManager.hh
features / HBondFeatures.ccscoring / TenANeighborGraph.hh
features / HBondFeatures.cctypes.hh
features / HBondFeatures.ccpose / util.hh
features / HBondFeatures.ccpose / util.tmpl.hh
features / HBondFeatures.hhid / AtomID_Map.fwd.hh
features / HBondFeatures.hhscoring / hbonds / HBondOptions.fwd.hh
features / HBondFeatures.hhscoring / hbonds / HBondSet.fwd.hh
features / HBondFeatures.hhpose / Pose.fwd.hh
features / HBondFeatures.hhscoring / ScoreFunction.fwd.hh
features / HBondFeatures.hhtypes.hh
features / HBondFeaturesCreator.hhtypes.hh
features / HBondParameterFeatures.ccscoring / methods / EnergyMethodOptions.hh
features / HBondParameterFeatures.ccscoring / hbonds / HBondDatabase.hh
features / HBondParameterFeatures.ccscoring / hbonds / HBondOptions.hh
features / HBondParameterFeatures.ccchemical / ResidueType.hh
features / HBondParameterFeatures.ccscoring / ScoreFunction.hh
features / HBondParameterFeatures.ccscoring / ScoreFunctionFactory.hh
features / HBondParameterFeatures.cctypes.hh
features / HBondParameterFeatures.hhscoring / ScoreFunction.fwd.hh
features / HBondParameterFeatures.hhtypes.hh
features / HBondParameterFeaturesCreator.hhtypes.hh
protein_interface_design / filters / HbondsToResidueFilter.ccchemical / AtomType.hh
protein_interface_design / filters / HbondsToResidueFilter.ccchemical / ChemicalManager.fwd.hh
protein_interface_design / filters / HbondsToResidueFilter.ccconformation / Conformation.hh
protein_interface_design / filters / HbondsToResidueFilter.ccscoring / Energies.hh
protein_interface_design / filters / HbondsToResidueFilter.cckinematics / FoldTree.hh
protein_interface_design / filters / HbondsToResidueFilter.ccpack / pack_rotamers.hh
protein_interface_design / filters / HbondsToResidueFilter.ccpack / task / PackerTask.hh
protein_interface_design / filters / HbondsToResidueFilter.ccpose / PDBInfo.hh
protein_interface_design / filters / HbondsToResidueFilter.ccpose / Pose.hh
protein_interface_design / filters / HbondsToResidueFilter.ccscoring / ScoreFunction.hh
protein_interface_design / filters / HbondsToResidueFilter.ccscoring / ScoreFunctionFactory.hh
protein_interface_design / filters / HbondsToResidueFilter.ccscoring / ScoreType.hh
protein_interface_design / filters / HbondsToResidueFilter.ccscoring / ScoreTypeManager.hh
protein_interface_design / filters / HbondsToResidueFilter.ccpose / selection.hh
protein_interface_design / filters / HbondsToResidueFilter.ccutil / SwitchResidueTypeSet.hh
protein_interface_design / filters / HbondsToResidueFilter.ccconformation / symmetry / SymmetricConformation.hh
protein_interface_design / filters / HbondsToResidueFilter.ccscoring / symmetry / SymmetricScoreFunction.hh
protein_interface_design / filters / HbondsToResidueFilter.ccconformation / symmetry / SymmetryInfo.hh
protein_interface_design / filters / HbondsToResidueFilter.ccpack / task / TaskFactory.hh
protein_interface_design / filters / HbondsToResidueFilter.cctypes.hh
protein_interface_design / filters / HbondsToResidueFilter.ccpose / symmetry / util.hh
protein_interface_design / filters / HbondsToResidueFilter.hhpose / Pose.fwd.hh
protein_interface_design / filters / HbondsToResidueFilter.hhscoring / ScoreFunction.hh
protein_interface_design / filters / HbondsToResidueFilter.hhscoring / ScoreType.hh
protein_interface_design / filters / HbondsToResidueFilter.hhtypes.hh
simple_moves / hbs / HbsPatcher.ccid / AtomID.hh
simple_moves / hbs / HbsPatcher.ccscoring / constraints / AtomPairConstraint.hh
simple_moves / hbs / HbsPatcher.ccchemical / ChemicalManager.hh
simple_moves / hbs / HbsPatcher.ccconformation / Conformation.hh
simple_moves / hbs / HbsPatcher.ccscoring / constraints / ConstraintSet.fwd.hh
simple_moves / hbs / HbsPatcher.ccscoring / constraints / ConstraintSet.hh
simple_moves / hbs / HbsPatcher.ccscoring / constraints / HarmonicFunc.hh
simple_moves / hbs / HbsPatcher.ccchemical / Patch.hh
simple_moves / hbs / HbsPatcher.ccpose / Pose.hh
simple_moves / hbs / HbsPatcher.ccconformation / Residue.hh
simple_moves / hbs / HbsPatcher.ccchemical / ResidueType.hh
simple_moves / hbs / HbsPatcher.ccchemical / ResidueTypeSet.hh
simple_moves / hbs / HbsPatcher.cctypes.hh
simple_moves / hbs / HbsPatcher.ccconformation / util.hh
simple_moves / hbs / HbsPatcher.ccchemical / VariantType.hh
simple_moves / hbs / HbsPatcher.hhpose / Pose.fwd.hh
simple_moves / hbs / HbsPatcher.hhtypes.hh
canonical_sampling / mc_convergence_checks / Heat_ConvergenceCheck.hhpose / Pose.fwd.hh
canonical_sampling / mc_convergence_checks / Heat_ConvergenceCheck.hhscoring / ScoreFunction.fwd.hh
canonical_sampling / mc_convergence_checks / Heat_ConvergenceCheck.hhtypes.hh
ligand_docking / HeavyAtomFilter.ccconformation / Conformation.hh
filters / HeavyAtomFilter.ccconformation / Conformation.hh
filters / HeavyAtomFilter.ccpose / PDBInfo.hh
ligand_docking / HeavyAtomFilter.ccpose / Pose.hh
filters / HeavyAtomFilter.ccpose / Pose.hh
ligand_docking / HeavyAtomFilter.cctypes.hh
filters / HeavyAtomFilter.cctypes.hh
ligand_docking / HeavyAtomFilter.ccpose / util.hh
filters / HeavyAtomFilter.ccpose / util.hh
filters / HeavyAtomFilter.hhpose / Pose.hh
ligand_docking / HeavyAtomFilter.hhtypes.hh
filters / HeavyAtomFilter.hhtypes.hh
abinitio / HedgeArchive.ccio / silent / SilentFileData.hh
abinitio / HedgeArchive.ccio / silent / SilentStruct.hh
abinitio / HedgeArchive.hhpose / Pose.fwd.hh
abinitio / HedgeArchive.hhio / silent / silent.fwd.hh
abinitio / HedgeArchive.hhtypes.hh
features / helixAssembly / HelicalFragment.ccconformation / Residue.hh
features / helixAssembly / HelicalFragment.hhpose / Pose.hh
features / helixAssembly / HelicalFragment.hhtypes.hh
simple_moves / HelicalPeptideLengthMover.ccid / AtomID.hh
simple_moves / HelicalPeptideLengthMover.ccchemical / ChemicalManager.hh
simple_moves / HelicalPeptideLengthMover.cckinematics / MoveMap.hh
simple_moves / HelicalPeptideLengthMover.ccpose / Pose.hh
simple_moves / HelicalPeptideLengthMover.ccconformation / Residue.hh
simple_moves / HelicalPeptideLengthMover.ccconformation / ResidueFactory.hh
simple_moves / HelicalPeptideLengthMover.ccchemical / ResidueTypeSet.hh
simple_moves / HelicalPeptideLengthMover.cctypes.hh
simple_moves / HelicalPeptideLengthMover.hhpose / Pose.fwd.hh
simple_moves / HelicalPeptideLengthMover.hhconformation / Residue.fwd.hh
features / helixAssembly / HelixBundleFeatures.ccconformation / Atom.hh
features / helixAssembly / HelixBundleFeatures.ccscoring / Energies.hh
features / helixAssembly / HelixBundleFeatures.ccscoring / EnergyGraph.hh
features / helixAssembly / HelixBundleFeatures.ccgraph / Graph.hh
features / helixAssembly / HelixBundleFeatures.ccconformation / Residue.hh
features / helixAssembly / HelixBundleFeatures.ccscoring / sasa.hh
features / helixAssembly / HelixBundleFeatures.ccscoring / ScoreFunction.hh
features / helixAssembly / HelixBundleFeatures.ccscoring / ScoreFunctionFactory.hh
features / helixAssembly / HelixBundleFeatures.ccscoring / ScoreType.hh
features / helixAssembly / HelixBundleFeatures.cctypes.hh
features / helixAssembly / HelixBundleFeatures.ccpose / util.hh
features / helixAssembly / HelixBundleFeaturesCreator.hhtypes.hh
fldsgn / filters / HelixKinkFilter.ccscoring / Energies.hh
fldsgn / filters / HelixKinkFilter.ccscoring / EnergiesCacheableDataType.hh
fldsgn / filters / HelixKinkFilter.ccpose / Pose.hh
fldsgn / filters / HelixKinkFilter.cctypes.hh
fldsgn / filters / HelixKinkFilter.hhpose / Pose.fwd.hh
fldsgn / topology / HelixPairing.hhtypes.hh
fldsgn / filters / HelixPairingFilter.ccscoring / dssp / Dssp.hh
fldsgn / filters / HelixPairingFilter.ccpose / Pose.hh
fldsgn / filters / HelixPairingFilter.cctypes.hh
fldsgn / filters / HelixPairingFilter.hhpose / Pose.fwd.hh
nonlocal / HelixRotate.ccconformation / Conformation.hh
nonlocal / HelixRotate.cckinematics / FoldTree.hh
nonlocal / HelixRotate.cckinematics / Jump.hh
nonlocal / HelixRotate.ccid / NamedAtomID.hh
nonlocal / HelixRotate.ccpose / Pose.hh
nonlocal / HelixRotate.cckinematics / Stub.hh
nonlocal / HelixRotate.hhpose / Pose.fwd.hh
canonical_sampling / mc_convergence_checks / HierarchicalLevel.cckinematics / Jump.hh
canonical_sampling / mc_convergence_checks / HierarchicalLevel.ccpose / Pose.hh
canonical_sampling / mc_convergence_checks / HierarchicalLevel.ccio / silent / SilentFileData.hh
canonical_sampling / mc_convergence_checks / HierarchicalLevel.ccio / silent / SilentStruct.hh
canonical_sampling / mc_convergence_checks / HierarchicalLevel.ccio / silent / SilentStructFactory.hh
canonical_sampling / mc_convergence_checks / HierarchicalLevel.cctypes.hh
canonical_sampling / mc_convergence_checks / HierarchicalLevel.hhpose / Pose.hh
canonical_sampling / mc_convergence_checks / HierarchicalLevel.hhio / silent / SilentStruct.hh
canonical_sampling / mc_convergence_checks / HierarchicalLevel.hhtypes.hh
ligand_docking / HighResDocker.ccoptimization / MinimizerOptions.hh
ligand_docking / HighResDocker.cckinematics / MoveMap.hh
ligand_docking / HighResDocker.ccpack / task / PackerTask.hh
ligand_docking / HighResDocker.ccpose / Pose.hh
ligand_docking / HighResDocker.ccpack / task / ResfileReader.hh
ligand_docking / HighResDocker.ccconformation / Residue.hh
ligand_docking / HighResDocker.ccchemical / ResidueType.hh
ligand_docking / HighResDocker.ccchemical / ResidueTypeSet.hh
ligand_docking / HighResDocker.ccscoring / ScoreFunction.hh
ligand_docking / HighResDocker.ccpack / task / TaskFactory.hh
ligand_docking / HighResDocker.cctypes.hh
ligand_docking / HighResDocker.ccpack / rotamer_set / UnboundRotamersOperation.hh
ligand_docking / HighResDocker.ccpose / util.hh
ligand_docking / HighResDocker.hhpack / task / PackerTask.fwd.hh
ligand_docking / HighResDocker.hhpose / Pose.fwd.hh
ligand_docking / HighResDocker.hhscoring / ScoreFunction.fwd.hh
ligand_docking / HighResDocker.hhtypes.hh
match / Hit.fwd.hhtypes.hh
match / Hit.hhtypes.hh
simple_filters / HolesFilter.ccscoring / packing / compute_holes_score.hh
simple_filters / HolesFilter.ccpose / Pose.hh
simple_filters / HolesFilter.cctypes.hh
simple_filters / HolesFilter.hhpose / Pose.fwd.hh
protein_interface_design / movers / HotspotDisjointedFoldTreeMover.ccconformation / Conformation.fwd.hh
protein_interface_design / movers / HotspotDisjointedFoldTreeMover.ccconformation / Conformation.hh
protein_interface_design / movers / HotspotDisjointedFoldTreeMover.cckinematics / FoldTree.hh
protein_interface_design / movers / HotspotDisjointedFoldTreeMover.cckinematics / Jump.hh
protein_interface_design / movers / HotspotDisjointedFoldTreeMover.ccpose / Pose.hh
protein_interface_design / movers / HotspotDisjointedFoldTreeMover.ccconformation / Residue.hh
protein_interface_design / movers / HotspotDisjointedFoldTreeMover.ccscoring / ScoreFunction.hh
protein_interface_design / movers / HotspotDisjointedFoldTreeMover.ccpose / selection.hh
protein_interface_design / movers / HotspotDisjointedFoldTreeMover.cckinematics / Stub.hh
protein_interface_design / movers / HotspotDisjointedFoldTreeMover.ccpack / task / TaskFactory.hh
protein_interface_design / movers / HotspotDisjointedFoldTreeMover.hhkinematics / FoldTree.fwd.hh
protein_interface_design / movers / HotspotDisjointedFoldTreeMover.hhpose / Pose.fwd.hh
protein_interface_design / movers / HotspotDisjointedFoldTreeMover.hhscoring / ScoreFunction.fwd.hh
protein_interface_design / movers / HotspotDisjointedFoldTreeMover.hhtypes.hh
protein_interface_design / movers / HotspotHasherMover.ccscoring / ScoreFunction.hh
protein_interface_design / movers / HotspotHasherMover.ccpose / selection.hh
protein_interface_design / movers / HotspotHasherMover.hhpose / Pose.fwd.hh
protein_interface_design / movers / HotspotHasherMover.hhscoring / ScoreFunction.fwd.hh
protein_interface_design / movers / HotspotHasherMover.hhtypes.hh
hotspot_hashing / HotspotStub.ccconformation / Conformation.hh
hotspot_hashing / HotspotStub.ccpose / Pose.hh
hotspot_hashing / HotspotStub.ccconformation / Residue.hh
hotspot_hashing / HotspotStub.cctypes.hh
hotspot_hashing / HotspotStub.ccpose / util.hh
hotspot_hashing / HotspotStub.hhpose / Pose.hh
hotspot_hashing / HotspotStub.hhconformation / Residue.hh
hotspot_hashing / HotspotStub.hhtypes.hh
hotspot_hashing / HotspotStubSet.ccchemical / AA.hh
hotspot_hashing / HotspotStubSet.ccscoring / constraints / AmbiguousConstraint.hh
hotspot_hashing / HotspotStubSet.ccconformation / Atom.hh
hotspot_hashing / HotspotStubSet.ccid / AtomID_Map.hh
hotspot_hashing / HotspotStubSet.ccscoring / constraints / BackboneStubConstraint.hh
hotspot_hashing / HotspotStubSet.ccconformation / Conformation.hh
hotspot_hashing / HotspotStubSet.ccscoring / constraints / Constraint.hh
hotspot_hashing / HotspotStubSet.ccscoring / constraints / ConstraintSet.hh
hotspot_hashing / HotspotStubSet.ccscoring / Energies.hh
hotspot_hashing / HotspotStubSet.ccscoring / methods / EnergyMethodOptions.hh
hotspot_hashing / HotspotStubSet.cckinematics / FoldTree.hh
hotspot_hashing / HotspotStubSet.ccscoring / constraints / HarmonicFunc.hh
hotspot_hashing / HotspotStubSet.ccscoring / hbonds / HBondOptions.hh
hotspot_hashing / HotspotStubSet.ccimport_pose / import_pose.hh
hotspot_hashing / HotspotStubSet.ccpack / pack_rotamers.hh
hotspot_hashing / HotspotStubSet.ccpack / task / PackerTask.fwd.hh
hotspot_hashing / HotspotStubSet.ccpack / task / PackerTask.hh
hotspot_hashing / HotspotStubSet.ccpose / PDBInfo.hh
hotspot_hashing / HotspotStubSet.ccpose / Pose.hh
hotspot_hashing / HotspotStubSet.ccio / pdb / pose_io.hh
hotspot_hashing / HotspotStubSet.ccpose / Remarks.hh
hotspot_hashing / HotspotStubSet.ccpack / task / ResfileReader.hh
hotspot_hashing / HotspotStubSet.ccconformation / Residue.hh
hotspot_hashing / HotspotStubSet.ccconformation / ResidueFactory.hh
hotspot_hashing / HotspotStubSet.ccchemical / ResidueType.hh
hotspot_hashing / HotspotStubSet.ccchemical / ResidueTypeSet.hh
hotspot_hashing / HotspotStubSet.ccscoring / rms_util.hh
hotspot_hashing / HotspotStubSet.ccscoring / sasa.hh
hotspot_hashing / HotspotStubSet.ccscoring / ScoreFunction.hh
hotspot_hashing / HotspotStubSet.ccscoring / ScoreFunctionFactory.hh
hotspot_hashing / HotspotStubSet.ccpack / task / TaskFactory.hh
hotspot_hashing / HotspotStubSet.ccscoring / TenANeighborGraph.hh
hotspot_hashing / HotspotStubSet.cctypes.hh
hotspot_hashing / HotspotStubSet.ccpose / util.hh
hotspot_hashing / HotspotStubSet.hhid / AtomID.fwd.hh
hotspot_hashing / HotspotStubSet.hhscoring / constraints / Constraint.fwd.hh
hotspot_hashing / HotspotStubSet.hhpack / task / PackerTask.fwd.hh
hotspot_hashing / HotspotStubSet.hhpose / Pose.fwd.hh
hotspot_hashing / HotspotStubSet.hhconformation / Residue.fwd.hh
hotspot_hashing / HotspotStubSet.hhscoring / ScoreFunction.fwd.hh
hotspot_hashing / HotspotStubSet.hhscoring / TenANeighborGraph.fwd.hh
hotspot_hashing / HotspotStubSet.hhtypes.hh
toolbox / pose_metric_calculators / HPatchCalculator.ccid / AtomID.hh
toolbox / pose_metric_calculators / HPatchCalculator.ccpose / Pose.hh
toolbox / pose_metric_calculators / HPatchCalculator.ccchemical / ResidueType.hh
toolbox / pose_metric_calculators / HPatchCalculator.ccpack / interaction_graph / SurfacePotential.hh
toolbox / pose_metric_calculators / HPatchCalculator.hhid / AtomID.fwd.hh
toolbox / pose_metric_calculators / HPatchCalculator.hhpose / Pose.fwd.hh
toolbox / pose_metric_calculators / HPatchCalculator.hhpose / metrics / PoseMetricCalculatorBase.hh
toolbox / pose_metric_calculators / HPatchCalculator.hhtypes.hh
canonical_sampling / mc_convergence_checks / HPool.ccio / silent / SilentFileData.hh
canonical_sampling / mc_convergence_checks / HPool.hhpose / Pose.hh
fldsgn / potentials / sspot / HSPairPotential.ccscoring / Energies.hh
fldsgn / potentials / sspot / HSPairPotential.ccscoring / EnergyGraph.hh
fldsgn / potentials / sspot / HSPairPotential.cckinematics / Jump.hh
fldsgn / potentials / sspot / HSPairPotential.ccpose / Pose.hh
fldsgn / potentials / sspot / HSPairPotential.ccconformation / Residue.hh
fldsgn / potentials / sspot / HSPairPotential.hhscoring / EnergyGraph.fwd.hh
fldsgn / potentials / sspot / HSPairPotential.hhpose / Pose.fwd.hh
fldsgn / potentials / sspot / HSPairPotential.hhtypes.hh
fldsgn / topology / HSSTriplet.hhtypes.hh
fldsgn / filters / HSSTripletFilter.ccscoring / dssp / Dssp.hh
fldsgn / filters / HSSTripletFilter.ccpose / Pose.hh
fldsgn / filters / HSSTripletFilter.cctypes.hh
fldsgn / filters / HSSTripletFilter.hhpose / Pose.fwd.hh
hybridization / HybridizeFoldtreeDynamic.ccconformation / Conformation.hh
hybridization / HybridizeFoldtreeDynamic.cckinematics / FoldTree.hh
hybridization / HybridizeFoldtreeDynamic.ccimport_pose / import_pose.hh
hybridization / HybridizeFoldtreeDynamic.ccutil / kinematics_util.hh
hybridization / HybridizeFoldtreeDynamic.ccpack / task / PackerTask.hh
hybridization / HybridizeFoldtreeDynamic.ccpose / Pose.hh
hybridization / HybridizeFoldtreeDynamic.ccscoring / rms_util.hh
hybridization / HybridizeFoldtreeDynamic.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
hybridization / HybridizeFoldtreeDynamic.ccconformation / symmetry / SymmetricConformation.hh
hybridization / HybridizeFoldtreeDynamic.ccconformation / symmetry / SymmetryInfo.hh
hybridization / HybridizeFoldtreeDynamic.cctypes.hh
hybridization / HybridizeFoldtreeDynamic.ccconformation / symmetry / util.hh
hybridization / HybridizeFoldtreeDynamic.ccpose / symmetry / util.hh
hybridization / HybridizeFoldtreeDynamic.ccpose / util.hh
hybridization / HybridizeFoldtreeDynamic.hhkinematics / FoldTree.hh
hybridization / HybridizeFoldtreeDynamic.hhpose / Pose.fwd.hh
hybridization / HybridizeFoldtreeDynamic.hhtypes.hh
hybridization / HybridizeProtocol.ccpose / datacache / CacheableDataType.hh
hybridization / HybridizeProtocol.ccoptimization / CartesianMinimizer.hh
hybridization / HybridizeProtocol.ccchemical / ChemicalManager.hh
hybridization / HybridizeProtocol.ccfragment / ConstantLengthFragSet.hh
hybridization / HybridizeProtocol.ccscoring / constraints / Constraint.hh
hybridization / HybridizeProtocol.ccscoring / constraints / ConstraintIO.hh
hybridization / HybridizeProtocol.ccscoring / constraints / ConstraintSet.hh
hybridization / HybridizeProtocol.ccscoring / constraints / CoordinateConstraint.hh
hybridization / HybridizeProtocol.ccscoring / dssp / Dssp.hh
hybridization / HybridizeProtocol.cckinematics / FoldTree.hh
hybridization / HybridizeProtocol.ccfragment / FragData.hh
hybridization / HybridizeProtocol.ccfragment / FragmentIO.hh
hybridization / HybridizeProtocol.ccfragment / FragSet.hh
hybridization / HybridizeProtocol.ccfragment / Frame.hh
hybridization / HybridizeProtocol.ccfragment / FrameIterator.hh
hybridization / HybridizeProtocol.ccscoring / constraints / HarmonicFunc.hh
hybridization / HybridizeProtocol.ccimport_pose / import_pose.hh
hybridization / HybridizeProtocol.ccfragment / IndependentBBTorsionSRFD.hh
hybridization / HybridizeProtocol.ccoptimization / MinimizerOptions.hh
hybridization / HybridizeProtocol.cckinematics / MoveMap.hh
hybridization / HybridizeProtocol.ccpack / task / operation / NoRepackDisulfides.hh
hybridization / HybridizeProtocol.ccpack / task / operation / OperateOnCertainResidues.hh
hybridization / HybridizeProtocol.ccpack / task / PackerTask.hh
hybridization / HybridizeProtocol.ccpose / PDBInfo.hh
hybridization / HybridizeProtocol.ccpose / Pose.hh
hybridization / HybridizeProtocol.ccpack / task / operation / ResFilters.hh
hybridization / HybridizeProtocol.ccconformation / Residue.hh
hybridization / HybridizeProtocol.ccconformation / ResidueFactory.hh
hybridization / HybridizeProtocol.ccchemical / ResidueType.hh
hybridization / HybridizeProtocol.ccchemical / ResidueTypeSet.hh
hybridization / HybridizeProtocol.ccpack / task / operation / ResLvlTaskOperations.hh
hybridization / HybridizeProtocol.ccscoring / rms_util.hh
hybridization / HybridizeProtocol.ccscoring / ScoreFunctionFactory.hh
hybridization / HybridizeProtocol.ccpose / selection.hh
hybridization / HybridizeProtocol.ccio / silent / SilentStruct.hh
hybridization / HybridizeProtocol.ccio / silent / SilentStructFactory.hh
hybridization / HybridizeProtocol.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
hybridization / HybridizeProtocol.ccconformation / symmetry / SymmetricConformation.hh
hybridization / HybridizeProtocol.ccconformation / symmetry / SymmetryInfo.hh
hybridization / HybridizeProtocol.ccpack / task / TaskFactory.hh
hybridization / HybridizeProtocol.ccpack / task / operation / TaskOperation.hh
hybridization / HybridizeProtocol.ccpack / task / operation / TaskOperations.hh
hybridization / HybridizeProtocol.ccpose / symmetry / util.hh
hybridization / HybridizeProtocol.ccscoring / constraints / util.hh
hybridization / HybridizeProtocol.ccsequence / util.hh
hybridization / HybridizeProtocol.ccfragment / util.hh
hybridization / HybridizeProtocol.ccpose / util.hh
hybridization / HybridizeProtocol.ccfragment / picking_old / vall / util.hh
hybridization / HybridizeProtocol.hhscoring / constraints / ConstraintSet.fwd.hh
hybridization / HybridizeProtocol.hhfragment / FragSet.fwd.hh
hybridization / HybridizeProtocol.hhpose / Pose.fwd.hh
hybridization / HybridizeProtocol.hhsequence / SequenceAlignment.fwd.hh
hybridization / HybridizeProtocol.hhsequence / SequenceAlignment.hh
hybridization / HybridizeProtocol.hhpack / task / TaskFactory.fwd.hh
frag_picker / scores / HydrophobicityProfileSimilarity.ccchemical / AA.hh
frag_picker / scores / HydrophobicityProfileSimilarity.cctypes.hh
frag_picker / scores / HydrophobicityProfileSimilarity.hhsequence / SequenceProfile.hh
frag_picker / scores / HydrophobicityProfileSimilarity.hhtypes.hh
frag_picker / scores / HydrophobicitySimilarity.cctypes.hh
frag_picker / scores / HydrophobicitySimilarity.hhtypes.hh
idealize / idealize.ccoptimization / AtomTreeMinimizer.hh
idealize / idealize.ccconformation / Conformation.hh
idealize / idealize.cckinematics / FoldTree.hh
idealize / idealize.ccoptimization / MinimizerOptions.hh
idealize / idealize.cckinematics / MoveMap.hh
idealize / idealize.ccpose / PDBInfo.hh
idealize / idealize.ccpose / Pose.hh
idealize / idealize.ccchemical / ResidueTypeSet.hh
idealize / idealize.ccscoring / rms_util.hh
idealize / idealize.ccscoring / ScoreFunction.hh
idealize / idealize.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
idealize / idealize.ccconformation / symmetry / SymmetricConformation.hh
idealize / idealize.ccconformation / symmetry / SymmetryInfo.hh
idealize / idealize.cctypes.hh
idealize / idealize.ccpose / symmetry / util.hh
idealize / idealize.ccpose / util.hh
idealize / idealize.ccconformation / util.hh
idealize / idealize.ccchemical / VariantType.hh
idealize / idealize.hhpose / Pose.fwd.hh
idealize / idealize.hhscoring / ScoreFunction.fwd.hh
idealize / idealize.hhtypes.hh
idealize / IdealizeMover.ccscoring / constraints / AtomPairConstraint.hh
idealize / IdealizeMover.ccchemical / AtomType.hh
idealize / IdealizeMover.ccconformation / Conformation.hh
idealize / IdealizeMover.ccscoring / constraints / ConstraintSet.hh
idealize / IdealizeMover.ccscoring / constraints / CoordinateConstraint.hh
idealize / IdealizeMover.cckinematics / FoldTree.hh
idealize / IdealizeMover.ccscoring / constraints / HarmonicFunc.hh
idealize / IdealizeMover.ccpose / Pose.hh
idealize / IdealizeMover.ccconformation / ResidueFactory.hh
idealize / IdealizeMover.ccchemical / ResidueTypeSet.hh
idealize / IdealizeMover.ccscoring / rms_util.hh
idealize / IdealizeMover.ccscoring / ScoreFunction.hh
idealize / IdealizeMover.ccpose / selection.hh
idealize / IdealizeMover.ccconformation / symmetry / SymmetricConformation.hh
idealize / IdealizeMover.ccscoring / symmetry / SymmetricScoreFunction.hh
idealize / IdealizeMover.ccconformation / symmetry / SymmetryInfo.hh
idealize / IdealizeMover.cctypes.hh
idealize / IdealizeMover.ccpose / symmetry / util.hh
idealize / IdealizeMover.hhpose / Pose.fwd.hh
idealize / IdealizeMover.hhtypes.hh
moves / IfMover.ccpose / Pose.hh
moves / IfMover.hhpose / Pose.fwd.hh
toolbox / IGEdgeReweighters.ccpack / task / PackerTask.hh
toolbox / IGEdgeReweighters.ccpose / Pose.hh
toolbox / IGEdgeReweighters.ccconformation / Residue.hh
toolbox / IGEdgeReweighters.hhpack / task / IGEdgeReweightContainer.hh
comparative_modeling / IgnoreSubsetConstraintSet.ccscoring / constraints / ConstraintSet.hh
comparative_modeling / IgnoreSubsetConstraintSet.ccconformation / Residue.hh
comparative_modeling / IgnoreSubsetConstraintSet.cctypes.hh
comparative_modeling / IgnoreSubsetConstraintSet.hhscoring / constraints / ConstraintSet.hh
comparative_modeling / IgnoreSubsetConstraintSet.hhpose / Pose.fwd.hh
comparative_modeling / IgnoreSubsetConstraintSet.hhscoring / ScoreFunction.fwd.hh
comparative_modeling / IgnoreSubsetConstraintSet.hhtypes.hh
scoring / ImplicitFastClashCheck.ccid / AtomID.hh
scoring / ImplicitFastClashCheck.ccpose / Pose.hh
scoring / ImplicitFastClashCheck.ccconformation / Residue.hh
scoring / ImplicitFastClashCheck.cckinematics / Stub.hh
scoring / ImplicitFastClashCheck.hhpose / Pose.fwd.hh
scoring / ImplicitFastClashCheck.hhkinematics / Stub.fwd.hh
scoring / ImplicitFastClashCheck.hhtypes.hh
loops / loop_mover / IndependentLoopMover.cckinematics / FoldTree.hh
loops / loop_mover / IndependentLoopMover.ccpose / Pose.hh
loops / loop_mover / IndependentLoopMover.ccscoring / ScoreFunction.hh
loops / loop_mover / IndependentLoopMover.hhpose / Pose.fwd.hh
loops / loop_mover / IndependentLoopMover.hhtypes.hh
init / init.ccinit.hh
jd2 / InnerJob.ccpose / Pose.hh
jd2 / InnerJob.ccpose / util.hh
jd2 / InnerJob.hhpose / Pose.fwd.hh
jd2 / InnerJob.hhtypes.hh
jd2 / InnerMultiThreadingJob.ccpose / Pose.hh
jd2 / InnerMultiThreadingJob.hhpose / Pose.fwd.hh
jd2 / InnerMultiThreadingJob.hhsequence / SequenceAlignment.fwd.hh
jd2 / InnerMultiThreadingJob.hhtypes.hh
swa / InputStreamWithResidueInfo.ccimport_pose / pose_stream / ExtendedPoseInputStream.hh
swa / InputStreamWithResidueInfo.ccimport_pose / pose_stream / PDBPoseInputStream.hh
swa / InputStreamWithResidueInfo.ccpose / Pose.hh
swa / InputStreamWithResidueInfo.ccimport_pose / pose_stream / PoseInputStream.fwd.hh
swa / InputStreamWithResidueInfo.ccchemical / ResidueType.hh
swa / InputStreamWithResidueInfo.ccscoring / rms_util.hh
swa / InputStreamWithResidueInfo.ccimport_pose / pose_stream / SilentFilePoseInputStream.hh
swa / InputStreamWithResidueInfo.cctypes.hh
swa / InputStreamWithResidueInfo.ccpose / util.hh
swa / InputStreamWithResidueInfo.hhpose / Pose.fwd.hh
swa / InputStreamWithResidueInfo.hhimport_pose / pose_stream / PoseInputStream.fwd.hh
swa / InputStreamWithResidueInfo.hhchemical / ResidueTypeSet.fwd.hh
swa / InputStreamWithResidueInfo.hhtypes.hh
inputter / Inputter.hhpose / Pose.fwd.hh
inputter / InputterStream.hhpose / Pose.fwd.hh
hybridization / InsertChunkMover.ccid / AtomID.hh
hybridization / InsertChunkMover.ccid / AtomID_Map.hh
hybridization / InsertChunkMover.cckinematics / AtomTree.hh
hybridization / InsertChunkMover.ccpose / datacache / CacheableDataType.hh
hybridization / InsertChunkMover.ccfragment / Frame.hh
hybridization / InsertChunkMover.ccfragment / FrameIterator.hh
hybridization / InsertChunkMover.ccutil / kinematics_util.hh
hybridization / InsertChunkMover.ccpose / Pose.hh
hybridization / InsertChunkMover.ccconformation / Residue.hh
hybridization / InsertChunkMover.ccconformation / util.hh
hybridization / InsertChunkMover.ccpose / util.hh
hybridization / InsertChunkMover.ccpose / util.tmpl.hh
hybridization / InsertChunkMover.hhid / AtomID.hh
hybridization / InsertChunkMover.hhid / AtomID_Map.hh
hybridization / InsertChunkMover.hhfragment / Frame.hh
hybridization / InsertChunkMover.hhfragment / FrameIterator.hh
hybridization / InsertChunkMover.hhutil / kinematics_util.hh
hybridization / InsertChunkMover.hhpose / Pose.fwd.hh
hybridization / InsertChunkMover.hhpose / Pose.hh
toolbox / InteratomicVarianceMatrix.cctypes.hh
toolbox / InteratomicVarianceMatrix.hhtypes.hh
frag_picker / scores / InterbondAngleScore.ccscoring / constraints / Func.hh
frag_picker / scores / InterbondAngleScore.ccscoring / constraints / FuncFactory.hh
frag_picker / scores / InterbondAngleScore.ccscoring / constraints / MinMultiHarmonicFunc.hh
frag_picker / scores / InterbondAngleScore.hhscoring / constraints / FuncFactory.hh
scoring / methods / InterchainEnvEnergy.ccscoring / EnergyMap.hh
scoring / methods / InterchainEnvEnergy.ccpose / Pose.hh
scoring / methods / InterchainEnvEnergy.hhscoring / methods / ContextDependentOneBodyEnergy.hh
scoring / methods / InterchainEnvEnergy.hhpose / Pose.fwd.hh
scoring / methods / InterchainEnvEnergy.hhconformation / Residue.fwd.hh
scoring / methods / InterchainEnvEnergy.hhscoring / ScoreFunction.fwd.hh
scoring / methods / InterchainEnvEnergyCreator.hhscoring / methods / EnergyMethodCreator.hh
scoring / methods / InterchainEnvEnergyCreator.hhtypes.hh
scoring / methods / InterchainPairEnergy.ccscoring / EnergyMap.hh
scoring / methods / InterchainPairEnergy.ccpose / Pose.hh
scoring / methods / InterchainPairEnergy.hhscoring / methods / ContextIndependentTwoBodyEnergy.hh
scoring / methods / InterchainPairEnergy.hhpose / Pose.fwd.hh
scoring / methods / InterchainPairEnergy.hhconformation / Residue.fwd.hh
scoring / methods / InterchainPairEnergy.hhscoring / ScoreFunction.fwd.hh
scoring / methods / InterchainPairEnergyCreator.hhscoring / methods / EnergyMethodCreator.hh
scoring / InterchainPotential.ccchemical / AA.hh
scoring / InterchainPotential.ccconformation / Atom.hh
scoring / InterchainPotential.ccscoring / AtomVDW.hh
scoring / InterchainPotential.ccpose / datacache / CacheableDataType.hh
scoring / InterchainPotential.ccchemical / ChemicalManager.fwd.hh
scoring / InterchainPotential.ccscoring / EnvPairPotential.hh
scoring / InterchainPotential.ccpose / Pose.hh
scoring / InterchainPotential.ccconformation / Residue.hh
scoring / InterchainPotential.ccscoring / ScoringManager.hh
scoring / InterchainPotential.hhscoring / AtomVDW.fwd.hh
scoring / InterchainPotential.hhscoring / EnvPairPotential.hh
scoring / InterchainPotential.hhconformation / Residue.fwd.hh
scoring / InterchainPotential.hhtypes.hh
scoring / Interface.ccscoring / EnergyGraph.hh
scoring / Interface.cckinematics / FoldTree.hh
scoring / Interface.ccpack / task / PackerTask.hh
scoring / Interface.ccpose / Pose.hh
scoring / Interface.ccconformation / Residue.hh
scoring / Interface.ccconformation / symmetry / SymmetricConformation.hh
scoring / Interface.ccscoring / symmetry / SymmetricEnergies.fwd.hh
scoring / Interface.ccscoring / symmetry / SymmetricEnergies.hh
scoring / Interface.ccconformation / symmetry / SymmetryInfo.hh
ligand_docking / ligand_options / Interface.cctypes.hh
scoring / Interface.ccpose / symmetry / util.hh
scoring / Interface.hhpack / task / PackerTask.fwd.hh
scoring / Interface.hhpose / Pose.fwd.hh
scoring / Interface.hhconformation / Residue.fwd.hh
scoring / Interface.hhtypes.hh
ligand_docking / ligand_options / Interface.hhtypes.hh
ligand_docking / ligand_options / interface_distance_functions.ccconformation / Residue.hh
ligand_docking / ligand_options / interface_distance_functions.cctypes.hh
ligand_docking / ligand_options / interface_distance_functions.hhconformation / Residue.fwd.hh
ligand_docking / ligand_options / interface_distance_functions.hhtypes.hh
analysis / InterfaceAnalyzerMover.ccpose / metrics / CalculatorFactory.hh
analysis / InterfaceAnalyzerMover.ccchemical / ChemicalManager.fwd.hh
analysis / InterfaceAnalyzerMover.ccscoring / packstat / compute_sasa.hh
analysis / InterfaceAnalyzerMover.ccconformation / Conformation.hh
analysis / InterfaceAnalyzerMover.ccscoring / Energies.hh
analysis / InterfaceAnalyzerMover.ccscoring / methods / EnergyMethodOptions.hh
analysis / InterfaceAnalyzerMover.cckinematics / FoldTree.hh
analysis / InterfaceAnalyzerMover.ccscoring / hbonds / HBondOptions.hh
analysis / InterfaceAnalyzerMover.ccscoring / hbonds / HBondSet.hh
analysis / InterfaceAnalyzerMover.ccpose / metrics / simple_calculators / InterfaceDeltaEnergeticsCalculator.hh
analysis / InterfaceAnalyzerMover.ccpose / metrics / simple_calculators / InterfaceNeighborDefinitionCalculator.hh
analysis / InterfaceAnalyzerMover.ccpose / metrics / simple_calculators / InterfaceSasaDefinitionCalculator.hh
analysis / InterfaceAnalyzerMover.ccpack / task / PackerTask.hh
analysis / InterfaceAnalyzerMover.ccpose / PDBInfo.hh
analysis / InterfaceAnalyzerMover.ccpose / Pose.hh
analysis / InterfaceAnalyzerMover.ccconformation / Residue.hh
analysis / InterfaceAnalyzerMover.ccscoring / sasa.hh
analysis / InterfaceAnalyzerMover.ccpose / metrics / simple_calculators / SasaCalculator.hh
analysis / InterfaceAnalyzerMover.ccscoring / ScoreFunction.hh
analysis / InterfaceAnalyzerMover.ccscoring / ScoreFunctionFactory.hh
analysis / InterfaceAnalyzerMover.ccscoring / ScoreType.hh
analysis / InterfaceAnalyzerMover.ccscoring / sc / ShapeComplementarityCalculator.hh
analysis / InterfaceAnalyzerMover.ccutil / SwitchResidueTypeSet.hh
analysis / InterfaceAnalyzerMover.ccpack / task / TaskFactory.hh
analysis / InterfaceAnalyzerMover.ccpack / task / operation / TaskOperations.hh
analysis / InterfaceAnalyzerMover.cctypes.hh
analysis / InterfaceAnalyzerMover.hhid / AtomID.fwd.hh
analysis / InterfaceAnalyzerMover.hhpack / task / PackerTask.fwd.hh
analysis / InterfaceAnalyzerMover.hhpose / Pose.fwd.hh
analysis / InterfaceAnalyzerMover.hhscoring / ScoreFunction.hh
analysis / InterfaceAnalyzerMover.hhtypes.hh
simple_filters / InterfaceBindingEnergyDensityFilter.cctypes.hh
simple_filters / InterfaceBindingEnergyDensityFilter.hhpose / Pose.fwd.hh
simple_filters / InterfaceBindingEnergyDensityFilter.hhscoring / ScoreType.hh
simple_filters / InterfaceBindingEnergyDensityFilter.hhtypes.hh
ligand_docking / InterfaceBuilder.ccconformation / Conformation.hh
ligand_docking / InterfaceBuilder.ccpose / Pose.hh
ligand_docking / InterfaceBuilder.cctypes.hh
ligand_docking / InterfaceBuilder.ccpose / util.hh
ligand_docking / InterfaceBuilder.hhpose / Pose.fwd.hh
ligand_docking / InterfaceBuilder.hhconformation / Residue.fwd.hh
ligand_docking / InterfaceBuilder.hhtypes.hh
protein_interface_design / filters / InterfaceHolesFilter.ccscoring / Energies.hh
protein_interface_design / filters / InterfaceHolesFilter.ccpose / Pose.hh
protein_interface_design / filters / InterfaceHolesFilter.ccscoring / ScoreFunction.hh
protein_interface_design / filters / InterfaceHolesFilter.cctypes.hh
protein_interface_design / filters / InterfaceHolesFilter.hhpose / Pose.fwd.hh
protein_interface_design / filters / InterfaceHolesFilter.hhtypes.hh
scoring / InterfaceInfo.ccchemical / AA.hh
scoring / InterfaceInfo.ccscoring / EnvPairPotential.hh
scoring / InterfaceInfo.ccconformation / Residue.hh
scoring / InterfaceInfo.hhconformation / Residue.fwd.hh
scoring / InterfaceInfo.hhtypes.hh
protein_interface_design / movers / InterfaceRecapitulationMover.ccpack / task / PackerTask.hh
protein_interface_design / movers / InterfaceRecapitulationMover.ccpose / Pose.hh
protein_interface_design / movers / InterfaceRecapitulationMover.ccscoring / ScoreFunction.hh
protein_interface_design / movers / InterfaceRecapitulationMover.ccscoring / ScoreFunctionFactory.hh
protein_interface_design / movers / InterfaceRecapitulationMover.ccscoring / ScoreType.hh
protein_interface_design / movers / InterfaceRecapitulationMover.cctypes.hh
protein_interface_design / movers / InterfaceRecapitulationMover.hhpose / Pose.fwd.hh
simple_filters / InterfaceSasaFilter.ccid / AtomID_Map.hh
simple_filters / InterfaceSasaFilter.ccchemical / AtomType.hh
simple_filters / InterfaceSasaFilter.ccpose / Pose.hh
simple_filters / InterfaceSasaFilter.ccconformation / Residue.hh
simple_filters / InterfaceSasaFilter.ccconformation / symmetry / SymmetryInfo.hh
simple_filters / InterfaceSasaFilter.cctypes.hh
simple_filters / InterfaceSasaFilter.ccpose / symmetry / util.hh
simple_filters / InterfaceSasaFilter.hhpose / Pose.fwd.hh
simple_filters / InterfaceSasaFilter.hhscoring / ScoreType.hh
simple_filters / InterfaceSasaFilter.hhtypes.hh
ligand_docking / InterfaceScoreCalculator.ccscoring / Energies.hh
ligand_docking / InterfaceScoreCalculator.ccimport_pose / import_pose.hh
ligand_docking / InterfaceScoreCalculator.ccpose / Pose.hh
ligand_docking / InterfaceScoreCalculator.ccscoring / ScoreFunction.hh
ligand_docking / InterfaceScoreCalculator.cctypes.hh
ligand_docking / InterfaceScoreCalculator.ccpose / util.hh
ligand_docking / InterfaceScoreCalculator.hhscoring / ScoreFunction.fwd.hh
toolbox / task_operations / InterfaceTaskOperation.hhpack / task / operation / TaskOperation.hh
toolbox / task_operations / InterfaceTaskOperation.hhtypes.hh
toolbox / pose_metric_calculators / InterGroupNeighborsCalculator.ccconformation / find_neighbors.hh
toolbox / pose_metric_calculators / InterGroupNeighborsCalculator.ccgraph / Graph.hh
toolbox / pose_metric_calculators / InterGroupNeighborsCalculator.ccconformation / PointGraph.hh
toolbox / pose_metric_calculators / InterGroupNeighborsCalculator.ccconformation / PointGraphData.hh
toolbox / pose_metric_calculators / InterGroupNeighborsCalculator.ccpose / Pose.hh
toolbox / pose_metric_calculators / InterGroupNeighborsCalculator.ccgraph / UpperEdgeGraph.hh
toolbox / pose_metric_calculators / InterGroupNeighborsCalculator.hhpose / Pose.fwd.hh
toolbox / pose_metric_calculators / InterGroupNeighborsCalculator.hhpose / metrics / PoseMetricCalculatorBase.hh
toolbox / pose_metric_calculators / InterGroupNeighborsCalculator.hhtypes.hh
flxbb / InterlockAroma.ccscoring / dssp / Dssp.hh
flxbb / InterlockAroma.ccscoring / Energies.hh
flxbb / InterlockAroma.ccgraph / Graph.hh
flxbb / InterlockAroma.ccpack / task / PackerTask.hh
flxbb / InterlockAroma.ccpose / Pose.hh
flxbb / InterlockAroma.ccpack / rotamer_set / RotamerSet.hh
flxbb / InterlockAroma.ccpack / rotamer_set / RotamerSetFactory.hh
flxbb / InterlockAroma.ccscoring / ScoreFunction.hh
flxbb / InterlockAroma.ccscoring / ScoreFunctionFactory.hh
flxbb / InterlockAroma.ccscoring / ScoreType.hh
flxbb / InterlockAroma.ccpack / task / TaskFactory.hh
flxbb / InterlockAroma.hhpose / Pose.fwd.hh
flxbb / InterlockAroma.hhscoring / ScoreFunction.fwd.hh
flxbb / InterlockAroma.hhtypes.hh
fldsgn / filters / InterlockingAromaFilter.ccchemical / AA.hh
fldsgn / filters / InterlockingAromaFilter.ccchemical / AtomType.hh
fldsgn / filters / InterlockingAromaFilter.ccscoring / dssp / Dssp.hh
fldsgn / filters / InterlockingAromaFilter.ccscoring / Energies.hh
fldsgn / filters / InterlockingAromaFilter.cckinematics / Jump.hh
fldsgn / filters / InterlockingAromaFilter.ccpose / Pose.hh
fldsgn / filters / InterlockingAromaFilter.ccconformation / Residue.hh
fldsgn / filters / InterlockingAromaFilter.ccscoring / TenANeighborGraph.hh
fldsgn / filters / InterlockingAromaFilter.hhpose / Pose.fwd.hh
fldsgn / filters / InterlockingAromaFilter.hhtypes.hh
forge / build / Interval.hhtypes.hh
forge / constraints / InverseRotamersRCG.ccscoring / constraints / AmbiguousConstraint.hh
forge / constraints / InverseRotamersRCG.ccscoring / constraints / BoundConstraint.hh
forge / constraints / InverseRotamersRCG.ccpose / Pose.hh
forge / constraints / InverseRotamersRCG.ccconformation / Residue.hh
forge / constraints / InverseRotamersRCG.ccid / SequenceMapping.hh
forge / constraints / InverseRotamersRCG.hhscoring / constraints / Func.fwd.hh
forge / constraints / InverseRotamersRCG.hhpose / Pose.fwd.hh
forge / constraints / InverseRotamersRCG.hhconformation / Residue.fwd.hh
forge / constraints / InverseRotamersRCG.hhtypes.hh
toolbox / match_enzdes_util / InvrotTarget.ccscoring / constraints / MultiConstraint.hh
toolbox / match_enzdes_util / InvrotTarget.ccpose / Pose.hh
toolbox / match_enzdes_util / InvrotTarget.ccconformation / Residue.hh
toolbox / match_enzdes_util / InvrotTree.ccpack / rotamer_set / bb_independent_rotamers.hh
toolbox / match_enzdes_util / InvrotTree.ccscoring / constraints / Constraint.hh
toolbox / match_enzdes_util / InvrotTree.ccpose / Pose.hh
toolbox / match_enzdes_util / InvrotTree.ccio / pdb / pose_io.hh
toolbox / match_enzdes_util / InvrotTree.ccconformation / Residue.hh
toolbox / match_enzdes_util / InvrotTree.ccconformation / ResidueFactory.hh
toolbox / match_enzdes_util / InvrotTree.ccchemical / ResidueType.hh
toolbox / match_enzdes_util / InvrotTree.hhscoring / constraints / Constraint.fwd.hh
toolbox / match_enzdes_util / InvrotTree.hhpose / Pose.fwd.hh
toolbox / match_enzdes_util / InvrotTree.hhtypes.hh
toolbox / match_enzdes_util / InvrotTreeNode.ccscoring / constraints / AmbiguousConstraint.hh
toolbox / match_enzdes_util / InvrotTreeNode.ccconformation / Atom.hh
toolbox / match_enzdes_util / InvrotTreeNode.ccscoring / constraints / MultiConstraint.hh
toolbox / match_enzdes_util / InvrotTreeNode.ccpose / Pose.hh
toolbox / match_enzdes_util / InvrotTreeNode.ccconformation / Residue.hh
toolbox / match_enzdes_util / InvrotTreeNode.hhid / AtomID.fwd.hh
toolbox / match_enzdes_util / InvrotTreeNodeBase.ccconformation / Residue.hh
toolbox / match_enzdes_util / InvrotTreeNodeBase.hhscoring / constraints / Constraint.fwd.hh
toolbox / match_enzdes_util / InvrotTreeNodeBase.hhpose / Pose.fwd.hh
toolbox / match_enzdes_util / InvrotTreeNodeBase.hhconformation / Residue.fwd.hh
toolbox / match_enzdes_util / InvrotTreeNodeBase.hhtypes.hh
forge / constraints / InvrotTreeRCG.ccchemical / ChemicalManager.hh
forge / constraints / InvrotTreeRCG.ccscoring / constraints / Constraint.hh
forge / constraints / InvrotTreeRCG.ccpose / Pose.hh
forge / constraints / InvrotTreeRCG.hhpose / Pose.fwd.hh
forge / constraints / InvrotTreeRCG.hhtypes.hh
motifs / IRCollection.ccscoring / constraints / ConstraintSet.hh
motifs / IRCollection.ccscoring / Energies.hh
motifs / IRCollection.ccscoring / methods / EnergyMethodOptions.hh
motifs / IRCollection.ccscoring / hbonds / HBondOptions.hh
motifs / IRCollection.ccpose / PDBInfo.hh
motifs / IRCollection.ccpose / Pose.hh
motifs / IRCollection.ccconformation / Residue.hh
motifs / IRCollection.ccpack / rotamer_set / RotamerSet.hh
motifs / IRCollection.ccscoring / ScoreFunction.hh
motifs / IRCollection.ccscoring / ScoreFunctionFactory.hh
motifs / IRCollection.ccscoring / ScoreType.hh
motifs / IRCollection.cctypes.hh
motifs / IRCollection.hhpose / Pose.fwd.hh
motifs / IRCollection.hhconformation / Residue.fwd.hh
motifs / IRCollection.hhpack / rotamer_set / RotamerSet.fwd.hh
motifs / IRCollection.hhtypes.hh
moves / IteratedConvergenceMover.hhpose / Pose.fwd.hh
abinitio / IterativeAbrelax.ccpose / Pose.hh
abinitio / IterativeAbrelax.ccscoring / ScoreFunction.fwd.hh
abinitio / IterativeAbrelax.ccio / silent / SilentFileData.hh
abinitio / IterativeAbrelax.ccio / silent / SilentStruct.hh
abinitio / IterativeAbrelax.cctypes.hh
abinitio / IterativeAbrelax.hhpose / Pose.fwd.hh
abinitio / IterativeAbrelax.hhtypes.hh
abinitio / IterativeBase.ccpose / annotated_sequence.hh
abinitio / IterativeBase.ccchemical / ChemicalManager.hh
abinitio / IterativeBase.ccfragment / ConstantLengthFragSet.hh
abinitio / IterativeBase.ccscoring / constraints / ConstraintIO.hh
abinitio / IterativeBase.ccscoring / constraints / ConstraintSet.hh
abinitio / IterativeBase.ccscoring / Energies.hh
abinitio / IterativeBase.ccfragment / FragmentIO.hh
abinitio / IterativeBase.ccimport_pose / import_pose.hh
abinitio / IterativeBase.ccpose / Pose.hh
abinitio / IterativeBase.ccscoring / ResidualDipolarCoupling.hh
abinitio / IterativeBase.ccscoring / ScoreFunction.fwd.hh
abinitio / IterativeBase.ccscoring / ScoreFunctionFactory.hh
abinitio / IterativeBase.ccscoring / ScoreType.hh
abinitio / IterativeBase.ccfragment / SecondaryStructure.hh
abinitio / IterativeBase.ccsequence / Sequence.hh
abinitio / IterativeBase.ccio / silent / SilentFileData.hh
abinitio / IterativeBase.ccio / silent / SilentStruct.hh
abinitio / IterativeBase.cctypes.hh
abinitio / IterativeBase.ccsequence / util.hh
abinitio / IterativeBase.ccfragment / util.hh
abinitio / IterativeBase.ccscoring / constraints / util.hh
abinitio / IterativeBase.ccpose / util.hh
abinitio / IterativeBase.hhfragment / FragSet.fwd.hh
abinitio / IterativeBase.hhpose / Pose.fwd.hh
abinitio / IterativeBase.hhtypes.hh
abinitio / IterativeCentroid.ccscoring / ScoreFunction.fwd.hh
abinitio / IterativeCentroid.cctypes.hh
abinitio / IterativeFullatom.ccscoring / ScoreFunction.fwd.hh
abinitio / IterativeFullatom.ccscoring / ScoreFunction.hh
abinitio / IterativeFullatom.ccscoring / ScoreFunctionFactory.hh
abinitio / IterativeFullatom.ccio / silent / SilentFileData.hh
abinitio / IterativeFullatom.ccio / silent / SilentStruct.hh
abinitio / IterativeFullatom.cctypes.hh
abinitio / IterativeFullatom.hhpose / Pose.fwd.hh
abinitio / IterativeFullatom.hhtypes.hh
optimize_weights / IterativeOptEDriver.ccchemical / AA.hh
optimize_weights / IterativeOptEDriver.ccchemical / ChemicalManager.hh
optimize_weights / IterativeOptEDriver.ccscoring / Energies.hh
optimize_weights / IterativeOptEDriver.ccscoring / methods / EnergyMethodOptions.hh
optimize_weights / IterativeOptEDriver.cckinematics / FoldTree.hh
optimize_weights / IterativeOptEDriver.ccgraph / Graph.hh
optimize_weights / IterativeOptEDriver.ccscoring / hbonds / HBondOptions.hh
optimize_weights / IterativeOptEDriver.ccimport_pose / import_pose.hh
optimize_weights / IterativeOptEDriver.ccoptimization / Minimizer.hh
optimize_weights / IterativeOptEDriver.ccoptimization / MinimizerOptions.hh
optimize_weights / IterativeOptEDriver.ccscoring / mm / MMTorsionLibrary.fwd.hh
optimize_weights / IterativeOptEDriver.ccoptimization / Multifunc.hh
optimize_weights / IterativeOptEDriver.ccpack / packer_neighbors.hh
optimize_weights / IterativeOptEDriver.ccpack / task / PackerTask.hh
optimize_weights / IterativeOptEDriver.ccoptimization / ParticleSwarmMinimizer.hh
optimize_weights / IterativeOptEDriver.ccpose / PDBInfo.hh
optimize_weights / IterativeOptEDriver.ccpose / Pose.hh
optimize_weights / IterativeOptEDriver.ccpack / task / operation / ReplicateTask.hh
optimize_weights / IterativeOptEDriver.ccpack / task / ResfileReader.hh
optimize_weights / IterativeOptEDriver.ccconformation / Residue.hh
optimize_weights / IterativeOptEDriver.ccscoring / rms_util.hh
optimize_weights / IterativeOptEDriver.ccpack / dunbrack / RotamerLibrary.hh
optimize_weights / IterativeOptEDriver.ccpack / rotamer_set / RotamerSet.hh
optimize_weights / IterativeOptEDriver.ccpack / rotamer_set / RotamerSetFactory.hh
optimize_weights / IterativeOptEDriver.ccscoring / ScoreFunction.hh
optimize_weights / IterativeOptEDriver.ccscoring / ScoreFunctionFactory.hh
optimize_weights / IterativeOptEDriver.ccscoring / ScoreType.hh
optimize_weights / IterativeOptEDriver.ccscoring / ScoreTypeManager.hh
optimize_weights / IterativeOptEDriver.ccscoring / ScoringManager.hh
optimize_weights / IterativeOptEDriver.ccio / silent / SilentFileData.hh
optimize_weights / IterativeOptEDriver.ccpack / dunbrack / SingleResidueDunbrackLibrary.hh
optimize_weights / IterativeOptEDriver.ccpack / task / TaskFactory.hh
optimize_weights / IterativeOptEDriver.ccpack / task / operation / TaskOperationFactory.hh
optimize_weights / IterativeOptEDriver.ccpack / task / operation / TaskOperations.hh
optimize_weights / IterativeOptEDriver.ccscoring / TenANeighborGraph.hh
optimize_weights / IterativeOptEDriver.ccoptimization / types.hh
optimize_weights / IterativeOptEDriver.cctypes.hh
optimize_weights / IterativeOptEDriver.ccscoring / UnfoldedStatePotential.hh
optimize_weights / IterativeOptEDriver.hhchemical / AA.hh
optimize_weights / IterativeOptEDriver.hhscoring / EnergyMap.hh
optimize_weights / IterativeOptEDriver.hhpack / task / PackerTask.fwd.hh
optimize_weights / IterativeOptEDriver.hhpose / Pose.fwd.hh
optimize_weights / IterativeOptEDriver.hhscoring / ScoreFunction.fwd.hh
optimize_weights / IterativeOptEDriver.hhpack / task / TaskFactory.fwd.hh
optimize_weights / IterativeOptEDriver.hhoptimization / types.hh
optimize_weights / IterativeOptEDriver.hhtypes.hh
frag_picker / scores / JCoupling.hhtypes.hh
frag_picker / JCouplingIO.cctypes.hh
frag_picker / JCouplingIO.hhtypes.hh
jd2 / JD2ResourceManagerJobInputter.ccchemical / ChemicalManager.hh
jd2 / JD2ResourceManagerJobInputter.ccpose / Pose.hh
jd2 / JD2ResourceManagerJobInputter.ccchemical / ResidueType.hh
jd2 / JD2ResourceManagerJobInputter.ccchemical / ResidueTypeSet.hh
jd2 / Job.ccpose / Pose.hh
jd2 / Job.hhpose / Pose.fwd.hh
jd2 / Job.hhtypes.hh
features / JobDataFeaturesCreator.hhtypes.hh
jd2 / JobDistributor.ccpose / Pose.hh
jd2 / JobDistributor.ccscoring / ScoreFunction.hh
jd2 / JobDistributor.ccscoring / ScoreFunctionFactory.hh
jd2 / JobDistributor.ccscoring / symmetry / SymmetricScoreFunction.hh
jd2 / JobDistributor.ccpose / symmetry / util.hh
jd2 / JobDistributor.hhpose / Pose.fwd.hh
jd2 / JobDistributor.hhtypes.hh
jobdist / JobDistributors.ccimport_pose / atom_tree_diffs / atom_tree_diff.hh
jobdist / JobDistributors.ccio / raw_data / DecoyFileData.hh
jobdist / JobDistributors.ccscoring / Energies.hh
jobdist / JobDistributors.ccio / pdb / file_data.hh
jobdist / JobDistributors.ccpose / Pose.hh
jobdist / JobDistributors.ccconformation / Residue.hh
jobdist / JobDistributors.ccio / raw_data / ScoreFileData.hh
jobdist / JobDistributors.ccio / silent / SilentFileData.fwd.hh
jobdist / JobDistributors.ccio / silent / SilentFileData.hh
jobdist / JobDistributors.ccio / silent / SilentStructFactory.hh
jobdist / JobDistributors.ccsvn_version.hh
jobdist / JobDistributors.cctypes.hh
jobdist / JobDistributors.ccio / silent / util.hh
jobdist / JobDistributors.hhpose / Pose.fwd.hh
jobdist / JobDistributors.hhio / silent / silent.fwd.hh
jobdist / JobDistributors.hhtypes.hh
jd2 / JobInputter.ccpose / Pose.hh
jd2 / JobInputter.hhpose / Pose.fwd.hh
jd2 / JobInputter.hhtypes.hh
jd2 / JobOutputter.hhpose / Pose.fwd.hh
jd2 / JobOutputter.hhio / silent / SilentStruct.fwd.hh
toolbox / task_operations / JointSequenceOperation.ccchemical / AA.hh
toolbox / task_operations / JointSequenceOperation.ccconformation / Conformation.hh
toolbox / task_operations / JointSequenceOperation.ccimport_pose / import_pose.hh
toolbox / task_operations / JointSequenceOperation.ccpack / task / PackerTask.hh
toolbox / task_operations / JointSequenceOperation.ccpose / PDBInfo.hh
toolbox / task_operations / JointSequenceOperation.ccpose / Pose.hh
toolbox / task_operations / JointSequenceOperation.ccchemical / ResidueType.hh
toolbox / task_operations / JointSequenceOperation.ccsequence / Sequence.hh
toolbox / task_operations / JointSequenceOperation.ccconformation / symmetry / SymmetryInfo.hh
toolbox / task_operations / JointSequenceOperation.ccpack / rotamer_set / UnboundRotamersOperation.hh
toolbox / task_operations / JointSequenceOperation.ccpose / symmetry / util.hh
toolbox / task_operations / JointSequenceOperation.ccsequence / util.hh
toolbox / task_operations / JointSequenceOperation.hhpack / task / PackerTask.fwd.hh
toolbox / task_operations / JointSequenceOperation.hhsequence / Sequence.fwd.hh
toolbox / task_operations / JointSequenceOperation.hhpack / task / operation / TaskOperation.hh
toolbox / task_operations / JointSequenceOperation.hhtypes.hh
toolbox / task_operations / JointSequenceOperation.hhpack / rotamer_set / UnboundRotamersOperation.fwd.hh
toolbox / task_operations / JointSequenceOperationCreator.hhpack / task / operation / TaskOperationCreator.hh
simple_filters / JScoreEvaluator.ccpose / Pose.hh
simple_filters / JScoreEvaluator.ccscoring / ScoreFunction.hh
simple_filters / JScoreEvaluator.ccscoring / ScoreFunctionFactory.hh
simple_filters / JScoreEvaluator.ccutil / SwitchResidueTypeSet.hh
simple_filters / JScoreEvaluator.cctypes.hh
simple_filters / JScoreEvaluator.hhpose / Pose.fwd.hh
simple_filters / JScoreEvaluator.hhchemical / ResidueTypeSet.fwd.hh
simple_filters / JScoreEvaluator.hhscoring / ScoreFunction.fwd.hh
simple_filters / JScoreEvaluator.hhio / silent / SilentStruct.fwd.hh
simple_filters / JScoreEvaluator.hhtypes.hh
simple_filters / JScoreEvaluatorCreator.ccio / silent / silent.fwd.hh
simple_filters / JScoreEvaluatorCreator.ccio / silent / SilentStruct.hh
simple_filters / JScoreEvaluatorCreator.hhtypes.hh
topology_broker / JumpClaimer.ccfragment / FragSet.hh
topology_broker / JumpClaimer.ccfragment / Frame.hh
topology_broker / JumpClaimer.ccfragment / FrameList.hh
topology_broker / JumpClaimer.cckinematics / MoveMap.hh
topology_broker / JumpClaimer.ccfragment / OrderedFragSet.hh
topology_broker / JumpClaimer.ccpose / Pose.hh
topology_broker / JumpClaimer.hhpose / Pose.hh
simple_filters / JumpEvaluator.cckinematics / tree / Atom.hh
simple_filters / JumpEvaluator.cckinematics / AtomTree.hh
simple_filters / JumpEvaluator.ccconformation / Conformation.hh
simple_filters / JumpEvaluator.cckinematics / FoldTree.hh
simple_filters / JumpEvaluator.ccpose / Pose.hh
simple_filters / JumpEvaluator.ccio / silent / SilentStruct.hh
simple_filters / JumpEvaluator.hhid / AtomID.hh
simple_filters / JumpEvaluator.hhpose / Pose.fwd.hh
simple_filters / JumpEvaluator.hhio / silent / silent.fwd.hh
simple_filters / JumpEvaluator.hhkinematics / Stub.hh
abinitio / JumpingFoldConstraints.hhkinematics / FoldTree.fwd.hh
abinitio / JumpingFoldConstraints.hhfragment / FragSet.fwd.hh
abinitio / JumpingFoldConstraints.hhfragment / FragSet.hh
abinitio / JumpingFoldConstraints.hhkinematics / MoveMap.fwd.hh
abinitio / JumpingFoldConstraints.hhpose / Pose.hh
abinitio / JumpingFoldConstraints.hhkinematics / ShortestPathInFoldTree.fwd.hh
abinitio / JumpingFoldConstraints.hhtypes.hh
simple_filters / JumpNrEvaluatorCreator.ccio / silent / silent.fwd.hh
simple_filters / JumpNrEvaluatorCreator.ccio / silent / SilentStruct.hh
simple_filters / JumpNrEvaluatorCreator.hhtypes.hh
moves / JumpOutMover.ccscoring / Energies.hh
moves / JumpOutMover.ccpose / Pose.hh
moves / JumpOutMover.ccscoring / ScoreFunction.fwd.hh
moves / JumpOutMover.ccscoring / ScoreFunction.hh
moves / JumpOutMover.hhpose / Pose.fwd.hh
moves / JumpOutMover.hhscoring / ScoreFunction.fwd.hh
moves / JumpOutMover.hhtypes.hh
simple_moves / sidechain_moves / JumpRotamerSidechainMover.ccconformation / Conformation.hh
simple_moves / sidechain_moves / JumpRotamerSidechainMover.ccid / DOF_ID_Range.hh
simple_moves / sidechain_moves / JumpRotamerSidechainMover.ccpack / dunbrack / DunbrackRotamer.hh
simple_moves / sidechain_moves / JumpRotamerSidechainMover.ccpack / task / PackerTask.hh
simple_moves / sidechain_moves / JumpRotamerSidechainMover.ccpose / Pose.hh
simple_moves / sidechain_moves / JumpRotamerSidechainMover.ccconformation / Residue.hh
simple_moves / sidechain_moves / JumpRotamerSidechainMover.ccconformation / ResidueFactory.hh
simple_moves / sidechain_moves / JumpRotamerSidechainMover.ccchemical / ResidueType.hh
simple_moves / sidechain_moves / JumpRotamerSidechainMover.ccpack / dunbrack / RotamerLibraryScratchSpace.hh
simple_moves / sidechain_moves / JumpRotamerSidechainMover.ccscoring / ScoringManager.hh
simple_moves / sidechain_moves / JumpRotamerSidechainMover.ccpack / dunbrack / SingleResidueDunbrackLibrary.hh
simple_moves / sidechain_moves / JumpRotamerSidechainMover.ccpack / task / TaskFactory.hh
simple_moves / sidechain_moves / JumpRotamerSidechainMover.ccpack / task / operation / TaskOperations.hh
simple_moves / sidechain_moves / JumpRotamerSidechainMover.ccid / TorsionID.hh
simple_moves / sidechain_moves / JumpRotamerSidechainMover.cctypes.hh
simple_moves / sidechain_moves / JumpRotamerSidechainMover.hhid / DOF_ID_Range.fwd.hh
simple_moves / sidechain_moves / JumpRotamerSidechainMover.hhpack / dunbrack / DunbrackRotamer.fwd.hh
simple_moves / sidechain_moves / JumpRotamerSidechainMover.hhpack / dunbrack / DunbrackRotamer.hh
simple_moves / sidechain_moves / JumpRotamerSidechainMover.hhpack / task / PackerTask.fwd.hh
simple_moves / sidechain_moves / JumpRotamerSidechainMover.hhpose / Pose.fwd.hh
simple_moves / sidechain_moves / JumpRotamerSidechainMover.hhchemical / ResidueType.fwd.hh
simple_moves / sidechain_moves / JumpRotamerSidechainMover.hhpack / dunbrack / RotamerLibrary.fwd.hh
simple_moves / sidechain_moves / JumpRotamerSidechainMover.hhpack / task / TaskFactory.fwd.hh
jumping / JumpSample.ccscoring / constraints / AtomPairConstraint.hh
jumping / JumpSample.ccfragment / BBTorsionSRFD.hh
jumping / JumpSample.cckinematics / FoldTree.hh
jumping / JumpSample.ccfragment / Frame.hh
jumping / JumpSample.ccfragment / FrameIterator.hh
jumping / JumpSample.ccfragment / FrameIteratorWorker_.hh
jumping / JumpSample.ccfragment / FrameList.hh
jumping / JumpSample.ccscoring / constraints / Func.hh
jumping / JumpSample.cckinematics / Jump.hh
jumping / JumpSample.ccfragment / JumpingFrame.hh
jumping / JumpSample.ccfragment / JumpSRFD.hh
jumping / JumpSample.cckinematics / MoveMap.hh
jumping / JumpSample.ccscoring / dssp / PairingsList.hh
jumping / JumpSample.ccpose / Pose.hh
jumping / JumpSample.ccfragment / SecondaryStructure.hh
jumping / JumpSample.cckinematics / ShortestPathInFoldTree.hh
jumping / JumpSample.ccpose / util.hh
jumping / JumpSample.ccchemical / VariantType.hh
jumping / JumpSample.hhkinematics / FoldTree.hh
jumping / JumpSample.hhfragment / FrameIterator.fwd.hh
jumping / JumpSample.hhfragment / FrameList.fwd.hh
jumping / JumpSample.hhscoring / dssp / PairingsList.hh
jumping / JumpSample.hhpose / Pose.fwd.hh
jumping / JumpSample.hhfragment / SecondaryStructure.fwd.hh
jumping / JumpSample.hhkinematics / ShortestPathInFoldTree.fwd.hh
jumping / JumpSample.hhtypes.hh
jumping / JumpSetup.cckinematics / FoldTree.hh
jumping / JumpSetup.ccfragment / Frame.hh
jumping / JumpSetup.ccfragment / FrameList.hh
jumping / JumpSetup.ccfragment / OrderedFragSet.hh
jumping / JumpSetup.ccpose / Pose.hh
jumping / JumpSetup.hhfragment / FragSet.fwd.hh
jumping / JumpSetup.hhfragment / FrameList.fwd.hh
jumping / JumpSetup.hhkinematics / MoveMap.fwd.hh
jumping / JumpSetup.hhpose / Pose.fwd.hh
jumping / JumpSetup.hhkinematics / ShortestPathInFoldTree.fwd.hh
jumping / JumpSetup.hhtypes.hh
toolbox / KCluster.ccio / silent / SilentFileData.hh
toolbox / KCluster.hhtypes.hh
abinitio / KinematicAbinitio.ccscoring / constraints / Constraint.fwd.hh
abinitio / KinematicAbinitio.ccscoring / constraints / ConstraintSet.hh
abinitio / KinematicAbinitio.ccfragment / FragmentIO.hh
abinitio / KinematicAbinitio.ccfragment / FragSet.hh
abinitio / KinematicAbinitio.ccfragment / Frame.hh
abinitio / KinematicAbinitio.ccfragment / FrameList.hh
abinitio / KinematicAbinitio.cckinematics / MoveMap.hh
abinitio / KinematicAbinitio.ccfragment / OrderedFragSet.hh
abinitio / KinematicAbinitio.ccpose / Pose.hh
abinitio / KinematicAbinitio.ccio / silent / ProteinSilentStruct.hh
abinitio / KinematicAbinitio.ccio / silent / ProteinSilentStruct.tmpl.hh
abinitio / KinematicAbinitio.ccscoring / ScoreFunction.hh
abinitio / KinematicAbinitio.ccio / silent / SilentFileData.hh
abinitio / KinematicAbinitio.ccscoring / constraints / SkipViolFunc.hh
abinitio / KinematicAbinitio.cctypes.hh
abinitio / KinematicAbinitio.hhscoring / constraints / ConstraintSet.hh
abinitio / KinematicAbinitio.hhkinematics / FoldTree.fwd.hh
abinitio / KinematicAbinitio.hhfragment / FragSet.fwd.hh
abinitio / KinematicAbinitio.hhkinematics / MoveMap.fwd.hh
abinitio / KinematicAbinitio.hhpose / Pose.fwd.hh
abinitio / KinematicAbinitio.hhkinematics / ShortestPathInFoldTree.fwd.hh
abinitio / KinematicAbinitio.hhtypes.hh
abinitio / KinematicControl.ccchemical / AtomType.hh
abinitio / KinematicControl.cckinematics / MoveMap.hh
abinitio / KinematicControl.ccpose / Pose.hh
abinitio / KinematicControl.ccscoring / ScoreFunction.hh
abinitio / KinematicControl.cckinematics / ShortestPathInFoldTree.hh
abinitio / KinematicControl.ccpose / util.hh
abinitio / KinematicControl.ccchemical / VariantType.hh
abinitio / KinematicControl.hhkinematics / FoldTree.hh
abinitio / KinematicControl.hhkinematics / MoveMap.fwd.hh
abinitio / KinematicControl.hhpose / Pose.fwd.hh
abinitio / KinematicControl.hhscoring / ScoreFunction.fwd.hh
abinitio / KinematicControl.hhkinematics / ShortestPathInFoldTree.fwd.hh
abinitio / KinematicControl.hhtypes.hh
loops / loop_closure / kinematic_closure / KinematicMover.ccchemical / AtomType.hh
loops / loop_closure / kinematic_closure / KinematicMover.ccconformation / Conformation.hh
loops / loop_closure / kinematic_closure / KinematicMover.ccid / DOF_ID.hh
loops / loop_closure / kinematic_closure / KinematicMover.ccpose / Pose.hh
loops / loop_closure / kinematic_closure / KinematicMover.ccscoring / Ramachandran.hh
loops / loop_closure / kinematic_closure / KinematicMover.ccconformation / Residue.hh
loops / loop_closure / kinematic_closure / KinematicMover.ccconformation / ResidueFactory.hh
loops / loop_closure / kinematic_closure / KinematicMover.ccscoring / ScoreFunction.hh
loops / loop_closure / kinematic_closure / KinematicMover.ccscoring / ScoringManager.hh
loops / loop_closure / kinematic_closure / KinematicMover.ccid / TorsionID.hh
loops / loop_closure / kinematic_closure / KinematicMover.ccconformation / util.hh
loops / loop_closure / kinematic_closure / KinematicMover.hhchemical / AA.hh
loops / loop_closure / kinematic_closure / KinematicMover.hhscoring / ScoreFunction.fwd.hh
loops / loop_closure / kinematic_closure / KinematicPerturber.ccchemical / AA.hh
loops / loop_closure / kinematic_closure / KinematicPerturber.cckinematics / AtomTree.hh
loops / loop_closure / kinematic_closure / KinematicPerturber.cckinematics / MoveMap.hh
loops / loop_closure / kinematic_closure / KinematicPerturber.ccpose / Pose.hh
loops / loop_closure / kinematic_closure / KinematicPerturber.ccscoring / Ramachandran.hh
loops / loop_closure / kinematic_closure / KinematicPerturber.ccscoring / Ramachandran2B.hh
loops / loop_closure / kinematic_closure / KinematicPerturber.ccscoring / ScoringManager.hh
loops / loop_closure / kinematic_closure / KinematicPerturber.hhchemical / AA.hh
loops / loop_closure / kinematic_closure / KinematicPerturber.hhkinematics / MoveMap.fwd.hh
loops / loop_closure / kinematic_closure / KinematicPerturber.hhpose / Pose.fwd.hh
loops / loop_closure / kinematic_closure / KinematicPerturber.hhscoring / Ramachandran.fwd.hh
loops / loop_closure / kinematic_closure / KinematicPerturber.hhscoring / Ramachandran2B.fwd.hh
loops / loop_closure / kinematic_closure / KinematicPerturber.hhtypes.hh
abinitio / KinematicTaskControl.ccpose / Pose.hh
abinitio / KinematicTaskControl.ccconformation / util.hh
abinitio / KinematicTaskControl.cckinematics / util.hh
abinitio / KinematicTaskControl.hhpose / Pose.fwd.hh
abinitio / KinematicTaskControl.hhtypes.hh
loops / loop_closure / kinematic_closure / KinematicWrapper.cckinematics / MoveMap.hh
loops / loop_closure / kinematic_closure / KinematicWrapper.cctypes.hh
loops / loop_closure / kinematic_closure / KinematicWrapper.hhkinematics / MoveMap.fwd.hh
loops / loop_closure / kinematic_closure / KinematicWrapper.hhpose / Pose.fwd.hh
loops / loop_closure / kinematic_closure / KinematicWrapper.hhtypes.hh
frag_picker / LAMBEGO_IO.cctypes.hh
frag_picker / LAMBEGO_IO.hhtypes.hh
frag_picker / scores / LAMBEGO_Similarity.cctypes.hh
frag_picker / scores / LAMBEGO_Similarity.hhtypes.hh
topology_broker / weights / LargeFragWeight.hhtypes.hh
flxbb / LayerDesignOperation.ccscoring / dssp / Dssp.hh
flxbb / LayerDesignOperation.ccpack / task / PackerTask.hh
flxbb / LayerDesignOperation.ccpack / task / PackerTask_.hh
flxbb / LayerDesignOperation.ccpose / Pose.hh
flxbb / LayerDesignOperation.ccconformation / Residue.hh
flxbb / LayerDesignOperation.ccpack / task / operation / TaskOperationFactory.hh
flxbb / LayerDesignOperation.ccpose / symmetry / util.hh
flxbb / LayerDesignOperation.hhpack / task / PackerTask.fwd.hh
flxbb / LayerDesignOperation.hhpack / task / operation / TaskOperation.hh
flxbb / LayerDesignOperation.hhtypes.hh
flxbb / LayerDesignOperationCreator.hhpack / task / operation / TaskOperationCreator.hh
toolbox / task_operations / LayerOperations.ccconformation / Conformation.hh
toolbox / task_operations / LayerOperations.ccscoring / dssp / Dssp.hh
toolbox / task_operations / LayerOperations.ccpack / task / operation / OperateOnCertainResidues.hh
toolbox / task_operations / LayerOperations.ccpack / task / PackerTask.hh
toolbox / task_operations / LayerOperations.ccpose / Pose.hh
toolbox / task_operations / LayerOperations.ccpack / task / operation / ResLvlTaskOperations.hh
toolbox / task_operations / LayerOperations.hhchemical / AA.hh
toolbox / task_operations / LayerOperations.hhid / AtomID_Map.hh
toolbox / task_operations / LayerOperations.hhchemical / AtomType.hh
toolbox / task_operations / LayerOperations.hhpack / task / PackerTask.fwd.hh
toolbox / task_operations / LayerOperations.hhpose / Pose.fwd.hh
toolbox / task_operations / LayerOperations.hhscoring / sasa.hh
toolbox / task_operations / LayerOperations.hhpack / task / operation / TaskOperation.hh
toolbox / task_operations / LayerOperations.hhtypes.hh
toolbox / task_operations / LayerOperationsCreator.hhpack / task / operation / TaskOperationCreator.hh
jd2 / LazySilentFileJobInputter.ccpose / Pose.hh
jd2 / LazySilentFileJobInputter.ccpose / util.hh
jd2 / LazySilentFileJobInputter.hhpose / Pose.fwd.hh
jd2 / LazySilentFileJobInputter.hhio / silent / SilentFileData.hh
jd2 / LazySilentFileJobInputter.hhio / silent / SilentStruct.fwd.hh
frag_picker / LazySortedVector1.hhtypes.hh
antibody2 / LHRepulsiveRamp.cckinematics / MoveMap.hh
antibody2 / LHRepulsiveRamp.ccpose / PDBInfo.hh
antibody2 / LHRepulsiveRamp.ccpose / Pose.hh
antibody2 / LHRepulsiveRamp.ccscoring / ScoreFunction.hh
antibody2 / LHRepulsiveRamp.ccscoring / ScoreFunctionFactory.hh
antibody2 / LHRepulsiveRamp.ccpack / task / TaskFactory.hh
antibody2 / LHRepulsiveRamp.ccpose / util.hh
antibody2 / LHRepulsiveRamp.hhscoring / ScoreFunction.hh
antibody2 / LHRepulsiveRamp.hhpack / task / TaskFactory.hh
antibody2 / LHRepulsiveRampLegacy.ccpose / datacache / CacheableDataType.hh
antibody2 / LHRepulsiveRampLegacy.ccimport_pose / import_pose.hh
antibody2 / LHRepulsiveRampLegacy.ccpack / task / operation / NoRepackDisulfides.hh
antibody2 / LHRepulsiveRampLegacy.ccpack / task / operation / OperateOnCertainResidues.hh
antibody2 / LHRepulsiveRampLegacy.ccpack / task / operation / OptH.hh
antibody2 / LHRepulsiveRampLegacy.ccpack / task / PackerTask.hh
antibody2 / LHRepulsiveRampLegacy.ccpose / PDBInfo.hh
antibody2 / LHRepulsiveRampLegacy.ccpose / Pose.hh
antibody2 / LHRepulsiveRampLegacy.ccpack / task / operation / ResFilters.hh
antibody2 / LHRepulsiveRampLegacy.ccpack / task / operation / ResLvlTaskOperations.hh
antibody2 / LHRepulsiveRampLegacy.ccpack / dunbrack / RotamerConstraint.hh
antibody2 / LHRepulsiveRampLegacy.ccscoring / ScoreFunction.hh
antibody2 / LHRepulsiveRampLegacy.ccscoring / ScoreFunctionFactory.hh
antibody2 / LHRepulsiveRampLegacy.ccpack / task / TaskFactory.hh
antibody2 / LHRepulsiveRampLegacy.ccpack / task / operation / TaskOperations.hh
antibody2 / LHRepulsiveRampLegacy.ccpack / rotamer_set / UnboundRotamersOperation.hh
antibody2 / LHRepulsiveRampLegacy.ccpose / util.hh
antibody2 / LHRepulsiveRampLegacy.ccchemical / VariantType.hh
antibody2 / LHRepulsiveRampLegacy.hhpose / Pose.hh
antibody2 / LHRepulsiveRampLegacy.hhscoring / ScoreFunction.hh
antibody2 / LHRepulsiveRampLegacy.hhpack / task / TaskFactory.hh
antibody2 / LHSnugFitLegacy.ccpose / datacache / CacheableDataType.hh
antibody2 / LHSnugFitLegacy.ccimport_pose / import_pose.hh
antibody2 / LHSnugFitLegacy.ccpack / task / operation / NoRepackDisulfides.hh
antibody2 / LHSnugFitLegacy.ccpack / task / operation / OperateOnCertainResidues.hh
antibody2 / LHSnugFitLegacy.ccpack / task / operation / OptH.hh
antibody2 / LHSnugFitLegacy.ccpack / task / PackerTask.hh
antibody2 / LHSnugFitLegacy.ccpose / PDBInfo.hh
antibody2 / LHSnugFitLegacy.ccpose / Pose.hh
antibody2 / LHSnugFitLegacy.ccpack / task / operation / ResFilters.hh
antibody2 / LHSnugFitLegacy.ccpack / task / operation / ResLvlTaskOperations.hh
antibody2 / LHSnugFitLegacy.ccpack / dunbrack / RotamerConstraint.hh
antibody2 / LHSnugFitLegacy.ccscoring / ScoreFunction.hh
antibody2 / LHSnugFitLegacy.ccscoring / ScoreFunctionFactory.hh
antibody2 / LHSnugFitLegacy.ccpack / task / TaskFactory.hh
antibody2 / LHSnugFitLegacy.ccpack / task / operation / TaskOperations.hh
antibody2 / LHSnugFitLegacy.ccpack / rotamer_set / UnboundRotamersOperation.hh
antibody2 / LHSnugFitLegacy.ccpose / util.hh
antibody2 / LHSnugFitLegacy.ccchemical / VariantType.hh
antibody2 / LHSnugFitLegacy.hhpose / Pose.hh
antibody2 / LHSnugFitLegacy.hhpack / task / TaskFactory.hh
ligand_docking / ligand_dock_impl.ccchemical / ChemicalManager.hh
ligand_docking / ligand_dock_impl.ccimport_pose / import_pose.hh
ligand_docking / ligand_dock_impl.ccpose / Pose.hh
ligand_docking / ligand_dock_impl.ccscoring / ScoreFunction.hh
ligand_docking / ligand_dock_impl.cctypes.hh
ligand_docking / ligand_functions.ccscoring / constraints / AmbiguousConstraint.hh
ligand_docking / ligand_functions.ccid / AtomID.hh
ligand_docking / ligand_functions.ccscoring / constraints / CircularHarmonicFunc.hh
ligand_docking / ligand_functions.ccscoring / constraints / Constraint.hh
ligand_docking / ligand_functions.ccscoring / constraints / ConstraintSet.hh
ligand_docking / ligand_functions.ccscoring / constraints / DihedralConstraint.hh
ligand_docking / ligand_functions.ccpose / Pose.hh
ligand_docking / ligand_functions.ccconformation / Residue.hh
ligand_docking / ligand_functions.hhscoring / constraints / Constraint.fwd.hh
ligand_docking / ligand_functions.hhpose / Pose.fwd.hh
ligand_docking / ligand_functions.hhconformation / Residue.fwd.hh
ligand_docking / ligand_functions.hhchemical / ResidueType.fwd.hh
ligand_docking / ligand_scores.ccconformation / Conformation.hh
ligand_docking / ligand_scores.ccscoring / Energies.hh
ligand_docking / ligand_scores.cckinematics / FoldTree.hh
ligand_docking / ligand_scores.cckinematics / MoveMap.fwd.hh
ligand_docking / ligand_scores.ccpose / PDBInfo.hh
ligand_docking / ligand_scores.ccconformation / Residue.hh
ligand_docking / ligand_scores.ccscoring / rms_util.hh
ligand_docking / ligand_scores.ccscoring / rms_util.tmpl.hh
ligand_docking / ligand_scores.ccscoring / ScoreFunction.hh
ligand_docking / ligand_scores.ccscoring / ScoreType.hh
ligand_docking / ligand_scores.cctypes.hh
ligand_docking / ligand_scores.ccpose / util.hh
ligand_docking / ligand_scores.hhpose / Pose.fwd.hh
ligand_docking / ligand_scores.hhscoring / ScoreFunction.fwd.hh
ligand_docking / ligand_scores.hhtypes.hh
ligand_docking / LigandArea.cctypes.hh
ligand_docking / LigandArea.hhtypes.hh
ligand_docking / LigandBaseProtocol.cckinematics / tree / Atom.hh
ligand_docking / LigandBaseProtocol.ccid / AtomID.hh
ligand_docking / LigandBaseProtocol.cckinematics / AtomTree.hh
ligand_docking / LigandBaseProtocol.ccchemical / AtomType.hh
ligand_docking / LigandBaseProtocol.ccchemical / automorphism.hh
ligand_docking / LigandBaseProtocol.ccscoring / constraints / CoordinateConstraint.hh
ligand_docking / LigandBaseProtocol.ccscoring / Energies.hh
ligand_docking / LigandBaseProtocol.ccscoring / EnergyGraph.hh
ligand_docking / LigandBaseProtocol.ccscoring / methods / EnergyMethodOptions.hh
ligand_docking / LigandBaseProtocol.cckinematics / FoldTree.hh
ligand_docking / LigandBaseProtocol.ccgraph / Graph.hh
ligand_docking / LigandBaseProtocol.ccscoring / constraints / HarmonicFunc.hh
ligand_docking / LigandBaseProtocol.cckinematics / MoveMap.hh
ligand_docking / LigandBaseProtocol.ccpack / task / PackerTask.hh
ligand_docking / LigandBaseProtocol.ccpose / Pose.hh
ligand_docking / LigandBaseProtocol.ccconformation / Residue.hh
ligand_docking / LigandBaseProtocol.ccchemical / ResidueType.hh
ligand_docking / LigandBaseProtocol.ccchemical / ResidueTypeSet.hh
ligand_docking / LigandBaseProtocol.ccpack / dunbrack / RotamerLibrary.hh
ligand_docking / LigandBaseProtocol.ccscoring / ScoreFunction.hh
ligand_docking / LigandBaseProtocol.ccscoring / ScoreFunctionFactory.hh
ligand_docking / LigandBaseProtocol.ccpack / task / TaskFactory.hh
ligand_docking / LigandBaseProtocol.ccpack / rotamer_set / UnboundRotamersOperation.hh
ligand_docking / LigandBaseProtocol.ccpose / util.hh
ligand_docking / LigandBaseProtocol.ccchemical / VariantType.hh
ligand_docking / LigandBaseProtocol.hhimport_pose / atom_tree_diffs / atom_tree_diff.hh
ligand_docking / LigandBaseProtocol.hhscoring / constraints / Constraint.fwd.hh
ligand_docking / LigandBaseProtocol.hhscoring / constraints / Func.fwd.hh
ligand_docking / LigandBaseProtocol.hhkinematics / MoveMap.fwd.hh
ligand_docking / LigandBaseProtocol.hhpack / task / PackerTask.fwd.hh
ligand_docking / LigandBaseProtocol.hhconformation / Residue.fwd.hh
ligand_docking / LigandBaseProtocol.hhscoring / ScoreFunction.fwd.hh
ligand_docking / LigandBaseProtocol.hhtypes.hh
ligand_docking / LigandBaseProtocol.hhpack / rotamer_set / UnboundRotamersOperation.fwd.hh
toolbox / match_enzdes_util / LigandConformer.ccid / AtomID.hh
toolbox / match_enzdes_util / LigandConformer.ccchemical / AtomType.hh
toolbox / match_enzdes_util / LigandConformer.ccconformation / Residue.hh
toolbox / match_enzdes_util / LigandConformer.ccchemical / ResidueConnection.hh
toolbox / match_enzdes_util / LigandConformer.hhid / AtomID.fwd.hh
toolbox / match_enzdes_util / LigandConformer.hhconformation / Residue.fwd.hh
toolbox / match_enzdes_util / LigandConformer.hhchemical / ResidueType.fwd.hh
toolbox / match_enzdes_util / LigandConformer.hhtypes.hh
match / downstream / LigandConformerBuilder.ccid / AtomID.hh
match / downstream / LigandConformerBuilder.ccchemical / AtomType.hh
match / downstream / LigandConformerBuilder.ccscoring / etable / count_pair / CountPairFunction.hh
match / downstream / LigandConformerBuilder.ccpose / PDBInfo.hh
match / downstream / LigandConformerBuilder.ccpose / Pose.hh
match / downstream / LigandConformerBuilder.ccconformation / Residue.hh
match / downstream / LigandConformerBuilder.ccpack / dunbrack / SingleLigandRotamerLibrary.hh
match / downstream / LigandConformerBuilder.hhscoring / etable / count_pair / CountPairFunction.fwd.hh
match / downstream / LigandConformerBuilder.hhconformation / Residue.fwd.hh
match / downstream / LigandConformerBuilder.hhchemical / ResidueType.fwd.hh
match / downstream / LigandConformerBuilder.hhtypes.hh
ligand_docking / LigandDesign.ccchemical / ChemicalManager.hh
ligand_docking / LigandDesign.ccconformation / Conformation.hh
ligand_docking / LigandDesign.ccpose / Pose.hh
ligand_docking / LigandDesign.ccconformation / Residue.hh
ligand_docking / LigandDesign.ccchemical / ResidueSelector.hh
ligand_docking / LigandDesign.cctypes.hh
ligand_docking / LigandDesign.ccpose / util.hh
ligand_docking / LigandDesign.hhpose / Pose.fwd.hh
ligand_docking / LigandDesign.hhconformation / Residue.fwd.hh
ligand_docking / LigandDockProtocol.ccgrid / CartGrid.hh
ligand_docking / LigandDockProtocol.ccconformation / Conformation.hh
ligand_docking / LigandDockProtocol.cckinematics / Edge.hh
ligand_docking / LigandDockProtocol.ccscoring / Energies.hh
ligand_docking / LigandDockProtocol.cckinematics / FoldTree.hh
ligand_docking / LigandDockProtocol.ccgraph / Graph.hh
ligand_docking / LigandDockProtocol.ccoptimization / MinimizerOptions.hh
ligand_docking / LigandDockProtocol.cckinematics / MoveMap.hh
ligand_docking / LigandDockProtocol.ccpack / task / PackerTask.hh
ligand_docking / LigandDockProtocol.ccpose / Pose.hh
ligand_docking / LigandDockProtocol.ccconformation / Residue.hh
ligand_docking / LigandDockProtocol.ccscoring / rms_util.hh
ligand_docking / LigandDockProtocol.ccpack / dunbrack / RotamerConstraint.hh
ligand_docking / LigandDockProtocol.ccscoring / sasa.hh
ligand_docking / LigandDockProtocol.ccscoring / ScoreFunction.hh
ligand_docking / LigandDockProtocol.cctypes.hh
ligand_docking / LigandDockProtocol.hhkinematics / MoveMap.fwd.hh
ligand_docking / LigandDockProtocol.hhpose / Pose.fwd.hh
ligand_docking / LigandDockProtocol.hhscoring / ScoreFunction.fwd.hh
motifs / LigandMotifSearch.ccchemical / AtomType.hh
motifs / LigandMotifSearch.ccchemical / AtomTypeSet.hh
motifs / LigandMotifSearch.ccchemical / ChemicalManager.hh
motifs / LigandMotifSearch.ccscoring / constraints / ConstraintSet.hh
motifs / LigandMotifSearch.ccscoring / Energies.hh
motifs / LigandMotifSearch.ccscoring / methods / EnergyMethodOptions.hh
motifs / LigandMotifSearch.cckinematics / MoveMap.hh
motifs / LigandMotifSearch.ccpack / task / PackerTask.hh
motifs / LigandMotifSearch.ccpose / PDBInfo.hh
motifs / LigandMotifSearch.ccpose / Pose.hh
motifs / LigandMotifSearch.ccio / pdb / pose_io.hh
motifs / LigandMotifSearch.ccconformation / Residue.hh
motifs / LigandMotifSearch.ccconformation / ResidueFactory.hh
motifs / LigandMotifSearch.ccchemical / ResidueType.hh
motifs / LigandMotifSearch.ccchemical / ResidueTypeSet.hh
motifs / LigandMotifSearch.ccpack / rotamer_set / RotamerSet.hh
motifs / LigandMotifSearch.ccpack / rotamer_set / RotamerSetFactory.hh
motifs / LigandMotifSearch.ccscoring / ScoreFunction.hh
motifs / LigandMotifSearch.ccscoring / ScoreFunctionFactory.hh
motifs / LigandMotifSearch.ccscoring / ScoreType.hh
motifs / LigandMotifSearch.ccpose / util.hh
motifs / LigandMotifSearch.ccchemical / VariantType.hh
motifs / LigandMotifSearch.hhpack / task / PackerTask.fwd.hh
motifs / LigandMotifSearch.hhpose / Pose.fwd.hh
motifs / LigandMotifSearch.hhconformation / Residue.fwd.hh
motifs / LigandMotifSearch.hhpack / rotamer_set / RotamerSet.fwd.hh
motifs / LigandMotifSearch.hhtypes.hh
toolbox / task_operations / LimitAromaChi2Operation.ccchemical / AA.hh
toolbox / task_operations / LimitAromaChi2Operation.ccpack / task / PackerTask.hh
toolbox / task_operations / LimitAromaChi2Operation.ccconformation / Residue.hh
toolbox / task_operations / LimitAromaChi2Operation.ccpack / rotamer_set / RotamerSet.hh
toolbox / task_operations / LimitAromaChi2Operation.ccpack / rotamer_set / RotamerSetOperation.hh
toolbox / task_operations / LimitAromaChi2Operation.ccpack / task / operation / TaskOperation.hh
toolbox / task_operations / LimitAromaChi2Operation.hhpack / dunbrack / ChiSet.fwd.hh
toolbox / task_operations / LimitAromaChi2Operation.hhgraph / Graph.fwd.hh
toolbox / task_operations / LimitAromaChi2Operation.hhpack / task / PackerTask.fwd.hh
toolbox / task_operations / LimitAromaChi2Operation.hhpose / Pose.fwd.hh
toolbox / task_operations / LimitAromaChi2Operation.hhpack / rotamer_set / RotamerSet.fwd.hh
toolbox / task_operations / LimitAromaChi2Operation.hhpack / rotamer_set / RotamerSetOperation.hh
toolbox / task_operations / LimitAromaChi2Operation.hhscoring / ScoreFunction.fwd.hh
toolbox / task_operations / LimitAromaChi2Operation.hhpack / task / operation / TaskOperation.hh
toolbox / task_operations / LimitAromaChi2OperationCreator.hhpack / task / operation / TaskOperationCreator.hh
simple_moves / LoadPDBMover.ccimport_pose / import_pose.hh
simple_moves / LoadPDBMover.ccpose / Pose.hh
simple_moves / LoadPDBMover.ccpose / util.hh
simple_moves / LoadPDBMover.hhpose / Pose.fwd.hh
simple_moves / LoadUnboundRotMover.ccpose / Pose.hh
simple_moves / LoadUnboundRotMover.ccpack / dunbrack / RotamerConstraint.hh
simple_moves / LoadUnboundRotMover.hhpose / Pose.fwd.hh
loophash / LocalInserter.ccoptimization / AtomTreeMinimizer.hh
loophash / LocalInserter.ccoptimization / MinimizerOptions.hh
loophash / LocalInserter.cckinematics / MoveMap.hh
loophash / LocalInserter.ccpose / Pose.hh
loophash / LocalInserter.ccscoring / rms_util.hh
loophash / LocalInserter.ccconformation / util.hh
loophash / LocalInserter.ccpose / util.hh
loophash / LocalInserter.hhoptimization / MinimizerOptions.hh
loophash / LocalInserter.hhpose / Pose.fwd.hh
loophash / LocalInserter.hhscoring / ScoreFunction.hh
loophash / LocalInserter.hhtypes.hh
loops / Loop.cckinematics / MoveMap.hh
loops / Loop.ccpose / Pose.hh
loops / Loop.ccconformation / Residue.hh
loops / Loop.fwd.hhtypes.hh
loops / Loop.hhkinematics / MoveMap.fwd.hh
loops / Loop.hhpose / Pose.fwd.hh
loops / Loop.hhid / types.hh
loops / Loop.hhtypes.hh
analysis / LoopAnalyzerMover.ccchemical / AtomType.hh
analysis / LoopAnalyzerMover.ccscoring / Energies.hh
analysis / LoopAnalyzerMover.ccscoring / EnergyMap.hh
analysis / LoopAnalyzerMover.cckinematics / FoldTree.hh
analysis / LoopAnalyzerMover.ccpose / Pose.hh
analysis / LoopAnalyzerMover.ccscoring / ScoreFunction.hh
analysis / LoopAnalyzerMover.cctypes.hh
analysis / LoopAnalyzerMover.ccpose / util.hh
analysis / LoopAnalyzerMover.ccchemical / VariantType.hh
analysis / LoopAnalyzerMover.hhpose / Pose.fwd.hh
analysis / LoopAnalyzerMover.hhscoring / ScoreFunction.fwd.hh
analysis / LoopAnalyzerMover.hhtypes.hh
features / LoopAnchorFeatures.ccconformation / Conformation.hh
features / LoopAnchorFeatures.ccpose / Pose.hh
features / LoopAnchorFeaturesCreator.hhtypes.hh
loop_build / LoopBuild.ccchemical / ChemicalManager.hh
loop_build / LoopBuild.ccfragment / FragSet.hh
loop_build / LoopBuild.ccimport_pose / import_pose.hh
loop_build / LoopBuild.cckinematics / Jump.hh
loop_build / LoopBuild.ccpose / Pose.hh
loop_build / LoopBuild.ccio / pdb / pose_io.hh
loop_build / LoopBuild.ccscoring / ScoreFunction.hh
loop_build / LoopBuild.ccio / silent / silent.fwd.hh
loop_build / LoopBuild.ccio / silent / SilentStructFactory.hh
loop_build / LoopBuild.cctypes.hh
loop_build / LoopBuild.ccscoring / electron_density / util.hh
loop_build / LoopBuild.ccpose / util.hh
loop_build / LoopBuildMover.ccimport_pose / import_pose.hh
loop_build / LoopBuildMover.ccscoring / ScoreFunction.hh
loop_build / LoopBuildMover.ccscoring / electron_density / util.hh
loop_build / LoopBuildMover.ccpose / util.hh
loop_build / LoopBuildMover.hhpose / Pose.hh
loops / loop_closure / ccd / LoopClosure.ccfragment / BBTorsionSRFD.hh
loops / loop_closure / ccd / LoopClosure.ccfragment / FragData.hh
loops / loop_closure / ccd / LoopClosure.ccfragment / FragSet.hh
loops / loop_closure / ccd / LoopClosure.ccfragment / Frame.hh
loops / loop_closure / ccd / LoopClosure.cckinematics / MoveMap.hh
loops / loop_closure / ccd / LoopClosure.ccpose / Pose.hh
loops / loop_closure / ccd / LoopClosure.ccscoring / ScoreFunction.hh
loops / loop_closure / ccd / LoopClosure.hhfragment / FragSet.fwd.hh
loops / loop_closure / ccd / LoopClosure.hhfragment / Frame.hh
loops / loop_closure / ccd / LoopClosure.hhkinematics / MoveMap.fwd.hh
loops / loop_closure / ccd / LoopClosure.hhpose / Pose.fwd.hh
loops / loop_closure / ccd / LoopClosure.hhscoring / ScoreFunction.fwd.hh
loops / loop_closure / ccd / LoopClosure.hhtypes.hh
loops / loopfinder.ccid / AtomID.hh
protein_interface_design / movers / LoopFinder.ccconformation / Conformation.fwd.hh
loops / loopfinder.ccconformation / Conformation.hh
loops / loopfinder.ccscoring / dssp / Dssp.hh
protein_interface_design / movers / LoopFinder.ccpack / task / PackerTask.hh
protein_interface_design / movers / LoopFinder.ccpose / Pose.hh
loops / loopfinder.ccpose / Pose.hh
protein_interface_design / movers / LoopFinder.ccconformation / Residue.hh
loops / loopfinder.ccconformation / Residue.hh
protein_interface_design / movers / LoopFinder.ccscoring / ScoreFunction.hh
protein_interface_design / movers / LoopFinder.ccpose / selection.hh
protein_interface_design / movers / LoopFinder.ccpack / task / TaskFactory.hh
protein_interface_design / movers / LoopFinder.hhpose / Pose.fwd.hh
loops / loopfinder.hhpose / Pose.fwd.hh
protein_interface_design / movers / LoopFinder.hhtypes.hh
topology_broker / LoopFragmentClaimer.ccfragment / FragSet.hh
topology_broker / LoopFragmentClaimer.cckinematics / MoveMap.hh
topology_broker / LoopFragmentClaimer.hhkinematics / MoveMap.hh
topology_broker / LoopFragmentClaimer.hhpose / Pose.fwd.hh
sic_dock / loophash_util.ccchemical / ChemicalManager.hh
sic_dock / loophash_util.ccconformation / ResidueFactory.hh
sic_dock / loophash_util.ccchemical / ResidueTypeSet.hh
sic_dock / loophash_util.ccpose / util.hh
sic_dock / loophash_util.hhpose / Pose.fwd.hh
sic_dock / loophash_util.hhkinematics / Stub.hh
sic_dock / loophash_util.hhtypes.hh
loophash / LoopHashDiversifier.ccid / AtomID.hh
loophash / LoopHashDiversifier.ccchemical / ChemicalManager.fwd.hh
loophash / LoopHashDiversifier.ccpose / Pose.hh
loophash / LoopHashDiversifier.ccscoring / ScoreFunction.hh
loophash / LoopHashDiversifier.ccpose / selection.hh
loophash / LoopHashDiversifier.ccio / silent / silent.fwd.hh
loophash / LoopHashDiversifier.ccio / silent / SilentStruct.fwd.hh
loophash / LoopHashDiversifier.ccio / silent / SilentStruct.hh
loophash / LoopHashDiversifier.ccio / silent / SilentStructFactory.hh
loophash / LoopHashDiversifier.ccutil / SwitchResidueTypeSet.hh
loophash / LoopHashDiversifier.ccpose / util.hh
loophash / LoopHashDiversifier.ccpose / symmetry / util.hh
loophash / LoopHashDiversifier.hhpose / Pose.fwd.hh
loophash / LoopHashDiversifier.hhscoring / ScoreFunction.hh
loophash / LoopHashDiversifier.hhio / silent / SilentStruct.hh
loophash / LoopHashDiversifier.hhtypes.hh
loophash / LoopHashLibrary.ccoptimization / AtomTreeMinimizer.hh
loophash / LoopHashLibrary.ccchemical / ChemicalManager.hh
loophash / LoopHashLibrary.cckinematics / Edge.hh
loophash / LoopHashLibrary.cckinematics / FoldTree.hh
loophash / LoopHashLibrary.ccimport_pose / import_pose.hh
loophash / LoopHashLibrary.ccimport_pose / pose_stream / MetaPoseInputStream.hh
loophash / LoopHashLibrary.ccoptimization / MinimizerOptions.hh
loophash / LoopHashLibrary.cckinematics / MoveMap.hh
loophash / LoopHashLibrary.ccscoring / rms_util.hh
loophash / LoopHashLibrary.ccscoring / ScoreFunction.hh
loophash / LoopHashLibrary.ccscoring / ScoreFunctionFactory.hh
loophash / LoopHashLibrary.ccio / silent / SilentFileData.hh
loophash / LoopHashLibrary.ccio / silent / SilentStruct.hh
loophash / LoopHashLibrary.ccio / silent / SilentStructFactory.hh
loophash / LoopHashLibrary.ccutil / SwitchResidueTypeSet.hh
loophash / LoopHashLibrary.ccpose / util.hh
loophash / LoopHashLibrary.ccimport_pose / pose_stream / util.hh
loophash / LoopHashLibrary.hhoptimization / MinimizerOptions.hh
loophash / LoopHashLibrary.hhpose / Pose.fwd.hh
loophash / LoopHashLibrary.hhscoring / ScoreFunction.hh
loophash / LoopHashLibrary.hhio / silent / SilentStruct.fwd.hh
loophash / LoopHashLibrary.hhtypes.hh
loophash / LoopHashMap.cckinematics / FoldTree.hh
loophash / LoopHashMap.cckinematics / Jump.hh
loophash / LoopHashMap.ccpose / Pose.hh
loophash / LoopHashMap.ccconformation / Residue.hh
loophash / LoopHashMap.cckinematics / RT.hh
loophash / LoopHashMap.ccpose / util.hh
loophash / LoopHashMap.hhpose / Pose.fwd.hh
loophash / LoopHashMap.hhtypes.hh
loophash / LoopHashMoverWrapper.ccid / AtomID.hh
loophash / LoopHashMoverWrapper.ccchemical / ChemicalManager.fwd.hh
loophash / LoopHashMoverWrapper.ccpose / Pose.hh
loophash / LoopHashMoverWrapper.ccscoring / ScoreFunction.hh
loophash / LoopHashMoverWrapper.ccpose / selection.hh
loophash / LoopHashMoverWrapper.ccio / silent / silent.fwd.hh
loophash / LoopHashMoverWrapper.ccio / silent / SilentStruct.fwd.hh
loophash / LoopHashMoverWrapper.ccio / silent / SilentStruct.hh
loophash / LoopHashMoverWrapper.ccio / silent / SilentStructFactory.hh
loophash / LoopHashMoverWrapper.ccutil / SwitchResidueTypeSet.hh
loophash / LoopHashMoverWrapper.ccpose / util.hh
loophash / LoopHashMoverWrapper.ccpose / symmetry / util.hh
loophash / LoopHashMoverWrapper.hhpose / Pose.fwd.hh
loophash / LoopHashMoverWrapper.hhscoring / ScoreFunction.hh
loophash / LoopHashMoverWrapper.hhio / silent / SilentStruct.hh
loophash / LoopHashMoverWrapper.hhtypes.hh
loophash / LoopHashRelaxProtocol.ccimport_pose / import_pose.hh
loophash / LoopHashRelaxProtocol.ccoptimization / MinimizerOptions.hh
loophash / LoopHashRelaxProtocol.cckinematics / MoveMap.hh
loophash / LoopHashRelaxProtocol.ccpose / Pose.hh
loophash / LoopHashRelaxProtocol.ccio / silent / ProteinSilentStruct.tmpl.hh
loophash / LoopHashRelaxProtocol.ccscoring / rms_util.hh
loophash / LoopHashRelaxProtocol.ccscoring / ScoreFunction.hh
loophash / LoopHashRelaxProtocol.ccscoring / ScoreFunctionFactory.hh
loophash / LoopHashRelaxProtocol.ccio / silent / SilentStruct.hh
loophash / LoopHashRelaxProtocol.ccio / silent / SilentStructFactory.hh
loophash / LoopHashRelaxProtocol.ccutil / SwitchResidueTypeSet.hh
loophash / LoopHashRelaxProtocol.ccpose / util.hh
loophash / LoopHashRelaxProtocol.hhpose / Pose.fwd.hh
loophash / LoopHashRelaxProtocol.hhscoring / ScoreFunction.hh
loophash / LoopHashRelaxProtocol.hhio / silent / SilentStruct.fwd.hh
loophash / LoopHashRelaxProtocol.hhtypes.hh
loophash / LoopHashSampler.cckinematics / MoveMap.hh
loophash / LoopHashSampler.ccpose / Pose.hh
loophash / LoopHashSampler.ccio / silent / SilentStruct.hh
loophash / LoopHashSampler.ccio / silent / SilentStructFactory.hh
loophash / LoopHashSampler.ccpose / util.hh
loophash / LoopHashSampler.hhpose / Pose.fwd.hh
loophash / LoopHashSampler.hhscoring / ScoreFunction.hh
loophash / LoopHashSampler.hhio / silent / SilentStruct.fwd.hh
loophash / LoopHashSampler.hhtypes.hh
abinitio / LoopJumpFoldCst.ccfragment / FragSet.hh
abinitio / LoopJumpFoldCst.cckinematics / MoveMap.hh
abinitio / LoopJumpFoldCst.ccpose / Pose.hh
abinitio / LoopJumpFoldCst.hhpose / Pose.fwd.hh
abinitio / LoopJumpFoldCst.hhfragment / SecondaryStructure.hh
abinitio / LoopJumpFoldCst.hhtypes.hh
protein_interface_design / movers / LoopLengthChange.ccconformation / Conformation.hh
protein_interface_design / movers / LoopLengthChange.ccpose / PDBInfo.hh
protein_interface_design / movers / LoopLengthChange.ccpose / Pose.hh
protein_interface_design / movers / LoopLengthChange.ccconformation / Residue.hh
protein_interface_design / movers / LoopLengthChange.ccconformation / ResidueFactory.hh
protein_interface_design / movers / LoopLengthChange.ccchemical / ResidueType.hh
protein_interface_design / movers / LoopLengthChange.ccchemical / ResidueTypeSet.hh
protein_interface_design / movers / LoopLengthChange.ccpose / selection.hh
protein_interface_design / movers / LoopLengthChange.hhpose / Pose.fwd.hh
protein_interface_design / movers / LoopLengthChange.hhtypes.hh
loops / loop_mover / LoopMover.ccpose / datacache / cacheable_observers.hh
loops / loop_mover / LoopMover.ccpose / datacache / CacheableObserverType.hh
loops / loop_mover / LoopMover.ccfragment / FragSet.hh
loops / loop_mover / LoopMover.cckinematics / MoveMap.hh
loops / loop_mover / LoopMover.ccpose / datacache / ObserverCache.hh
loops / loop_mover / LoopMover.ccpose / Pose.hh
loops / loop_mover / LoopMover.ccscoring / ScoreFunction.hh
loops / loop_mover / LoopMover.ccconformation / util.hh
loops / loop_mover / LoopMover.hhfragment / FragSet.fwd.hh
loops / loop_mover / LoopMover.hhkinematics / MoveMap.fwd.hh
loops / loop_mover / LoopMover.hhpose / Pose.fwd.hh
loops / loop_mover / LoopMover.hhscoring / ScoreFunction.fwd.hh
loops / loop_mover / LoopMover.hhtypes.hh
loops / loop_mover / refine / LoopMover_Backrub.ccpack / pack_rotamers.hh
loops / loop_mover / refine / LoopMover_Backrub.ccpack / task / PackerTask.hh
loops / loop_mover / refine / LoopMover_Backrub.ccpose / Pose.hh
loops / loop_mover / refine / LoopMover_Backrub.ccconformation / Residue.hh
loops / loop_mover / refine / LoopMover_Backrub.ccscoring / ScoreFunction.hh
loops / loop_mover / refine / LoopMover_Backrub.ccscoring / ScoreFunctionFactory.hh
loops / loop_mover / refine / LoopMover_Backrub.ccpack / task / TaskFactory.hh
loops / loop_mover / refine / LoopMover_Backrub.ccpack / task / operation / TaskOperations.hh
loops / loop_mover / refine / LoopMover_Backrub.ccid / TorsionID.hh
loops / loop_mover / refine / LoopMover_Backrub.hhkinematics / MoveMap.fwd.hh
loops / loop_mover / refine / LoopMover_Backrub.hhpose / Pose.fwd.hh
loops / loop_mover / refine / LoopMover_Backrub.hhscoring / ScoreFunction.fwd.hh
loops / loop_mover / refine / LoopMover_Backrub.hhpack / task / TaskFactory.hh
loops / loop_mover / refine / LoopMover_Backrub.hhtypes.hh
loops / loop_mover / refine / LoopMover_CCD.ccoptimization / AtomTreeMinimizer.hh
loops / loop_mover / perturb / LoopMover_CCD.ccoptimization / AtomTreeMinimizer.hh
loops / loop_mover / refine / LoopMover_CCD.ccscoring / Energies.hh
loops / loop_mover / perturb / LoopMover_CCD.ccscoring / Energies.hh
loops / loop_mover / refine / LoopMover_CCD.cckinematics / FoldTree.hh
loops / loop_mover / perturb / LoopMover_CCD.cckinematics / FoldTree.hh
loops / loop_mover / perturb / LoopMover_CCD.ccfragment / FragSet.hh
loops / loop_mover / perturb / LoopMover_CCD.ccoptimization / MinimizerOptions.hh
loops / loop_mover / refine / LoopMover_CCD.cckinematics / MoveMap.hh
loops / loop_mover / perturb / LoopMover_CCD.cckinematics / MoveMap.hh
loops / loop_mover / refine / LoopMover_CCD.ccpack / task / operation / NoRepackDisulfides.hh
loops / loop_mover / refine / LoopMover_CCD.ccpack / pack_rotamers.hh
loops / loop_mover / refine / LoopMover_CCD.ccpack / task / PackerTask.hh
loops / loop_mover / refine / LoopMover_CCD.ccpose / Pose.hh
loops / loop_mover / perturb / LoopMover_CCD.ccpose / Pose.hh
loops / loop_mover / perturb / LoopMover_CCD.ccconformation / Residue.hh
loops / loop_mover / refine / LoopMover_CCD.ccscoring / ScoreFunction.hh
loops / loop_mover / perturb / LoopMover_CCD.ccscoring / ScoreFunction.hh
loops / loop_mover / refine / LoopMover_CCD.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
loops / loop_mover / perturb / LoopMover_CCD.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
loops / loop_mover / refine / LoopMover_CCD.ccpack / task / TaskFactory.fwd.hh
loops / loop_mover / perturb / LoopMover_CCD.ccpack / task / TaskFactory.fwd.hh
loops / loop_mover / refine / LoopMover_CCD.ccpack / task / TaskFactory.hh
loops / loop_mover / refine / LoopMover_CCD.ccpack / task / operation / TaskOperations.hh
loops / loop_mover / perturb / LoopMover_CCD.ccid / TorsionID.hh
loops / loop_mover / refine / LoopMover_CCD.ccpose / util.hh
loops / loop_mover / refine / LoopMover_CCD.ccpose / symmetry / util.hh
loops / loop_mover / perturb / LoopMover_CCD.ccpose / util.hh
loops / loop_mover / perturb / LoopMover_CCD.ccpose / symmetry / util.hh
loops / loop_mover / perturb / LoopMover_CCD.ccconformation / util.hh
loops / loop_mover / perturb / LoopMover_CCD.ccchemical / VariantType.hh
loops / loop_mover / refine / LoopMover_CCD.hhoptimization / AtomTreeMinimizer.fwd.hh
loops / loop_mover / refine / LoopMover_CCD.hhkinematics / FoldTree.fwd.hh
loops / loop_mover / refine / LoopMover_CCD.hhfragment / FragSet.fwd.hh
loops / loop_mover / perturb / LoopMover_CCD.hhfragment / FragSet.fwd.hh
loops / loop_mover / refine / LoopMover_CCD.hhoptimization / MinimizerOptions.fwd.hh
loops / loop_mover / refine / LoopMover_CCD.hhkinematics / MoveMap.fwd.hh
loops / loop_mover / perturb / LoopMover_CCD.hhkinematics / MoveMap.fwd.hh
loops / loop_mover / refine / LoopMover_CCD.hhpack / task / PackerTask.fwd.hh
loops / loop_mover / refine / LoopMover_CCD.hhpose / Pose.fwd.hh
loops / loop_mover / perturb / LoopMover_CCD.hhpose / Pose.fwd.hh
loops / loop_mover / refine / LoopMover_CCD.hhscoring / ScoreFunction.fwd.hh
loops / loop_mover / perturb / LoopMover_CCD.hhscoring / ScoreFunction.fwd.hh
loops / loop_mover / refine / LoopMover_CCD.hhpack / task / TaskFactory.fwd.hh
loops / loop_mover / perturb / LoopMover_CCD.hhpack / task / TaskFactory.fwd.hh
loops / loop_mover / refine / LoopMover_CCD.hhtypes.hh
loops / loop_mover / perturb / LoopMover_CCD.hhtypes.hh
loops / loop_mover / refine / LoopMover_KIC.ccoptimization / AtomTreeMinimizer.hh
loops / loop_mover / perturb / LoopMover_KIC.ccoptimization / AtomTreeMinimizer.hh
loops / loop_mover / perturb / LoopMover_KIC.ccscoring / Energies.hh
loops / loop_mover / perturb / LoopMover_KIC.cckinematics / FoldTree.hh
loops / loop_mover / refine / LoopMover_KIC.ccoptimization / MinimizerOptions.hh
loops / loop_mover / perturb / LoopMover_KIC.ccoptimization / MinimizerOptions.hh
loops / loop_mover / refine / LoopMover_KIC.cckinematics / MoveMap.hh
loops / loop_mover / perturb / LoopMover_KIC.cckinematics / MoveMap.hh
loops / loop_mover / refine / LoopMover_KIC.ccpack / pack_rotamers.hh
loops / loop_mover / refine / LoopMover_KIC.ccpack / task / PackerTask.hh
loops / loop_mover / refine / LoopMover_KIC.ccpose / Pose.hh
loops / loop_mover / perturb / LoopMover_KIC.ccpose / Pose.hh
loops / loop_mover / refine / LoopMover_KIC.ccconformation / Residue.hh
loops / loop_mover / perturb / LoopMover_KIC.ccconformation / Residue.hh
loops / loop_mover / refine / LoopMover_KIC.ccpack / rotamer_trials.hh
loops / loop_mover / refine / LoopMover_KIC.ccscoring / ScoreFunction.hh
loops / loop_mover / perturb / LoopMover_KIC.ccscoring / ScoreFunction.hh
loops / loop_mover / refine / LoopMover_KIC.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
loops / loop_mover / perturb / LoopMover_KIC.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
loops / loop_mover / refine / LoopMover_KIC.ccpack / task / TaskFactory.hh
loops / loop_mover / refine / LoopMover_KIC.ccpack / task / operation / TaskOperations.hh
loops / loop_mover / refine / LoopMover_KIC.ccid / TorsionID.hh
loops / loop_mover / perturb / LoopMover_KIC.ccid / TorsionID.hh
loops / loop_mover / refine / LoopMover_KIC.ccpose / util.hh
loops / loop_mover / refine / LoopMover_KIC.ccpose / symmetry / util.hh
loops / loop_mover / perturb / LoopMover_KIC.ccpose / util.hh
loops / loop_mover / perturb / LoopMover_KIC.ccpose / symmetry / util.hh
loops / loop_mover / refine / LoopMover_KIC.ccchemical / VariantType.hh
loops / loop_mover / perturb / LoopMover_KIC.ccchemical / VariantType.hh
loops / loop_mover / refine / LoopMover_KIC.hhkinematics / MoveMap.fwd.hh
loops / loop_mover / perturb / LoopMover_KIC.hhkinematics / MoveMap.fwd.hh
loops / loop_mover / refine / LoopMover_KIC.hhpack / task / PackerTask.fwd.hh
loops / loop_mover / perturb / LoopMover_KIC.hhpack / task / PackerTask.fwd.hh
loops / loop_mover / refine / LoopMover_KIC.hhpose / Pose.fwd.hh
loops / loop_mover / perturb / LoopMover_KIC.hhpose / Pose.fwd.hh
loops / loop_mover / refine / LoopMover_KIC.hhscoring / ScoreFunction.fwd.hh
loops / loop_mover / perturb / LoopMover_KIC.hhscoring / ScoreFunction.fwd.hh
loops / loop_mover / refine / LoopMover_KIC.hhpack / task / TaskFactory.fwd.hh
loops / loop_mover / perturb / LoopMover_KIC.hhpack / task / TaskFactory.fwd.hh
loops / loop_mover / refine / LoopMover_KIC.hhtypes.hh
loops / loop_mover / perturb / LoopMover_KIC.hhtypes.hh
loops / loop_mover / perturb / LoopMover_QuickCCD.ccoptimization / AtomTreeMinimizer.hh
loops / loop_mover / perturb / LoopMover_QuickCCD.ccscoring / constraints / ConstraintSet.hh
loops / loop_mover / perturb / LoopMover_QuickCCD.ccscoring / Energies.hh
loops / loop_mover / perturb / LoopMover_QuickCCD.cckinematics / FoldTree.hh
loops / loop_mover / perturb / LoopMover_QuickCCD.ccfragment / FragSet.hh
loops / loop_mover / perturb / LoopMover_QuickCCD.ccoptimization / MinimizerOptions.hh
loops / loop_mover / perturb / LoopMover_QuickCCD.cckinematics / MoveMap.hh
loops / loop_mover / perturb / LoopMover_QuickCCD.ccpose / Pose.hh
loops / loop_mover / perturb / LoopMover_QuickCCD.ccconformation / Residue.hh
loops / loop_mover / perturb / LoopMover_QuickCCD.ccscoring / ScoreFunction.hh
loops / loop_mover / perturb / LoopMover_QuickCCD.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
loops / loop_mover / perturb / LoopMover_QuickCCD.ccconformation / symmetry / SymmetricConformation.hh
loops / loop_mover / perturb / LoopMover_QuickCCD.ccconformation / symmetry / SymmetryInfo.hh
loops / loop_mover / perturb / LoopMover_QuickCCD.ccid / TorsionID.hh
loops / loop_mover / perturb / LoopMover_QuickCCD.ccpose / util.hh
loops / loop_mover / perturb / LoopMover_QuickCCD.ccpose / symmetry / util.hh
loops / loop_mover / perturb / LoopMover_QuickCCD.ccchemical / VariantType.hh
loops / loop_mover / perturb / LoopMover_QuickCCD.hhfragment / FragSet.fwd.hh
loops / loop_mover / perturb / LoopMover_QuickCCD.hhkinematics / MoveMap.fwd.hh
loops / loop_mover / perturb / LoopMover_QuickCCD.hhpose / Pose.fwd.hh
loops / loop_mover / perturb / LoopMover_QuickCCD.hhscoring / ScoreFunction.fwd.hh
loops / loop_mover / perturb / LoopMover_QuickCCD.hhtypes.hh
loops / loop_mover / perturb / LoopMover_QuickCCD_Moves.ccoptimization / AtomTreeMinimizer.hh
loops / loop_mover / perturb / LoopMover_QuickCCD_Moves.ccconformation / Conformation.hh
loops / loop_mover / perturb / LoopMover_QuickCCD_Moves.ccscoring / constraints / ConstraintSet.hh
loops / loop_mover / perturb / LoopMover_QuickCCD_Moves.ccscoring / Energies.hh
loops / loop_mover / perturb / LoopMover_QuickCCD_Moves.cckinematics / FoldTree.hh
loops / loop_mover / perturb / LoopMover_QuickCCD_Moves.ccfragment / FragSet.hh
loops / loop_mover / perturb / LoopMover_QuickCCD_Moves.ccoptimization / MinimizerOptions.hh
loops / loop_mover / perturb / LoopMover_QuickCCD_Moves.cckinematics / MoveMap.hh
loops / loop_mover / perturb / LoopMover_QuickCCD_Moves.ccpose / Pose.hh
loops / loop_mover / perturb / LoopMover_QuickCCD_Moves.ccconformation / Residue.hh
loops / loop_mover / perturb / LoopMover_QuickCCD_Moves.ccscoring / ScoreFunction.hh
loops / loop_mover / perturb / LoopMover_QuickCCD_Moves.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
loops / loop_mover / perturb / LoopMover_QuickCCD_Moves.ccconformation / symmetry / SymmetricConformation.hh
loops / loop_mover / perturb / LoopMover_QuickCCD_Moves.ccconformation / symmetry / SymmetryInfo.hh
loops / loop_mover / perturb / LoopMover_QuickCCD_Moves.ccid / TorsionID.hh
loops / loop_mover / perturb / LoopMover_QuickCCD_Moves.ccpose / util.hh
loops / loop_mover / perturb / LoopMover_QuickCCD_Moves.ccpose / symmetry / util.hh
loops / loop_mover / perturb / LoopMover_QuickCCD_Moves.ccchemical / VariantType.hh
loops / loop_mover / perturb / LoopMover_QuickCCD_Moves.hhkinematics / MoveMap.fwd.hh
loops / loop_mover / perturb / LoopMover_QuickCCD_Moves.hhpose / Pose.fwd.hh
loops / loop_mover / perturb / LoopMover_QuickCCD_Moves.hhscoring / ScoreFunction.fwd.hh
loops / loop_mover / perturb / LoopMover_QuickCCD_Moves.hhtypes.hh
loops / loop_mover / perturb / LoopMover_QuickCCD_MovesCreator.hhtypes.hh
loop_build / LoopMover_SlidingWindow.ccfragment / ConstantLengthFragSet.hh
loop_build / LoopMover_SlidingWindow.ccscoring / Energies.hh
loop_build / LoopMover_SlidingWindow.cckinematics / FoldTree.hh
loop_build / LoopMover_SlidingWindow.cckinematics / MoveMap.hh
loop_build / LoopMover_SlidingWindow.ccpose / Pose.hh
loop_build / LoopMover_SlidingWindow.ccconformation / Residue.hh
loop_build / LoopMover_SlidingWindow.ccscoring / ScoreFunction.hh
loop_build / LoopMover_SlidingWindow.ccid / TorsionID.hh
loop_build / LoopMover_SlidingWindow.ccpose / util.hh
loop_build / LoopMover_SlidingWindow.ccchemical / VariantType.hh
loop_build / LoopMover_SlidingWindow.hhfragment / ConstantLengthFragSet.hh
loop_build / LoopMover_SlidingWindow.hhkinematics / MoveMap.fwd.hh
loop_build / LoopMover_SlidingWindow.hhpose / Pose.fwd.hh
loop_build / LoopMover_SlidingWindow.hhscoring / ScoreFunction.fwd.hh
loop_build / LoopMover_SlidingWindow.hhscoring / ScoreType.hh
loop_build / LoopMover_SlidingWindow.hhid / types.hh
loop_build / LoopMover_SlidingWindow.hhtypes.hh
loops / LoopMoverFactory.hhpose / Pose.fwd.hh
protein_interface_design / movers / LoopMoverFromCommandLine.ccchemical / ChemicalManager.fwd.hh
protein_interface_design / movers / LoopMoverFromCommandLine.ccconformation / Conformation.hh
protein_interface_design / movers / LoopMoverFromCommandLine.ccscoring / dssp / Dssp.hh
protein_interface_design / movers / LoopMoverFromCommandLine.cckinematics / FoldTree.hh
protein_interface_design / movers / LoopMoverFromCommandLine.ccfragment / FragSet.hh
protein_interface_design / movers / LoopMoverFromCommandLine.cckinematics / MoveMap.hh
protein_interface_design / movers / LoopMoverFromCommandLine.ccpack / task / operation / NoRepackDisulfides.hh
protein_interface_design / movers / LoopMoverFromCommandLine.ccpack / task / PackerTask.hh
protein_interface_design / movers / LoopMoverFromCommandLine.ccpose / Pose.hh
protein_interface_design / movers / LoopMoverFromCommandLine.ccscoring / ScoreFunction.hh
protein_interface_design / movers / LoopMoverFromCommandLine.ccutil / SwitchResidueTypeSet.hh
protein_interface_design / movers / LoopMoverFromCommandLine.ccpack / task / TaskFactory.hh
protein_interface_design / movers / LoopMoverFromCommandLine.ccpack / task / operation / TaskOperations.hh
protein_interface_design / movers / LoopMoverFromCommandLine.hhpose / Pose.fwd.hh
protein_interface_design / movers / LoopMoverFromCommandLine.hhtypes.hh
protein_interface_design / movers / LoopOver.ccpose / Pose.hh
protein_interface_design / movers / LoopOver.hhpose / Pose.fwd.hh
protein_interface_design / movers / LoopOver.hhtypes.hh
loops / loop_mover / refine / LoopRefineInnerCycle.cckinematics / MoveMap.hh
loops / loop_mover / refine / LoopRefineInnerCycle.ccpose / Pose.hh
loops / loop_mover / refine / LoopRefineInnerCycle.ccscoring / ScoreFunction.hh
loops / loop_mover / refine / LoopRefineInnerCycle.ccpack / task / TaskFactory.hh
loops / loop_mover / refine / LoopRefineInnerCycle.hhkinematics / MoveMap.fwd.hh
loops / loop_mover / refine / LoopRefineInnerCycle.hhscoring / ScoreFunction.fwd.hh
loops / loop_mover / refine / LoopRefineInnerCycle.hhpack / task / TaskFactory.fwd.hh
loops / loop_mover / refine / LoopRefineInnerCycleContainer.ccpose / Pose.hh
loops / loop_mover / refine / LoopRefineInnerCycleContainer.ccscoring / ScoreFunction.hh
loops / loop_mover / refine / LoopRefineInnerCycleContainer.ccpack / task / TaskFactory.hh
loops / loop_mover / refine / LoopRefineInnerCycleFactory.ccscoring / ScoreFunction.hh
loops / loop_mover / refine / LoopRefineInnerCycleFactory.ccpack / task / TaskFactory.hh
loops / loop_mover / refine / LoopRefineInnerCycleFactory.hhscoring / ScoreFunction.fwd.hh
loops / loop_mover / refine / LoopRefineInnerCycleFactory.hhpack / task / TaskFactory.fwd.hh
loops / looprelax_protocols.ccid / AtomID.hh
loops / looprelax_protocols.ccoptimization / AtomTreeMinimizer.hh
loops / looprelax_protocols.ccconformation / Conformation.hh
loops / looprelax_protocols.ccscoring / constraints / ConstraintSet.hh
loops / looprelax_protocols.ccscoring / constraints / CoordinateConstraint.hh
loops / looprelax_protocols.ccscoring / Energies.fwd.hh
loops / looprelax_protocols.ccscoring / Energies.hh
loops / looprelax_protocols.ccscoring / EnergyMap.hh
loops / looprelax_protocols.cckinematics / FoldTree.hh
loops / looprelax_protocols.ccfragment / FragSet.hh
loops / looprelax_protocols.ccscoring / constraints / Func.hh
loops / looprelax_protocols.ccscoring / constraints / HarmonicFunc.hh
loops / looprelax_protocols.ccoptimization / MinimizerOptions.hh
loops / looprelax_protocols.cckinematics / MoveMap.fwd.hh
loops / looprelax_protocols.cckinematics / MoveMap.hh
loops / looprelax_protocols.ccpack / task / PackerTask.hh
loops / looprelax_protocols.ccpose / Pose.hh
loops / looprelax_protocols.ccio / pdb / pose_io.hh
loops / looprelax_protocols.ccchemical / ResidueType.hh
loops / looprelax_protocols.ccscoring / ScoreFunction.hh
loops / looprelax_protocols.ccpack / task / TaskFactory.hh
loops / looprelax_protocols.cctypes.hh
loops / looprelax_protocols.ccpose / util.hh
loops / looprelax_protocols.ccchemical / VariantType.hh
loops / looprelax_protocols.hhfragment / FragSet.fwd.hh
loops / looprelax_protocols.hhpose / Pose.fwd.hh
loops / looprelax_protocols.hhscoring / ScoreFunction.fwd.hh
loops / looprelax_protocols.hhtypes.hh
comparative_modeling / LoopRelaxMover.ccid / AtomID.hh
comparative_modeling / LoopRelaxMover.ccoptimization / AtomTreeMinimizer.hh
comparative_modeling / LoopRelaxMover.ccscoring / constraints / BoundConstraint.hh
comparative_modeling / LoopRelaxMover.ccchemical / ChemicalManager.fwd.hh
comparative_modeling / LoopRelaxMover.ccscoring / constraints / CoordinateConstraint.hh
comparative_modeling / LoopRelaxMover.ccio / raw_data / DisulfideFile.hh
comparative_modeling / LoopRelaxMover.ccscoring / Energies.hh
comparative_modeling / LoopRelaxMover.ccfragment / FragSet.hh
comparative_modeling / LoopRelaxMover.ccscoring / constraints / HarmonicFunc.hh
comparative_modeling / LoopRelaxMover.ccimport_pose / import_pose.hh
comparative_modeling / LoopRelaxMover.cckinematics / Jump.hh
comparative_modeling / LoopRelaxMover.ccoptimization / MinimizerOptions.hh
comparative_modeling / LoopRelaxMover.cckinematics / MoveMap.hh
comparative_modeling / LoopRelaxMover.ccpack / task / operation / NoRepackDisulfides.hh
comparative_modeling / LoopRelaxMover.ccpack / task / PackerTask.hh
comparative_modeling / LoopRelaxMover.ccpose / Pose.hh
comparative_modeling / LoopRelaxMover.ccio / pdb / pose_io.hh
comparative_modeling / LoopRelaxMover.ccconformation / ResidueFactory.hh
comparative_modeling / LoopRelaxMover.ccchemical / ResidueTypeSet.hh
comparative_modeling / LoopRelaxMover.ccscoring / rms_util.hh
comparative_modeling / LoopRelaxMover.ccscoring / ScoreFunction.hh
comparative_modeling / LoopRelaxMover.ccpose / selection.hh
comparative_modeling / LoopRelaxMover.ccio / silent / silent.fwd.hh
comparative_modeling / LoopRelaxMover.ccutil / SwitchResidueTypeSet.hh
comparative_modeling / LoopRelaxMover.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
comparative_modeling / LoopRelaxMover.ccconformation / symmetry / SymmetricConformation.hh
comparative_modeling / LoopRelaxMover.ccconformation / symmetry / SymmetryInfo.hh
comparative_modeling / LoopRelaxMover.ccpack / task / TaskFactory.hh
comparative_modeling / LoopRelaxMover.ccpack / task / operation / TaskOperations.hh
comparative_modeling / LoopRelaxMover.cctypes.hh
comparative_modeling / LoopRelaxMover.ccpose / symmetry / util.hh
comparative_modeling / LoopRelaxMover.ccscoring / electron_density / util.hh
comparative_modeling / LoopRelaxMover.ccscoring / constraints / util.hh
comparative_modeling / LoopRelaxMover.ccpose / util.hh
comparative_modeling / LoopRelaxMover.ccpose / util.tmpl.hh
comparative_modeling / LoopRelaxMover.ccchemical / VariantType.hh
comparative_modeling / LoopRelaxMover.hhfragment / FragSet.hh
comparative_modeling / LoopRelaxMover.hhscoring / ScoreFunction.fwd.hh
comparative_modeling / LoopRelaxMover.hhpack / task / TaskFactory.fwd.hh
comparative_modeling / LoopRelaxMover.hhtypes.hh
comparative_modeling / LoopRelaxThreadingMover.ccfragment / FragSet.hh
comparative_modeling / LoopRelaxThreadingMover.ccpack / pack_rotamers.hh
comparative_modeling / LoopRelaxThreadingMover.ccpack / task / PackerTask.hh
comparative_modeling / LoopRelaxThreadingMover.ccpose / Pose.hh
comparative_modeling / LoopRelaxThreadingMover.ccscoring / ScoreFunction.hh
comparative_modeling / LoopRelaxThreadingMover.ccscoring / ScoreFunctionFactory.hh
comparative_modeling / LoopRelaxThreadingMover.ccsequence / SequenceAlignment.hh
comparative_modeling / LoopRelaxThreadingMover.ccid / SequenceMapping.hh
comparative_modeling / LoopRelaxThreadingMover.ccpack / task / TaskFactory.hh
comparative_modeling / LoopRelaxThreadingMover.ccsequence / util.hh
comparative_modeling / LoopRelaxThreadingMover.hhfragment / FragSet.hh
comparative_modeling / LoopRelaxThreadingMover.hhtypes.hh
protein_interface_design / movers / LoopRemodel.ccchemical / ChemicalManager.fwd.hh
protein_interface_design / movers / LoopRemodel.ccfragment / ConstantLengthFragSet.hh
protein_interface_design / movers / LoopRemodel.ccscoring / dssp / Dssp.hh
protein_interface_design / movers / LoopRemodel.cckinematics / FoldTree.hh
protein_interface_design / movers / LoopRemodel.ccfragment / picking_old / FragmentLibraryManager.hh
protein_interface_design / movers / LoopRemodel.ccfragment / FragSet.hh
protein_interface_design / movers / LoopRemodel.ccfragment / Frame.hh
protein_interface_design / movers / LoopRemodel.ccfragment / FrameIterator.hh
protein_interface_design / movers / LoopRemodel.ccfragment / FrameIteratorWorker_.hh
protein_interface_design / movers / LoopRemodel.cckinematics / Jump.hh
protein_interface_design / movers / LoopRemodel.cckinematics / MoveMap.hh
protein_interface_design / movers / LoopRemodel.ccpack / task / operation / NoRepackDisulfides.hh
protein_interface_design / movers / LoopRemodel.ccpack / task / operation / OperateOnCertainResidues.hh
protein_interface_design / movers / LoopRemodel.ccpack / task / PackerTask.hh
protein_interface_design / movers / LoopRemodel.ccpose / Pose.hh
protein_interface_design / movers / LoopRemodel.ccchemical / ResidueType.hh
protein_interface_design / movers / LoopRemodel.ccpack / task / operation / ResLvlTaskOperations.hh
protein_interface_design / movers / LoopRemodel.ccscoring / ScoreFunction.hh
protein_interface_design / movers / LoopRemodel.ccpose / selection.hh
protein_interface_design / movers / LoopRemodel.ccutil / SwitchResidueTypeSet.hh
protein_interface_design / movers / LoopRemodel.ccpack / task / TaskFactory.hh
protein_interface_design / movers / LoopRemodel.ccpack / task / operation / TaskOperations.hh
protein_interface_design / movers / LoopRemodel.ccfragment / picking_old / vall / util.hh
protein_interface_design / movers / LoopRemodel.hhfragment / FragSet.fwd.hh
protein_interface_design / movers / LoopRemodel.hhpose / Pose.fwd.hh
protein_interface_design / movers / LoopRemodel.hhtypes.hh
loops / Loops.cckinematics / FoldTree.hh
loops / Loops.ccid / NamedAtomID.hh
loops / Loops.ccpose / Pose.hh
loops / Loops.cctypes.hh
loops / Loops.hhkinematics / MoveMap.fwd.hh
loops / Loops.hhpose / Pose.fwd.hh
loops / Loops.hhid / types.hh
loops / Loops.hhtypes.hh
loops / loops_main.ccfragment / BBTorsionSRFD.hh
loops / loops_main.ccconformation / Conformation.hh
loops / loops_main.ccfragment / ConstantLengthFragSet.hh
loops / loops_main.ccscoring / constraints / ConstraintSet.hh
loops / loops_main.ccscoring / Energies.hh
loops / loops_main.cckinematics / FoldTree.hh
loops / loops_main.ccfragment / FragData.hh
loops / loops_main.ccfragment / FragmentIO.hh
loops / loops_main.ccimport_pose / import_pose.hh
loops / loops_main.cckinematics / MoveMap.hh
loops / loops_main.ccpose / Pose.hh
loops / loops_main.ccconformation / ResidueFactory.hh
loops / loops_main.ccchemical / ResidueSelector.hh
loops / loops_main.ccscoring / rms_util.hh
loops / loops_main.ccid / SequenceMapping.hh
loops / loops_main.ccscoring / TenANeighborGraph.hh
loops / loops_main.ccid / TorsionID.hh
loops / loops_main.cctypes.hh
loops / loops_main.ccconformation / symmetry / util.hh
loops / loops_main.ccpose / symmetry / util.hh
loops / loops_main.ccfragment / util.hh
loops / loops_main.ccpose / util.hh
loops / loops_main.ccconformation / util.hh
loops / loops_main.ccpose / util.tmpl.hh
loops / loops_main.ccchemical / VariantType.hh
loops / loops_main.hhkinematics / FoldTree.fwd.hh
loops / loops_main.hhfragment / FragSet.fwd.hh
loops / loops_main.hhkinematics / MoveMap.fwd.hh
loops / loops_main.hhpose / Pose.fwd.hh
loops / loops_main.hhid / SequenceMapping.fwd.hh
loops / loops_main.hhtypes.hh
loops / loops_definers / LoopsDatabaseDefiner.hhpose / Pose.fwd.hh
loops / loops_definers / LoopsDatabaseDefinerCreator.hhtypes.hh
loops / loops_definers / LoopsDefiner.hhpose / Pose.fwd.hh
loops / loops_definers / LoopsDefinerCreator.hhtypes.hh
loops / loops_definers / LoopsDefinerFactory.hhpose / Pose.fwd.hh
loops / loops_definers / LoopsDefinerLoader.ccpose / Pose.hh
loops / loops_definers / LoopsExplicitDefiner.ccpose / Pose.hh
loops / loops_definers / LoopsExplicitDefiner.hhpose / Pose.fwd.hh
loops / loops_definers / LoopsExplicitDefinerCreator.hhtypes.hh
loops / loops_definers / LoopsFileDefiner.hhpose / Pose.fwd.hh
loops / loops_definers / LoopsFileDefinerCreator.hhtypes.hh
loops / LoopsFileFallbackConfiguration.cctypes.hh
loops / LoopsFileIO.ccpose / PDBInfo.hh
loops / LoopsFileIO.ccpose / Pose.hh
loops / LoopsFileIO.hhpose / Pose.fwd.hh
swa / MainChainTorsionClasses.ccio / silent / BinaryProteinSilentStruct.hh
swa / protein / MainChainTorsionClasses.ccio / silent / BinaryProteinSilentStruct.hh
swa / MainChainTorsionClasses.ccid / NamedAtomID.hh
swa / protein / MainChainTorsionClasses.ccid / NamedAtomID.hh
swa / MainChainTorsionClasses.ccpose / Pose.hh
swa / protein / MainChainTorsionClasses.ccpose / Pose.hh
swa / MainChainTorsionClasses.ccscoring / rms_util.hh
swa / protein / MainChainTorsionClasses.ccscoring / rms_util.hh
swa / MainChainTorsionClasses.ccscoring / rms_util.tmpl.hh
swa / protein / MainChainTorsionClasses.ccscoring / rms_util.tmpl.hh
swa / MainChainTorsionClasses.ccio / silent / SilentFileData.hh
swa / protein / MainChainTorsionClasses.ccio / silent / SilentFileData.hh
swa / MainChainTorsionClasses.cctypes.hh
swa / protein / MainChainTorsionClasses.cctypes.hh
swa / MainChainTorsionClasses.ccpose / util.hh
swa / protein / MainChainTorsionClasses.ccpose / util.hh
swa / protein / MainChainTorsionClasses.ccchemical / util.hh
swa / MainChainTorsionClasses.hhtypes.hh
swa / protein / MainChainTorsionClasses.hhtypes.hh
swa / protein / MainChainTorsionSet.ccio / silent / BinaryProteinSilentStruct.hh
swa / MainChainTorsionSet.cckinematics / Jump.hh
swa / MainChainTorsionSet.ccpose / Pose.fwd.hh
swa / MainChainTorsionSet.ccid / types.hh
swa / MainChainTorsionSet.cctypes.hh
swa / protein / MainChainTorsionSet.cctypes.hh
swa / MainChainTorsionSet.ccpose / util.hh
swa / MainChainTorsionSet.hhtypes.hh
swa / protein / MainChainTorsionSet.hhtypes.hh
loops / make_loops.ccchemical / AA.hh
loops / make_loops.ccconformation / Conformation.hh
loops / make_loops.ccpose / PDBInfo.hh
loops / make_loops.ccpose / Pose.hh
loops / make_loops.hhpose / Pose.fwd.hh
loops / make_loops.hhtypes.hh
simple_moves / MakePolyXMover.ccpose / Pose.hh
simple_moves / MakePolyXMover.ccconformation / Residue.hh
simple_moves / MakePolyXMover.hhpose / Pose.fwd.hh
make_rot_lib / MakeRotLib.ccchemical / ChemicalManager.hh
make_rot_lib / MakeRotLib.ccscoring / Energies.hh
make_rot_lib / MakeRotLib.ccscoring / EnergyMap.hh
make_rot_lib / MakeRotLib.cckinematics / MoveMap.hh
make_rot_lib / MakeRotLib.ccpose / Pose.hh
make_rot_lib / MakeRotLib.ccio / pdb / pose_io.hh
make_rot_lib / MakeRotLib.ccconformation / Residue.hh
make_rot_lib / MakeRotLib.ccchemical / ResidueTypeSet.hh
make_rot_lib / MakeRotLib.ccscoring / ScoreFunction.hh
make_rot_lib / MakeRotLib.ccid / TorsionID.hh
make_rot_lib / MakeRotLib.ccid / types.hh
make_rot_lib / MakeRotLib.cctypes.hh
make_rot_lib / MakeRotLib.hhscoring / ScoreFunction.fwd.hh
make_rot_lib / MakeRotLib.hhtypes.hh
protein_interface_design / movers / MapHotspot.ccchemical / AA.hh
protein_interface_design / movers / MapHotspot.ccconformation / Conformation.hh
protein_interface_design / movers / MapHotspot.cckinematics / Edge.hh
protein_interface_design / movers / MapHotspot.cckinematics / FoldTree.hh
protein_interface_design / movers / MapHotspot.ccgraph / Graph.hh
protein_interface_design / movers / MapHotspot.ccpack / task / PackerTask.hh
protein_interface_design / movers / MapHotspot.ccpose / Pose.hh
protein_interface_design / movers / MapHotspot.ccconformation / ResidueFactory.hh
protein_interface_design / movers / MapHotspot.ccchemical / ResidueType.hh
protein_interface_design / movers / MapHotspot.ccchemical / ResidueTypeSet.hh
protein_interface_design / movers / MapHotspot.ccpack / rotamer_set / RotamerSet.hh
protein_interface_design / movers / MapHotspot.ccpack / rotamer_set / RotamerSetFactory.hh
protein_interface_design / movers / MapHotspot.ccscoring / ScoreFunction.fwd.hh
protein_interface_design / movers / MapHotspot.ccscoring / ScoreFunctionFactory.hh
protein_interface_design / movers / MapHotspot.ccpack / task / TaskFactory.hh
protein_interface_design / movers / MapHotspot.ccpack / task / operation / TaskOperations.hh
protein_interface_design / movers / MapHotspot.ccpose / util.hh
protein_interface_design / movers / MapHotspot.hhpose / Pose.fwd.hh
protein_interface_design / movers / MapHotspot.hhpack / rotamer_set / RotamerSet.fwd.hh
protein_interface_design / movers / MapHotspot.hhscoring / ScoreFunction.hh
protein_interface_design / movers / MapHotspot.hhtypes.hh
match / output / MatchConsolidator.hhtypes.hh
toolbox / match_enzdes_util / MatchConstraintFileInfo.ccpack / rotamer_set / bb_independent_rotamers.hh
toolbox / match_enzdes_util / MatchConstraintFileInfo.ccchemical / Patch.hh
toolbox / match_enzdes_util / MatchConstraintFileInfo.ccconformation / Residue.hh
toolbox / match_enzdes_util / MatchConstraintFileInfo.ccchemical / ResidueTypeSet.hh
toolbox / match_enzdes_util / MatchConstraintFileInfo.ccpose / util.hh
toolbox / match_enzdes_util / MatchConstraintFileInfo.ccchemical / VariantType.hh
toolbox / match_enzdes_util / MatchConstraintFileInfo.hhpose / Pose.fwd.hh
toolbox / match_enzdes_util / MatchConstraintFileInfo.hhconformation / Residue.fwd.hh
toolbox / match_enzdes_util / MatchConstraintFileInfo.hhchemical / ResidueType.fwd.hh
toolbox / match_enzdes_util / MatchConstraintFileInfo.hhchemical / ResidueTypeSet.fwd.hh
toolbox / match_enzdes_util / MatchConstraintFileInfo.hhtypes.hh
match / Matcher.ccscoring / etable / count_pair / CountPairFunction.hh
match / Matcher.ccscoring / etable / count_pair / CountPairGeneric.hh
match / Matcher.ccpose / Pose.hh
match / Matcher.ccpack / dunbrack / SemiRotamericSingleResidueDunbrackLibrary.hh
match / Matcher.ccpack / dunbrack / SingleResidueDunbrackLibrary.hh
match / Matcher.hhid / AtomID.fwd.hh
match / Matcher.hhpose / Pose.fwd.hh
match / Matcher.hhchemical / ResidueType.fwd.hh
match / Matcher.hhtypes.hh
match / MatcherMover.ccid / AtomID.hh
match / MatcherMover.ccchemical / ChemicalManager.hh
match / MatcherMover.ccconformation / Conformation.hh
match / MatcherMover.ccpose / Pose.hh
match / MatcherMover.ccconformation / Residue.hh
match / MatcherMover.ccconformation / ResidueFactory.hh
match / MatcherMover.ccchemical / ResidueType.hh
match / MatcherMover.ccchemical / ResidueTypeSet.hh
match / MatcherMover.hhpose / Pose.fwd.hh
match / MatcherMover.hhconformation / Residue.fwd.hh
match / MatcherMover.hhtypes.hh
match / MatcherTask.ccchemical / ChemicalManager.hh
match / MatcherTask.ccconformation / Conformation.hh
match / MatcherTask.ccscoring / constraints / Func.hh
match / MatcherTask.ccpose / PDBInfo.hh
match / MatcherTask.ccpose / Pose.hh
match / MatcherTask.ccconformation / Residue.hh
match / MatcherTask.ccchemical / ResidueType.hh
match / MatcherTask.hhid / AtomID.fwd.hh
match / MatcherTask.hhpose / Pose.fwd.hh
match / MatcherTask.hhtypes.hh
match / output / MatchEvaluator.hhtypes.hh
match / output / MatchGrouper.hhtypes.hh
match / MatchPositionModifiers.ccchemical / AA.hh
match / MatchPositionModifiers.ccscoring / dssp / Dssp.hh
match / MatchPositionModifiers.ccscoring / Energies.hh
match / MatchPositionModifiers.ccpack / task / PackerTask.hh
match / MatchPositionModifiers.ccpose / PDBInfo.hh
match / MatchPositionModifiers.ccpose / Pose.hh
match / MatchPositionModifiers.ccconformation / Residue.hh
match / MatchPositionModifiers.ccchemical / ResidueType.hh
match / MatchPositionModifiers.ccpack / task / TaskFactory.hh
match / MatchPositionModifiers.ccpack / task / operation / TaskOperation.hh
match / MatchPositionModifiers.ccpack / task / operation / TaskOperationFactory.hh
match / MatchPositionModifiers.ccscoring / TenANeighborGraph.hh
match / MatchPositionModifiers.hhpose / Pose.fwd.hh
match / MatchPositionModifiers.hhpack / task / operation / TaskOperation.fwd.hh
match / MatchPositionModifiers.hhtypes.hh
fldsgn / MatchResidues.ccid / AtomID_Map.hh
fldsgn / MatchResidues.ccimport_pose / import_pose.hh
fldsgn / MatchResidues.ccpose / Pose.hh
fldsgn / MatchResidues.ccchemical / ResidueType.hh
fldsgn / MatchResidues.ccscoring / rms_util.hh
fldsgn / MatchResidues.cctypes.hh
fldsgn / MatchResidues.ccpose / util.hh
fldsgn / MatchResidues.hhpose / Pose.hh
fldsgn / MatchResidues.hhpack / task / TaskFactory.fwd.hh
fldsgn / MatchResidues.hhpack / task / operation / TaskOperation.fwd.hh
fldsgn / MatchResiduesMover.ccimport_pose / import_pose.hh
fldsgn / MatchResiduesMover.ccpose / Pose.hh
fldsgn / MatchResiduesMover.ccchemical / ResidueType.hh
fldsgn / MatchResiduesMover.ccscoring / rms_util.hh
fldsgn / MatchResiduesMover.cctypes.hh
fldsgn / MatchResiduesMover.hhpose / Pose.hh
fldsgn / MatchResiduesMover.hhpack / task / TaskFactory.fwd.hh
fldsgn / MatchResiduesMover.hhpack / task / operation / TaskOperation.fwd.hh
match / MatchSet.ccgraph / DisjointSets.hh
constraints_additional / MaxSeqSepConstraintSet.ccscoring / constraints / Constraint.fwd.hh
constraints_additional / MaxSeqSepConstraintSet.ccscoring / constraints / ConstraintSet.hh
constraints_additional / MaxSeqSepConstraintSet.cckinematics / FoldTree.hh
constraints_additional / MaxSeqSepConstraintSet.ccpose / Pose.hh
constraints_additional / MaxSeqSepConstraintSet.ccconformation / Residue.hh
constraints_additional / MaxSeqSepConstraintSet.ccscoring / ScoreFunction.hh
constraints_additional / MaxSeqSepConstraintSet.ccscoring / ScoreType.hh
constraints_additional / MaxSeqSepConstraintSet.ccid / SequenceMapping.hh
constraints_additional / MaxSeqSepConstraintSet.cckinematics / ShortestPathInFoldTree.hh
constraints_additional / MaxSeqSepConstraintSet.cctypes.hh
constraints_additional / MaxSeqSepConstraintSet.ccscoring / constraints / XYZ_Func.hh
constraints_additional / MaxSeqSepConstraintSet.hhscoring / constraints / ConstraintSet.hh
constraints_additional / MaxSeqSepConstraintSet.hhscoring / MinimizationData.fwd.hh
constraints_additional / MaxSeqSepConstraintSet.hhpose / Pose.fwd.hh
constraints_additional / MaxSeqSepConstraintSet.hhscoring / ScoreFunction.fwd.hh
constraints_additional / MaxSeqSepConstraintSet.hhscoring / ScoreType.hh
constraints_additional / MaxSeqSepConstraintSet.hhkinematics / ShortestPathInFoldTree.hh
constraints_additional / MaxSeqSepConstraintSet.hhtypes.hh
cartesian / md.ccconformation / Atom.hh
cartesian / md.ccid / AtomID.hh
cartesian / md.ccconformation / Conformation.hh
cartesian / md.ccscoring / Energies.hh
cartesian / md.ccscoring / EnergyMap.hh
cartesian / md.ccpose / Pose.hh
cartesian / md.ccconformation / Residue.hh
cartesian / md.ccchemical / ResidueType.hh
cartesian / md.ccscoring / ScoreFunction.hh
cartesian / md.ccscoring / ScoreType.hh
cartesian / md.ccoptimization / types.hh
cartesian / md.hhoptimization / DOF_Node.hh
cartesian / md.hhoptimization / MinimizerMap.hh
cartesian / md.hhkinematics / MoveMap.hh
cartesian / md.hhpose / Pose.fwd.hh
cartesian / md.hhconformation / Residue.fwd.hh
cartesian / md.hhscoring / ScoreFunction.fwd.hh
cartesian / md.hhoptimization / types.hh
medal / MedalExchangeMover.ccid / AtomID.hh
medal / MedalExchangeMover.ccconformation / Conformation.hh
medal / MedalExchangeMover.ccscoring / constraints / Constraint.hh
medal / MedalExchangeMover.ccscoring / constraints / ConstraintIO.hh
medal / MedalExchangeMover.ccscoring / constraints / ConstraintSet.hh
medal / MedalExchangeMover.ccscoring / constraints / CoordinateConstraint.hh
medal / MedalExchangeMover.ccscoring / Energies.hh
medal / MedalExchangeMover.cckinematics / FoldTree.hh
medal / MedalExchangeMover.ccfragment / FragmentIO.hh
medal / MedalExchangeMover.ccfragment / FragSet.hh
medal / MedalExchangeMover.ccscoring / constraints / HarmonicFunc.hh
medal / MedalExchangeMover.ccutil / kinematics_util.hh
medal / MedalExchangeMover.ccpose / Pose.hh
medal / MedalExchangeMover.ccscoring / ScoreFunction.hh
medal / MedalExchangeMover.ccfragment / SecondaryStructure.hh
medal / MedalExchangeMover.cctypes.hh
medal / MedalExchangeMover.hhkinematics / FoldTree.fwd.hh
medal / MedalExchangeMover.hhfragment / FragSet.fwd.hh
medal / MedalExchangeMover.hhpose / Pose.fwd.hh
medal / MedalExchangeMover.hhfragment / SecondaryStructure.fwd.hh
medal / MedalExchangeMover.hhtypes.hh
medal / MedalMover.ccutil / ChainbreakUtil.hh
medal / MedalMover.ccchemical / ChemicalManager.fwd.hh
medal / MedalMover.ccscoring / methods / EnergyMethodOptions.hh
medal / MedalMover.cckinematics / FoldTree.hh
medal / MedalMover.ccfragment / FragmentIO.hh
medal / MedalMover.ccfragment / FragSet.hh
medal / MedalMover.ccimport_pose / import_pose.hh
medal / MedalMover.ccutil / kinematics_util.hh
medal / MedalMover.ccpose / Pose.hh
medal / MedalMover.ccscoring / ScoreFunction.hh
medal / MedalMover.ccscoring / ScoreFunctionFactory.hh
medal / MedalMover.ccsequence / SequenceAlignment.hh
medal / MedalMover.ccio / silent / SilentFileData.hh
medal / MedalMover.ccio / silent / SilentStruct.hh
medal / MedalMover.ccio / silent / SilentStructFactory.hh
medal / MedalMover.ccutil / SwitchResidueTypeSet.hh
medal / MedalMover.ccscoring / constraints / util.hh
medal / MedalMover.ccpose / util.hh
medal / MedalMover.hhkinematics / FoldTree.fwd.hh
medal / MedalMover.hhfragment / FragSet.fwd.hh
medal / MedalMover.hhpose / Pose.fwd.hh
medal / MedalMover.hhscoring / ScoreFunction.fwd.hh
medal / MedalMover.hhsequence / SequenceAlignment.fwd.hh
abinitio / MembraneAbinitio.ccpose / datacache / CacheableDataType.hh
abinitio / MembraneAbinitio.ccfragment / FragSet.hh
abinitio / MembraneAbinitio.ccscoring / MembranePotential.fwd.hh
abinitio / MembraneAbinitio.ccscoring / MembranePotential.hh
abinitio / MembraneAbinitio.ccscoring / MembraneTopology.hh
abinitio / MembraneAbinitio.cckinematics / MoveMap.hh
abinitio / MembraneAbinitio.ccpose / Pose.hh
abinitio / MembraneAbinitio.ccio / silent / ProteinSilentStruct.hh
abinitio / MembraneAbinitio.ccio / silent / ProteinSilentStruct.tmpl.hh
abinitio / MembraneAbinitio.ccscoring / ScoreFunction.fwd.hh
abinitio / MembraneAbinitio.ccscoring / ScoreFunctionFactory.hh
abinitio / MembraneAbinitio.ccscoring / ScoreType.hh
abinitio / MembraneAbinitio.ccio / silent / SilentFileData.hh
abinitio / MembraneAbinitio.cctypes.hh
abinitio / MembraneAbinitio.hhfragment / FragSet.fwd.hh
abinitio / MembraneAbinitio.hhscoring / MembranePotential.fwd.hh
abinitio / MembraneAbinitio.hhscoring / MembraneTopology.fwd.hh
abinitio / MembraneAbinitio.hhkinematics / MoveMap.fwd.hh
abinitio / MembraneAbinitio.hhpose / Pose.fwd.hh
abinitio / MembraneAbinitio.hhscoring / ScoreFunction.fwd.hh
abinitio / MembraneAbinitio.hhscoring / ScoreType.hh
abinitio / MembraneAbinitio.hhtypes.hh
jumping / MembraneJump.ccpose / datacache / CacheableDataType.hh
jumping / MembraneJump.ccconformation / Conformation.hh
jumping / MembraneJump.cckinematics / FoldTree.hh
jumping / MembraneJump.cckinematics / Jump.hh
jumping / MembraneJump.ccscoring / MembraneTopology.hh
jumping / MembraneJump.ccid / NamedStubID.hh
jumping / MembraneJump.ccscoring / dssp / PairingsList.fwd.hh
jumping / MembraneJump.ccscoring / dssp / PairingsList.hh
jumping / MembraneJump.ccpose / Pose.hh
jumping / MembraneJump.ccpose / util.hh
jumping / MembraneJump.ccchemical / VariantType.hh
jumping / MembraneJump.hhscoring / dssp / PairingsList.fwd.hh
jumping / MembraneJump.hhpose / Pose.fwd.hh
jumping / MembraneJump.hhtypes.hh
simple_moves / MembraneTopology.ccpose / datacache / CacheableDataType.hh
simple_moves / MembraneTopology.ccscoring / MembraneTopology.hh
simple_moves / MembraneTopology.ccpose / Pose.hh
simple_moves / MembraneTopology.hhpose / Pose.fwd.hh
simple_moves / MembraneTopology.hhtypes.hh
topology_broker / MembraneTopologyClaimer.ccpose / datacache / CacheableDataType.hh
topology_broker / MembraneTopologyClaimer.ccchemical / ChemicalManager.hh
topology_broker / MembraneTopologyClaimer.cckinematics / FoldTree.hh
topology_broker / MembraneTopologyClaimer.ccscoring / MembraneTopology.hh
topology_broker / MembraneTopologyClaimer.ccpose / Pose.hh
topology_broker / MembraneTopologyClaimer.ccconformation / Residue.hh
topology_broker / MembraneTopologyClaimer.ccconformation / ResidueFactory.hh
topology_broker / MembraneTopologyClaimer.ccchemical / ResidueTypeSet.hh
topology_broker / MembraneTopologyClaimer.ccpose / symmetry / util.hh
topology_broker / MembraneTopologyClaimer.hhpose / Pose.hh
topology_broker / MetalloClaimer.ccchemical / ChemicalManager.hh
topology_broker / MetalloClaimer.ccpose / Pose.hh
topology_broker / MetalloClaimer.ccchemical / ResidueType.hh
topology_broker / MetalloClaimer.ccchemical / ResidueTypeSet.hh
topology_broker / MetalloClaimer.hhkinematics / MoveMap.hh
topology_broker / MetalloClaimer.hhpose / Pose.fwd.hh
noesy_assign / MethylNames.ccchemical / AA.hh
noesy_assign / MethylNames.hhchemical / AA.hh
noesy_assign / MethylNames.hhid / NamedAtomID.hh
noesy_assign / MethylNames.hhtypes.hh
multistate_design / MetricCalculatorFitnessFunction.ccpose / metrics / CalculatorFactory.hh
multistate_design / MetricCalculatorFitnessFunction.ccpose / Pose.hh
multistate_design / MetricCalculatorFitnessFunction.hhpose / Pose.fwd.hh
multistate_design / MetricCalculatorFitnessFunction.hhtypes.hh
canonical_sampling / MetricRecorder.ccscoring / Energies.hh
canonical_sampling / MetricRecorder.ccpose / Pose.hh
canonical_sampling / MetricRecorder.ccpose / selection.hh
canonical_sampling / MetricRecorder.ccid / TorsionID.hh
canonical_sampling / MetricRecorder.hhpose / Pose.fwd.hh
canonical_sampling / MetricRecorder.hhid / TorsionID.fwd.hh
canonical_sampling / MetricRecorder.hhtypes.hh
docking / metrics.cckinematics / FoldTree.hh
docking / metrics.ccpose / Pose.hh
docking / metrics.ccconformation / Residue.hh
docking / metrics.ccscoring / rms_util.tmpl.hh
docking / metrics.ccscoring / ScoreFunction.hh
docking / metrics.cctypes.hh
docking / metrics.hhpose / Pose.fwd.hh
docking / metrics.hhconformation / Residue.fwd.hh
docking / metrics.hhscoring / ScoreFunction.fwd.hh
docking / metrics.hhtypes.hh
toolbox / pose_metric_calculators / MetricValueGetter.ccpose / Pose.hh
toolbox / pose_metric_calculators / MetricValueGetter.hhpose / Pose.fwd.hh
canonical_sampling / MetropolisHastingsMover.cckinematics / MoveMap.hh
canonical_sampling / MetropolisHastingsMover.ccchemical / ResidueType.hh
canonical_sampling / MetropolisHastingsMover.ccscoring / ScoreFunction.hh
canonical_sampling / MetropolisHastingsMover.ccpack / task / TaskFactory.hh
canonical_sampling / MetropolisHastingsMover.ccpack / task / operation / TaskOperations.hh
canonical_sampling / MetropolisHastingsMover.cctypes.hh
canonical_sampling / MetropolisHastingsMover.hhpose / Pose.fwd.hh
canonical_sampling / MetropolisHastingsMover.hhtypes.hh
frag_picker / scores / MidPhiOut.hhtypes.hh
frag_picker / scores / MidPsiOut.hhtypes.hh
ligand_docking / MinimizeBackbone.cckinematics / tree / Atom.hh
ligand_docking / MinimizeBackbone.cckinematics / AtomTree.hh
ligand_docking / MinimizeBackbone.ccscoring / constraints / CoordinateConstraint.hh
ligand_docking / MinimizeBackbone.cckinematics / Edge.hh
ligand_docking / MinimizeBackbone.cckinematics / FoldTree.hh
ligand_docking / MinimizeBackbone.ccscoring / constraints / HarmonicFunc.hh
ligand_docking / MinimizeBackbone.ccpose / Pose.hh
ligand_docking / MinimizeBackbone.ccconformation / Residue.hh
ligand_docking / MinimizeBackbone.cctypes.hh
ligand_docking / MinimizeBackbone.ccpose / util.hh
ligand_docking / MinimizeBackbone.ccchemical / VariantType.hh
ligand_docking / MinimizeBackbone.hhid / AtomID.fwd.hh
ligand_docking / MinimizeBackbone.hhkinematics / Edge.fwd.hh
ligand_docking / MinimizeBackbone.hhkinematics / FoldTree.fwd.hh
ligand_docking / MinimizeLigand.ccconformation / Conformation.hh
ligand_docking / MinimizeLigand.ccpose / Pose.hh
ligand_docking / MinimizeLigand.cctypes.hh
ligand_docking / MinimizeLigand.ccpose / util.hh
relax / MiniRelax.ccchemical / ChemicalManager.fwd.hh
relax / MiniRelax.ccscoring / constraints / ConstraintSet.fwd.hh
relax / MiniRelax.ccscoring / constraints / ConstraintSet.hh
relax / MiniRelax.cckinematics / Jump.hh
relax / MiniRelax.cckinematics / MoveMap.hh
relax / MiniRelax.ccpose / Pose.hh
relax / MiniRelax.ccscoring / ScoreFunction.hh
relax / MiniRelax.ccscoring / ScoreType.hh
relax / MiniRelax.ccsequence / SequenceAlignment.hh
relax / MiniRelax.ccid / SequenceMapping.hh
relax / MiniRelax.ccutil / SwitchResidueTypeSet.hh
relax / MiniRelax.ccpack / task / TaskFactory.hh
relax / MiniRelax.ccsequence / util.hh
relax / MiniRelax.hhscoring / ScoreFunction.fwd.hh
simple_moves / MinMover.ccoptimization / AtomTreeMinimizer.hh
simple_moves / MinMover.ccoptimization / CartesianMinimizer.hh
simple_moves / MinMover.ccoptimization / MinimizerOptions.hh
simple_moves / MinMover.cckinematics / MoveMap.hh
simple_moves / MinMover.ccpack / task / PackerTask.hh
simple_moves / MinMover.ccpose / Pose.fwd.hh
simple_moves / MinMover.ccscoring / ScoreFunction.hh
simple_moves / MinMover.ccscoring / ScoreFunctionFactory.hh
simple_moves / MinMover.ccpack / task / TaskFactory.hh
simple_moves / MinMover.hhoptimization / MinimizerOptions.fwd.hh
simple_moves / MinMover.hhkinematics / MoveMap.fwd.hh
simple_moves / MinMover.hhpose / Pose.fwd.hh
simple_moves / MinMover.hhscoring / ScoreFunction.fwd.hh
simple_moves / MinMover.hhpack / task / TaskFactory.hh
simple_moves / MinMover.hhid / types.hh
simple_moves / MinMover.hhtypes.hh
simple_moves / MinPackMover.ccpack / min_pack.hh
simple_moves / MinPackMover.ccpack / task / PackerTask.hh
simple_moves / MinPackMover.ccpose / Pose.hh
simple_moves / MinPackMover.ccchemical / ResidueType.hh
simple_moves / MinPackMover.ccscoring / ScoreFunction.hh
simple_moves / MinPackMover.ccscoring / ScoreFunctionFactory.hh
simple_moves / MinPackMover.ccpack / task / TaskFactory.hh
simple_moves / MinPackMover.hhpack / task / PackerTask.fwd.hh
simple_moves / MinPackMover.hhpose / Pose.fwd.hh
simple_moves / MinPackMover.hhscoring / ScoreFunction.fwd.hh
simple_moves / MinPackMover.hhpack / task / TaskFactory.fwd.hh
simple_filters / MinValueEvaluator.hhpose / Pose.fwd.hh
simple_filters / MinValueEvaluator.hhio / silent / silent.fwd.hh
simple_moves / MissingDensityToJumpMover.ccchemical / AA.hh
simple_moves / MissingDensityToJumpMover.cckinematics / FoldTree.hh
simple_moves / MissingDensityToJumpMover.ccpose / Pose.hh
simple_moves / MissingDensityToJumpMover.ccconformation / Residue.hh
simple_moves / MissingDensityToJumpMover.ccchemical / ResidueType.hh
simple_moves / MissingDensityToJumpMover.cctypes.hh
simple_moves / MissingDensityToJumpMover.ccpose / util.hh
simple_moves / MissingDensityToJumpMover.ccchemical / VariantType.hh
simple_moves / MissingDensityToJumpMover.hhpose / Pose.fwd.hh
simple_moves / MissingDensityToJumpMover.hhtypes.hh
antibody2 / ModelCDRH3.ccchemical / ChemicalManager.fwd.hh
antibody2 / ModelCDRH3.ccimport_pose / import_pose.hh
antibody2 / ModelCDRH3.ccpose / PDBInfo.hh
antibody2 / ModelCDRH3.ccscoring / ScoreFunction.hh
antibody2 / ModelCDRH3.ccscoring / ScoreFunctionFactory.hh
antibody2 / ModelCDRH3.ccpack / task / TaskFactory.hh
antibody2 / ModelCDRH3.ccpose / util.hh
antibody2 / ModelCDRH3.hhfragment / FragData.fwd.hh
antibody2 / ModelCDRH3.hhfragment / FragSet.fwd.hh
antibody2 / ModelCDRH3.hhpose / Pose.hh
antibody2 / ModelCDRH3.hhscoring / ScoreFunction.hh
antibody2 / ModelCDRH3.hhpack / task / TaskFactory.hh
toolbox / task_operations / ModifyAnnealer.ccpack / task / PackerTask.hh
toolbox / task_operations / ModifyAnnealer.hhpack / task / PackerTask.fwd.hh
toolbox / task_operations / ModifyAnnealer.hhpose / Pose.fwd.hh
toolbox / task_operations / ModifyAnnealer.hhpack / task / operation / TaskOperation.hh
toolbox / task_operations / ModifyAnnealer.hhtypes.hh
toolbox / task_operations / ModifyAnnealerCreator.hhpack / task / operation / TaskOperationCreator.hh
enzdes / ModifyStoredLigandRBConfsMovers.ccid / AtomID.hh
enzdes / ModifyStoredLigandRBConfsMovers.cckinematics / FoldTree.hh
enzdes / ModifyStoredLigandRBConfsMovers.cckinematics / MoveMap.hh
enzdes / ModifyStoredLigandRBConfsMovers.ccpack / task / PackerTask.hh
enzdes / ModifyStoredLigandRBConfsMovers.ccpose / Pose.hh
enzdes / ModifyStoredLigandRBConfsMovers.ccconformation / Residue.hh
enzdes / ModifyStoredLigandRBConfsMovers.ccpack / rotamer_trials.hh
enzdes / ModifyStoredLigandRBConfsMovers.ccscoring / ScoreFunction.hh
enzdes / ModifyStoredLigandRBConfsMovers.ccpack / task / TaskFactory.hh
enzdes / ModifyStoredLigandRBConfsMovers.hhpose / Pose.fwd.hh
enzdes / ModifyStoredLigandRBConfsMovers.hhconformation / Residue.fwd.hh
enzdes / ModifyStoredLigandRBConfsMovers.hhscoring / ScoreFunction.fwd.hh
enzdes / ModifyStoredLigandRBConfsMovers.hhtypes.hh
simple_moves / ModifyVariantTypeMover.ccchemical / AtomType.hh
simple_moves / ModifyVariantTypeMover.ccpose / Pose.hh
simple_moves / ModifyVariantTypeMover.ccconformation / Residue.hh
simple_moves / ModifyVariantTypeMover.ccchemical / ResidueTypeSet.hh
simple_moves / ModifyVariantTypeMover.ccpack / task / TaskFactory.hh
simple_moves / ModifyVariantTypeMover.ccpose / util.hh
simple_moves / ModifyVariantTypeMover.ccchemical / VariantType.hh
simple_moves / ModifyVariantTypeMover.hhpose / Pose.fwd.hh
simple_moves / ModifyVariantTypeMover.hhpack / task / TaskFactory.fwd.hh
ligand_docking / MolarMassFilter.ccconformation / Conformation.hh
ligand_docking / MolarMassFilter.ccpose / Pose.hh
ligand_docking / MolarMassFilter.cctypes.hh
ligand_docking / MolarMassFilter.ccpose / util.hh
ligand_docking / MolarMassFilter.hhtypes.hh
ligand_docking / MolecularMassFilter.ccconformation / Conformation.hh
ligand_docking / MolecularMassFilter.ccpose / Pose.hh
ligand_docking / MolecularMassFilter.cctypes.hh
ligand_docking / MolecularMassFilter.ccpose / util.hh
ligand_docking / MolecularMassFilter.hhtypes.hh
moves / MonteCarlo.ccscoring / Energies.hh
moves / MonteCarlo.ccpose / Pose.hh
moves / MonteCarlo.ccscoring / ScoreFunction.hh
moves / MonteCarlo.hhpose / Pose.fwd.hh
moves / MonteCarlo.hhscoring / ScoreFunction.fwd.hh
moves / MonteCarlo.hhtypes.hh
moves / MonteCarlo.tmpl.hhchemical / AA.hh
moves / MonteCarlo.tmpl.hhid / AtomID.fwd.hh
moves / MonteCarlo.tmpl.hhkinematics / AtomTree.fwd.hh
moves / MonteCarlo.tmpl.hhconformation / Conformation.fwd.hh
moves / MonteCarlo.tmpl.hhpose / signals / ConformationEvent.fwd.hh
moves / MonteCarlo.tmpl.hhscoring / constraints / Constraint.fwd.hh
moves / MonteCarlo.tmpl.hhscoring / constraints / ConstraintSet.fwd.hh
moves / MonteCarlo.tmpl.hhpose / signals / DestructionEvent.fwd.hh
moves / MonteCarlo.tmpl.hhid / DOF_ID.fwd.hh
moves / MonteCarlo.tmpl.hhscoring / Energies.fwd.hh
moves / MonteCarlo.tmpl.hhpose / signals / EnergyEvent.fwd.hh
moves / MonteCarlo.tmpl.hhkinematics / FoldTree.fwd.hh
moves / MonteCarlo.tmpl.hhpose / signals / GeneralEvent.fwd.hh
moves / MonteCarlo.tmpl.hhkinematics / Jump.fwd.hh
moves / MonteCarlo.tmpl.hhid / NamedAtomID.fwd.hh
moves / MonteCarlo.tmpl.hhid / NamedStubID.fwd.hh
moves / MonteCarlo.tmpl.hhpose / datacache / ObserverCache.fwd.hh
moves / MonteCarlo.tmpl.hhpose / PDBInfo.fwd.hh
moves / MonteCarlo.tmpl.hhpose / Pose.fwd.hh
moves / MonteCarlo.tmpl.hhpose / Pose.hh
moves / MonteCarlo.tmpl.hhpose / metrics / PoseMetricContainer.fwd.hh
moves / MonteCarlo.tmpl.hhconformation / Residue.fwd.hh
moves / MonteCarlo.tmpl.hhchemical / ResidueType.fwd.hh
moves / MonteCarlo.tmpl.hhscoring / ScoreFunction.fwd.hh
moves / MonteCarlo.tmpl.hhkinematics / Stub.fwd.hh
moves / MonteCarlo.tmpl.hhid / TorsionID.fwd.hh
moves / MonteCarlo.tmpl.hhtypes.hh
moves / MonteCarlo.tmpl.hhconformation / signals / XYZEvent.fwd.hh
moves / MonteCarloExceptionConverge.hhpose / Pose.fwd.hh
jd2 / parser / MonteCarloLoader.ccscoring / ScoreFunction.hh
jd2 / parser / MonteCarloLoader.hhpose / Pose.fwd.hh
simple_moves / MonteCarloRecover.ccpose / Pose.hh
simple_moves / MonteCarloRecover.hhpose / Pose.fwd.hh
simple_moves / MonteCarloRecover.hhtypes.hh
simple_moves / MonteCarloTest.ccpose / Pose.hh
simple_moves / MonteCarloTest.hhpose / Pose.fwd.hh
simple_moves / MonteCarloTest.hhtypes.hh
motifs / Motif.ccconformation / Atom.hh
motifs / Motif.ccchemical / AtomType.hh
motifs / Motif.ccchemical / AtomTypeSet.hh
motifs / Motif.ccchemical / ChemicalManager.hh
motifs / Motif.ccgraph / Graph.hh
motifs / Motif.cckinematics / Jump.hh
motifs / Motif.ccpack / packer_neighbors.hh
motifs / Motif.ccpack / task / PackerTask.hh
motifs / Motif.ccpose / PDBInfo.hh
motifs / Motif.ccpose / Pose.hh
motifs / Motif.ccconformation / Residue.hh
motifs / Motif.ccchemical / ResidueType.hh
motifs / Motif.ccchemical / ResidueTypeSet.hh
motifs / Motif.ccpack / rotamer_set / RotamerSet.hh
motifs / Motif.ccpack / rotamer_set / RotamerSetFactory.hh
motifs / Motif.ccscoring / ScoreFunction.hh
motifs / Motif.ccscoring / ScoreType.hh
motifs / Motif.ccpack / task / TaskFactory.hh
motifs / Motif.hhconformation / Atom.fwd.hh
motifs / Motif.hhkinematics / Jump.hh
motifs / Motif.hhpose / Pose.fwd.hh
motifs / Motif.hhconformation / Residue.fwd.hh
motifs / Motif.hhpack / rotamer_set / RotamerSet.fwd.hh
motifs / Motif.hhtypes.hh
motifs / motif_utils.ccid / AtomID.hh
motifs / motif_utils.ccscoring / dna / base_geometry.hh
motifs / motif_utils.ccscoring / dna / BasePartner.hh
motifs / motif_utils.ccchemical / ChemicalManager.hh
motifs / motif_utils.ccscoring / constraints / ConstraintSet.hh
motifs / motif_utils.ccscoring / constraints / CoordinateConstraint.hh
motifs / motif_utils.ccgraph / Graph.hh
motifs / motif_utils.ccscoring / constraints / HarmonicFunc.hh
motifs / motif_utils.ccimport_pose / import_pose.hh
motifs / motif_utils.cckinematics / Jump.hh
motifs / motif_utils.ccpack / pack_rotamers.hh
motifs / motif_utils.ccpack / packer_neighbors.hh
motifs / motif_utils.ccpack / task / PackerTask.hh
motifs / motif_utils.ccpose / PDBInfo.hh
motifs / motif_utils.ccpose / PDBPoseMap.hh
motifs / motif_utils.ccpose / Pose.hh
motifs / motif_utils.ccconformation / Residue.functions.hh
motifs / motif_utils.ccconformation / Residue.hh
motifs / motif_utils.ccconformation / ResidueFactory.hh
motifs / motif_utils.ccchemical / ResidueSelector.hh
motifs / motif_utils.ccchemical / ResidueType.hh
motifs / motif_utils.ccchemical / ResidueTypeSet.hh
motifs / motif_utils.ccpack / rotamer_set / RotamerSet.hh
motifs / motif_utils.ccpack / rotamer_set / RotamerSetFactory.hh
motifs / motif_utils.cckinematics / RT.hh
motifs / motif_utils.ccscoring / ScoreFunction.hh
motifs / motif_utils.ccscoring / ScoreFunctionFactory.hh
motifs / motif_utils.ccscoring / dna / setup.hh
motifs / motif_utils.ccpack / task / TaskFactory.hh
motifs / motif_utils.cctypes.hh
motifs / motif_utils.hhchemical / AA.hh
motifs / motif_utils.hhscoring / constraints / ConstraintSet.fwd.hh
motifs / motif_utils.hhpose / Pose.fwd.hh
motifs / motif_utils.hhconformation / Residue.fwd.hh
motifs / motif_utils.hhpack / rotamer_set / RotamerSet.fwd.hh
motifs / motif_utils.hhtypes.hh
motifs / MotifDnaPacker.ccscoring / dna / BasePartner.hh
motifs / MotifDnaPacker.ccpack / task / operation / OperateOnCertainResidues.hh
motifs / MotifDnaPacker.ccpack / task / PackerTask.hh
motifs / MotifDnaPacker.ccpose / PDBInfo.hh
motifs / MotifDnaPacker.ccpose / Pose.hh
motifs / MotifDnaPacker.ccconformation / Residue.hh
motifs / MotifDnaPacker.ccchemical / ResidueType.hh
motifs / MotifDnaPacker.ccchemical / ResidueTypeSet.hh
motifs / MotifDnaPacker.ccpack / task / operation / ResLvlTaskOperations.hh
motifs / MotifDnaPacker.ccscoring / ScoreFunction.hh
motifs / MotifDnaPacker.ccpack / task / TaskFactory.hh
motifs / MotifDnaPacker.ccpack / task / operation / TaskOperations.hh
motifs / MotifDnaPacker.cctypes.hh
motifs / MotifDnaPacker.ccpose / util.hh
motifs / MotifDnaPacker.ccchemical / VariantType.hh
motifs / MotifDnaPacker.hhpose / Pose.fwd.hh
motifs / MotifDnaPacker.hhpack / rotamer_set / RotamerSet.fwd.hh
motifs / MotifDnaPacker.hhscoring / ScoreFunction.fwd.hh
motifs / MotifDnaPacker.hhpack / task / TaskFactory.fwd.hh
motifs / MotifHit.ccpose / Pose.hh
motifs / MotifHit.ccio / pdb / pose_io.hh
motifs / MotifHit.ccconformation / Residue.hh
motifs / MotifHit.hhconformation / Residue.fwd.hh
motifs / MotifHit.hhtypes.hh
motifs / MotifLibrary.hhtypes.hh
motifs / MotifSearch.ccchemical / ChemicalManager.hh
motifs / MotifSearch.ccscoring / constraints / ConstraintSet.hh
motifs / MotifSearch.ccscoring / Energies.hh
motifs / MotifSearch.ccscoring / methods / EnergyMethodOptions.hh
motifs / MotifSearch.cckinematics / MoveMap.hh
motifs / MotifSearch.ccpose / PDBInfo.hh
motifs / MotifSearch.ccpose / Pose.hh
motifs / MotifSearch.ccio / pdb / pose_io.hh
motifs / MotifSearch.ccconformation / Residue.hh
motifs / MotifSearch.ccconformation / ResidueFactory.hh
motifs / MotifSearch.ccchemical / ResidueType.hh
motifs / MotifSearch.ccchemical / ResidueTypeSet.hh
motifs / MotifSearch.ccscoring / rms_util.hh
motifs / MotifSearch.ccpack / rotamer_set / RotamerSet.hh
motifs / MotifSearch.ccpack / rotamer_set / RotamerSetFactory.hh
motifs / MotifSearch.ccscoring / ScoreFunction.hh
motifs / MotifSearch.ccscoring / ScoreFunctionFactory.hh
motifs / MotifSearch.ccscoring / ScoreType.hh
motifs / MotifSearch.hhpose / Pose.fwd.hh
motifs / MotifSearch.hhconformation / Residue.fwd.hh
motifs / MotifSearch.hhpack / rotamer_set / RotamerSet.fwd.hh
motifs / MotifSearch.hhtypes.hh
ligand_docking / MoveMapBuilder.ccconformation / Conformation.hh
ligand_docking / MoveMapBuilder.cckinematics / Edge.hh
ligand_docking / MoveMapBuilder.cckinematics / FoldTree.hh
ligand_docking / MoveMapBuilder.cckinematics / MoveMap.hh
ligand_docking / MoveMapBuilder.ccpose / Pose.hh
ligand_docking / MoveMapBuilder.ccconformation / Residue.hh
ligand_docking / MoveMapBuilder.cctypes.hh
ligand_docking / MoveMapBuilder.ccpose / util.hh
ligand_docking / MoveMapBuilder.hhkinematics / MoveMap.fwd.hh
ligand_docking / MoveMapBuilder.hhpose / Pose.fwd.hh
ligand_docking / MoveMapBuilder.hhtypes.hh
moves / Mover.ccpose / Pose.hh
moves / Mover.hhio / serialization / PipeMap.fwd.hh
moves / Mover.hhpose / Pose.fwd.hh
moves / Mover.hhtypes.hh
loophash / Mover_LoopHashRefine.ccchemical / ChemicalManager.fwd.hh
loophash / Mover_LoopHashRefine.ccimport_pose / import_pose.hh
loophash / Mover_LoopHashRefine.cckinematics / Jump.hh
loophash / Mover_LoopHashRefine.ccoptimization / MinimizerOptions.hh
loophash / Mover_LoopHashRefine.ccpose / Pose.hh
loophash / Mover_LoopHashRefine.ccconformation / Residue.hh
loophash / Mover_LoopHashRefine.ccscoring / rms_util.hh
loophash / Mover_LoopHashRefine.cckinematics / RT.hh
loophash / Mover_LoopHashRefine.ccscoring / ScoreFunction.hh
loophash / Mover_LoopHashRefine.ccscoring / ScoreFunctionFactory.hh
loophash / Mover_LoopHashRefine.ccio / silent / SilentFileData.hh
loophash / Mover_LoopHashRefine.ccio / silent / SilentStruct.hh
loophash / Mover_LoopHashRefine.ccutil / SwitchResidueTypeSet.hh
loophash / Mover_LoopHashRefine.ccpose / util.hh
loophash / Mover_LoopHashRefine.hhkinematics / Jump.hh
moves / MoverContainer.ccpose / Pose.hh
moves / MoverContainer.hhpose / Pose.fwd.hh
moves / MoverContainer.hhtypes.hh
moves / MoverFactory.hhpose / Pose.fwd.hh
wum / MoverList.hhtypes.hh
moves / MoverStatistics.cctypes.hh
moves / MoverStatistics.hhtypes.hh
loophash / MPI_LoopHashRefine.ccio / silent / BinaryProteinSilentStruct.hh
loophash / MPI_LoopHashRefine.ccchemical / ChemicalManager.hh
loophash / MPI_LoopHashRefine.ccscoring / constraints / ConstraintIO.hh
loophash / MPI_LoopHashRefine.ccscoring / constraints / ConstraintSet.hh
loophash / MPI_LoopHashRefine.ccscoring / constraints / HarmonicFunc.hh
loophash / MPI_LoopHashRefine.ccimport_pose / pose_stream / MetaPoseInputStream.hh
loophash / MPI_LoopHashRefine.ccpose / Pose.hh
loophash / MPI_LoopHashRefine.ccio / silent / ProteinSilentStruct.hh
loophash / MPI_LoopHashRefine.ccio / silent / ProteinSilentStruct.tmpl.hh
loophash / MPI_LoopHashRefine.ccchemical / ResidueTypeSet.hh
loophash / MPI_LoopHashRefine.ccscoring / ScoreFunction.hh
loophash / MPI_LoopHashRefine.ccscoring / ScoreFunctionFactory.hh
loophash / MPI_LoopHashRefine.ccio / silent / SilentFileData.hh
loophash / MPI_LoopHashRefine.ccio / silent / SilentStruct.hh
loophash / MPI_LoopHashRefine.ccio / silent / SilentStructFactory.hh
loophash / MPI_LoopHashRefine.ccscoring / constraints / util.hh
loophash / MPI_LoopHashRefine.ccimport_pose / pose_stream / util.hh
loophash / MPI_LoopHashRefine.ccpose / util.hh
loophash / MPI_LoopHashRefine.hhkinematics / Jump.hh
loophash / MPI_LoopHashRefine.hhio / silent / SilentStruct.fwd.hh
loophash / MPI_LoopHashRefine.hhtypes.hh
loophash / MPI_LoopHashRefine_Emperor.ccio / silent / BinaryProteinSilentStruct.hh
loophash / MPI_LoopHashRefine_Emperor.ccio / silent / ProteinSilentStruct.hh
loophash / MPI_LoopHashRefine_Emperor.ccio / silent / SilentStruct.hh
loophash / MPI_LoopHashRefine_Emperor.hhio / silent / SilentStruct.fwd.hh
loophash / MPI_LoopHashRefine_Emperor.hhtypes.hh
loophash / MPI_LoopHashRefine_Master.ccio / silent / BinaryProteinSilentStruct.hh
loophash / MPI_LoopHashRefine_Master.ccchemical / ChemicalManager.hh
loophash / MPI_LoopHashRefine_Master.ccpose / Pose.hh
loophash / MPI_LoopHashRefine_Master.ccio / silent / ProteinSilentStruct.hh
loophash / MPI_LoopHashRefine_Master.ccio / silent / ProteinSilentStruct.tmpl.hh
loophash / MPI_LoopHashRefine_Master.ccscoring / ScoreFunction.hh
loophash / MPI_LoopHashRefine_Master.ccio / silent / SilentFileData.hh
loophash / MPI_LoopHashRefine_Master.ccio / silent / SilentStruct.hh
loophash / MPI_LoopHashRefine_Master.ccio / silent / SilentStructFactory.hh
loophash / MPI_LoopHashRefine_Master.ccutil / SwitchResidueTypeSet.hh
loophash / MPI_LoopHashRefine_Master.ccpose / util.hh
loophash / MPI_LoopHashRefine_Master.hhio / silent / SilentStruct.fwd.hh
loophash / MPI_LoopHashRefine_Master.hhtypes.hh
wum / MPI_Relax.ccchemical / ChemicalManager.hh
wum / MPI_Relax.ccimport_pose / pose_stream / MetaPoseInputStream.hh
wum / MPI_Relax.ccpose / Pose.hh
wum / MPI_Relax.ccchemical / ResidueTypeSet.hh
wum / MPI_Relax.ccscoring / ScoreFunction.hh
wum / MPI_Relax.ccscoring / ScoreFunctionFactory.hh
wum / MPI_Relax.ccio / silent / SilentFileData.hh
wum / MPI_Relax.ccio / silent / SilentStruct.hh
wum / MPI_Relax.ccio / silent / SilentStructFactory.hh
wum / MPI_Relax.ccimport_pose / pose_stream / util.hh
wum / MPI_Relax.hhimport_pose / pose_stream / MetaPoseInputStream.hh
wum / MPI_Relax.hhpose / Pose.fwd.hh
wum / MPI_Relax.hhtypes.hh
wum / MPI_WorkUnitManager.ccio / silent / SilentStruct.hh
wum / MPI_WorkUnitManager.hhpose / Pose.fwd.hh
wum / MPI_WorkUnitManager.hhtypes.hh
wum / MPI_WorkUnitManager_Slave.ccio / silent / SilentStruct.hh
wum / MPI_WorkUnitManager_Slave.hhpose / Pose.fwd.hh
wum / MPI_WorkUnitManager_Slave.hhtypes.hh
jd2 / archive / MPIArchiveJobDistributor.hhpose / Pose.fwd.hh
jd2 / archive / MPIArchiveJobDistributor.hhtypes.hh
canonical_sampling / mc_convergence_checks / MPIBPool_ConvergenceCheck.hhpose / Pose.hh
jd2 / MpiFileBuffer.hhtypes.hh
jd2 / MPIFileBufJobDistributor.hhpose / Pose.fwd.hh
jd2 / MPIFileBufJobDistributor.hhtypes.hh
canonical_sampling / mc_convergence_checks / MPIHPool_ConvergenceCheck.ccpose / Pose.hh
canonical_sampling / mc_convergence_checks / MPIHPool_ConvergenceCheck.ccio / silent / SilentStruct.hh
canonical_sampling / mc_convergence_checks / MPIHPool_ConvergenceCheck.cctypes.hh
canonical_sampling / mc_convergence_checks / MPIHPool_ConvergenceCheck.hhpose / Pose.hh
canonical_sampling / mc_convergence_checks / MPIHPool_ConvergenceCheck.hhio / silent / SilentStruct.hh
canonical_sampling / mc_convergence_checks / MPIHPool_ConvergenceCheck.hhtypes.hh
jd2 / MPIMultiCommJobDistributor.hhpose / Pose.fwd.hh
jd2 / MPIMultiCommJobDistributor.hhtypes.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhchemical / AA.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhid / AtomID.fwd.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhkinematics / AtomTree.fwd.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhconformation / Conformation.fwd.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhpose / signals / ConformationEvent.fwd.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhscoring / constraints / Constraint.fwd.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhscoring / constraints / ConstraintSet.fwd.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhpose / signals / DestructionEvent.fwd.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhid / DOF_ID.fwd.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhscoring / Energies.fwd.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhpose / signals / EnergyEvent.fwd.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhkinematics / FoldTree.fwd.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhpose / signals / GeneralEvent.fwd.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhkinematics / Jump.fwd.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhid / NamedAtomID.fwd.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhid / NamedStubID.fwd.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhpose / datacache / ObserverCache.fwd.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhpose / PDBInfo.fwd.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhpose / Pose.fwd.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhpose / Pose.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhpose / metrics / PoseMetricContainer.fwd.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhconformation / Residue.fwd.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhchemical / ResidueType.fwd.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhchemical / ResidueTypeSet.fwd.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhscoring / ScoreFunction.fwd.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhio / silent / silent.fwd.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhio / silent / SilentEnergy.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhio / silent / SilentFileData.fwd.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhio / silent / SilentStruct.fwd.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhio / silent / SilentStruct.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhkinematics / Stub.fwd.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhid / TorsionID.fwd.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhtypes.hh
canonical_sampling / mc_convergence_checks / MPIPool_ConvergenceCheck.hhconformation / signals / XYZEvent.fwd.hh
jd2 / MPIWorkPartitionJobDistributor.hhpose / Pose.fwd.hh
jd2 / MPIWorkPartitionJobDistributor.hhtypes.hh
jd2 / MPIWorkPoolJobDistributor.hhpose / Pose.fwd.hh
jd2 / MPIWorkPoolJobDistributor.hhtypes.hh
rna / MultipleDomainMover.ccid / AtomID.hh
rna / MultipleDomainMover.ccconformation / Conformation.hh
rna / MultipleDomainMover.cckinematics / FoldTree.hh
rna / MultipleDomainMover.cckinematics / Jump.hh
rna / MultipleDomainMover.ccid / NamedAtomID.hh
rna / MultipleDomainMover.ccpose / Pose.hh
rna / MultipleDomainMover.ccconformation / Residue.hh
rna / MultipleDomainMover.cckinematics / Stub.hh
rna / MultipleDomainMover.cctypes.hh
rna / MultipleDomainMover.hhpose / Pose.fwd.hh
rna / MultipleDomainMover.hhtypes.hh
multistate_design / MultiStateAggregateFunction.cctypes.hh
pack_daemon / MultistateAggregateFunction.hhtypes.hh
multistate_design / MultiStateAggregateFunction.hhtypes.hh
multistate_design / MultiStateEntity.cctypes.hh
multistate_design / MultiStateEntity.hhtypes.hh
pack_daemon / MultistateFitnessFunction.ccimport_pose / import_pose.hh
pack_daemon / MultistateFitnessFunction.ccpose / Pose.hh
multistate_design / MultiStateFitnessFunction.ccpose / Pose.hh
multistate_design / MultiStateFitnessFunction.ccscoring / ScoreFunction.hh
pack_daemon / MultistateFitnessFunction.hhpose / Pose.fwd.hh
multistate_design / MultiStateFitnessFunction.hhpose / Pose.fwd.hh
multistate_design / MultiStateFitnessFunction.hhscoring / ScoreFunction.fwd.hh
multistate_design / MultiStateFitnessFunction.hhtypes.hh
multistate_design / MultiStatePacker.ccpose / Pose.hh
multistate_design / MultiStatePacker.ccconformation / Residue.hh
multistate_design / MultiStatePacker.ccchemical / ResidueType.hh
multistate_design / MultiStatePacker.ccpack / rotamer_set / RotamerSets.hh
multistate_design / MultiStatePacker.ccscoring / ScoreFunction.hh
multistate_design / MultiStatePacker.hhchemical / AA.hh
multistate_design / MultiStatePacker.hhtypes.hh
canonical_sampling / MultiTemperatureTrialCounter.hhtypes.hh
jd2 / MultiThreadingJob.cctypes.hh
jd2 / MultiThreadingJob.hhpose / Pose.fwd.hh
jd2 / MultiThreadingJob.hhtypes.hh
comparative_modeling / MultiThreadingMover.ccid / AtomID.hh
comparative_modeling / MultiThreadingMover.ccid / AtomID_Map.hh
comparative_modeling / MultiThreadingMover.ccid / AtomID_Mask.fwd.hh
comparative_modeling / MultiThreadingMover.ccfragment / FragSet.fwd.hh
comparative_modeling / MultiThreadingMover.cckinematics / MoveMap.fwd.hh
comparative_modeling / MultiThreadingMover.ccpose / Pose.hh
comparative_modeling / MultiThreadingMover.ccconformation / Residue.fwd.hh
comparative_modeling / MultiThreadingMover.ccchemical / ResidueTypeSet.hh
comparative_modeling / MultiThreadingMover.ccscoring / ScoreFunction.fwd.hh
comparative_modeling / MultiThreadingMover.ccscoring / ScoreType.hh
comparative_modeling / MultiThreadingMover.ccsequence / ScoringScheme.fwd.hh
comparative_modeling / MultiThreadingMover.ccsequence / Sequence.hh
comparative_modeling / MultiThreadingMover.ccsequence / SequenceAlignment.hh
comparative_modeling / MultiThreadingMover.ccid / SequenceMapping.hh
comparative_modeling / MultiThreadingMover.cctypes.hh
comparative_modeling / MultiThreadingMover.ccpose / util.hh
comparative_modeling / MultiThreadingMover.ccpose / util.tmpl.hh
comparative_modeling / MultiThreadingMover.hhfragment / FragSet.fwd.hh
comparative_modeling / MultiThreadingMover.hhfragment / FragSet.hh
comparative_modeling / MultiThreadingMover.hhpose / Pose.hh
comparative_modeling / MultiThreadingMover.hhsequence / SequenceAlignment.hh
comparative_modeling / MultiThreadingMover.hhtypes.hh
pmut_scan / Mutant.cctypes.hh
pmut_scan / Mutant.hhtypes.hh
simple_moves / MutateResidue.ccchemical / AA.hh
simple_moves / MutateResidue.cckinematics / Jump.hh
simple_moves / MutateResidue.ccpose / Pose.hh
simple_moves / MutateResidue.ccconformation / Residue.hh
simple_moves / MutateResidue.ccconformation / ResidueFactory.hh
simple_moves / MutateResidue.ccchemical / ResidueTypeSet.hh
simple_moves / MutateResidue.ccpose / selection.hh
simple_moves / MutateResidue.cctypes.hh
simple_moves / MutateResidue.ccconformation / util.hh
simple_moves / MutateResidue.hhpose / Pose.fwd.hh
simple_moves / MutateResidue.hhtypes.hh
fldsgn / potentials / sspot / NatbiasHelicesSheetPotential.hhtypes.hh
fldsgn / potentials / sspot / NatbiasHelixPairPotential.hhpose / Pose.fwd.hh
fldsgn / potentials / sspot / NatbiasHelixPairPotential.hhtypes.hh
fldsgn / potentials / sspot / NatbiasSecondaryStructureEnergy.ccscoring / EnergyMap.hh
fldsgn / potentials / sspot / NatbiasSecondaryStructureEnergy.ccscoring / methods / EnergyMethod.hh
fldsgn / potentials / sspot / NatbiasSecondaryStructureEnergy.ccpose / Pose.hh
fldsgn / potentials / sspot / NatbiasSecondaryStructureEnergy.ccscoring / ScoreType.hh
fldsgn / potentials / sspot / NatbiasSecondaryStructureEnergy.hhscoring / EnergyMap.fwd.hh
fldsgn / potentials / sspot / NatbiasSecondaryStructureEnergy.hhscoring / methods / EnergyMethod.fwd.hh
fldsgn / potentials / sspot / NatbiasSecondaryStructureEnergy.hhpose / Pose.fwd.hh
fldsgn / potentials / sspot / NatbiasSecondaryStructureEnergy.hhscoring / ScoreFunction.fwd.hh
fldsgn / potentials / sspot / NatbiasSecondaryStructureEnergy.hhscoring / methods / WholeStructureEnergy.hh
fldsgn / potentials / sspot / NatbiasSecondaryStructureEnergyCreator.hhscoring / methods / EnergyMethodCreator.hh
fldsgn / potentials / sspot / NatbiasSecondaryStructureEnergyCreator.hhscoring / methods / EnergyMethodOptions.fwd.hh
fldsgn / potentials / sspot / NatbiasSecondaryStructureEnergyCreator.hhscoring / ScoreType.hh
fldsgn / potentials / sspot / NatbiasSheetPotential.ccpose / Pose.hh
fldsgn / potentials / sspot / NatbiasSheetPotential.hhpose / Pose.fwd.hh
fldsgn / potentials / sspot / NatbiasSheetPotential.hhtypes.hh
fldsgn / potentials / sspot / NatbiasStrandPairPotential.ccscoring / Energies.hh
fldsgn / potentials / sspot / NatbiasStrandPairPotential.ccscoring / EnergyGraph.hh
fldsgn / potentials / sspot / NatbiasStrandPairPotential.cckinematics / Jump.hh
fldsgn / potentials / sspot / NatbiasStrandPairPotential.ccpose / Pose.hh
fldsgn / potentials / sspot / NatbiasStrandPairPotential.ccconformation / Residue.hh
fldsgn / potentials / sspot / NatbiasStrandPairPotential.ccscoring / symmetry / SymmetricEnergies.fwd.hh
fldsgn / potentials / sspot / NatbiasStrandPairPotential.ccpose / symmetry / util.hh
fldsgn / potentials / sspot / NatbiasStrandPairPotential.hhpose / Pose.fwd.hh
fldsgn / potentials / sspot / NatbiasStrandPairPotential.hhtypes.hh
simple_filters / NativeEvaluatorCreator.ccimport_pose / import_pose.hh
simple_filters / NativeEvaluatorCreator.ccpose / Pose.hh
simple_filters / NativeEvaluatorCreator.ccchemical / ResidueType.hh
simple_filters / NativeEvaluatorCreator.ccscoring / ScoreFunction.hh
simple_filters / NativeEvaluatorCreator.ccio / silent / silent.fwd.hh
simple_filters / NativeEvaluatorCreator.ccio / silent / SilentStruct.hh
simple_filters / NativeEvaluatorCreator.hhtypes.hh
fldsgn / NcontactsCalculator.ccconformation / Atom.hh
fldsgn / NcontactsCalculator.ccchemical / AtomType.hh
fldsgn / NcontactsCalculator.ccpose / Pose.hh
fldsgn / NcontactsCalculator.ccconformation / Residue.hh
fldsgn / NcontactsCalculator.hhconformation / Atom.fwd.hh
fldsgn / NcontactsCalculator.hhpose / Pose.fwd.hh
fldsgn / NcontactsCalculator.hhpose / metrics / PoseMetricCalculatorBase.hh
fldsgn / NcontactsCalculator.hhconformation / Residue.fwd.hh
fldsgn / NcontactsCalculator.hhtypes.hh
fldsgn / filters / NcontactsFilter.hhpose / Pose.fwd.hh
fldsgn / filters / NcontactsFilter.hhtypes.hh
toolbox / pose_metric_calculators / NeighborhoodByDistanceCalculator.ccconformation / find_neighbors.hh
toolbox / pose_metric_calculators / NeighborhoodByDistanceCalculator.ccgraph / Graph.hh
toolbox / pose_metric_calculators / NeighborhoodByDistanceCalculator.ccconformation / PointGraph.hh
toolbox / pose_metric_calculators / NeighborhoodByDistanceCalculator.ccconformation / PointGraphData.hh
toolbox / pose_metric_calculators / NeighborhoodByDistanceCalculator.ccpose / Pose.hh
toolbox / pose_metric_calculators / NeighborhoodByDistanceCalculator.ccgraph / UpperEdgeGraph.hh
toolbox / pose_metric_calculators / NeighborhoodByDistanceCalculator.hhpose / Pose.fwd.hh
toolbox / pose_metric_calculators / NeighborhoodByDistanceCalculator.hhpose / metrics / PoseMetricCalculatorBase.hh
toolbox / pose_metric_calculators / NeighborhoodByDistanceCalculator.hhtypes.hh
toolbox / pose_metric_calculators / NeighborsByDistanceCalculator.ccconformation / find_neighbors.hh
toolbox / pose_metric_calculators / NeighborsByDistanceCalculator.ccconformation / PointGraph.hh
toolbox / pose_metric_calculators / NeighborsByDistanceCalculator.ccconformation / PointGraphData.hh
toolbox / pose_metric_calculators / NeighborsByDistanceCalculator.ccpose / Pose.hh
toolbox / pose_metric_calculators / NeighborsByDistanceCalculator.ccgraph / UpperEdgeGraph.hh
toolbox / pose_metric_calculators / NeighborsByDistanceCalculator.hhpose / Pose.fwd.hh
toolbox / pose_metric_calculators / NeighborsByDistanceCalculator.hhpose / metrics / PoseMetricCalculatorBase.hh
toolbox / pose_metric_calculators / NeighborsByDistanceCalculator.hhtypes.hh
simple_filters / NeighborTypeFilter.ccchemical / ChemicalManager.fwd.hh
simple_filters / NeighborTypeFilter.ccconformation / Conformation.hh
simple_filters / NeighborTypeFilter.ccpose / Pose.hh
simple_filters / NeighborTypeFilter.ccconformation / Residue.hh
simple_filters / NeighborTypeFilter.ccpose / selection.hh
simple_filters / NeighborTypeFilter.hhpose / Pose.fwd.hh
simple_filters / NeighborTypeFilter.hhtypes.hh
optimize_weights / NestedEnergyTermOptEData.ccscoring / ScoreType.hh
optimize_weights / NestedEnergyTermOptEData.ccscoring / ScoreTypeManager.hh
optimize_weights / NestedEnergyTermOptEData.hhchemical / AA.hh
optimize_weights / NestedEnergyTermOptEData.hhscoring / EnergyMap.hh
optimize_weights / NestedEnergyTermOptEData.hhscoring / ScoreType.hh
optimize_weights / NestedEnergyTermOptEData.hhoptimization / types.hh
optimize_weights / NestedEnergyTermOptEData.hhtypes.hh
simple_filters / NMerPSSMEnergyFilter.ccchemical / AtomType.hh
simple_filters / NMerPSSMEnergyFilter.ccchemical / ChemicalManager.fwd.hh
simple_filters / NMerPSSMEnergyFilter.ccconformation / Conformation.hh
simple_filters / NMerPSSMEnergyFilter.ccscoring / Energies.hh
simple_filters / NMerPSSMEnergyFilter.ccscoring / EnergyGraph.hh
simple_filters / NMerPSSMEnergyFilter.ccscoring / methods / NMerPSSMEnergy.hh
simple_filters / NMerPSSMEnergyFilter.ccpose / Pose.hh
simple_filters / NMerPSSMEnergyFilter.ccscoring / ScoreFunction.hh
simple_filters / NMerPSSMEnergyFilter.ccscoring / ScoreFunctionFactory.hh
simple_filters / NMerPSSMEnergyFilter.ccscoring / ScoreType.hh
simple_filters / NMerPSSMEnergyFilter.ccscoring / ScoreTypeManager.hh
simple_filters / NMerPSSMEnergyFilter.ccpose / selection.hh
simple_filters / NMerPSSMEnergyFilter.ccutil / SwitchResidueTypeSet.hh
simple_filters / NMerPSSMEnergyFilter.hhscoring / methods / NMerPSSMEnergy.hh
simple_filters / NMerPSSMEnergyFilter.hhpose / Pose.fwd.hh
simple_filters / NMerPSSMEnergyFilter.hhscoring / ScoreFunction.hh
simple_filters / NMerPSSMEnergyFilter.hhtypes.hh
noesy_assign / NoesyModule.ccscoring / constraints / AmbiguousNMRDistanceConstraint.hh
noesy_assign / NoesyModule.ccscoring / constraints / BoundConstraint.hh
noesy_assign / NoesyModule.ccchemical / ChemicalManager.fwd.hh
noesy_assign / NoesyModule.ccscoring / constraints / ConstraintIO.hh
noesy_assign / NoesyModule.ccscoring / constraints / ConstraintSet.hh
noesy_assign / NoesyModule.ccpose / Pose.hh
noesy_assign / NoesyModule.ccio / silent / SilentFileData.hh
noesy_assign / NoesyModule.ccutil / SwitchResidueTypeSet.hh
noesy_assign / NoesyModule.hhpose / Pose.fwd.hh
noesy_assign / NoesyModule.hhtypes.hh
noesy_assign / NoesyModule.impl.hhtypes.hh
toolbox / pose_metric_calculators / NonlocalContactsCalculator.ccscoring / Energies.hh
toolbox / pose_metric_calculators / NonlocalContactsCalculator.ccscoring / EnergyGraph.hh
toolbox / pose_metric_calculators / NonlocalContactsCalculator.ccscoring / EnergyMap.hh
toolbox / pose_metric_calculators / NonlocalContactsCalculator.ccgraph / Graph.hh
toolbox / pose_metric_calculators / NonlocalContactsCalculator.ccpose / Pose.hh
toolbox / pose_metric_calculators / NonlocalContactsCalculator.ccchemical / ResidueType.hh
toolbox / pose_metric_calculators / NonlocalContactsCalculator.hhgraph / Graph.fwd.hh
toolbox / pose_metric_calculators / NonlocalContactsCalculator.hhpose / Pose.fwd.hh
toolbox / pose_metric_calculators / NonlocalContactsCalculator.hhpose / metrics / PoseMetricCalculatorBase.hh
toolbox / pose_metric_calculators / NonlocalContactsCalculator.hhtypes.hh
frag_picker / nonlocal / NonlocalFrags.ccconformation / Conformation.hh
frag_picker / nonlocal / NonlocalFrags.ccscoring / Energies.hh
frag_picker / nonlocal / NonlocalFrags.cckinematics / FoldTree.hh
frag_picker / nonlocal / NonlocalFrags.cckinematics / MoveMap.hh
frag_picker / nonlocal / NonlocalFrags.ccpose / PDBInfo.hh
frag_picker / nonlocal / NonlocalFrags.ccpose / Pose.hh
frag_picker / nonlocal / NonlocalFrags.ccconformation / Residue.hh
frag_picker / nonlocal / NonlocalFrags.ccscoring / rms_util.hh
frag_picker / nonlocal / NonlocalFrags.ccscoring / ScoreFunction.hh
frag_picker / nonlocal / NonlocalFrags.ccscoring / ScoreFunctionFactory.hh
frag_picker / nonlocal / NonlocalFrags.ccpose / util.hh
frag_picker / nonlocal / NonlocalFrags.hhpose / Pose.fwd.hh
frag_picker / nonlocal / NonlocalPair.hhtypes.hh
simple_filters / NonSequentialNeighborsFilter.ccconformation / Conformation.hh
simple_filters / NonSequentialNeighborsFilter.ccpose / Pose.hh
simple_filters / NonSequentialNeighborsFilter.hhpose / Pose.fwd.hh
simple_filters / NonSequentialNeighborsFilter.hhtypes.hh
jd2 / NoOutputJobOutputter.hhpose / Pose.fwd.hh
jd2 / archive / NormalizedEvaluatedArchive.ccscoring / ScoreFunction.hh
jd2 / archive / NormalizedEvaluatedArchive.hhscoring / constraints / ConstraintSet.fwd.hh
jd2 / archive / NormalizedEvaluatedArchive.hhpose / Pose.fwd.hh
jd2 / archive / NormalizedEvaluatedArchive.hhscoring / ResidualDipolarCoupling.fwd.hh
jd2 / archive / NormalizedEvaluatedArchive.hhio / silent / silent.fwd.hh
jd2 / archive / NormalizedEvaluatedArchive.hhtypes.hh
jobdist / not_universal_main.ccchemical / ChemicalManager.hh
jobdist / not_universal_main.ccimport_pose / import_pose.hh
jobdist / not_universal_main.ccimport_pose / pose_stream / MetaPoseInputStream.hh
jobdist / not_universal_main.ccpose / Pose.hh
jobdist / not_universal_main.ccio / pdb / pose_io.hh
jobdist / not_universal_main.ccscoring / rms_util.hh
jobdist / not_universal_main.ccscoring / ScoreFunction.hh
jobdist / not_universal_main.ccscoring / ScoreFunctionFactory.hh
jobdist / not_universal_main.ccio / silent / silent.fwd.hh
jobdist / not_universal_main.ccio / silent / SilentFileData.hh
jobdist / not_universal_main.ccio / silent / SilentStruct.hh
jobdist / not_universal_main.ccio / silent / SilentStructFactory.hh
jobdist / not_universal_main.cctypes.hh
jobdist / not_universal_main.ccpose / util.hh
jobdist / not_universal_main.ccimport_pose / pose_stream / util.hh
jobdist / not_universal_main.hhpose / Pose.fwd.hh
forge / constraints / NtoC_RCG.ccscoring / constraints / AtomPairConstraint.hh
forge / constraints / NtoC_RCG.ccscoring / constraints / BoundConstraint.hh
forge / constraints / NtoC_RCG.ccscoring / constraints / Constraint.hh
forge / constraints / NtoC_RCG.ccpose / Pose.hh
forge / constraints / NtoC_RCG.ccchemical / ResidueType.hh
forge / constraints / NtoC_RCG.ccscoring / constraints / ScalarWeightedFunc.hh
forge / constraints / NtoC_RCG.ccid / SequenceMapping.hh
forge / constraints / NtoC_RCG.hhpose / Pose.fwd.hh
forge / constraints / NtoC_RCG.hhtypes.hh
protein_interface_design / movers / NullDesignMover.hhpose / Pose.fwd.hh
moves / NullMover.hhpose / Pose.fwd.hh
toolbox / pose_metric_calculators / NumberHBondsCalculator.ccchemical / AtomType.hh
toolbox / pose_metric_calculators / NumberHBondsCalculator.ccscoring / Energies.hh
toolbox / pose_metric_calculators / NumberHBondsCalculator.ccscoring / EnergyGraph.hh
toolbox / pose_metric_calculators / NumberHBondsCalculator.ccscoring / EnergyMap.hh
toolbox / pose_metric_calculators / NumberHBondsCalculator.ccscoring / hbonds / HBondDatabase.hh
toolbox / pose_metric_calculators / NumberHBondsCalculator.ccscoring / hbonds / hbonds.hh
toolbox / pose_metric_calculators / NumberHBondsCalculator.ccscoring / hbonds / HBondSet.hh
toolbox / pose_metric_calculators / NumberHBondsCalculator.ccpose / Pose.hh
toolbox / pose_metric_calculators / NumberHBondsCalculator.ccconformation / Residue.hh
toolbox / pose_metric_calculators / NumberHBondsCalculator.ccscoring / ScoreType.hh
toolbox / pose_metric_calculators / NumberHBondsCalculator.ccscoring / TenANeighborGraph.hh
toolbox / pose_metric_calculators / NumberHBondsCalculator.hhid / AtomID_Map.hh
toolbox / pose_metric_calculators / NumberHBondsCalculator.hhscoring / EnergyMap.fwd.hh
toolbox / pose_metric_calculators / NumberHBondsCalculator.hhscoring / hbonds / HBondDatabase.hh
toolbox / pose_metric_calculators / NumberHBondsCalculator.hhscoring / hbonds / HBondSet.fwd.hh
toolbox / pose_metric_calculators / NumberHBondsCalculator.hhpose / Pose.fwd.hh
toolbox / pose_metric_calculators / NumberHBondsCalculator.hhpose / metrics / PoseMetricCalculatorBase.hh
toolbox / pose_metric_calculators / NumberHBondsCalculator.hhtypes.hh
simple_moves / O2M_MutateMover.ccpack / task / PackerTask.hh
simple_moves / O2M_MutateMover.ccpose / Pose.hh
simple_moves / O2M_MutateMover.ccconformation / Residue.hh
simple_moves / O2M_MutateMover.ccconformation / ResidueFactory.hh
simple_moves / O2M_MutateMover.ccchemical / ResidueType.hh
simple_moves / O2M_MutateMover.ccscoring / ScoreFunction.hh
simple_moves / O2M_MutateMover.ccpack / task / TaskFactory.hh
simple_moves / O2M_MutateMover.ccconformation / util.hh
simple_moves / O2M_MutateMover.ccpose / util.hh
simple_moves / O2M_MutateMover.hhpack / task / PackerTask.fwd.hh
simple_moves / O2M_MutateMover.hhscoring / ScoreFunction.hh
simple_moves / O2M_MutateMover.hhpack / task / TaskFactory.fwd.hh
match / OccupiedSpaceHash.hhtypes.hh
simple_moves / oop / OopMover.ccid / AtomID.hh
simple_moves / oop / OopMover.ccscoring / constraints / AtomPairConstraint.hh
simple_moves / oop / OopMover.ccchemical / ChemicalManager.hh
simple_moves / oop / OopMover.ccconformation / Conformation.hh
simple_moves / oop / OopMover.ccscoring / constraints / ConstraintSet.hh
simple_moves / oop / OopMover.ccpose / Pose.hh
simple_moves / oop / OopMover.ccconformation / Residue.hh
simple_moves / oop / OopMover.ccchemical / ResidueType.hh
simple_moves / oop / OopMover.ccchemical / ResidueTypeSet.hh
simple_moves / oop / OopMover.cctypes.hh
simple_moves / oop / OopMover.ccconformation / util.hh
simple_moves / oop / OopMover.ccchemical / VariantType.hh
simple_moves / oop / OopMover.hhpose / Pose.fwd.hh
simple_moves / oop / OopMover.hhtypes.hh
simple_moves / oop / OopPatcher.ccid / AtomID.hh
simple_moves / oop / OopPatcher.ccscoring / constraints / AtomPairConstraint.hh
simple_moves / oop / OopPatcher.ccchemical / ChemicalManager.hh
simple_moves / oop / OopPatcher.ccconformation / Conformation.hh
simple_moves / oop / OopPatcher.ccscoring / constraints / ConstraintSet.fwd.hh
simple_moves / oop / OopPatcher.ccscoring / constraints / ConstraintSet.hh
simple_moves / oop / OopPatcher.ccscoring / constraints / HarmonicFunc.hh
simple_moves / oop / OopPatcher.ccchemical / Patch.hh
simple_moves / oop / OopPatcher.ccpose / Pose.hh
simple_moves / oop / OopPatcher.ccconformation / Residue.hh
simple_moves / oop / OopPatcher.ccchemical / ResidueType.hh
simple_moves / oop / OopPatcher.ccchemical / ResidueTypeSet.hh
simple_moves / oop / OopPatcher.cctypes.hh
simple_moves / oop / OopPatcher.ccconformation / util.hh
simple_moves / oop / OopPatcher.ccchemical / VariantType.hh
simple_moves / oop / OopPatcher.hhpose / Pose.fwd.hh
simple_moves / oop / OopPatcher.hhtypes.hh
simple_moves / oop / OopPuckMover.ccid / AtomID.hh
simple_moves / oop / OopPuckMover.ccscoring / constraints / AtomPairConstraint.hh
simple_moves / oop / OopPuckMover.ccchemical / ChemicalManager.hh
simple_moves / oop / OopPuckMover.ccconformation / Conformation.hh
simple_moves / oop / OopPuckMover.ccscoring / constraints / ConstraintSet.hh
simple_moves / oop / OopPuckMover.ccpose / Pose.hh
simple_moves / oop / OopPuckMover.ccconformation / Residue.hh
simple_moves / oop / OopPuckMover.ccchemical / ResidueType.hh
simple_moves / oop / OopPuckMover.ccchemical / ResidueTypeSet.hh
simple_moves / oop / OopPuckMover.cctypes.hh
simple_moves / oop / OopPuckMover.ccconformation / util.hh
simple_moves / oop / OopPuckMover.ccchemical / VariantType.hh
simple_moves / oop / OopPuckMover.hhpose / Pose.fwd.hh
simple_moves / oop / OopPuckMover.hhtypes.hh
simple_moves / oop / OopRandomPuckMover.ccid / AtomID.hh
simple_moves / oop / OopRandomPuckMover.ccscoring / constraints / AtomPairConstraint.hh
simple_moves / oop / OopRandomPuckMover.ccchemical / ChemicalManager.hh
simple_moves / oop / OopRandomPuckMover.ccconformation / Conformation.hh
simple_moves / oop / OopRandomPuckMover.ccscoring / constraints / ConstraintSet.hh
simple_moves / oop / OopRandomPuckMover.ccpose / Pose.hh
simple_moves / oop / OopRandomPuckMover.ccconformation / Residue.hh
simple_moves / oop / OopRandomPuckMover.ccchemical / ResidueConnection.hh
simple_moves / oop / OopRandomPuckMover.ccchemical / ResidueType.hh
simple_moves / oop / OopRandomPuckMover.ccchemical / ResidueTypeSet.hh
simple_moves / oop / OopRandomPuckMover.cctypes.hh
simple_moves / oop / OopRandomPuckMover.ccconformation / util.hh
simple_moves / oop / OopRandomPuckMover.ccchemical / VariantType.hh
simple_moves / oop / OopRandomPuckMover.hhpose / Pose.fwd.hh
simple_moves / oop / OopRandomPuckMover.hhtypes.hh
simple_moves / oop / OopRandomSmallMover.ccid / AtomID.hh
simple_moves / oop / OopRandomSmallMover.ccscoring / constraints / AtomPairConstraint.hh
simple_moves / oop / OopRandomSmallMover.ccchemical / ChemicalManager.hh
simple_moves / oop / OopRandomSmallMover.ccconformation / Conformation.hh
simple_moves / oop / OopRandomSmallMover.ccscoring / constraints / ConstraintSet.hh
simple_moves / oop / OopRandomSmallMover.ccpose / Pose.hh
simple_moves / oop / OopRandomSmallMover.ccconformation / Residue.hh
simple_moves / oop / OopRandomSmallMover.ccchemical / ResidueType.hh
simple_moves / oop / OopRandomSmallMover.ccchemical / ResidueTypeSet.hh
simple_moves / oop / OopRandomSmallMover.cctypes.hh
simple_moves / oop / OopRandomSmallMover.ccconformation / util.hh
simple_moves / oop / OopRandomSmallMover.ccchemical / VariantType.hh
simple_moves / oop / OopRandomSmallMover.hhpose / Pose.fwd.hh
simple_moves / oop / OopRandomSmallMover.hhtypes.hh
simple_filters / OperatorFilter.ccpose / Pose.hh
simple_filters / OperatorFilter.hhpose / Pose.fwd.hh
simple_filters / OperatorFilter.hhtypes.hh
optimize_weights / OptEData.ccscoring / ScoreType.hh
optimize_weights / OptEData.ccscoring / ScoreTypeManager.hh
optimize_weights / OptEData.hhchemical / AA.hh
optimize_weights / OptEData.hhscoring / EnergyMap.hh
optimize_weights / OptEData.hhscoring / ScoreType.hh
optimize_weights / OptEData.hhoptimization / types.hh
optimize_weights / OptEData.hhtypes.hh
optimize_weights / OptEMultifunc.ccoptimization / Multifunc.hh
optimize_weights / OptEMultifunc.ccscoring / ScoreType.hh
optimize_weights / OptEMultifunc.ccscoring / ScoreTypeManager.hh
optimize_weights / OptEMultifunc.cctypes.hh
optimize_weights / OptEMultifunc.ccoptimization / types.hh
optimize_weights / OptEMultifunc.hhscoring / EnergyMap.hh
optimize_weights / OptEMultifunc.hhoptimization / Multifunc.hh
optimize_weights / OptEMultifunc.hhscoring / ScoreType.hh
optimize_weights / OptEMultifunc.hhoptimization / types.hh
features / OrbitalsFeatures.ccchemical / AtomType.hh
features / OrbitalsFeatures.ccscoring / orbitals / OrbitalsLookup.hh
features / OrbitalsFeatures.ccchemical / orbitals / OrbitalType.hh
features / OrbitalsFeatures.ccpose / Pose.hh
features / OrbitalsFeatures.ccconformation / Residue.hh
features / OrbitalsFeatures.ccchemical / ResidueType.fwd.hh
features / OrbitalsFeatures.cctypes.hh
features / OrbitalsFeatures.hhpose / Pose.fwd.hh
features / OrbitalsFeatures.hhconformation / Residue.hh
features / OrbitalsFeatures.hhtypes.hh
features / OrbitalsFeaturesCreator.hhtypes.hh
match / upstream / OriginalScaffoldBuildPoint.ccconformation / Residue.hh
match / upstream / OriginalScaffoldBuildPoint.ccpack / dunbrack / SingleResidueDunbrackLibrary.hh
match / upstream / OriginalScaffoldBuildPoint.hhpose / Pose.fwd.hh
match / upstream / OriginalScaffoldBuildPoint.hhconformation / Residue.fwd.hh
match / upstream / OriginalScaffoldBuildPoint.hhtypes.hh
flexpack / interaction_graph / OTFFlexbbInteractionGraph.ccchemical / AA.hh
flexpack / interaction_graph / OTFFlexbbInteractionGraph.ccscoring / Energies.hh
flexpack / interaction_graph / OTFFlexbbInteractionGraph.ccscoring / EnergyGraph.hh
flexpack / interaction_graph / OTFFlexbbInteractionGraph.ccgraph / Graph.hh
flexpack / interaction_graph / OTFFlexbbInteractionGraph.ccscoring / methods / LongRangeTwoBodyEnergy.hh
flexpack / interaction_graph / OTFFlexbbInteractionGraph.ccpose / Pose.hh
flexpack / interaction_graph / OTFFlexbbInteractionGraph.ccconformation / Residue.hh
flexpack / interaction_graph / OTFFlexbbInteractionGraph.ccpack / rotamer_set / RotamerSets.hh
flexpack / interaction_graph / OTFFlexbbInteractionGraph.ccscoring / ScoreFunction.hh
flexpack / interaction_graph / OTFFlexbbInteractionGraph.ccscoring / ScoreFunctionInfo.hh
flexpack / interaction_graph / OTFFlexbbInteractionGraph.hhpose / Pose.fwd.hh
flexpack / interaction_graph / OTFFlexbbInteractionGraph.hhconformation / Residue.fwd.hh
flexpack / interaction_graph / OTFFlexbbInteractionGraph.hhscoring / ScoreFunction.fwd.hh
flexpack / interaction_graph / OTFFlexbbInteractionGraph.hhtypes.hh
flexpack / OtherContextScoreFunction.ccpose / Pose.hh
flexpack / OtherContextScoreFunction.hhpose / Pose.fwd.hh
flexpack / OtherContextScoreFunction.hhscoring / ScoreFunction.hh
moves / OutputMovers.ccscoring / Energies.hh
moves / OutputMovers.ccpose / Pose.hh
moves / OutputMovers.ccio / pdb / pose_io.hh
moves / OutputMovers.ccscoring / ScoreFunction.hh
moves / OutputMovers.hhpose / Pose.fwd.hh
outputter / Outputter.hhio / serialization / Pipe.fwd.hh
outputter / Outputter.hhio / serialization / PipeMap.fwd.hh
outputter / Outputter.hhpose / Pose.hh
pack_daemon / PackDaemon.ccpose / annotated_sequence.hh
pack_daemon / PackDaemon.ccchemical / ChemicalManager.fwd.hh
pack_daemon / PackDaemon.ccpack / interaction_graph / DensePDInteractionGraph.hh
pack_daemon / PackDaemon.ccpack / interaction_graph / DoubleDensePDInteractionGraph.hh
pack_daemon / PackDaemon.ccscoring / Energies.hh
pack_daemon / PackDaemon.ccscoring / EnergyGraph.hh
pack_daemon / PackDaemon.ccpack / annealer / FASTERAnnealer.hh
pack_daemon / PackDaemon.ccpack / interaction_graph / FASTERInteractionGraph.hh
pack_daemon / PackDaemon.ccpack / interaction_graph / FixedBBInteractionGraph.hh
pack_daemon / PackDaemon.ccimport_pose / import_pose.hh
pack_daemon / PackDaemon.ccpack / interaction_graph / InteractionGraphBase.hh
pack_daemon / PackDaemon.ccpack / pack_rotamers.hh
pack_daemon / PackDaemon.ccpack / task / PackerTask.hh
pack_daemon / PackDaemon.ccpose / Pose.hh
pack_daemon / PackDaemon.ccpack / task / ResfileReader.hh
pack_daemon / PackDaemon.ccconformation / Residue.hh
pack_daemon / PackDaemon.ccpack / rotamer_set / RotamerSet.hh
pack_daemon / PackDaemon.ccpack / rotamer_set / RotamerSets.hh
pack_daemon / PackDaemon.ccpack / rotamer_set / RotamerSubsets.hh
pack_daemon / PackDaemon.ccscoring / ScoreFunction.hh
pack_daemon / PackDaemon.ccpack / task / TaskFactory.hh
pack_daemon / PackDaemon.hhpack / interaction_graph / DensePDInteractionGraph.fwd.hh
pack_daemon / PackDaemon.hhpack / interaction_graph / DoubleDensePDInteractionGraph.fwd.hh
pack_daemon / PackDaemon.hhpack / interaction_graph / FASTERInteractionGraph.fwd.hh
pack_daemon / PackDaemon.hhpack / interaction_graph / FixedBBInteractionGraph.fwd.hh
pack_daemon / PackDaemon.hhpack / interaction_graph / InteractionGraphBase.fwd.hh
pack_daemon / PackDaemon.hhpack / task / PackerTask.fwd.hh
pack_daemon / PackDaemon.hhpose / Pose.fwd.hh
pack_daemon / PackDaemon.hhpack / task / ResfileReader.fwd.hh
pack_daemon / PackDaemon.hhpack / rotamer_set / RotamerSets.fwd.hh
pack_daemon / PackDaemon.hhpack / rotamer_set / RotamerSubsets.fwd.hh
pack_daemon / PackDaemon.hhscoring / ScoreFunction.fwd.hh
pack_daemon / PackDaemon.hhpack / task / TaskFactory.fwd.hh
pack_daemon / PackDaemon.hhtypes.hh
simple_filters / PackerNeighborGraphFilter.ccgraph / Graph.hh
simple_filters / PackerNeighborGraphFilter.ccpack / packer_neighbors.hh
simple_filters / PackerNeighborGraphFilter.cctypes.hh
simple_filters / PackerNeighborGraphFilter.hhpack / task / PackerTask.hh
simple_filters / PackerNeighborGraphFilter.hhscoring / ScoreFunction.hh
simple_filters / PackerNeighborGraphFilter.hhtypes.hh
multistate_design / PackingState.ccpack / interaction_graph / InteractionGraphBase.hh
multistate_design / PackingState.ccpack / pack_rotamers.hh
multistate_design / PackingState.ccpack / task / PackerTask.hh
multistate_design / PackingState.ccpack / rotamer_set / RotamerSets.hh
multistate_design / PackingState.hhpack / interaction_graph / InteractionGraphBase.fwd.hh
multistate_design / PackingState.hhpack / task / PackerTask.fwd.hh
multistate_design / PackingState.hhpose / Pose.fwd.hh
multistate_design / PackingState.hhpack / rotamer_set / RotamerSets.fwd.hh
multistate_design / PackingState.hhscoring / ScoreFunction.fwd.hh
multistate_design / PackingState.hhtypes.hh
simple_moves / PackRotamersMover.ccpack / interaction_graph / InteractionGraphBase.hh
simple_moves / PackRotamersMover.ccpack / pack_rotamers.hh
simple_moves / PackRotamersMover.ccpack / task / PackerTask.hh
simple_moves / PackRotamersMover.ccpose / PDBInfo.hh
simple_moves / PackRotamersMover.ccpose / Pose.hh
simple_moves / PackRotamersMover.ccchemical / ResidueType.hh
simple_moves / PackRotamersMover.ccpack / rotamer_set / RotamerSets.hh
simple_moves / PackRotamersMover.ccscoring / ScoreFunction.hh
simple_moves / PackRotamersMover.ccscoring / ScoreFunctionFactory.hh
simple_moves / PackRotamersMover.ccpack / task / TaskFactory.hh
simple_moves / PackRotamersMover.hhpack / interaction_graph / InteractionGraphBase.fwd.hh
simple_moves / PackRotamersMover.hhpack / task / PackerTask.fwd.hh
simple_moves / PackRotamersMover.hhpose / Pose.fwd.hh
simple_moves / PackRotamersMover.hhpack / rotamer_set / RotamerSets.fwd.hh
simple_moves / PackRotamersMover.hhscoring / ScoreFunction.fwd.hh
simple_moves / PackRotamersMover.hhpack / task / TaskFactory.fwd.hh
simple_moves / PackRotamersMover.hhtypes.hh
simple_moves / PackRotamersMoverLazy.ccpack / task / PackerTask.hh
simple_moves / PackRotamersMoverLazy.ccpose / Pose.hh
simple_moves / PackRotamersMoverLazy.ccscoring / ScoreFunction.hh
simple_moves / PackRotamersMoverLazy.ccpack / task / operation / TaskOperation.fwd.hh
simple_moves / PackRotamersMoverLazy.hhpack / task / PackerTask.fwd.hh
simple_moves / PackRotamersMoverLazy.hhpose / Pose.fwd.hh
simple_moves / PackRotamersMoverLazy.hhscoring / ScoreFunction.fwd.hh
simple_moves / PackRotamersMoverLazy.hhpack / task / TaskFactory.fwd.hh
simple_moves / PackRotamersMoverLazy.hhtypes.hh
enzdes / PackRotamersMoverPartGreedy.ccscoring / Energies.hh
enzdes / PackRotamersMoverPartGreedy.ccscoring / EnergyGraph.hh
enzdes / PackRotamersMoverPartGreedy.ccpack / task / IGEdgeReweightContainer.hh
enzdes / PackRotamersMoverPartGreedy.cckinematics / MoveMap.hh
enzdes / PackRotamersMoverPartGreedy.ccpack / task / PackerTask.hh
enzdes / PackRotamersMoverPartGreedy.ccpose / Pose.hh
enzdes / PackRotamersMoverPartGreedy.ccconformation / Residue.hh
enzdes / PackRotamersMoverPartGreedy.ccscoring / ScoreFunction.hh
enzdes / PackRotamersMoverPartGreedy.ccscoring / ScoreFunctionFactory.hh
enzdes / PackRotamersMoverPartGreedy.ccpose / selection.hh
enzdes / PackRotamersMoverPartGreedy.ccpack / task / TaskFactory.hh
enzdes / PackRotamersMoverPartGreedy.ccpack / task / operation / TaskOperations.hh
enzdes / PackRotamersMoverPartGreedy.hhpack / task / PackerTask.fwd.hh
enzdes / PackRotamersMoverPartGreedy.hhpose / Pose.fwd.hh
enzdes / PackRotamersMoverPartGreedy.hhscoring / ScoreFunction.fwd.hh
enzdes / PackRotamersMoverPartGreedy.hhpack / task / TaskFactory.fwd.hh
enzdes / PackRotamersMoverPartGreedy.hhtypes.hh
toolbox / pose_metric_calculators / PackstatCalculator.ccscoring / packstat / compute_sasa.hh
toolbox / pose_metric_calculators / PackstatCalculator.ccpose / Pose.hh
toolbox / pose_metric_calculators / PackstatCalculator.ccchemical / ResidueType.hh
toolbox / pose_metric_calculators / PackstatCalculator.hhpose / Pose.fwd.hh
toolbox / pose_metric_calculators / PackstatCalculator.hhpose / metrics / PoseMetricCalculatorBase.hh
toolbox / pose_metric_calculators / PackstatCalculator.hhtypes.hh
simple_filters / PackStatFilter.ccscoring / packstat / compute_sasa.hh
simple_filters / PackStatFilter.ccconformation / Conformation.hh
simple_filters / PackStatFilter.cctypes.hh
simple_filters / PackStatFilter.ccpose / util.hh
simple_filters / PackStatFilter.hhpose / Pose.fwd.hh
analysis / PackStatMover.ccscoring / packstat / compute_sasa.hh
analysis / PackStatMover.ccpose / PDBInfo.hh
analysis / PackStatMover.ccpose / Pose.hh
analysis / PackStatMover.cctypes.hh
analysis / PackStatMover.hhpose / Pose.fwd.hh
analysis / PackStatMover.hhtypes.hh
features / PairFeatures.ccconformation / Conformation.hh
features / PairFeatures.ccscoring / Energies.hh
features / PairFeatures.ccgraph / Graph.hh
features / PairFeatures.ccpose / Pose.hh
features / PairFeatures.ccconformation / Residue.hh
features / PairFeatures.ccchemical / ResidueType.fwd.hh
features / PairFeatures.ccscoring / TenANeighborGraph.hh
features / PairFeatures.cctypes.hh
features / PairFeatures.hhpose / Pose.fwd.hh
features / PairFeatures.hhtypes.hh
features / PairFeaturesCreator.hhtypes.hh
jumping / PairingLibrary.ccfragment / BBTorsionSRFD.hh
jumping / PairingLibrary.ccconformation / Conformation.hh
jumping / PairingLibrary.ccfragment / FragData.hh
jumping / PairingLibrary.ccfragment / FragSet.hh
jumping / PairingLibrary.cckinematics / Jump.hh
jumping / PairingLibrary.ccfragment / JumpingFrame.hh
jumping / PairingLibrary.ccfragment / JumpSRFD.hh
jumping / PairingLibrary.cckinematics / MoveMap.hh
jumping / PairingLibrary.ccid / NamedStubID.hh
jumping / PairingLibrary.ccscoring / dssp / PairingsList.hh
jumping / PairingLibrary.ccpose / Pose.hh
jumping / PairingLibrary.ccfragment / SingleResidueFragData.fwd.hh
jumping / PairingLibrary.cckinematics / Stub.hh
jumping / PairingLibrary.cctypes.hh
jumping / PairingLibrary.ccpose / util.hh
jumping / PairingLibrary.hhfragment / FragData.fwd.hh
jumping / PairingLibrary.hhfragment / FragSet.fwd.hh
jumping / PairingLibrary.hhkinematics / MoveMap.fwd.hh
jumping / PairingLibrary.hhscoring / dssp / PairingsList.fwd.hh
jumping / PairingLibrary.hhpose / Pose.fwd.hh
jumping / PairingLibrary.hhkinematics / RT.hh
jumping / PairingLibrary.hhtypes.hh
abinitio / PairingStatistics.ccfragment / FragSet.fwd.hh
abinitio / PairingStatistics.ccid / SequenceMapping.hh
abinitio / PairingStatistics.cctypes.hh
abinitio / PairingStatistics.hhscoring / dssp / PairingsList.fwd.hh
abinitio / PairingStatistics.hhpose / Pose.fwd.hh
abinitio / PairingStatistics.hhscoring / dssp / StrandPairing.hh
abinitio / PairingStatistics.hhtypes.hh
simple_filters / PalesEvaluator.ccpose / Pose.hh
simple_filters / PalesEvaluator.ccio / silent / SilentStruct.hh
simple_filters / PalesEvaluator.hhpose / Pose.fwd.hh
simple_filters / PalesEvaluatorCreator.ccio / silent / silent.fwd.hh
simple_filters / PalesEvaluatorCreator.ccio / silent / SilentStruct.hh
simple_filters / PalesEvaluatorCreator.hhtypes.hh
fldsgn / filters / ParallelBetaPairingPreferenceFilter.ccscoring / dssp / Dssp.hh
fldsgn / filters / ParallelBetaPairingPreferenceFilter.ccpose / Pose.hh
fldsgn / filters / ParallelBetaPairingPreferenceFilter.cctypes.hh
fldsgn / filters / ParallelBetaPairingPreferenceFilter.hhchemical / AA.hh
fldsgn / filters / ParallelBetaPairingPreferenceFilter.hhpose / Pose.fwd.hh
canonical_sampling / ParallelTempering.ccscoring / ScoreFunction.hh
canonical_sampling / ParallelTempering.ccpack / task / TaskFactory.hh
canonical_sampling / ParallelTempering.ccpack / task / operation / TaskOperations.hh
canonical_sampling / ParallelTempering.cctypes.hh
canonical_sampling / ParallelTempering.hhpose / Pose.fwd.hh
canonical_sampling / ParallelTempering.hhtypes.hh
design_opt / ParetoOptMutationMover.ccconformation / Conformation.hh
design_opt / ParetoOptMutationMover.ccpack / pack_rotamers.hh
design_opt / ParetoOptMutationMover.ccpack / task / PackerTask.hh
design_opt / ParetoOptMutationMover.ccpose / PDBInfo.hh
design_opt / ParetoOptMutationMover.ccpose / Pose.hh
design_opt / ParetoOptMutationMover.ccconformation / Residue.hh
design_opt / ParetoOptMutationMover.ccchemical / ResidueType.fwd.hh
design_opt / ParetoOptMutationMover.ccchemical / ResidueType.hh
design_opt / ParetoOptMutationMover.ccscoring / ScoreFunction.hh
design_opt / ParetoOptMutationMover.ccpack / task / TaskFactory.hh
design_opt / ParetoOptMutationMover.ccpose / symmetry / util.hh
design_opt / ParetoOptMutationMover.hhpack / task / PackerTask.fwd.hh
design_opt / ParetoOptMutationMover.hhpose / Pose.hh
design_opt / ParetoOptMutationMover.hhscoring / ScoreFunction.fwd.hh
design_opt / ParetoOptMutationMover.hhpack / task / TaskFactory.fwd.hh
design_opt / ParetoOptMutationMover.hhtypes.hh
protein_interface_design / parse_filters.ccchemical / AA.hh
protein_interface_design / parse_filters.ccscoring / ScoreFunction.hh
protein_interface_design / parse_filters.ccscoring / ScoreType.hh
protein_interface_design / parse_filters.ccscoring / symmetry / SymmetricScoreFunction.hh
protein_interface_design / parse_filters.cctypes.hh
rosetta_scripts / ParsedProtocol.cckinematics / Jump.hh
rosetta_scripts / ParsedProtocol.ccpose / Pose.hh
rosetta_scripts / ParsedProtocol.ccscoring / ScoreFunction.hh
rosetta_scripts / ParsedProtocol.ccscoring / symmetry / SymmetricScoreFunction.hh
rosetta_scripts / ParsedProtocol.ccpose / symmetry / util.hh
rosetta_scripts / ParsedProtocol.hhpose / Pose.fwd.hh
rosetta_scripts / ParsedProtocol.hhscoring / ScoreFunction.fwd.hh
rosetta_scripts / ParsedProtocol.hhtypes.hh
jd2 / Parser.ccpose / Pose.hh
jd2 / Parser.hhpose / Pose.fwd.hh
protein_interface_design / ParserJobInputter.hhpose / Pose.fwd.hh
frag_picker / scores / PartialSecondarySimilarity.ccfragment / SecondaryStructure.hh
frag_picker / scores / PartialSecondarySimilarity.cctypes.hh
frag_picker / scores / PartialSecondarySimilarity.hhfragment / SecondaryStructure.hh
frag_picker / scores / PartialSecondarySimilarity.hhtypes.hh
comparative_modeling / PartialThreadingMover.ccconformation / Conformation.hh
comparative_modeling / PartialThreadingMover.ccimport_pose / import_pose.hh
comparative_modeling / PartialThreadingMover.ccpose / PDBInfo.hh
comparative_modeling / PartialThreadingMover.ccid / SequenceMapping.hh
comparative_modeling / PartialThreadingMover.cctypes.hh
comparative_modeling / PartialThreadingMover.ccsequence / util.hh
comparative_modeling / PartialThreadingMover.hhpose / Pose.hh
comparative_modeling / PartialThreadingMover.hhtypes.hh
multistate_design / PartitionAggregateFunction.cctypes.hh
multistate_design / PartitionAggregateFunction.hhtypes.hh
evaluation / PCA.ccid / AtomID.hh
evaluation / PCA.ccpose / Pose.hh
evaluation / PCA.ccchemical / ResidueType.hh
evaluation / PCA.hhid / AtomID.fwd.hh
evaluation / PCA.hhpose / Pose.fwd.hh
evaluation / PCA.hhtypes.hh
frag_picker / scores / PCS_FragDistance.hhtypes.hh
scoring / methods / pcs2 / PcsDataCenter.ccpose / Pose.hh
scoring / methods / pcs2 / PcsDataCenter.ccconformation / Residue.hh
scoring / methods / pcs2 / PcsDataCenter.hhpose / Pose.fwd.hh
scoring / methods / pcs2 / PcsDataCenter.hhtypes.hh
scoring / methods / pcs2 / PcsDataCenterManager.hhtypes.hh
scoring / methods / pcs2 / PcsDataCenterManagerSingleton.hhtypes.hh
scoring / methods / pcs2 / PcsDataLanthanide.hhtypes.hh
scoring / methods / pcs2 / PcsEnergy.ccpose / datacache / CacheableDataType.hh
scoring / methods / pcs2 / PcsEnergy.ccscoring / EnergyMap.hh
scoring / methods / pcs2 / PcsEnergy.ccoptimization / Minimizer.hh
scoring / methods / pcs2 / PcsEnergy.ccpose / Pose.hh
scoring / methods / pcs2 / PcsEnergy.ccconformation / Residue.hh
scoring / methods / pcs2 / PcsEnergy.hhoptimization / Minimizer.fwd.hh
scoring / methods / pcs2 / PcsEnergy.hhscoring / methods / WholeStructureEnergy.hh
topology_broker / PcsEnergyController.hhpose / Pose.fwd.hh
topology_broker / PcsEnergyController.hhscoring / ScoreFunction.fwd.hh
scoring / methods / pcs2 / PcsEnergyCreator.hhscoring / methods / EnergyMethodCreator.hh
scoring / methods / pcs2 / PcsEnergyParameter.hhtypes.hh
scoring / methods / pcs2 / PcsGridSearchParameter.hhtypes.hh
scoring / methods / pcs2 / PcsGridSearchParameterManager.hhtypes.hh
scoring / methods / pcs2 / PcsInputCenter.hhtypes.hh
scoring / methods / pcs2 / PcsInputCenterManager.hhtypes.hh
scoring / methods / pcs2 / PcsInputLine.hhtypes.hh
scoring / methods / pcs2 / PcsTensor.hhtypes.hh
sparta / PDB.ccpose / Pose.hh
sparta / PDB.hhpose / Pose.fwd.hh
features / PdbDataFeatures.ccpose / PDBInfo.hh
features / PdbDataFeatures.ccpose / Pose.hh
features / PdbDataFeatures.ccconformation / Residue.hh
features / PdbDataFeatures.hhpose / Pose.fwd.hh
features / PdbDataFeaturesCreator.hhtypes.hh
inputter / PDBInputter.ccchemical / ChemicalManager.hh
inputter / PDBInputter.ccimport_pose / import_pose.hh
inputter / PDBInputter.ccpose / Pose.hh
inputter / PDBInputter.ccpose / util.hh
inputter / PDBInputter.hhpose / Pose.fwd.hh
inputter / PDBInputter.hhtypes.hh
jd2 / PDBJobInputter.ccimport_pose / import_pose.hh
jd2 / PDBJobInputter.ccpose / Pose.hh
jd2 / PDBJobInputter.hhpose / Pose.fwd.hh
jd2 / PDBJobOutputter.ccio / pdb / file_data.hh
jd2 / PDBJobOutputter.ccio / pdb / pose_io.hh
jd2 / PDBJobOutputter.cctypes.hh
jd2 / PDBJobOutputter.hhpose / Pose.fwd.hh
dna / PDBOutput.ccchemical / AtomType.hh
dna / PDBOutput.ccscoring / Energies.hh
dna / PDBOutput.ccscoring / hbonds / hbonds.hh
dna / PDBOutput.ccscoring / hbonds / hbonds_geom.hh
dna / PDBOutput.ccscoring / hbonds / HBondSet.hh
dna / PDBOutput.ccpack / task / PackerTask.hh
dna / PDBOutput.ccpose / PDBInfo.hh
dna / PDBOutput.ccpose / Pose.hh
dna / PDBOutput.ccconformation / Residue.hh
dna / PDBOutput.ccchemical / ResidueType.hh
dna / PDBOutput.ccscoring / ScoreFunction.hh
dna / PDBOutput.ccscoring / ScoreFunctionFactory.hh
dna / PDBOutput.ccscoring / ScoreType.hh
dna / PDBOutput.ccscoring / ScoreTypeManager.hh
dna / PDBOutput.hhpack / task / PackerTask.fwd.hh
dna / PDBOutput.hhpose / Pose.fwd.hh
dna / PDBOutput.hhconformation / Residue.fwd.hh
dna / PDBOutput.hhscoring / ScoreFunction.fwd.hh
dna / PDBOutput.hhtypes.hh
simple_moves / PDBReloadMover.ccimport_pose / import_pose.hh
simple_moves / PDBReloadMover.ccid / types.hh
simple_moves / PDBReloadMover.cctypes.hh
simple_moves / PDBReloadMover.ccpose / util.hh
simple_moves / PDBReloadMover.hhpose / Pose.hh
canonical_sampling / PDBTrajectoryRecorder.ccscoring / Energies.hh
canonical_sampling / PDBTrajectoryRecorder.ccpose / Pose.hh
canonical_sampling / PDBTrajectoryRecorder.ccio / raw_data / ScoreStruct.hh
canonical_sampling / PDBTrajectoryRecorder.hhpose / Pose.fwd.hh
canonical_sampling / PDBTrajectoryRecorder.hhtypes.hh
match / output / PDBWriter.ccio / pdb / file_data.hh
match / output / PDBWriter.ccscoring / constraints / Func.hh
match / output / PDBWriter.ccpose / PDBInfo.hh
match / output / PDBWriter.ccpose / Pose.hh
match / output / PDBWriter.ccio / pdb / pose_io.hh
match / output / PDBWriter.ccpose / Remarks.hh
match / output / PDBWriter.ccconformation / Residue.hh
match / output / PDBWriter.hhpose / Pose.fwd.hh
match / output / PDBWriter.hhconformation / Residue.fwd.hh
scoring / methods / saxs / PDDFEnergy.ccchemical / AtomType.hh
scoring / methods / saxs / PDDFEnergy.ccchemical / ChemicalManager.hh
scoring / methods / saxs / PDDFEnergy.ccscoring / EnergyMap.hh
scoring / methods / saxs / PDDFEnergy.ccscoring / saxs / FormFactor.hh
scoring / methods / saxs / PDDFEnergy.ccscoring / saxs / FormFactorManager.hh
scoring / methods / saxs / PDDFEnergy.ccimport_pose / import_pose.hh
scoring / methods / saxs / PDDFEnergy.cckinematics / Jump.hh
scoring / methods / saxs / PDDFEnergy.ccpose / Pose.hh
scoring / methods / saxs / PDDFEnergy.ccconformation / Residue.hh
scoring / methods / saxs / PDDFEnergy.ccutil / SwitchResidueTypeSet.hh
scoring / methods / saxs / PDDFEnergy.ccscoring / methods / WholeStructureEnergy.hh
scoring / methods / saxs / PDDFEnergy.hhscoring / methods / EnergyMethodOptions.fwd.hh
scoring / methods / saxs / PDDFEnergy.hhscoring / saxs / FormFactorManager.fwd.hh
scoring / methods / saxs / PDDFEnergy.hhpose / Pose.fwd.hh
scoring / methods / saxs / PDDFEnergy.hhscoring / ScoreFunction.fwd.hh
scoring / methods / saxs / PDDFEnergy.hhscoring / ScoreType.hh
scoring / methods / saxs / PDDFEnergy.hhscoring / methods / WholeStructureEnergy.hh
scoring / methods / saxs / PDDFEnergyCreator.hhscoring / methods / EnergyMethodCreator.hh
simple_filters / PDDFScoreFilter.cctypes.hh
simple_filters / PDDFScoreFilter.hhpose / Pose.fwd.hh
noesy_assign / PeakAssignment.ccscoring / constraints / AmbiguousNMRDistanceConstraint.hh
noesy_assign / PeakAssignment.ccscoring / constraints / BoundConstraint.hh
noesy_assign / PeakAssignment.hhscoring / constraints / AmbiguousNMRDistanceConstraint.fwd.hh
noesy_assign / PeakAssignment.hhscoring / constraints / Func.hh
noesy_assign / PeakAssignment.hhid / NamedAtomID.fwd.hh
noesy_assign / PeakAssignment.hhpose / Pose.fwd.hh
noesy_assign / PeakAssignment.hhtypes.hh
noesy_assign / PeakAssignmentParameters.hhtypes.hh
noesy_assign / PeakAssignmentResidueMap.hhid / NamedAtomID.fwd.hh
noesy_assign / PeakAssignmentResidueMap.hhtypes.hh
noesy_assign / PeakCalibrator.hhid / NamedAtomID.fwd.hh
noesy_assign / PeakCalibrator.hhtypes.hh
noesy_assign / PeakFileFormat.ccchemical / AA.hh
noesy_assign / PeakFileFormat.cctypes.hh
noesy_assign / PeakFileFormat.hhtypes.hh
noesy_assign / PeakFileFormat_Sparky.ccchemical / AA.hh
noesy_assign / PeakFileFormat_Sparky.cctypes.hh
noesy_assign / PeakFileFormat_Sparky.hhtypes.hh
noesy_assign / PeakFileFormat_xpk.ccchemical / AA.hh
noesy_assign / PeakFileFormat_xpk.cctypes.hh
noesy_assign / PeakFileFormat_xpk.hhtypes.hh
protein_interface_design / movers / PeptideStapleDesignMover.ccpose / selection.hh
protein_interface_design / movers / PeptideStapleDesignMover.hhpose / Pose.fwd.hh
protein_interface_design / movers / PeptideStapleDesignMover.hhtypes.hh
simple_moves / PeptideStapleMover.ccscoring / constraints / AngleConstraint.hh
simple_moves / PeptideStapleMover.ccid / AtomID.hh
simple_moves / PeptideStapleMover.ccscoring / constraints / AtomPairConstraint.hh
simple_moves / PeptideStapleMover.ccscoring / constraints / CircularHarmonicFunc.hh
simple_moves / PeptideStapleMover.ccconformation / Conformation.hh
simple_moves / PeptideStapleMover.ccscoring / constraints / DihedralConstraint.hh
simple_moves / PeptideStapleMover.cckinematics / FoldTree.hh
simple_moves / PeptideStapleMover.ccoptimization / MinimizerOptions.hh
simple_moves / PeptideStapleMover.cckinematics / MoveMap.hh
simple_moves / PeptideStapleMover.ccpose / Pose.hh
simple_moves / PeptideStapleMover.ccconformation / Residue.hh
simple_moves / PeptideStapleMover.ccchemical / ResidueConnection.hh
simple_moves / PeptideStapleMover.ccchemical / ResidueTypeSet.hh
simple_moves / PeptideStapleMover.ccscoring / ScoreFunction.hh
simple_moves / PeptideStapleMover.ccscoring / ScoreFunctionFactory.hh
simple_moves / PeptideStapleMover.cctypes.hh
simple_moves / PeptideStapleMover.hhpose / Pose.fwd.hh
simple_moves / sidechain_moves / PerturbChiSidechainMover.ccconformation / Conformation.hh
simple_moves / sidechain_moves / PerturbChiSidechainMover.ccid / DOF_ID_Range.hh
simple_moves / sidechain_moves / PerturbChiSidechainMover.ccpack / dunbrack / DunbrackRotamer.hh
simple_moves / sidechain_moves / PerturbChiSidechainMover.ccpack / task / PackerTask.hh
simple_moves / sidechain_moves / PerturbChiSidechainMover.ccpose / Pose.hh
simple_moves / sidechain_moves / PerturbChiSidechainMover.ccconformation / Residue.hh
simple_moves / sidechain_moves / PerturbChiSidechainMover.ccconformation / ResidueFactory.hh
simple_moves / sidechain_moves / PerturbChiSidechainMover.ccchemical / ResidueType.hh
simple_moves / sidechain_moves / PerturbChiSidechainMover.ccpack / dunbrack / RotamerLibraryScratchSpace.hh
simple_moves / sidechain_moves / PerturbChiSidechainMover.ccscoring / ScoringManager.hh
simple_moves / sidechain_moves / PerturbChiSidechainMover.ccpack / dunbrack / SingleResidueDunbrackLibrary.hh
simple_moves / sidechain_moves / PerturbChiSidechainMover.ccpack / task / TaskFactory.hh
simple_moves / sidechain_moves / PerturbChiSidechainMover.ccpack / task / operation / TaskOperations.hh
simple_moves / sidechain_moves / PerturbChiSidechainMover.ccid / TorsionID.hh
simple_moves / sidechain_moves / PerturbChiSidechainMover.cctypes.hh
simple_moves / sidechain_moves / PerturbChiSidechainMover.hhid / DOF_ID_Range.fwd.hh
simple_moves / sidechain_moves / PerturbChiSidechainMover.hhpack / dunbrack / DunbrackRotamer.fwd.hh
simple_moves / sidechain_moves / PerturbChiSidechainMover.hhpack / dunbrack / DunbrackRotamer.hh
simple_moves / sidechain_moves / PerturbChiSidechainMover.hhpack / task / PackerTask.fwd.hh
simple_moves / sidechain_moves / PerturbChiSidechainMover.hhpose / Pose.fwd.hh
simple_moves / sidechain_moves / PerturbChiSidechainMover.hhchemical / ResidueType.fwd.hh
simple_moves / sidechain_moves / PerturbChiSidechainMover.hhpack / dunbrack / RotamerLibrary.fwd.hh
simple_moves / sidechain_moves / PerturbChiSidechainMover.hhpack / task / TaskFactory.fwd.hh
simple_moves / sidechain_moves / PerturbRotamerSidechainMover.ccconformation / Conformation.hh
simple_moves / sidechain_moves / PerturbRotamerSidechainMover.ccid / DOF_ID_Range.hh
simple_moves / sidechain_moves / PerturbRotamerSidechainMover.ccpack / dunbrack / DunbrackRotamer.hh
simple_moves / sidechain_moves / PerturbRotamerSidechainMover.ccpack / task / PackerTask.hh
simple_moves / sidechain_moves / PerturbRotamerSidechainMover.ccpose / Pose.hh
simple_moves / sidechain_moves / PerturbRotamerSidechainMover.ccconformation / Residue.hh
simple_moves / sidechain_moves / PerturbRotamerSidechainMover.ccconformation / ResidueFactory.hh
simple_moves / sidechain_moves / PerturbRotamerSidechainMover.ccchemical / ResidueType.hh
simple_moves / sidechain_moves / PerturbRotamerSidechainMover.ccpack / dunbrack / RotamerLibraryScratchSpace.hh
simple_moves / sidechain_moves / PerturbRotamerSidechainMover.ccscoring / ScoringManager.hh
simple_moves / sidechain_moves / PerturbRotamerSidechainMover.ccpack / dunbrack / SingleResidueDunbrackLibrary.hh
simple_moves / sidechain_moves / PerturbRotamerSidechainMover.ccpack / task / TaskFactory.hh
simple_moves / sidechain_moves / PerturbRotamerSidechainMover.ccpack / task / operation / TaskOperations.hh
simple_moves / sidechain_moves / PerturbRotamerSidechainMover.ccid / TorsionID.hh
simple_moves / sidechain_moves / PerturbRotamerSidechainMover.cctypes.hh
simple_moves / sidechain_moves / PerturbRotamerSidechainMover.hhid / DOF_ID_Range.fwd.hh
simple_moves / sidechain_moves / PerturbRotamerSidechainMover.hhpack / dunbrack / DunbrackRotamer.fwd.hh
simple_moves / sidechain_moves / PerturbRotamerSidechainMover.hhpack / dunbrack / DunbrackRotamer.hh
simple_moves / sidechain_moves / PerturbRotamerSidechainMover.hhpack / task / PackerTask.fwd.hh
simple_moves / sidechain_moves / PerturbRotamerSidechainMover.hhpose / Pose.fwd.hh
simple_moves / sidechain_moves / PerturbRotamerSidechainMover.hhchemical / ResidueType.fwd.hh
simple_moves / sidechain_moves / PerturbRotamerSidechainMover.hhpack / dunbrack / RotamerLibrary.fwd.hh
simple_moves / sidechain_moves / PerturbRotamerSidechainMover.hhpack / task / TaskFactory.fwd.hh
frag_picker / scores / Phi.cctypes.hh
frag_picker / scores / Phi.hhtypes.hh
frag_picker / scores / PhiPsiRmsd.ccimport_pose / import_pose.hh
frag_picker / scores / PhiPsiRmsd.ccpose / Pose.hh
frag_picker / scores / PhiPsiRmsd.hhtypes.hh
frag_picker / scores / PhiPsiSquareWell.ccimport_pose / import_pose.hh
frag_picker / scores / PhiPsiSquareWell.ccpose / Pose.hh
frag_picker / scores / PhiPsiSquareWell.hhtypes.hh
frag_picker / PhiPsiTalosIO.cctypes.hh
frag_picker / PhiPsiTalosIO.hhtypes.hh
toolbox / pose_metric_calculators / PiPiCalculator.ccpose / Pose.hh
toolbox / pose_metric_calculators / PiPiCalculator.ccconformation / Residue.hh
toolbox / pose_metric_calculators / PiPiCalculator.hhpose / Pose.fwd.hh
toolbox / pose_metric_calculators / PiPiCalculator.hhpose / metrics / PoseMetricCalculatorBase.hh
toolbox / pose_metric_calculators / PiPiCalculator.hhtypes.hh
seeded_abinitio / PlaceFragments.ccchemical / AA.hh
seeded_abinitio / PlaceFragments.ccchemical / ChemicalManager.hh
seeded_abinitio / PlaceFragments.ccconformation / Conformation.hh
seeded_abinitio / PlaceFragments.ccfragment / ConstantLengthFragSet.hh
seeded_abinitio / PlaceFragments.ccfragment / FragData.hh
seeded_abinitio / PlaceFragments.ccfragment / FragmentIO.hh
seeded_abinitio / PlaceFragments.ccfragment / picking_old / FragmentLibraryManager.hh
seeded_abinitio / PlaceFragments.ccfragment / FragSet.hh
seeded_abinitio / PlaceFragments.ccfragment / Frame.hh
seeded_abinitio / PlaceFragments.ccfragment / FrameIterator.hh
seeded_abinitio / PlaceFragments.ccfragment / FrameIteratorWorker_.hh
seeded_abinitio / PlaceFragments.ccfragment / IndependentBBTorsionSRFD.hh
seeded_abinitio / PlaceFragments.ccfragment / OrderedFragSet.hh
seeded_abinitio / PlaceFragments.ccpose / PDBInfo.hh
seeded_abinitio / PlaceFragments.ccpose / Pose.hh
seeded_abinitio / PlaceFragments.ccconformation / Residue.hh
seeded_abinitio / PlaceFragments.ccconformation / ResidueFactory.hh
seeded_abinitio / PlaceFragments.ccchemical / ResidueTypeSet.hh
seeded_abinitio / PlaceFragments.ccscoring / rms_util.hh
seeded_abinitio / PlaceFragments.ccsequence / Sequence.hh
seeded_abinitio / PlaceFragments.ccsequence / SequenceAlignment.hh
seeded_abinitio / PlaceFragments.ccid / SequenceMapping.hh
seeded_abinitio / PlaceFragments.cctypes.hh
seeded_abinitio / PlaceFragments.ccsequence / util.hh
seeded_abinitio / PlaceFragments.ccfragment / util.hh
seeded_abinitio / PlaceFragments.ccfragment / picking_old / vall / util.hh
seeded_abinitio / PlaceFragments.hhfragment / FragData.hh
seeded_abinitio / PlaceFragments.hhfragment / FragSet.fwd.hh
seeded_abinitio / PlaceFragments.hhfragment / Frame.hh
seeded_abinitio / PlaceFragments.hhpose / Pose.hh
seeded_abinitio / PlaceFragments.hhtypes.hh
protein_interface_design / movers / PlacementAuctionMover.ccchemical / AA.hh
protein_interface_design / movers / PlacementAuctionMover.ccid / AtomID.hh
protein_interface_design / movers / PlacementAuctionMover.ccscoring / constraints / BackboneStubConstraint.hh
protein_interface_design / movers / PlacementAuctionMover.ccconformation / Conformation.hh
protein_interface_design / movers / PlacementAuctionMover.ccpack / task / PackerTask.hh
protein_interface_design / movers / PlacementAuctionMover.ccpose / Pose.hh
protein_interface_design / movers / PlacementAuctionMover.ccscoring / ScoreFunction.hh
protein_interface_design / movers / PlacementAuctionMover.ccscoring / ScoreFunctionFactory.hh
protein_interface_design / movers / PlacementAuctionMover.ccscoring / ScoreType.hh
protein_interface_design / movers / PlacementAuctionMover.ccpack / task / TaskFactory.hh
protein_interface_design / movers / PlacementAuctionMover.cctypes.hh
protein_interface_design / movers / PlacementAuctionMover.hhtypes.hh
protein_interface_design / movers / PlacementMinimizationMover.ccchemical / AA.hh
protein_interface_design / movers / PlacementMinimizationMover.ccid / AtomID.hh
protein_interface_design / movers / PlacementMinimizationMover.ccconformation / Conformation.hh
protein_interface_design / movers / PlacementMinimizationMover.ccscoring / constraints / Constraint.hh
protein_interface_design / movers / PlacementMinimizationMover.cckinematics / FoldTree.hh
protein_interface_design / movers / PlacementMinimizationMover.ccpack / task / PackerTask.hh
protein_interface_design / movers / PlacementMinimizationMover.ccpose / Pose.hh
protein_interface_design / movers / PlacementMinimizationMover.ccscoring / ScoreFunction.hh
protein_interface_design / movers / PlacementMinimizationMover.ccscoring / ScoreType.hh
protein_interface_design / movers / PlacementMinimizationMover.ccpack / task / TaskFactory.hh
protein_interface_design / movers / PlacementMinimizationMover.cctypes.hh
protein_interface_design / movers / PlacementMinimizationMover.hhpose / Pose.fwd.hh
protein_interface_design / movers / PlacementMinimizationMover.hhtypes.hh
protein_interface_design / movers / PlaceOnLoop.ccchemical / AA.hh
protein_interface_design / movers / PlaceOnLoop.ccid / AtomID.hh
protein_interface_design / movers / PlaceOnLoop.ccconformation / Conformation.hh
protein_interface_design / movers / PlaceOnLoop.ccscoring / constraints / Constraint.hh
protein_interface_design / movers / PlaceOnLoop.cckinematics / FoldTree.hh
protein_interface_design / movers / PlaceOnLoop.cckinematics / Jump.hh
protein_interface_design / movers / PlaceOnLoop.ccpack / pack_rotamers.hh
protein_interface_design / movers / PlaceOnLoop.ccpack / task / PackerTask.hh
protein_interface_design / movers / PlaceOnLoop.ccpose / Pose.hh
protein_interface_design / movers / PlaceOnLoop.ccconformation / Residue.hh
protein_interface_design / movers / PlaceOnLoop.ccconformation / ResidueFactory.hh
protein_interface_design / movers / PlaceOnLoop.ccchemical / ResidueTypeSet.hh
protein_interface_design / movers / PlaceOnLoop.ccscoring / ScoreFunction.hh
protein_interface_design / movers / PlaceOnLoop.ccpack / task / TaskFactory.hh
protein_interface_design / movers / PlaceOnLoop.hhpose / Pose.fwd.hh
protein_interface_design / movers / PlaceOnLoop.hhscoring / ScoreFunction.fwd.hh
protein_interface_design / movers / PlaceOnLoop.hhtypes.hh
hotspot_hashing / movers / PlaceProbeMover.ccpack / task / PackerTask.hh
hotspot_hashing / movers / PlaceProbeMover.ccpose / Pose.hh
hotspot_hashing / movers / PlaceProbeMover.ccconformation / Residue.hh
hotspot_hashing / movers / PlaceProbeMover.ccconformation / ResidueFactory.hh
hotspot_hashing / movers / PlaceProbeMover.ccchemical / ResidueType.hh
hotspot_hashing / movers / PlaceProbeMover.ccchemical / ResidueTypeSet.hh
hotspot_hashing / movers / PlaceProbeMover.ccscoring / ScoreFunction.hh
hotspot_hashing / movers / PlaceProbeMover.ccpack / task / TaskFactory.hh
hotspot_hashing / movers / PlaceProbeMover.ccpack / task / operation / TaskOperations.hh
hotspot_hashing / movers / PlaceProbeMover.ccpose / util.hh
hotspot_hashing / movers / PlaceProbeMover.hhpack / task / PackerTask.fwd.hh
hotspot_hashing / movers / PlaceProbeMover.hhpose / Pose.fwd.hh
hotspot_hashing / movers / PlaceProbeMover.hhconformation / Residue.fwd.hh
hotspot_hashing / movers / PlaceProbeMover.hhscoring / ScoreFunction.hh
hotspot_hashing / movers / PlaceProbeMover.hhkinematics / Stub.fwd.hh
protein_interface_design / movers / PlaceSimultaneouslyMover.ccchemical / AA.hh
protein_interface_design / movers / PlaceSimultaneouslyMover.ccid / AtomID.hh
protein_interface_design / movers / PlaceSimultaneouslyMover.ccconformation / Conformation.hh
protein_interface_design / movers / PlaceSimultaneouslyMover.ccscoring / constraints / ConstraintSet.hh
protein_interface_design / movers / PlaceSimultaneouslyMover.ccpack / pack_rotamers.hh
protein_interface_design / movers / PlaceSimultaneouslyMover.ccpack / task / PackerTask.hh
protein_interface_design / movers / PlaceSimultaneouslyMover.ccpose / Pose.hh
protein_interface_design / movers / PlaceSimultaneouslyMover.ccpack / task / ResfileReader.hh
protein_interface_design / movers / PlaceSimultaneouslyMover.ccchemical / ResidueType.hh
protein_interface_design / movers / PlaceSimultaneouslyMover.ccscoring / ScoreFunction.hh
protein_interface_design / movers / PlaceSimultaneouslyMover.ccscoring / ScoreFunctionFactory.hh
protein_interface_design / movers / PlaceSimultaneouslyMover.ccscoring / ScoreType.hh
protein_interface_design / movers / PlaceSimultaneouslyMover.ccpack / task / TaskFactory.hh
protein_interface_design / movers / PlaceSimultaneouslyMover.ccpack / task / operation / TaskOperations.hh
protein_interface_design / movers / PlaceSimultaneouslyMover.cctypes.hh
protein_interface_design / movers / PlaceSimultaneouslyMover.ccpose / util.hh
protein_interface_design / movers / PlaceSimultaneouslyMover.hhpack / task / PackerTask.fwd.hh
protein_interface_design / movers / PlaceSimultaneouslyMover.hhpose / Pose.hh
protein_interface_design / movers / PlaceSimultaneouslyMover.hhtypes.hh
protein_interface_design / movers / PlaceStubMover.ccchemical / AA.hh
protein_interface_design / movers / PlaceStubMover.ccscoring / constraints / AmbiguousConstraint.hh
protein_interface_design / movers / PlaceStubMover.ccid / AtomID.hh
protein_interface_design / movers / PlaceStubMover.ccchemical / AtomType.hh
protein_interface_design / movers / PlaceStubMover.ccscoring / constraints / BackboneStubConstraint.hh
protein_interface_design / movers / PlaceStubMover.ccconformation / Conformation.hh
protein_interface_design / movers / PlaceStubMover.ccscoring / constraints / ConstraintSet.hh
protein_interface_design / movers / PlaceStubMover.cckinematics / FoldTree.hh
protein_interface_design / movers / PlaceStubMover.ccpack / pack_rotamers.hh
protein_interface_design / movers / PlaceStubMover.ccpack / task / PackerTask.hh
protein_interface_design / movers / PlaceStubMover.ccpose / Pose.hh
protein_interface_design / movers / PlaceStubMover.ccpack / task / ResfileReader.hh
protein_interface_design / movers / PlaceStubMover.ccchemical / ResidueType.hh
protein_interface_design / movers / PlaceStubMover.ccscoring / ScoreFunction.hh
protein_interface_design / movers / PlaceStubMover.ccscoring / ScoreFunctionFactory.hh
protein_interface_design / movers / PlaceStubMover.ccscoring / ScoreType.hh
protein_interface_design / movers / PlaceStubMover.ccpose / selection.hh
protein_interface_design / movers / PlaceStubMover.ccpack / task / TaskFactory.hh
protein_interface_design / movers / PlaceStubMover.ccpack / task / operation / TaskOperations.hh
protein_interface_design / movers / PlaceStubMover.cctypes.hh
protein_interface_design / movers / PlaceStubMover.ccpose / util.hh
protein_interface_design / movers / PlaceStubMover.hhkinematics / FoldTree.fwd.hh
protein_interface_design / movers / PlaceStubMover.hhscoring / constraints / HarmonicFunc.fwd.hh
protein_interface_design / movers / PlaceStubMover.hhpack / task / PackerTask.fwd.hh
protein_interface_design / movers / PlaceStubMover.hhpose / Pose.fwd.hh
protein_interface_design / movers / PlaceStubMover.hhscoring / ScoreFunction.fwd.hh
protein_interface_design / movers / PlaceStubMover.hhtypes.hh
hotspot_hashing / movers / PlaceSurfaceProbe.ccpose / Pose.hh
hotspot_hashing / movers / PlaceSurfaceProbe.ccconformation / Residue.hh
hotspot_hashing / movers / PlaceSurfaceProbe.ccconformation / ResidueFactory.hh
hotspot_hashing / movers / PlaceSurfaceProbe.ccchemical / ResidueType.hh
hotspot_hashing / movers / PlaceSurfaceProbe.ccchemical / ResidueTypeSet.hh
hotspot_hashing / movers / PlaceSurfaceProbe.ccpack / task / TaskFactory.hh
hotspot_hashing / movers / PlaceSurfaceProbe.ccpose / util.hh
hotspot_hashing / movers / PlaceSurfaceProbe.hhpack / task / PackerTask.fwd.hh
hotspot_hashing / movers / PlaceSurfaceProbe.hhpose / Pose.fwd.hh
hotspot_hashing / movers / PlaceSurfaceProbe.hhconformation / Residue.fwd.hh
hotspot_hashing / movers / PlaceSurfaceProbe.hhscoring / ScoreFunction.hh
hotspot_hashing / movers / PlaceSurfaceProbe.hhkinematics / Stub.fwd.hh
hotspot_hashing / movers / PlaceSurfaceProbe.hhpack / task / TaskFactory.fwd.hh
protein_interface_design / movers / PlaceUtils.ccchemical / AA.hh
protein_interface_design / movers / PlaceUtils.ccid / AtomID.hh
protein_interface_design / movers / PlaceUtils.ccconformation / Conformation.hh
protein_interface_design / movers / PlaceUtils.ccscoring / constraints / CoordinateConstraint.hh
protein_interface_design / movers / PlaceUtils.ccscoring / constraints / HarmonicFunc.hh
protein_interface_design / movers / PlaceUtils.ccpack / pack_rotamers.hh
protein_interface_design / movers / PlaceUtils.ccpack / task / PackerTask.hh
protein_interface_design / movers / PlaceUtils.ccpose / Pose.hh
protein_interface_design / movers / PlaceUtils.ccpack / task / ResfileReader.hh
protein_interface_design / movers / PlaceUtils.ccconformation / Residue.hh
protein_interface_design / movers / PlaceUtils.ccchemical / ResidueType.hh
protein_interface_design / movers / PlaceUtils.ccscoring / ScoreFunction.hh
protein_interface_design / movers / PlaceUtils.ccscoring / ScoreFunctionFactory.hh
protein_interface_design / movers / PlaceUtils.ccscoring / ScoreType.hh
protein_interface_design / movers / PlaceUtils.ccpack / task / TaskFactory.hh
protein_interface_design / movers / PlaceUtils.cctypes.hh
protein_interface_design / movers / PlaceUtils.hhscoring / constraints / Constraint.fwd.hh
protein_interface_design / movers / PlaceUtils.hhscoring / constraints / HarmonicFunc.fwd.hh
protein_interface_design / movers / PlaceUtils.hhpose / Pose.fwd.hh
protein_interface_design / movers / PlaceUtils.hhconformation / Residue.fwd.hh
protein_interface_design / movers / PlaceUtils.hhscoring / ScoreFunction.fwd.hh
protein_interface_design / movers / PlaceUtils.hhpack / task / TaskFactory.fwd.hh
protein_interface_design / movers / PlaceUtils.hhtypes.hh
optimize_weights / PNatLigPoseOptEData.ccscoring / ScoreType.hh
pockets / PocketConstraint.ccconformation / Conformation.hh
pockets / PocketConstraint.ccscoring / EnergyMap.hh
pockets / PocketConstraint.ccpose / PDBInfo.hh
pockets / PocketConstraint.ccpose / Pose.hh
pockets / PocketConstraint.ccconformation / Residue.fwd.hh
pockets / PocketConstraint.ccconformation / Residue.hh
pockets / PocketConstraint.ccscoring / ScoreType.hh
pockets / PocketConstraint.ccscoring / constraints / XYZ_Func.hh
pockets / PocketConstraint.hhid / AtomID.hh
pockets / PocketConstraint.hhscoring / constraints / Constraint.hh
pockets / PocketConstraint.hhpose / Pose.fwd.hh
pockets / PocketConstraint.hhconformation / Residue.fwd.hh
pockets / PocketConstraintCreator.hhscoring / constraints / ConstraintCreator.hh
pockets / PocketGrid.ccchemical / AtomType.hh
pockets / PocketGrid.ccconformation / Conformation.hh
pockets / PocketGrid.ccpose / PDBInfo.hh
pockets / PocketGrid.ccpose / Pose.hh
pockets / PocketGrid.ccconformation / Residue.hh
pockets / PocketGrid.ccscoring / constraints / XYZ_Func.hh
pockets / PocketGrid.hhpose / Pose.fwd.hh
pockets / PocketGrid.hhconformation / Residue.fwd.hh
pockets / PocketGrid.hhtypes.hh
pockets / PocketGrid.hhscoring / constraints / XYZ_Func.fwd.hh
design_opt / PointMutationCalculator.ccconformation / Conformation.hh
design_opt / PointMutationCalculator.ccpack / make_symmetric_task.hh
design_opt / PointMutationCalculator.ccpack / pack_rotamers.hh
design_opt / PointMutationCalculator.ccpack / task / PackerTask.hh
design_opt / PointMutationCalculator.ccpose / PDBInfo.hh
design_opt / PointMutationCalculator.ccpose / Pose.hh
design_opt / PointMutationCalculator.ccconformation / Residue.hh
design_opt / PointMutationCalculator.ccchemical / ResidueType.fwd.hh
design_opt / PointMutationCalculator.ccchemical / ResidueType.hh
design_opt / PointMutationCalculator.ccscoring / ScoreFunction.hh
design_opt / PointMutationCalculator.ccconformation / symmetry / SymmetryInfo.hh
design_opt / PointMutationCalculator.ccpack / task / TaskFactory.hh
design_opt / PointMutationCalculator.ccpack / task / operation / TaskOperations.hh
design_opt / PointMutationCalculator.ccpose / symmetry / util.hh
design_opt / PointMutationCalculator.hhchemical / AA.hh
design_opt / PointMutationCalculator.hhpack / task / PackerTask.fwd.hh
design_opt / PointMutationCalculator.hhpose / Pose.fwd.hh
design_opt / PointMutationCalculator.hhscoring / ScoreFunction.fwd.hh
design_opt / PointMutationCalculator.hhpack / task / TaskFactory.fwd.hh
design_opt / PointMutationCalculator.hhtypes.hh
pmut_scan / PointMutScanDriver.ccchemical / AA.hh
pmut_scan / PointMutScanDriver.ccpose / metrics / CalculatorFactory.hh
pmut_scan / PointMutScanDriver.ccscoring / EnergyMap.hh
pmut_scan / PointMutScanDriver.ccscoring / methods / EnergyMethodOptions.hh
pmut_scan / PointMutScanDriver.ccconformation / find_neighbors.hh
pmut_scan / PointMutScanDriver.ccgraph / Graph.hh
pmut_scan / PointMutScanDriver.ccscoring / hbonds / HBondOptions.hh
pmut_scan / PointMutScanDriver.ccimport_pose / import_pose.hh
pmut_scan / PointMutScanDriver.cckinematics / MoveMap.hh
pmut_scan / PointMutScanDriver.ccpack / task / PackerTask.hh
pmut_scan / PointMutScanDriver.ccpose / PDBInfo.hh
pmut_scan / PointMutScanDriver.ccconformation / PointGraph.hh
pmut_scan / PointMutScanDriver.ccconformation / PointGraphData.hh
pmut_scan / PointMutScanDriver.ccpose / Pose.hh
pmut_scan / PointMutScanDriver.ccconformation / Residue.hh
pmut_scan / PointMutScanDriver.ccscoring / ScoreFunction.hh
pmut_scan / PointMutScanDriver.ccscoring / ScoreFunctionFactory.hh
pmut_scan / PointMutScanDriver.ccscoring / ScoreType.hh
pmut_scan / PointMutScanDriver.ccpack / task / TaskFactory.hh
pmut_scan / PointMutScanDriver.ccpack / task / operation / TaskOperation.hh
pmut_scan / PointMutScanDriver.ccpack / task / operation / TaskOperations.hh
pmut_scan / PointMutScanDriver.ccgraph / UpperEdgeGraph.hh
pmut_scan / PointMutScanDriver.hhpose / Pose.fwd.hh
pmut_scan / PointMutScanDriver.hhscoring / ScoreFunction.fwd.hh
pmut_scan / PointMutScanDriver.hhtypes.hh
nonlocal / Policy.hhfragment / FragSet.hh
nonlocal / Policy.hhfragment / Frame.fwd.hh
nonlocal / Policy.hhpose / Pose.fwd.hh
nonlocal / Policy.hhtypes.hh
nonlocal / PolicyFactory.ccfragment / FragSet.hh
nonlocal / PolicyFactory.cctypes.hh
nonlocal / PolicyFactory.ccfragment / util.hh
nonlocal / PolicyFactory.hhfragment / FragSet.fwd.hh
nonlocal / PolicyFactory.hhtypes.hh
canonical_sampling / mc_convergence_checks / Pool_ConvergenceCheck.ccpose / Pose.fwd.hh
canonical_sampling / mc_convergence_checks / Pool_ConvergenceCheck.ccscoring / ScoreFunction.fwd.hh
canonical_sampling / mc_convergence_checks / Pool_ConvergenceCheck.ccio / silent / SilentFileData.hh
canonical_sampling / mc_convergence_checks / Pool_ConvergenceCheck.cctypes.hh
canonical_sampling / mc_convergence_checks / Pool_ConvergenceCheck.hhpose / Pose.fwd.hh
canonical_sampling / mc_convergence_checks / Pool_ConvergenceCheck.hhscoring / ScoreFunction.fwd.hh
canonical_sampling / mc_convergence_checks / Pool_ConvergenceCheck.hhtypes.hh
canonical_sampling / mc_convergence_checks / pool_util.cctypes.hh
canonical_sampling / mc_convergence_checks / pool_util.hhtypes.hh
simple_filters / PoolEvaluatorCreator.ccpose / Pose.hh
simple_filters / PoolEvaluatorCreator.ccio / silent / silent.fwd.hh
simple_filters / PoolEvaluatorCreator.ccio / silent / SilentStruct.hh
simple_filters / PoolEvaluatorCreator.hhtypes.hh
toolbox / pose_manipulation.ccid / AtomID_Map.hh
toolbox / pose_manipulation.ccchemical / ChemicalManager.hh
toolbox / pose_manipulation.ccconformation / Conformation.hh
toolbox / pose_manipulation.ccscoring / Energies.hh
toolbox / pose_manipulation.cckinematics / FoldTree.hh
toolbox / pose_manipulation.cckinematics / MoveMap.hh
toolbox / pose_manipulation.ccpose / Pose.hh
toolbox / pose_manipulation.ccconformation / Residue.hh
toolbox / pose_manipulation.ccchemical / ResidueType.hh
toolbox / pose_manipulation.ccchemical / ResidueTypeSet.hh
toolbox / pose_manipulation.ccscoring / rms_util.hh
toolbox / pose_manipulation.ccscoring / ScoreFunction.hh
toolbox / pose_manipulation.cctypes.hh
toolbox / pose_manipulation.ccpose / util.hh
toolbox / pose_manipulation.cckinematics / util.hh
toolbox / pose_manipulation.ccpose / util.tmpl.hh
toolbox / pose_manipulation.ccchemical / VariantType.hh
toolbox / pose_manipulation.hhpose / Pose.fwd.hh
toolbox / pose_manipulation.hhchemical / ResidueType.fwd.hh
toolbox / pose_manipulation.hhtypes.hh
forge / methods / pose_mod.ccconformation / Conformation.hh
forge / methods / pose_mod.ccid / DOF_ID.hh
forge / methods / pose_mod.ccscoring / Energies.hh
forge / methods / pose_mod.cckinematics / FoldTree.hh
forge / methods / pose_mod.ccpack / task / operation / OptCysHG.hh
forge / methods / pose_mod.ccpack / pack_rotamers.hh
forge / methods / pose_mod.ccpack / task / PackerTask.hh
forge / methods / pose_mod.ccscoring / ScoreFunction.hh
forge / methods / pose_mod.ccscoring / ScoreFunctionFactory.hh
forge / methods / pose_mod.ccpack / task / TaskFactory.hh
forge / methods / pose_mod.ccchemical / VariantType.hh
forge / methods / pose_mod.hhchemical / AA.hh
forge / methods / pose_mod.hhchemical / Adduct.fwd.hh
forge / methods / pose_mod.hhchemical / Adduct.hh
forge / methods / pose_mod.hhkinematics / tree / Atom.fwd.hh
forge / methods / pose_mod.hhconformation / Atom.fwd.hh
forge / methods / pose_mod.hhkinematics / tree / Atom.hh
forge / methods / pose_mod.hhconformation / Atom.hh
forge / methods / pose_mod.hhchemical / AtomICoor.fwd.hh
forge / methods / pose_mod.hhchemical / AtomICoor.hh
forge / methods / pose_mod.hhid / AtomID.fwd.hh
forge / methods / pose_mod.hhid / AtomID.hh
forge / methods / pose_mod.hhid / AtomID_Map.fwd.hh
forge / methods / pose_mod.hhid / AtomID_Map.hh
forge / methods / pose_mod.hhid / AtomID_Mask.fwd.hh
forge / methods / pose_mod.hhkinematics / AtomPointer.fwd.hh
forge / methods / pose_mod.hhkinematics / AtomTree.fwd.hh
forge / methods / pose_mod.hhkinematics / AtomTree.hh
forge / methods / pose_mod.hhchemical / AtomType.fwd.hh
forge / methods / pose_mod.hhchemical / AtomType.hh
forge / methods / pose_mod.hhchemical / AtomTypeSet.fwd.hh
forge / methods / pose_mod.hhkinematics / AtomWithDOFChange.fwd.hh
forge / methods / pose_mod.hhconformation / Conformation.fwd.hh
forge / methods / pose_mod.hhconformation / Conformation.hh
forge / methods / pose_mod.hhpose / signals / ConformationEvent.fwd.hh
forge / methods / pose_mod.hhconformation / signals / ConnectionEvent.fwd.hh
forge / methods / pose_mod.hhconformation / signals / ConnectionEvent.hh
forge / methods / pose_mod.hhscoring / constraints / Constraint.fwd.hh
forge / methods / pose_mod.hhscoring / constraints / ConstraintSet.fwd.hh
forge / methods / pose_mod.hhpose / signals / DestructionEvent.fwd.hh
forge / methods / pose_mod.hhid / DOF_ID.fwd.hh
forge / methods / pose_mod.hhid / DOF_ID.hh
forge / methods / pose_mod.hhid / DOF_ID_Map.fwd.hh
forge / methods / pose_mod.hhid / DOF_ID_Map.hh
forge / methods / pose_mod.hhid / DOF_ID_Mask.fwd.hh
forge / methods / pose_mod.hhkinematics / DomainMap.fwd.hh
forge / methods / pose_mod.hhkinematics / Edge.fwd.hh
forge / methods / pose_mod.hhkinematics / Edge.hh
forge / methods / pose_mod.hhchemical / ElementSet.fwd.hh
forge / methods / pose_mod.hhscoring / Energies.fwd.hh
forge / methods / pose_mod.hhpose / signals / EnergyEvent.fwd.hh
forge / methods / pose_mod.hhkinematics / FoldTree.fwd.hh
forge / methods / pose_mod.hhkinematics / FoldTree.hh
forge / methods / pose_mod.hhpose / signals / GeneralEvent.fwd.hh
forge / methods / pose_mod.hhconformation / signals / GeneralEvent.fwd.hh
forge / methods / pose_mod.hhconformation / signals / GeneralEvent.hh
forge / methods / pose_mod.hhchemical / orbitals / ICoorOrbitalData.hh
forge / methods / pose_mod.hhconformation / signals / IdentityEvent.fwd.hh
forge / methods / pose_mod.hhconformation / signals / IdentityEvent.hh
forge / methods / pose_mod.hhkinematics / Jump.fwd.hh
forge / methods / pose_mod.hhkinematics / Jump.hh
forge / methods / pose_mod.hhconformation / signals / LengthEvent.fwd.hh
forge / methods / pose_mod.hhconformation / signals / LengthEvent.hh
forge / methods / pose_mod.hhkinematics / MinimizerMapBase.fwd.hh
forge / methods / pose_mod.hhpose / MiniPose.fwd.hh
forge / methods / pose_mod.hhchemical / MMAtomType.fwd.hh
forge / methods / pose_mod.hhchemical / MMAtomTypeSet.fwd.hh
forge / methods / pose_mod.hhchemical / sdf / MolData.fwd.hh
forge / methods / pose_mod.hhchemical / sdf / MolData.hh
forge / methods / pose_mod.hhkinematics / MoveMap.fwd.hh
forge / methods / pose_mod.hhid / NamedAtomID.fwd.hh
forge / methods / pose_mod.hhid / NamedAtomID.hh
forge / methods / pose_mod.hhid / NamedStubID.fwd.hh
forge / methods / pose_mod.hhpose / datacache / ObserverCache.fwd.hh
forge / methods / pose_mod.hhchemical / orbitals / OrbitalType.fwd.hh
forge / methods / pose_mod.hhchemical / orbitals / OrbitalTypeSet.fwd.hh
forge / methods / pose_mod.hhconformation / orbitals / OrbitalXYZCoords.hh
forge / methods / pose_mod.hhpose / PDBInfo.fwd.hh
forge / methods / pose_mod.hhpose / Pose.fwd.hh
forge / methods / pose_mod.hhpose / Pose.hh
forge / methods / pose_mod.hhpose / metrics / PoseMetricContainer.fwd.hh
forge / methods / pose_mod.hhconformation / PseudoBond.fwd.hh
forge / methods / pose_mod.hhchemical / ResConnID.fwd.hh
forge / methods / pose_mod.hhchemical / ResConnID.hh
forge / methods / pose_mod.hhconformation / Residue.fwd.hh
forge / methods / pose_mod.hhconformation / Residue.hh
forge / methods / pose_mod.hhchemical / ResidueConnection.fwd.hh
forge / methods / pose_mod.hhchemical / ResidueConnection.hh
forge / methods / pose_mod.hhkinematics / ResidueCoordinateChangeList.fwd.hh
forge / methods / pose_mod.hhconformation / ResidueFactory.hh
forge / methods / pose_mod.hhchemical / ResidueType.fwd.hh
forge / methods / pose_mod.hhchemical / ResidueType.hh
forge / methods / pose_mod.hhchemical / ResidueTypeSet.fwd.hh
forge / methods / pose_mod.hhpack / dunbrack / RotamerLibrary.fwd.hh
forge / methods / pose_mod.hhkinematics / RT.fwd.hh
forge / methods / pose_mod.hhkinematics / RT.hh
forge / methods / pose_mod.hhscoring / ScoreFunction.fwd.hh
forge / methods / pose_mod.hhscoring / ScoreType.hh
forge / methods / pose_mod.hhid / SequenceMapping.fwd.hh
forge / methods / pose_mod.hhkinematics / Stub.fwd.hh
forge / methods / pose_mod.hhkinematics / Stub.hh
forge / methods / pose_mod.hhid / TorsionID.fwd.hh
forge / methods / pose_mod.hhid / types.hh
forge / methods / pose_mod.hhchemical / types.hh
forge / methods / pose_mod.hhtypes.hh
forge / methods / pose_mod.hhpose / util.hh
forge / methods / pose_mod.hhpose / util.tmpl.hh
forge / methods / pose_mod.hhchemical / VariantType.fwd.hh
forge / methods / pose_mod.hhconformation / signals / XYZEvent.fwd.hh
forge / methods / pose_mod.hhconformation / signals / XYZEvent.hh
features / PoseCommentsFeatures.ccchemical / AA.hh
features / PoseCommentsFeatures.ccconformation / Residue.hh
features / PoseCommentsFeatures.cctypes.hh
features / PoseCommentsFeatures.ccpose / util.hh
features / PoseCommentsFeatures.hhtypes.hh
features / PoseCommentsFeaturesCreator.hhtypes.hh
features / PoseConformationFeatures.ccchemical / AA.hh
features / PoseConformationFeatures.ccpose / annotated_sequence.hh
features / PoseConformationFeatures.ccchemical / ChemicalManager.hh
features / PoseConformationFeatures.ccconformation / Conformation.hh
features / PoseConformationFeatures.ccio / pdb / file_data.hh
features / PoseConformationFeatures.cckinematics / FoldTree.hh
features / PoseConformationFeatures.cckinematics / Jump.hh
features / PoseConformationFeatures.ccpose / Pose.hh
features / PoseConformationFeatures.ccconformation / Residue.hh
features / PoseConformationFeatures.cctypes.hh
features / PoseConformationFeatures.ccconformation / util.hh
features / PoseConformationFeatures.hhtypes.hh
features / PoseConformationFeaturesCreator.hhtypes.hh
evaluation / PoseEvaluator.ccpose / Pose.hh
evaluation / PoseEvaluator.ccio / silent / SilentStruct.hh
evaluation / PoseEvaluator.hhpose / Pose.fwd.hh
evaluation / PoseEvaluator.hhio / silent / silent.fwd.hh
evaluation / PoseEvaluator.hhio / silent / SilentStruct.hh
swa / PoseFilter.hhpose / Pose.fwd.hh
swa / PoseFilter_RMSD_Screen.ccpose / Pose.hh
swa / PoseFilter_RMSD_Screen.ccscoring / rms_util.hh
swa / PoseFilter_RMSD_Screen.ccscoring / rms_util.tmpl.hh
swa / PoseFilter_RMSD_Screen.cctypes.hh
swa / PoseFilter_RMSD_Screen.hhid / AtomID.fwd.hh
swa / PoseFilter_RMSD_Screen.hhpose / Pose.fwd.hh
swa / PoseFilter_RMSD_Screen.hhtypes.hh
simple_filters / PoseInfoFilter.ccpose / datacache / CacheableDataType.hh
simple_filters / PoseInfoFilter.cckinematics / FoldTree.hh
simple_filters / PoseInfoFilter.ccpose / PDBInfo.hh
simple_filters / PoseInfoFilter.ccpose / Pose.hh
simple_filters / PoseInfoFilter.cctypes.hh
simple_filters / PoseInfoFilter.hhpose / Pose.fwd.hh
simple_filters / PoseInfoFilter.hhtypes.hh
jd2 / PoseInputStreamJobInputter.cckinematics / Jump.hh
jd2 / PoseInputStreamJobInputter.ccimport_pose / pose_stream / MetaPoseInputStream.hh
jd2 / PoseInputStreamJobInputter.ccpose / Pose.hh
jd2 / PoseInputStreamJobInputter.ccconformation / Residue.hh
jd2 / PoseInputStreamJobInputter.ccchemical / ResidueTypeSet.fwd.hh
jd2 / PoseInputStreamJobInputter.ccchemical / util.hh
jd2 / PoseInputStreamJobInputter.ccimport_pose / pose_stream / util.hh
jd2 / PoseInputStreamJobInputter.hhimport_pose / pose_stream / MetaPoseInputStream.hh
match / output / PoseInserter.ccpose / Pose.hh
match / output / PoseInserter.hhpose / Pose.fwd.hh
rigid / PoseMembraneRigidBodyMover.ccid / AtomID.hh
rigid / PoseMembraneRigidBodyMover.cckinematics / Jump.hh
rigid / PoseMembraneRigidBodyMover.ccscoring / MembranePotential.hh
rigid / PoseMembraneRigidBodyMover.ccscoring / MembraneTopology.hh
rigid / PoseMembraneRigidBodyMover.ccpose / Pose.hh
rigid / PoseMembraneRigidBodyMover.ccconformation / symmetry / SymmetricConformation.fwd.hh
rigid / PoseMembraneRigidBodyMover.ccconformation / symmetry / SymmetricConformation.hh
rigid / PoseMembraneRigidBodyMover.ccconformation / symmetry / SymmetryInfo.fwd.hh
rigid / PoseMembraneRigidBodyMover.ccconformation / symmetry / SymmetryInfo.hh
rigid / PoseMembraneRigidBodyMover.cctypes.hh
rigid / PoseMembraneRigidBodyMover.ccpose / symmetry / util.hh
rigid / PoseMembraneRigidBodyMover.hhtypes.hh
simple_filters / PoseMetricEvaluator.hhpose / Pose.hh
domain_assembly / PostDockAssemblyScorer.ccpose / PDBInfo.hh
domain_assembly / PostDockAssemblyScorer.ccpose / Pose.hh
domain_assembly / PostDockAssemblyScorer.ccconformation / Residue.hh
domain_assembly / PostDockAssemblyScorer.cctypes.hh
domain_assembly / PostDockAssemblyScorer.ccpose / util.hh
simple_filters / PredictedBurialEvaluator.ccpose / Pose.hh
simple_filters / PredictedBurialEvaluator.ccconformation / Residue.hh
simple_filters / PredictedBurialEvaluator.cctypes.hh
simple_filters / PredictedBurialEvaluator.hhpose / Pose.fwd.hh
simple_filters / PredictedBurialEvaluator.hhio / silent / SilentStruct.fwd.hh
simple_filters / PredictedBurialEvaluator.hhtypes.hh
simple_filters / PredictedBurialFnEvaluatorCreator.ccio / silent / silent.fwd.hh
simple_filters / PredictedBurialFnEvaluatorCreator.ccio / silent / SilentStruct.hh
simple_filters / PredictedBurialFnEvaluatorCreator.hhtypes.hh
protein_interface_design / movers / PrepackMover.ccconformation / Conformation.hh
protein_interface_design / movers / PrepackMover.cckinematics / MoveMap.hh
protein_interface_design / movers / PrepackMover.ccpack / task / operation / NoRepackDisulfides.hh
protein_interface_design / movers / PrepackMover.ccpack / task / PackerTask.hh
protein_interface_design / movers / PrepackMover.ccpose / Pose.hh
protein_interface_design / movers / PrepackMover.ccpack / dunbrack / RotamerConstraint.hh
protein_interface_design / movers / PrepackMover.ccscoring / ScoreFunction.hh
protein_interface_design / movers / PrepackMover.ccpack / task / TaskFactory.hh
protein_interface_design / movers / PrepackMover.ccpack / task / operation / TaskOperations.hh
protein_interface_design / movers / PrepackMover.ccpack / rotamer_set / UnboundRotamersOperation.hh
protein_interface_design / movers / PrepackMover.hhkinematics / MoveMap.fwd.hh
protein_interface_design / movers / PrepackMover.hhpose / Pose.fwd.hh
protein_interface_design / movers / PrepackMover.hhscoring / ScoreFunction.fwd.hh
protein_interface_design / movers / PrepackMover.hhtypes.hh
toolbox / task_operations / PreventChainFromRepackingOperation.ccconformation / Conformation.hh
toolbox / task_operations / PreventChainFromRepackingOperation.ccpose / Pose.hh
toolbox / task_operations / PreventChainFromRepackingOperation.ccpack / task / operation / TaskOperations.hh
toolbox / task_operations / PreventChainFromRepackingOperation.cctypes.hh
toolbox / task_operations / PreventChainFromRepackingOperation.hhpack / task / PackerTask.fwd.hh
toolbox / task_operations / PreventChainFromRepackingOperation.hhpose / Pose.fwd.hh
toolbox / task_operations / PreventChainFromRepackingOperation.hhtypes.hh
toolbox / task_operations / PreventChainFromRepackingOperationCreator.hhpack / task / operation / TaskOperationCreator.hh
toolbox / task_operations / PreventResiduesFromRepackingOperation.cckinematics / Jump.hh
toolbox / task_operations / PreventResiduesFromRepackingOperation.ccconformation / Residue.hh
toolbox / task_operations / PreventResiduesFromRepackingOperation.ccpack / task / operation / TaskOperations.hh
toolbox / task_operations / PreventResiduesFromRepackingOperation.cctypes.hh
toolbox / task_operations / PreventResiduesFromRepackingOperation.hhpack / task / PackerTask.fwd.hh
toolbox / task_operations / PreventResiduesFromRepackingOperation.hhpose / Pose.fwd.hh
toolbox / task_operations / PreventResiduesFromRepackingOperation.hhtypes.hh
toolbox / task_operations / PreventResiduesFromRepackingOperationCreator.hhpack / task / operation / TaskOperationCreator.hh
match / output / ProcessorFactory.ccpose / Pose.hh
match / output / ProcessorFactory.ccconformation / Residue.hh
match / output / ProcessorFactory.cctypes.hh
match / output / ProcessorFactory.hhtypes.hh
frag_picker / scores / ProfileScore.ccsequence / ScoringScheme.hh
frag_picker / scores / ProfileScore.ccsequence / ScoringSchemeFactory.hh
frag_picker / scores / ProfileScore.ccsequence / SequenceProfile.hh
frag_picker / scores / ProfileScore.cctypes.hh
frag_picker / scores / ProfileScore.hhsequence / ScoringScheme.hh
frag_picker / scores / ProfileScore.hhsequence / SequenceProfile.hh
frag_picker / scores / ProfileScore.hhtypes.hh
frag_picker / scores / ProfileScoreBlosum62.ccchemical / AA.hh
frag_picker / scores / ProfileScoreBlosum62.ccsequence / MatrixScoringScheme.hh
frag_picker / scores / ProfileScoreBlosum62.ccsequence / SequenceProfile.hh
frag_picker / scores / ProfileScoreBlosum62.cctypes.hh
frag_picker / scores / ProfileScoreBlosum62.hhtypes.hh
frag_picker / scores / ProfileScoreDistWeight.ccsequence / SequenceProfile.hh
frag_picker / scores / ProfileScoreDistWeight.cctypes.hh
frag_picker / scores / ProfileScoreDistWeight.hhfragment / SecondaryStructure.hh
frag_picker / scores / ProfileScoreDistWeight.hhsequence / SequenceProfile.hh
frag_picker / scores / ProfileScoreDistWeight.hhtypes.hh
frag_picker / scores / ProfileScoreL1.ccsequence / SequenceProfile.hh
frag_picker / scores / ProfileScoreL1.cctypes.hh
frag_picker / scores / ProfileScoreL1.hhtypes.hh
frag_picker / scores / ProfileScoreStructL1.ccsequence / SequenceProfile.hh
frag_picker / scores / ProfileScoreStructL1.cctypes.hh
frag_picker / scores / ProfileScoreStructL1.hhsequence / SequenceProfile.hh
frag_picker / scores / ProfileScoreStructL1.hhtypes.hh
frag_picker / scores / ProfileScoreSubMatrix.ccchemical / AA.hh
frag_picker / scores / ProfileScoreSubMatrix.ccsequence / MatrixScoringScheme.hh
frag_picker / scores / ProfileScoreSubMatrix.ccsequence / SequenceProfile.hh
frag_picker / scores / ProfileScoreSubMatrix.cctypes.hh
frag_picker / scores / ProfileScoreSubMatrix.hhtypes.hh
simple_moves / ProlineFixMover.ccoptimization / AtomTreeMinimizer.hh
simple_moves / ProlineFixMover.ccoptimization / MinimizerOptions.hh
simple_moves / ProlineFixMover.cckinematics / MoveMap.hh
simple_moves / ProlineFixMover.ccpack / pack_rotamers.hh
simple_moves / ProlineFixMover.ccpack / task / PackerTask.hh
simple_moves / ProlineFixMover.ccscoring / ScoreFunction.fwd.hh
simple_moves / ProlineFixMover.ccscoring / ScoreFunction.hh
simple_moves / ProlineFixMover.ccscoring / ScoreFunctionFactory.hh
simple_moves / ProlineFixMover.ccpack / task / TaskFactory.hh
simple_moves / ProlineFixMover.hhpose / Pose.fwd.hh
frag_picker / scores / ProlinePhiScore.cctypes.hh
frag_picker / scores / ProlinePhiScore.hhtypes.hh
features / ProteinBackboneAtomAtomPairFeatures.ccchemical / AA.hh
features / ProteinBackboneAtomAtomPairFeatures.ccconformation / Conformation.hh
features / ProteinBackboneAtomAtomPairFeatures.ccscoring / Energies.hh
features / ProteinBackboneAtomAtomPairFeatures.ccgraph / Graph.hh
features / ProteinBackboneAtomAtomPairFeatures.ccpose / Pose.hh
features / ProteinBackboneAtomAtomPairFeatures.ccconformation / Residue.hh
features / ProteinBackboneAtomAtomPairFeatures.ccchemical / ResidueType.fwd.hh
features / ProteinBackboneAtomAtomPairFeatures.ccscoring / TenANeighborGraph.hh
features / ProteinBackboneAtomAtomPairFeatures.cctypes.hh
features / ProteinBackboneAtomAtomPairFeatures.hhpose / Pose.fwd.hh
features / ProteinBackboneAtomAtomPairFeatures.hhtypes.hh
features / ProteinBackboneAtomAtomPairFeaturesCreator.hhtypes.hh
features / ProteinBackboneTorsionAngleFeatures.ccpose / Pose.hh
features / ProteinBackboneTorsionAngleFeatures.ccconformation / Residue.hh
features / ProteinBackboneTorsionAngleFeatures.hhpose / Pose.fwd.hh
features / ProteinBackboneTorsionAngleFeatures.hhtypes.hh
features / ProteinBackboneTorsionAngleFeaturesCreator.hhtypes.hh
features / ProteinBondGeometryFeatures.ccchemical / AtomType.hh
features / ProteinBondGeometryFeatures.ccscoring / methods / CartBondedParameters.hh
features / ProteinBondGeometryFeatures.ccscoring / methods / CartesianBondedEnergy.hh
features / ProteinBondGeometryFeatures.cckinematics / FoldTree.hh
features / ProteinBondGeometryFeatures.ccpose / PDBInfo.hh
features / ProteinBondGeometryFeatures.ccpose / Pose.hh
features / ProteinBondGeometryFeatures.ccconformation / Residue.hh
features / ProteinBondGeometryFeatures.ccchemical / ResidueConnection.hh
features / ProteinBondGeometryFeatures.hhscoring / methods / CartesianBondedEnergy.fwd.hh
features / ProteinBondGeometryFeatures.hhpose / Pose.fwd.hh
features / ProteinBondGeometryFeatures.hhtypes.hh
features / ProteinBondGeometryFeaturesCreator.hhtypes.hh
toolbox / task_operations / ProteinCoreResFilter.ccpose / Pose.hh
toolbox / task_operations / ProteinCoreResFilter.cctypes.hh
toolbox / task_operations / ProteinCoreResFilter.hhpose / Pose.fwd.hh
toolbox / task_operations / ProteinCoreResFilter.hhpack / task / operation / ResFilter.hh
toolbox / task_operations / ProteinCoreResFilter.hhtypes.hh
toolbox / task_operations / ProteinCoreResFilterCreator.hhpack / task / operation / ResFilterCreator.hh
toolbox / task_operations / ProteinInterfaceDesignOperation.ccconformation / Conformation.hh
toolbox / task_operations / ProteinInterfaceDesignOperation.ccpack / task / operation / NoRepackDisulfides.hh
toolbox / task_operations / ProteinInterfaceDesignOperation.ccpack / task / operation / OperateOnCertainResidues.hh
toolbox / task_operations / ProteinInterfaceDesignOperation.ccpose / Pose.hh
toolbox / task_operations / ProteinInterfaceDesignOperation.ccpack / task / operation / ResLvlTaskOperations.hh
toolbox / task_operations / ProteinInterfaceDesignOperation.ccpack / task / operation / TaskOperations.hh
toolbox / task_operations / ProteinInterfaceDesignOperation.cctypes.hh
toolbox / task_operations / ProteinInterfaceDesignOperation.hhpack / task / PackerTask.fwd.hh
toolbox / task_operations / ProteinInterfaceDesignOperation.hhpose / Pose.fwd.hh
toolbox / task_operations / ProteinInterfaceDesignOperation.hhtypes.hh
toolbox / task_operations / ProteinInterfaceDesignOperationCreator.hhpack / task / operation / TaskOperationCreator.hh
protein_interface_design / movers / ProteinInterfaceMultiStateDesignMover.ccimport_pose / import_pose.hh
protein_interface_design / movers / ProteinInterfaceMultiStateDesignMover.ccpack / pack_rotamers.hh
protein_interface_design / movers / ProteinInterfaceMultiStateDesignMover.ccpack / task / PackerTask.hh
protein_interface_design / movers / ProteinInterfaceMultiStateDesignMover.ccpose / PDBInfo.hh
protein_interface_design / movers / ProteinInterfaceMultiStateDesignMover.ccpose / Pose.hh
protein_interface_design / movers / ProteinInterfaceMultiStateDesignMover.ccconformation / Residue.hh
protein_interface_design / movers / ProteinInterfaceMultiStateDesignMover.ccpack / rotamer_trials.hh
protein_interface_design / movers / ProteinInterfaceMultiStateDesignMover.ccscoring / ScoreFunction.hh
protein_interface_design / movers / ProteinInterfaceMultiStateDesignMover.ccpack / task / TaskFactory.hh
protein_interface_design / movers / ProteinInterfaceMultiStateDesignMover.ccpack / task / operation / TaskOperations.hh
protein_interface_design / movers / ProteinInterfaceMultiStateDesignMover.hhpack / task / PackerTask.fwd.hh
protein_interface_design / movers / ProteinInterfaceMultiStateDesignMover.hhpose / Pose.fwd.hh
protein_interface_design / movers / ProteinInterfaceMultiStateDesignMover.hhscoring / ScoreFunction.fwd.hh
protein_interface_design / movers / ProteinInterfaceMultiStateDesignMover.hhpack / task / TaskFactory.fwd.hh
enzdes / ProteinLigandInterfaceUpweighterOperationCreator.hhpack / task / operation / TaskOperationCreator.hh
features / ProteinResidueConformationFeatures.ccchemical / AA.hh
features / ProteinResidueConformationFeatures.ccid / AtomID.hh
features / ProteinResidueConformationFeatures.ccpose / Pose.hh
features / ProteinResidueConformationFeatures.ccconformation / Residue.hh
features / ProteinResidueConformationFeatures.cctypes.hh
features / ProteinResidueConformationFeatures.ccpose / util.hh
features / ProteinResidueConformationFeatures.ccconformation / util.hh
features / ProteinResidueConformationFeatures.hhtypes.hh
features / ProteinResidueConformationFeaturesCreator.hhtypes.hh
features / ProteinRMSDFeatures.ccchemical / AA.hh
features / ProteinRMSDFeatures.ccimport_pose / import_pose.hh
features / ProteinRMSDFeatures.ccpose / Pose.hh
features / ProteinRMSDFeatures.ccconformation / Residue.hh
features / ProteinRMSDFeatures.ccscoring / rms_util.hh
features / ProteinRMSDFeatures.ccscoring / rms_util.tmpl.hh
features / ProteinRMSDFeatures.cctypes.hh
features / ProteinRMSDFeatures.ccpose / util.hh
features / ProteinRMSDFeatures.hhpose / Pose.hh
features / ProteinRMSDFeatures.hhtypes.hh
features / ProteinRMSDFeaturesCreator.hhtypes.hh
match / upstream / ProteinSCSampler.ccpack / dunbrack / DunbrackRotamer.hh
match / upstream / ProteinSCSampler.ccchemical / ResidueType.hh
match / upstream / ProteinSCSampler.ccpack / dunbrack / RotamerLibrary.hh
match / upstream / ProteinSCSampler.ccpack / dunbrack / SingleResidueDunbrackLibrary.hh
match / upstream / ProteinSCSampler.hhpack / dunbrack / DunbrackRotamer.fwd.hh
match / upstream / ProteinSCSampler.hhchemical / ResidueType.fwd.hh
features / ProteinSilentReport.ccscoring / Energies.hh
features / ProteinSilentReport.ccpose / Pose.hh
features / ProteinSilentReport.ccscoring / ScoreType.hh
features / ProteinSilentReport.ccpose / util.hh
features / ProteinSilentReport.hhpose / Pose.fwd.hh
features / ProteinSilentReport.hhtypes.hh
match / upstream / ProteinUpstreamBuilder.ccpack / dunbrack / DunbrackRotamer.hh
match / upstream / ProteinUpstreamBuilder.ccconformation / Residue.hh
match / upstream / ProteinUpstreamBuilder.ccchemical / ResidueType.hh
match / upstream / ProteinUpstreamBuilder.ccpack / dunbrack / RotamerLibrary.hh
match / upstream / ProteinUpstreamBuilder.ccpack / dunbrack / RotamerLibraryScratchSpace.hh
match / upstream / ProteinUpstreamBuilder.hhpack / dunbrack / DunbrackRotamer.fwd.hh
match / upstream / ProteinUpstreamBuilder.hhchemical / ResidueType.fwd.hh
match / upstream / ProteinUpstreamBuilder.hhpack / task / RotamerSampleOptions.hh
match / upstream / ProteinUpstreamBuilder.hhtypes.hh
abinitio / Protocol.ccio / silent / SilentFileData.hh
abinitio / Protocol.ccio / silent / SilentStruct.hh
abinitio / Protocol.ccio / silent / SilentStructFactory.hh
abinitio / Protocol.hhscoring / ScoreFunction.hh
abinitio / Protocol.hhio / silent / silent.fwd.hh
features / ProtocolFeatures.ccsvn_version.hh
features / ProtocolFeatures.cctypes.hh
features / ProtocolFeatures.hhpose / Pose.fwd.hh
features / ProtocolFeatures.hhtypes.hh
features / ProtocolFeaturesCreator.hhtypes.hh
scoring / methods / pcs / PseudocontactShiftData.ccpose / Pose.hh
scoring / methods / pcs / PseudocontactShiftData.ccconformation / Residue.hh
scoring / methods / pcs / PseudocontactShiftData.hhpose / Pose.fwd.hh
scoring / methods / pcs / PseudocontactShiftData.hhtypes.hh
scoring / methods / pcs / PseudocontactShiftEnergy.ccpose / datacache / CacheableDataType.hh
scoring / methods / pcs / PseudocontactShiftEnergy.ccscoring / EnergyMap.hh
scoring / methods / pcs / PseudocontactShiftEnergy.ccoptimization / Minimizer.hh
scoring / methods / pcs / PseudocontactShiftEnergy.ccoptimization / MinimizerOptions.hh
scoring / methods / pcs / PseudocontactShiftEnergy.ccpose / Pose.hh
scoring / methods / pcs / PseudocontactShiftEnergy.ccconformation / Residue.hh
scoring / methods / pcs / PseudocontactShiftEnergy.hhpose / Pose.fwd.hh
scoring / methods / pcs / PseudocontactShiftEnergy.hhscoring / ScoreType.hh
scoring / methods / pcs / PseudocontactShiftEnergy.hhscoring / methods / WholeStructureEnergy.hh
topology_broker / PseudocontactShiftEnergyController.ccscoring / constraints / Constraint.fwd.hh
topology_broker / PseudocontactShiftEnergyController.ccscoring / methods / EnergyMethod.hh
topology_broker / PseudocontactShiftEnergyController.ccscoring / ScoreType.hh
topology_broker / PseudocontactShiftEnergyController.hhpose / Pose.fwd.hh
topology_broker / PseudocontactShiftEnergyController.hhscoring / ScoreFunction.fwd.hh
scoring / methods / pcs / PseudocontactShiftEnergyCreator.hhscoring / methods / EnergyMethodCreator.hh
scoring / methods / pcs / PseudocontactShiftInput.hhtypes.hh
scoring / methods / pcs / PseudocontactShiftTensor.hhtypes.hh
frag_picker / scores / Psi.cctypes.hh
frag_picker / scores / Psi.hhtypes.hh
moves / PyMolMover.ccscoring / Energies.hh
moves / PyMolMover.ccpose / PDBInfo.hh
moves / PyMolMover.ccpose / Pose.hh
moves / PyMolMover.ccscoring / ScoreTypeManager.hh
moves / PyMolMover.hhpose / signals / GeneralEvent.hh
moves / PyMolMover.hhpose / Pose.fwd.hh
moves / PyMolMover.hhscoring / ScoreType.hh
toolbox / PyReturnValuePolicyTest.hhpose / Pose.hh
toolbox / PyReturnValuePolicyTest.hhscoring / ScoreFunction.hh
toolbox / PyReturnValuePolicyTest.hhscoring / ScoreFunctionFactory.hh
toolbox / PyReturnValuePolicyTest.hhtypes.hh
qsar / qsarMap.ccchemical / sdf / MolData.hh
qsar / qsarMap.ccconformation / Residue.hh
qsar / qsarMap.hhchemical / sdf / MolData.fwd.hh
qsar / qsarMap.hhconformation / Residue.fwd.hh
qsar / qsarMap.hhtypes.hh
qsar / qsarMover.ccconformation / Conformation.hh
qsar / qsarMover.ccpose / Pose.hh
qsar / qsarMover.ccconformation / Residue.hh
qsar / qsarMover.ccpose / util.hh
qsar / qsarMover.hhtypes.hh
qsar / qsarOptFunc.hhoptimization / Multifunc.hh
frag_picker / quota / QuotaCollector.ccfragment / SecondaryStructure.hh
frag_picker / quota / QuotaCollector.hhfragment / SecondaryStructure.fwd.hh
frag_picker / quota / QuotaConfig.cctypes.hh
frag_picker / quota / QuotaConfig.hhtypes.hh
frag_picker / quota / QuotaPool.hhtypes.hh
frag_picker / quota / QuotaSelector.cctypes.hh
frag_picker / quota / QuotaSelector.hhtypes.hh
features / RadiusOfGyrationFeatures.ccscoring / methods / RG_Energy_Fast.hh
features / RadiusOfGyrationFeatures.cctypes.hh
features / RadiusOfGyrationFeatures.hhpose / Pose.fwd.hh
features / RadiusOfGyrationFeatures.hhtypes.hh
features / RadiusOfGyrationFeaturesCreator.hhtypes.hh
relax / Ramady.ccoptimization / AtomTreeMinimizer.hh
relax / Ramady.ccscoring / constraints / CoordinateConstraint.hh
relax / Ramady.ccscoring / Energies.hh
relax / Ramady.cckinematics / FoldTree.hh
relax / Ramady.cckinematics / Jump.hh
relax / Ramady.ccoptimization / MinimizerOptions.hh
relax / Ramady.cckinematics / MoveMap.hh
relax / Ramady.ccpose / Pose.hh
relax / Ramady.ccconformation / Residue.hh
relax / Ramady.ccconformation / ResidueFactory.hh
relax / Ramady.ccchemical / ResidueTypeSet.hh
relax / Ramady.ccscoring / rms_util.hh
relax / Ramady.ccscoring / ScoreFunction.hh
relax / Ramady.hhpose / Pose.fwd.hh
relax / Ramady.hhtypes.hh
frag_picker / scores / RamaScore.ccfragment / SecondaryStructure.fwd.hh
frag_picker / scores / RamaScore.cctypes.hh
frag_picker / scores / RamaScore.hhfragment / SecondaryStructure.fwd.hh
frag_picker / scores / RamaScore.hhtypes.hh
moves / RampingMover.ccscoring / ScoreFunction.hh
moves / RampingMover.ccscoring / ScoreTypeManager.hh
moves / RampingMover.hhscoring / EnergyMap.hh
moves / RampingMover.hhpose / Pose.fwd.hh
moves / RampingMover.hhscoring / ScoreFunction.fwd.hh
moves / RampingMover.hhscoring / ScoreType.hh
moves / RampingMover.hhtypes.hh
ligand_docking / RandomConformerMover.ccgraph / Graph.hh
ligand_docking / RandomConformerMover.ccpack / task / PackerTask.hh
ligand_docking / RandomConformerMover.ccpose / Pose.hh
ligand_docking / RandomConformerMover.ccconformation / Residue.hh
ligand_docking / RandomConformerMover.ccchemical / ResidueType.hh
ligand_docking / RandomConformerMover.ccpack / dunbrack / RotamerLibrary.hh
ligand_docking / RandomConformerMover.ccscoring / ScoreFunction.hh
ligand_docking / RandomConformerMover.ccpack / task / TaskFactory.hh
ligand_docking / RandomConformers.ccconformation / Conformation.hh
ligand_docking / RandomConformers.ccpose / Pose.hh
ligand_docking / RandomConformers.cctypes.hh
ligand_docking / RandomConformers.ccpose / util.hh
protein_interface_design / movers / RandomMutation.cckinematics / Jump.hh
protein_interface_design / movers / RandomMutation.ccpack / task / PackerTask.hh
protein_interface_design / movers / RandomMutation.ccpose / Pose.hh
protein_interface_design / movers / RandomMutation.ccconformation / Residue.hh
protein_interface_design / movers / RandomMutation.ccchemical / ResidueType.hh
protein_interface_design / movers / RandomMutation.ccscoring / ScoreFunction.hh
protein_interface_design / movers / RandomMutation.ccpack / task / TaskFactory.hh
protein_interface_design / movers / RandomMutation.ccpose / symmetry / util.hh
protein_interface_design / movers / RandomMutation.hhpack / task / PackerTask.fwd.hh
protein_interface_design / movers / RandomMutation.hhpose / Pose.fwd.hh
protein_interface_design / movers / RandomMutation.hhscoring / ScoreFunction.fwd.hh
protein_interface_design / movers / RandomMutation.hhpack / task / TaskFactory.fwd.hh
protein_interface_design / movers / RandomMutation.hhtypes.hh
jumping / RandomSheetBuilder.ccfragment / SecondaryStructure.hh
jumping / RandomSheetBuilder.cctypes.hh
jumping / RandomSheetBuilder.hhkinematics / FoldTree.fwd.hh
jumping / RandomSheetBuilder.hhscoring / dssp / PairingsList.hh
jumping / RandomSheetBuilder.hhpose / Pose.fwd.hh
jumping / RandomSheetBuilder.hhfragment / SecondaryStructure.fwd.hh
jumping / RandomSheetBuilder.hhtypes.hh
simple_filters / RangeFilter.ccpose / Pose.hh
simple_filters / RangeFilter.cctypes.hh
simple_filters / RangeFilter.hhpose / Pose.fwd.hh
simple_moves / rational_mc / RationalMonteCarlo.ccpose / Pose.hh
simple_moves / rational_mc / RationalMonteCarlo.ccscoring / ScoreFunction.hh
simple_moves / rational_mc / RationalMonteCarlo.hhpose / Pose.fwd.hh
simple_moves / rational_mc / RationalMonteCarlo.hhscoring / ScoreFunction.fwd.hh
simple_moves / rational_mc / RationalMonteCarlo.hhtypes.hh
rigid / RB_geometry.cckinematics / FoldTree.hh
rigid / RB_geometry.ccpose / Pose.hh
rigid / RB_geometry.ccconformation / Residue.hh
rigid / RB_geometry.hhpose / Pose.fwd.hh
rigid / RB_geometry.hhtypes.hh
rbsegment_relax / RBSegment.ccid / SequenceMapping.hh
rbsegment_relax / RBSegment.hhid / SequenceMapping.fwd.hh
rbsegment_relax / RBSegment.hhtypes.hh
rbsegment_relax / RBSegmentMover.ccid / AtomID.hh
rbsegment_relax / RBSegmentMover.ccscoring / constraints / ConstraintSet.fwd.hh
rbsegment_relax / RBSegmentMover.ccpose / Pose.hh
rbsegment_relax / RBSegmentMover.ccconformation / Residue.hh
rbsegment_relax / RBSegmentMover.hhpose / Pose.fwd.hh
rbsegment_relax / RBSegmentMover.hhtypes.hh
rbsegment_relax / RBSegmentRelax.ccoptimization / AtomTreeMinimizer.hh
rbsegment_relax / RBSegmentRelax.ccscoring / constraints / ConstraintSet.fwd.hh
rbsegment_relax / RBSegmentRelax.cckinematics / Edge.hh
rbsegment_relax / RBSegmentRelax.cckinematics / FoldTree.hh
rbsegment_relax / RBSegmentRelax.ccfragment / FragSet.hh
rbsegment_relax / RBSegmentRelax.ccoptimization / MinimizerOptions.hh
rbsegment_relax / RBSegmentRelax.cckinematics / MoveMap.hh
rbsegment_relax / RBSegmentRelax.ccpack / task / PackerTask.hh
rbsegment_relax / RBSegmentRelax.ccpose / Pose.hh
rbsegment_relax / RBSegmentRelax.ccscoring / ScoreFunction.hh
rbsegment_relax / RBSegmentRelax.ccscoring / ScoreFunctionFactory.hh
rbsegment_relax / RBSegmentRelax.ccid / SequenceMapping.hh
rbsegment_relax / RBSegmentRelax.ccpack / task / TaskFactory.hh
rbsegment_relax / RBSegmentRelax.cctypes.hh
rbsegment_relax / RBSegmentRelax.ccscoring / electron_density / util.hh
rbsegment_relax / RBSegmentRelax.ccpose / util.hh
rbsegment_relax / RBSegmentRelax.hhfragment / FragSet.fwd.hh
rbsegment_relax / RBSegmentRelax.hhkinematics / MoveMap.fwd.hh
rbsegment_relax / RBSegmentRelax.hhpose / Pose.fwd.hh
rbsegment_relax / RBSegmentRelax.hhscoring / ScoreFunction.fwd.hh
rbsegment_relax / RBSegmentRelax.hhtypes.hh
rbsegment_relax / RBSegmentRelax_main.ccchemical / ChemicalManager.fwd.hh
rbsegment_relax / RBSegmentRelax_main.cckinematics / FoldTree.hh
rbsegment_relax / RBSegmentRelax_main.ccfragment / FragSet.hh
rbsegment_relax / RBSegmentRelax_main.ccimport_pose / import_pose.hh
rbsegment_relax / RBSegmentRelax_main.cckinematics / Jump.hh
rbsegment_relax / RBSegmentRelax_main.ccpose / Pose.hh
rbsegment_relax / RBSegmentRelax_main.ccscoring / ScoreFunction.hh
rbsegment_relax / RBSegmentRelax_main.ccscoring / ScoreFunctionFactory.hh
rbsegment_relax / RBSegmentRelax_main.ccio / silent / SilentStruct.hh
rbsegment_relax / RBSegmentRelax_main.ccio / silent / SilentStructFactory.hh
rbsegment_relax / RBSegmentRelax_main.ccutil / SwitchResidueTypeSet.hh
rbsegment_relax / RBSegmentRelax_main.cctypes.hh
rbsegment_relax / RBSegmentRelax_main.ccpose / util.hh
rbsegment_relax / RBSegmentRelax_main.hhscoring / ScoreFunction.fwd.hh
simple_filters / RDC_Evaluator.ccpose / Pose.hh
simple_filters / RDC_Evaluator.ccscoring / ResidualDipolarCoupling.hh
simple_filters / RDC_Evaluator.ccscoring / methods / ResidualDipolarCouplingEnergy.hh
simple_filters / RDC_Evaluator.ccio / silent / SilentStruct.hh
simple_filters / RDC_Evaluator.hhpose / Pose.fwd.hh
simple_filters / RDC_Evaluator.hhscoring / ResidualDipolarCoupling.hh
simple_filters / RDC_Evaluator.hhscoring / rms_util.hh
simple_filters / RDC_Evaluator.hhio / silent / silent.fwd.hh
simple_filters / RdcEvaluatorCreator.ccchemical / ResidueType.hh
simple_filters / RdcEvaluatorCreator.ccio / silent / silent.fwd.hh
simple_filters / RdcEvaluatorCreator.ccio / silent / SilentStruct.hh
simple_filters / RdcEvaluatorCreator.hhtypes.hh
frag_picker / scores / RDCScore.ccpose / annotated_sequence.hh
frag_picker / scores / RDCScore.ccchemical / ChemicalManager.hh
frag_picker / scores / RDCScore.cckinematics / Jump.hh
frag_picker / scores / RDCScore.ccpose / Pose.hh
frag_picker / scores / RDCScore.ccscoring / ResidualDipolarCoupling.hh
frag_picker / scores / RDCScore.hhscoring / ResidualDipolarCoupling.hh
frag_picker / scores / RDCScore.hhtypes.hh
frag_picker / scores / RDCScore_Gront.ccscoring / ResidualDipolarCoupling.hh
frag_picker / scores / RDCScore_Gront.hhscoring / ResidualDipolarCoupling.fwd.hh
simple_filters / RdcSelectEvaluatorCreator.ccio / silent / silent.fwd.hh
simple_filters / RdcSelectEvaluatorCreator.ccio / silent / SilentStruct.hh
simple_filters / RdcSelectEvaluatorCreator.hhtypes.hh
simple_filters / RdcTargetEvaluatorCreator.ccimport_pose / import_pose.hh
simple_filters / RdcTargetEvaluatorCreator.ccpose / Pose.hh
simple_filters / RdcTargetEvaluatorCreator.ccio / silent / silent.fwd.hh
simple_filters / RdcTargetEvaluatorCreator.ccio / silent / SilentStruct.hh
simple_filters / RdcTargetEvaluatorCreator.hhtypes.hh
protein_interface_design / read_patchdock.ccchemical / ChemicalManager.hh
protein_interface_design / read_patchdock.ccconformation / Conformation.hh
protein_interface_design / read_patchdock.cckinematics / FoldTree.hh
protein_interface_design / read_patchdock.ccimport_pose / import_pose.hh
protein_interface_design / read_patchdock.ccpose / Pose.hh
protein_interface_design / read_patchdock.hhpose / Pose.fwd.hh
protein_interface_design / read_patchdock.hhtypes.hh
toolbox / task_operations / ReadResfileFromDB.ccpack / task / ResfileReader.hh
toolbox / task_operations / ReadResfileFromDB.ccpack / task / operation / TaskOperation.hh
toolbox / task_operations / ReadResfileFromDB.hhpack / task / PackerTask.fwd.hh
toolbox / task_operations / ReadResfileFromDB.hhpose / Pose.fwd.hh
toolbox / task_operations / ReadResfileFromDB.hhpack / task / operation / TaskOperation.hh
toolbox / task_operations / ReadResfileFromDBCreator.hhpack / task / operation / TaskOperationCreator.hh
comparative_modeling / RecoverSideChainsMover.ccpose / Pose.hh
comparative_modeling / RecoverSideChainsMover.ccid / SequenceMapping.hh
comparative_modeling / RecoverSideChainsMover.cctypes.hh
comparative_modeling / RecoverSideChainsMover.hhpose / Pose.fwd.hh
antibody2 / RefineBetaBarrel.ccpose / PDBInfo.hh
antibody2 / RefineBetaBarrel.ccconformation / Residue.hh
antibody2 / RefineBetaBarrel.ccchemical / ResidueType.hh
antibody2 / RefineBetaBarrel.ccscoring / ScoreFunction.hh
antibody2 / RefineBetaBarrel.ccscoring / ScoreFunctionFactory.hh
antibody2 / RefineBetaBarrel.ccpose / util.hh
antibody2 / RefineBetaBarrel.ccchemical / VariantType.hh
antibody2 / RefineBetaBarrel.hhscoring / ScoreFunction.fwd.hh
antibody2 / RefineBetaBarrel.hhpack / task / TaskFactory.fwd.hh
antibody2 / RefineOneCDRLoop.ccscoring / constraints / ConstraintFactory.hh
antibody2 / RefineOneCDRLoop.ccscoring / constraints / ConstraintIO.hh
antibody2 / RefineOneCDRLoop.ccscoring / Energies.hh
antibody2 / RefineOneCDRLoop.ccpose / Pose.hh
antibody2 / RefineOneCDRLoop.ccscoring / ScoreFunction.hh
antibody2 / RefineOneCDRLoop.ccscoring / ScoreFunctionFactory.hh
antibody2 / RefineOneCDRLoop.ccpack / task / TaskFactory.hh
antibody2 / RefineOneCDRLoop.ccchemical / VariantType.hh
antibody2 / RefineOneCDRLoop.hhpose / Pose.hh
antibody2 / RefineOneCDRLoop.hhscoring / ScoreFunction.hh
antibody2 / RefineOneCDRLoop.hhpack / task / TaskFactory.hh
antibody2 / RefineOneCDRLoopCentroid.cckinematics / FoldTree.hh
antibody2 / RefineOneCDRLoopCentroid.cckinematics / MoveMap.hh
antibody2 / RefineOneCDRLoopCentroid.ccpose / PDBInfo.hh
antibody2 / RefineOneCDRLoopCentroid.ccpose / Pose.hh
antibody2 / RefineOneCDRLoopCentroid.ccio / pdb / pose_io.hh
antibody2 / RefineOneCDRLoopCentroid.ccscoring / ScoreFunction.hh
antibody2 / RefineOneCDRLoopCentroid.ccscoring / ScoreFunctionFactory.hh
antibody2 / RefineOneCDRLoopCentroid.ccpose / util.hh
antibody2 / RefineOneCDRLoopCentroid.ccchemical / VariantType.hh
antibody2 / RefineOneCDRLoopCentroid.hhkinematics / MoveMap.fwd.hh
antibody2 / RefineOneCDRLoopCentroid.hhpose / Pose.hh
antibody2 / RefineOneCDRLoopCentroid.hhscoring / ScoreFunction.fwd.hh
nonlocal / Region.cctypes.hh
nonlocal / Region.hhtypes.hh
forge / build / RelativeConnectRight.ccpose / Pose.hh
simple_filters / RelativePoseFilter.ccchemical / AA.hh
simple_filters / RelativePoseFilter.ccconformation / Conformation.hh
simple_filters / RelativePoseFilter.ccimport_pose / import_pose.hh
simple_filters / RelativePoseFilter.ccpack / pack_rotamers.hh
simple_filters / RelativePoseFilter.ccpack / task / PackerTask.hh
simple_filters / RelativePoseFilter.ccpose / PDBInfo.hh
simple_filters / RelativePoseFilter.ccpose / Pose.hh
simple_filters / RelativePoseFilter.ccscoring / ScoreFunction.hh
simple_filters / RelativePoseFilter.ccpose / selection.hh
simple_filters / RelativePoseFilter.ccconformation / symmetry / SymmData.hh
simple_filters / RelativePoseFilter.ccconformation / symmetry / SymmDataFactory.hh
simple_filters / RelativePoseFilter.ccpack / task / TaskFactory.hh
simple_filters / RelativePoseFilter.ccpack / task / operation / TaskOperations.hh
simple_filters / RelativePoseFilter.ccpose / symmetry / util.hh
simple_filters / RelativePoseFilter.hhpose / Pose.fwd.hh
simple_filters / RelativePoseFilter.hhscoring / ScoreFunction.fwd.hh
simple_filters / RelativePoseFilter.hhconformation / symmetry / SymmData.fwd.hh
protein_interface_design / filters / RelativeSegmentFilter.ccimport_pose / import_pose.hh
protein_interface_design / filters / RelativeSegmentFilter.ccpose / Pose.hh
protein_interface_design / filters / RelativeSegmentFilter.cctypes.hh
protein_interface_design / filters / RelativeSegmentFilter.hhpose / Pose.fwd.hh
protein_interface_design / filters / RelativeSegmentFilter.hhtypes.hh
forge / build / RelativeSequencePosition.hhtypes.hh
relax / relax_main.ccimport_pose / import_pose.hh
relax / relax_main.ccpose / Pose.hh
relax / relax_main.ccscoring / constraints / util.hh
relax / RelaxProtocolBase.ccscoring / constraints / BoundConstraint.hh
relax / RelaxProtocolBase.ccscoring / constraints / CoordinateConstraint.hh
relax / RelaxProtocolBase.cckinematics / FoldTree.hh
relax / RelaxProtocolBase.ccscoring / constraints / HarmonicFunc.hh
relax / RelaxProtocolBase.cckinematics / MoveMap.hh
relax / RelaxProtocolBase.ccpack / task / PackerTask.hh
relax / RelaxProtocolBase.ccpose / PDBInfo.hh
relax / RelaxProtocolBase.ccpose / Pose.hh
relax / RelaxProtocolBase.ccio / pdb / pose_io.hh
relax / RelaxProtocolBase.ccconformation / Residue.hh
relax / RelaxProtocolBase.ccconformation / ResidueFactory.hh
relax / RelaxProtocolBase.ccchemical / ResidueTypeSet.hh
relax / RelaxProtocolBase.ccscoring / ScoreFunction.hh
relax / RelaxProtocolBase.ccscoring / ScoreFunctionFactory.hh
relax / RelaxProtocolBase.ccscoring / ScoreType.hh
relax / RelaxProtocolBase.ccio / silent / SilentFileData.hh
relax / RelaxProtocolBase.ccio / silent / SilentStruct.hh
relax / RelaxProtocolBase.ccio / silent / SilentStructFactory.hh
relax / RelaxProtocolBase.ccpack / task / TaskFactory.hh
relax / RelaxProtocolBase.ccpose / util.hh
relax / RelaxProtocolBase.ccsequence / util.hh
relax / RelaxProtocolBase.hhkinematics / MoveMap.fwd.hh
relax / RelaxProtocolBase.hhpose / Pose.fwd.hh
relax / RelaxProtocolBase.hhscoring / ScoreFunction.fwd.hh
relax / RelaxProtocolBase.hhpack / task / TaskFactory.fwd.hh
forge / remodel / RemodelAccumulator.ccimport_pose / import_pose.hh
forge / remodel / RemodelAccumulator.ccscoring / constraints / ResidueTypeLinkingConstraint.hh
forge / remodel / RemodelAccumulator.ccscoring / ScoreFunctionFactory.hh
forge / remodel / RemodelAccumulator.hhscoring / ScoreFunction.fwd.hh
forge / remodel / RemodelAccumulator.hhscoring / ScoreFunctionFactory.hh
forge / remodel / RemodelConstraintGenerator.ccscoring / constraints / Constraint.hh
forge / remodel / RemodelConstraintGenerator.ccpose / Pose.hh
forge / remodel / RemodelConstraintGenerator.ccid / SequenceMapping.hh
forge / remodel / RemodelConstraintGenerator.hhscoring / constraints / Constraint.fwd.hh
forge / remodel / RemodelConstraintGenerator.hhpose / Pose.fwd.hh
forge / remodel / RemodelConstraintGenerator.hhid / SequenceMapping.fwd.hh
forge / remodel / RemodelData.ccscoring / dssp / Dssp.hh
forge / remodel / RemodelData.ccimport_pose / import_pose.hh
forge / remodel / RemodelData.ccpack / task / ResfileReader.fwd.hh
forge / remodel / RemodelData.ccpack / task / ResfileReader.hh
forge / remodel / RemodelData.hhchemical / AA.hh
forge / remodel / RemodelData.hhkinematics / MoveMap.hh
forge / remodel / RemodelData.hhpose / Pose.hh
forge / remodel / RemodelDesignMover.ccpose / metrics / CalculatorFactory.hh
forge / remodel / RemodelDesignMover.ccutil / disulfide_util.hh
forge / remodel / RemodelDesignMover.ccscoring / disulfides / DisulfideMatchingPotential.hh
forge / remodel / RemodelDesignMover.cckinematics / MoveMap.hh
forge / remodel / RemodelDesignMover.ccpack / pack_rotamers.hh
forge / remodel / RemodelDesignMover.ccpack / task / ResfileReader.hh
forge / remodel / RemodelDesignMover.ccconformation / Residue.hh
forge / remodel / RemodelDesignMover.ccpack / rotamer_set / RotamerLinks.hh
forge / remodel / RemodelDesignMover.ccscoring / ScoreFunction.hh
forge / remodel / RemodelDesignMover.ccpack / task / TaskFactory.hh
forge / remodel / RemodelDesignMover.ccconformation / util.hh
forge / remodel / RemodelDesignMover.hhkinematics / MoveMap.hh
forge / remodel / RemodelDesignMover.hhpose / Pose.fwd.hh
forge / remodel / RemodelDesignMover.hhscoring / ScoreFunction.fwd.hh
forge / remodel / RemodelEnzdesCstModule.ccchemical / ChemicalManager.hh
forge / remodel / RemodelEnzdesCstModule.ccscoring / constraints / Constraint.fwd.hh
forge / remodel / RemodelEnzdesCstModule.ccchemical / ResidueType.hh
forge / remodel / RemodelEnzdesCstModule.ccchemical / ResidueTypeSet.hh
forge / remodel / RemodelEnzdesCstModule.ccscoring / ScoreFunction.hh
forge / remodel / RemodelEnzdesCstModule.ccscoring / ScoreFunctionFactory.hh
forge / remodel / RemodelEnzdesCstModule.hhpose / Pose.fwd.hh
forge / remodel / RemodelEnzdesCstModule.hhscoring / ScoreFunction.fwd.hh
forge / remodel / RemodelLoopMover.ccutil / ABEGOManager.hh
forge / remodel / RemodelLoopMover.ccchemical / AtomType.hh
forge / remodel / RemodelLoopMover.ccchemical / ChemicalManager.hh
forge / remodel / RemodelLoopMover.ccconformation / Conformation.hh
forge / remodel / RemodelLoopMover.ccscoring / Energies.hh
forge / remodel / RemodelLoopMover.ccio / pdb / file_data.hh
forge / remodel / RemodelLoopMover.cckinematics / FoldTree.hh
forge / remodel / RemodelLoopMover.ccfragment / FragSet.hh
forge / remodel / RemodelLoopMover.ccpose / Pose.hh
forge / remodel / RemodelLoopMover.ccconformation / Residue.hh
forge / remodel / RemodelLoopMover.ccconformation / ResidueFactory.hh
forge / remodel / RemodelLoopMover.ccscoring / constraints / ResidueTypeLinkingConstraint.hh
forge / remodel / RemodelLoopMover.ccchemical / ResidueTypeSet.hh
forge / remodel / RemodelLoopMover.ccscoring / ScoreFunction.hh
forge / remodel / RemodelLoopMover.ccscoring / ScoreFunctionFactory.hh
forge / remodel / RemodelLoopMover.ccid / TorsionID.hh
forge / remodel / RemodelLoopMover.ccpose / symmetry / util.hh
forge / remodel / RemodelLoopMover.ccpose / util.hh
forge / remodel / RemodelLoopMover.hhfragment / FragSet.fwd.hh
forge / remodel / RemodelLoopMover.hhkinematics / MoveMap.hh
forge / remodel / RemodelLoopMover.hhpose / Pose.fwd.hh
forge / remodel / RemodelLoopMover.hhpose / Pose.hh
forge / remodel / RemodelLoopMover.hhscoring / ScoreFunction.fwd.hh
forge / remodel / RemodelMover.ccchemical / AA.hh
forge / remodel / RemodelMover.ccpose / annotated_sequence.hh
forge / remodel / RemodelMover.ccpose / datacache / CacheableObserverType.hh
forge / remodel / RemodelMover.ccpose / metrics / CalculatorFactory.hh
forge / remodel / RemodelMover.ccscoring / constraints / ConstraintSet.hh
forge / remodel / RemodelMover.ccscoring / dssp / Dssp.hh
forge / remodel / RemodelMover.ccscoring / Energies.hh
forge / remodel / RemodelMover.cckinematics / FoldTree.hh
forge / remodel / RemodelMover.cckinematics / MoveMap.hh
forge / remodel / RemodelMover.ccpack / task / operation / NoRepackDisulfides.hh
forge / remodel / RemodelMover.ccpose / datacache / ObserverCache.hh
forge / remodel / RemodelMover.ccpack / task / operation / OperateOnCertainResidues.hh
forge / remodel / RemodelMover.ccpack / task / PackerTask.hh
forge / remodel / RemodelMover.ccpose / PDBInfo.hh
forge / remodel / RemodelMover.ccpose / Pose.hh
forge / remodel / RemodelMover.ccpose / Remarks.hh
forge / remodel / RemodelMover.ccchemical / ResidueTypeSet.hh
forge / remodel / RemodelMover.ccpack / task / operation / ResLvlTaskOperations.hh
forge / remodel / RemodelMover.ccscoring / ScoreFunctionFactory.hh
forge / remodel / RemodelMover.ccutil / SwitchResidueTypeSet.hh
forge / remodel / RemodelMover.ccpack / task / TaskFactory.hh
forge / remodel / RemodelMover.ccpack / task / operation / TaskOperations.hh
forge / remodel / RemodelMover.ccpose / util.hh
forge / remodel / RemodelMover.hhpose / Pose.fwd.hh
forge / remodel / RemodelMover.hhscoring / ScoreFunction.fwd.hh
forge / remodel / RemodelMover.hhpack / task / TaskFactory.fwd.hh
forge / remodel / RemodelMover.hhtypes.hh
forge / remodel / RemodelRotamerLinks.ccpack / task / PackerTask.hh
forge / remodel / RemodelRotamerLinks.ccpose / PDBInfo.hh
forge / remodel / RemodelRotamerLinks.ccpose / Pose.hh
forge / remodel / RemodelRotamerLinks.ccchemical / ResidueType.hh
forge / remodel / RemodelRotamerLinks.ccpack / rotamer_set / RotamerLinks.hh
forge / remodel / RemodelRotamerLinks.hhpack / task / operation / TaskOperation.hh
forge / remodel / RemodelRotamerLinksCreator.hhpack / task / operation / TaskOperationCreator.hh
forge / remodel / RemodelWorkingSet.ccfragment / ConstantLengthFragSet.fwd.hh
forge / remodel / RemodelWorkingSet.cckinematics / FoldTree.hh
forge / remodel / RemodelWorkingSet.ccfragment / Frame.fwd.hh
forge / remodel / RemodelWorkingSet.cckinematics / Jump.hh
forge / remodel / RemodelWorkingSet.ccfragment / OrderedFragSet.fwd.hh
forge / remodel / RemodelWorkingSet.ccpose / Pose.hh
forge / remodel / RemodelWorkingSet.ccpack / task / ResfileReader.fwd.hh
forge / remodel / RemodelWorkingSet.ccpack / task / ResfileReader.hh
forge / remodel / RemodelWorkingSet.ccchemical / ResidueType.hh
forge / remodel / RemodelWorkingSet.ccpack / task / TaskFactory.hh
forge / remodel / RemodelWorkingSet.hhpack / task / PackerTask.hh
forge / remodel / RemodelWorkingSet.hhpose / Pose.hh
forge / constraints / RemoveCsts.ccscoring / constraints / Constraint.hh
forge / constraints / RemoveCsts.ccscoring / constraints / ConstraintSet.hh
forge / constraints / RemoveCsts.ccpose / Pose.hh
forge / constraints / RemoveCsts.hhpose / Pose.fwd.hh
forge / constraints / RemoveCsts.hhtypes.hh
qsar / RenderGridsToKinemage.ccpose / Pose.hh
protein_interface_design / movers / RepackMinimize.ccpack / pack_rotamers.hh
protein_interface_design / movers / RepackMinimize.ccpack / task / PackerTask.hh
protein_interface_design / movers / RepackMinimize.ccpose / Pose.hh
protein_interface_design / movers / RepackMinimize.ccscoring / symmetry / SymmetricScoreFunction.hh
protein_interface_design / movers / RepackMinimize.ccpack / task / TaskFactory.hh
protein_interface_design / movers / RepackMinimize.hhpose / Pose.fwd.hh
protein_interface_design / movers / RepackMinimize.hhtypes.hh
simple_moves / RepackSidechainsMover.ccid / AtomID_Mask.fwd.hh
simple_moves / RepackSidechainsMover.ccpack / pack_missing_sidechains.hh
simple_moves / RepackSidechainsMover.ccpack / pack_rotamers.hh
simple_moves / RepackSidechainsMover.ccpack / task / PackerTask.hh
simple_moves / RepackSidechainsMover.ccpose / Pose.hh
simple_moves / RepackSidechainsMover.ccscoring / ScoreFunction.hh
simple_moves / RepackSidechainsMover.ccpack / task / TaskFactory.hh
simple_moves / RepackSidechainsMover.ccpose / util.hh
simple_moves / RepackSidechainsMover.ccpose / util.tmpl.hh
simple_moves / RepackSidechainsMover.hhpose / Pose.fwd.hh
simple_moves / RepackSidechainsMover.hhscoring / ScoreFunction.hh
simple_moves / RepackSidechainsMover.hhtypes.hh
loops / loop_mover / refine / RepackTrial.ccpack / pack_rotamers.hh
loops / loop_mover / refine / RepackTrial.ccpack / task / PackerTask.hh
loops / loop_mover / refine / RepackTrial.ccscoring / ScoreFunction.hh
loops / loop_mover / refine / RepackTrial.ccpack / task / TaskFactory.hh
loops / loop_mover / refine / RepackTrial.hhoptimization / AtomTreeMinimizer.fwd.hh
loops / loop_mover / refine / RepackTrial.hhpack / task / PackerTask.fwd.hh
moves / RepeatMover.hhpose / Pose.fwd.hh
qsar / scoring_grid / RepGrid.ccpose / Pose.hh
qsar / scoring_grid / RepGrid.ccconformation / Residue.hh
moves / ReplicaExchangeMC.hhtypes.hh
filters / ReplicateFilter.ccpose / Pose.hh
filters / ReplicateFilter.cctypes.hh
filters / ReplicateFilter.hhpose / Pose.fwd.hh
features / Report.hhpose / Pose.fwd.hh
features / Report.hhtypes.hh
simple_filters / ReportFilter.hhpose / Pose.fwd.hh
simple_filters / ReportFilter.hhscoring / ScoreFunction.hh
simple_filters / ReportFilter.hhtypes.hh
protein_interface_design / ReportPSSMDifference.ccchemical / AA.hh
protein_interface_design / ReportPSSMDifference.ccpack / task / PackerTask.hh
protein_interface_design / ReportPSSMDifference.ccpose / Pose.hh
protein_interface_design / ReportPSSMDifference.ccconformation / Residue.hh
protein_interface_design / ReportPSSMDifference.cctypes.hh
protein_interface_design / ReportPSSMDifference.hhchemical / AA.hh
protein_interface_design / ReportPSSMDifference.hhpack / task / PackerTask.fwd.hh
protein_interface_design / ReportPSSMDifference.hhpose / Pose.fwd.hh
protein_interface_design / ReportPSSMDifference.hhtypes.hh
features / ReportToDB.ccio / silent / BinaryProteinSilentStruct.hh
features / ReportToDB.ccconformation / Conformation.hh
features / ReportToDB.cckinematics / Jump.hh
features / ReportToDB.ccpack / task / PackerTask.hh
features / ReportToDB.ccpose / PDBInfo.hh
features / ReportToDB.ccpose / Pose.hh
features / ReportToDB.ccconformation / Residue.hh
features / ReportToDB.ccchemical / ResidueType.hh
features / ReportToDB.ccscoring / ScoreFunctionFactory.hh
features / ReportToDB.ccpack / task / TaskFactory.hh
features / ReportToDB.ccpose / symmetry / util.hh
features / ReportToDB.hhpose / Pose.fwd.hh
features / ReportToDB.hhpack / task / TaskFactory.fwd.hh
features / ReportToDB.hhtypes.hh
simple_moves / RepulsiveOnlyMover.ccchemical / AtomType.hh
simple_moves / RepulsiveOnlyMover.ccpose / Pose.hh
simple_moves / RepulsiveOnlyMover.ccconformation / Residue.hh
simple_moves / RepulsiveOnlyMover.ccchemical / ResidueTypeSet.hh
simple_moves / RepulsiveOnlyMover.ccpose / util.hh
simple_moves / RepulsiveOnlyMover.ccchemical / VariantType.hh
simple_moves / RepulsiveOnlyMover.hhpose / Pose.fwd.hh
outputter / ResFileOutputter.ccpack / task / PackerTask.hh
outputter / ResFileOutputter.ccpose / PDBInfo.hh
outputter / ResFileOutputter.ccconformation / Residue.hh
outputter / ResFileOutputter.ccpack / task / TaskFactory.hh
outputter / ResFileOutputter.hhpack / task / TaskFactory.fwd.hh
moves / ResId.cctypes.hh
moves / ResId.hhtypes.hh
scoring / methods / ResidualDipolarCouplingEnergyRigidSegments.ccscoring / EnergyMap.hh
scoring / methods / ResidualDipolarCouplingEnergyRigidSegments.ccscoring / ScoreType.hh
scoring / methods / ResidualDipolarCouplingEnergyRigidSegments.hhid / AtomID_Map.hh
scoring / methods / ResidualDipolarCouplingEnergyRigidSegments.hhpose / Pose.fwd.hh
scoring / methods / ResidualDipolarCouplingEnergyRigidSegments.hhscoring / ScoreFunction.fwd.hh
scoring / methods / ResidualDipolarCouplingEnergyRigidSegments.hhscoring / ScoreType.hh
scoring / methods / ResidualDipolarCouplingEnergyRigidSegments.hhscoring / methods / WholeStructureEnergy.hh
scoring / methods / ResidualDipolarCouplingEnergyRigidSegmentsCreator.hhscoring / methods / EnergyMethodCreator.hh
scoring / ResidualDipolarCouplingRigidSegments.ccpose / datacache / CacheableDataType.hh
scoring / ResidualDipolarCouplingRigidSegments.ccpose / Pose.hh
scoring / ResidualDipolarCouplingRigidSegments.hhpose / Pose.fwd.hh
scoring / ResidualDipolarCouplingRigidSegments.hhscoring / ResidualDipolarCoupling.hh
scoring / ResidualDipolarCouplingRigidSegments.hhtypes.hh
features / ResidueBurialFeatures.ccid / AtomID_Map.hh
features / ResidueBurialFeatures.ccscoring / Energies.hh
features / ResidueBurialFeatures.ccscoring / EnergyMap.hh
features / ResidueBurialFeatures.ccscoring / methods / EnergyMethodOptions.fwd.hh
features / ResidueBurialFeatures.ccscoring / nv / NVscore.hh
features / ResidueBurialFeatures.ccpose / Pose.hh
features / ResidueBurialFeatures.ccscoring / sasa.hh
features / ResidueBurialFeatures.ccscoring / ScoreType.hh
features / ResidueBurialFeatures.ccscoring / TenANeighborGraph.hh
features / ResidueBurialFeatures.ccscoring / TwelveANeighborGraph.hh
features / ResidueBurialFeatures.cctypes.hh
features / ResidueBurialFeatures.hhscoring / nv / NVscore.fwd.hh
features / ResidueBurialFeatures.hhtypes.hh
features / ResidueBurialFeaturesCreator.hhtypes.hh
simple_filters / ResidueBurialFilter.ccconformation / Conformation.hh
simple_filters / ResidueBurialFilter.ccpose / Pose.hh
simple_filters / ResidueBurialFilter.ccconformation / Residue.hh
simple_filters / ResidueBurialFilter.ccpose / selection.hh
simple_filters / ResidueBurialFilter.ccpack / task / TaskFactory.hh
simple_filters / ResidueBurialFilter.cctypes.hh
simple_filters / ResidueBurialFilter.hhpack / task / TaskFactory.fwd.hh
simple_filters / ResidueBurialFilter.hhtypes.hh
features / ResidueConformationFeatures.ccchemical / AA.hh
features / ResidueConformationFeatures.ccid / AtomID.hh
features / ResidueConformationFeatures.ccpose / Pose.hh
features / ResidueConformationFeatures.ccconformation / Residue.hh
features / ResidueConformationFeatures.cctypes.hh
features / ResidueConformationFeatures.ccpose / util.hh
features / ResidueConformationFeatures.ccconformation / util.hh
features / ResidueConformationFeatures.hhtypes.hh
features / ResidueConformationFeaturesCreator.hhtypes.hh
simple_filters / ResidueCountFilter.ccpose / Pose.hh
simple_filters / ResidueCountFilter.ccconformation / Residue.hh
simple_filters / ResidueCountFilter.ccchemical / ResidueTypeSet.hh
simple_filters / ResidueCountFilter.hhpose / Pose.fwd.hh
simple_filters / ResidueCountFilter.hhchemical / ResidueTypeSet.fwd.hh
simple_filters / ResidueCountFilter.hhscoring / ScoreFunction.hh
simple_filters / ResidueCountFilter.hhtypes.hh
toolbox / pose_metric_calculators / ResidueDecompositionByChainCalculator.ccconformation / Conformation.hh
toolbox / pose_metric_calculators / ResidueDecompositionByChainCalculator.ccpose / PDBInfo.hh
toolbox / pose_metric_calculators / ResidueDecompositionByChainCalculator.ccpose / Pose.hh
toolbox / pose_metric_calculators / ResidueDecompositionByChainCalculator.hhpose / Pose.fwd.hh
toolbox / pose_metric_calculators / ResidueDecompositionByChainCalculator.hhtypes.hh
toolbox / pose_metric_calculators / ResidueDecompositionCalculator.ccpose / Pose.hh
toolbox / pose_metric_calculators / ResidueDecompositionCalculator.hhpose / Pose.fwd.hh
toolbox / pose_metric_calculators / ResidueDecompositionCalculator.hhpose / metrics / PoseMetricCalculatorBase.hh
toolbox / pose_metric_calculators / ResidueDecompositionCalculator.hhtypes.hh
simple_filters / ResidueDistanceFilter.ccconformation / Conformation.hh
simple_filters / ResidueDistanceFilter.ccpose / Pose.hh
simple_filters / ResidueDistanceFilter.ccconformation / Residue.hh
simple_filters / ResidueDistanceFilter.ccpose / selection.hh
simple_filters / ResidueDistanceFilter.hhpose / Pose.fwd.hh
simple_filters / ResidueDistanceFilter.hhtypes.hh
comparative_modeling / features / ResidueFeature.ccid / SequenceMapping.hh
comparative_modeling / features / ResidueFeature.hhpose / Pose.fwd.hh
comparative_modeling / features / ResidueFeature.hhid / SequenceMapping.fwd.hh
comparative_modeling / features / ResidueFeature.hhtypes.hh
features / ResidueFeatures.ccpose / Pose.hh
features / ResidueFeatures.ccconformation / Residue.hh
features / ResidueFeatures.cctypes.hh
features / ResidueFeatures.hhtypes.hh
features / ResidueFeaturesCreator.hhtypes.hh
features / ResidueGridScoresFeatures.ccpose / util.hh
features / ResidueGridScoresFeatures.hhpose / Pose.fwd.hh
simple_filters / ResidueIEFilter.ccconformation / Conformation.hh
simple_filters / ResidueIEFilter.ccscoring / Energies.hh
simple_filters / ResidueIEFilter.ccscoring / EnergyGraph.hh
simple_filters / ResidueIEFilter.ccpose / Pose.hh
simple_filters / ResidueIEFilter.ccpose / selection.hh
simple_filters / ResidueIEFilter.hhpose / Pose.fwd.hh
simple_filters / ResidueIEFilter.hhscoring / ScoreFunction.hh
simple_filters / ResidueIEFilter.hhscoring / ScoreType.hh
jumping / ResiduePairJump.ccchemical / AtomICoor.hh
jumping / ResiduePairJump.ccid / AtomID.hh
jumping / ResiduePairJump.ccfragment / FragData.hh
jumping / ResiduePairJump.ccfragment / Frame.hh
jumping / ResiduePairJump.ccgraph / Graph.hh
jumping / ResiduePairJump.ccfragment / JumpingFrame.hh
jumping / ResiduePairJump.ccfragment / JumpSRFD.hh
jumping / ResiduePairJump.ccid / NamedAtomID.hh
jumping / ResiduePairJump.ccpack / packer_neighbors.hh
jumping / ResiduePairJump.ccpack / task / PackerTask.hh
jumping / ResiduePairJump.ccpose / Pose.hh
jumping / ResiduePairJump.ccconformation / Residue.hh
jumping / ResiduePairJump.ccconformation / ResidueFactory.hh
jumping / ResiduePairJump.ccchemical / ResidueType.hh
jumping / ResiduePairJump.ccpack / rotamer_set / RotamerSet.hh
jumping / ResiduePairJump.ccpack / rotamer_set / RotamerSetFactory.hh
jumping / ResiduePairJump.ccscoring / ScoreFunction.hh
jumping / ResiduePairJump.ccscoring / ScoreFunctionFactory.hh
jumping / ResiduePairJump.ccpack / task / TaskFactory.hh
jumping / ResiduePairJump.hhfragment / Frame.fwd.hh
jumping / ResiduePairJump.hhkinematics / Jump.hh
jumping / ResiduePairJump.hhpose / Pose.fwd.hh
jumping / ResiduePairJump.hhchemical / ResidueType.fwd.hh
jumping / ResiduePairJump.hhpack / rotamer_set / RotamerSet.fwd.hh
jumping / ResiduePairJump.hhtypes.hh
jumping / ResiduePairJumpSetup.ccchemical / ChemicalManager.hh
jumping / ResiduePairJumpSetup.ccfragment / Frame.hh
jumping / ResiduePairJumpSetup.ccfragment / FrameList.hh
jumping / ResiduePairJumpSetup.cckinematics / MoveMap.hh
jumping / ResiduePairJumpSetup.ccfragment / OrderedFragSet.hh
jumping / ResiduePairJumpSetup.ccchemical / ResidueType.hh
jumping / ResiduePairJumpSetup.ccchemical / ResidueTypeSet.hh
jumping / ResiduePairJumpSetup.ccid / SequenceMapping.hh
features / ResidueScoresFeatures.ccscoring / methods / ContextDependentLRTwoBodyEnergy.hh
features / ResidueScoresFeatures.ccscoring / methods / ContextIndependentLRTwoBodyEnergy.hh
features / ResidueScoresFeatures.ccscoring / Energies.hh
features / ResidueScoresFeatures.ccscoring / EnergyGraph.hh
features / ResidueScoresFeatures.ccscoring / LREnergyContainer.hh
features / ResidueScoresFeatures.ccpose / Pose.hh
features / ResidueScoresFeatures.ccconformation / Residue.hh
features / ResidueScoresFeatures.ccscoring / ScoreFunction.hh
features / ResidueScoresFeatures.ccscoring / ScoreFunctionFactory.hh
features / ResidueScoresFeatures.ccscoring / ScoreType.hh
features / ResidueScoresFeatures.ccscoring / ScoreTypeManager.hh
features / ResidueScoresFeatures.cctypes.hh
features / ResidueScoresFeatures.hhpose / Pose.fwd.hh
features / ResidueScoresFeatures.hhscoring / ScoreFunction.fwd.hh
features / ResidueScoresFeatures.hhtypes.hh
features / ResidueScoresFeaturesCreator.hhtypes.hh
features / ResidueSecondaryStructureFeatures.ccscoring / dssp / Dssp.hh
features / ResidueSecondaryStructureFeatures.ccpose / Pose.hh
features / ResidueSecondaryStructureFeatures.ccconformation / Residue.hh
features / ResidueSecondaryStructureFeatures.cctypes.hh
features / ResidueSecondaryStructureFeatures.hhpose / Pose.fwd.hh
features / ResidueSecondaryStructureFeatures.hhtypes.hh
features / ResidueSecondaryStructureFeaturesCreator.hhtypes.hh
simple_filters / ResidueSetChainEnergyFilter.ccchemical / AtomType.hh
simple_filters / ResidueSetChainEnergyFilter.ccchemical / ChemicalManager.fwd.hh
simple_filters / ResidueSetChainEnergyFilter.ccconformation / Conformation.hh
simple_filters / ResidueSetChainEnergyFilter.ccscoring / Energies.hh
simple_filters / ResidueSetChainEnergyFilter.ccscoring / EnergyGraph.hh
simple_filters / ResidueSetChainEnergyFilter.ccpose / Pose.hh
simple_filters / ResidueSetChainEnergyFilter.ccscoring / ScoreFunction.hh
simple_filters / ResidueSetChainEnergyFilter.ccscoring / ScoreFunctionFactory.hh
simple_filters / ResidueSetChainEnergyFilter.ccscoring / ScoreType.hh
simple_filters / ResidueSetChainEnergyFilter.ccscoring / ScoreTypeManager.hh
simple_filters / ResidueSetChainEnergyFilter.ccpose / selection.hh
simple_filters / ResidueSetChainEnergyFilter.ccutil / SwitchResidueTypeSet.hh
simple_filters / ResidueSetChainEnergyFilter.hhpose / Pose.fwd.hh
simple_filters / ResidueSetChainEnergyFilter.hhscoring / ScoreFunction.hh
simple_filters / ResidueSetChainEnergyFilter.hhscoring / ScoreType.hh
simple_filters / ResidueSetChainEnergyFilter.hhtypes.hh
simple_filters / ResiduesInInterfaceFilter.ccchemical / AtomType.hh
simple_filters / ResiduesInInterfaceFilter.ccchemical / ChemicalManager.fwd.hh
simple_filters / ResiduesInInterfaceFilter.ccconformation / Conformation.hh
simple_filters / ResiduesInInterfaceFilter.ccscoring / Energies.hh
simple_filters / ResiduesInInterfaceFilter.cckinematics / FoldTree.hh
simple_filters / ResiduesInInterfaceFilter.ccpack / pack_rotamers.hh
simple_filters / ResiduesInInterfaceFilter.ccpack / task / PackerTask.hh
simple_filters / ResiduesInInterfaceFilter.ccpose / PDBInfo.hh
simple_filters / ResiduesInInterfaceFilter.ccpose / Pose.hh
simple_filters / ResiduesInInterfaceFilter.ccscoring / ScoreFunction.hh
simple_filters / ResiduesInInterfaceFilter.ccscoring / ScoreFunctionFactory.hh
simple_filters / ResiduesInInterfaceFilter.ccscoring / ScoreType.hh
simple_filters / ResiduesInInterfaceFilter.ccscoring / ScoreTypeManager.hh
simple_filters / ResiduesInInterfaceFilter.ccutil / SwitchResidueTypeSet.hh
simple_filters / ResiduesInInterfaceFilter.ccconformation / symmetry / SymmetricConformation.hh
simple_filters / ResiduesInInterfaceFilter.ccscoring / symmetry / SymmetricScoreFunction.hh
simple_filters / ResiduesInInterfaceFilter.ccconformation / symmetry / SymmetryInfo.hh
simple_filters / ResiduesInInterfaceFilter.ccpack / task / TaskFactory.hh
simple_filters / ResiduesInInterfaceFilter.cctypes.hh
simple_filters / ResiduesInInterfaceFilter.ccpose / symmetry / util.hh
simple_filters / ResiduesInInterfaceFilter.hhpose / Pose.fwd.hh
simple_filters / ResiduesInInterfaceFilter.hhscoring / ScoreFunction.hh
simple_filters / ResiduesInInterfaceFilter.hhtypes.hh
ligand_docking / ResidueTorsionRestraints.ccid / AtomID.hh
ligand_docking / ResidueTorsionRestraints.ccchemical / AtomType.hh
ligand_docking / ResidueTorsionRestraints.ccscoring / constraints / CircularHarmonicFunc.hh
ligand_docking / ResidueTorsionRestraints.ccscoring / constraints / ConstraintSet.hh
ligand_docking / ResidueTorsionRestraints.ccscoring / constraints / DihedralConstraint.hh
ligand_docking / ResidueTorsionRestraints.ccscoring / constraints / Func.hh
ligand_docking / ResidueTorsionRestraints.ccpose / Pose.hh
ligand_docking / ResidueTorsionRestraints.ccconformation / Residue.hh
ligand_docking / ResidueTorsionRestraints.hhscoring / constraints / Constraint.hh
ligand_docking / ResidueTorsionRestraints.hhscoring / constraints / ConstraintSet.fwd.hh
ligand_docking / ResidueTorsionRestraints.hhpose / Pose.fwd.hh
ligand_docking / ResidueTorsionRestraints.hhtypes.hh
features / ResidueTotalScoresFeatures.ccscoring / Energies.hh
features / ResidueTotalScoresFeatures.ccscoring / methods / EnergyMethodOptions.hh
features / ResidueTotalScoresFeatures.ccscoring / hbonds / HBondOptions.hh
features / ResidueTotalScoresFeatures.ccpose / Pose.hh
features / ResidueTotalScoresFeatures.ccconformation / Residue.hh
features / ResidueTotalScoresFeatures.ccscoring / ScoreFunction.hh
features / ResidueTotalScoresFeatures.ccscoring / ScoreFunctionFactory.hh
features / ResidueTotalScoresFeatures.ccscoring / ScoreTypeManager.hh
features / ResidueTotalScoresFeatures.cctypes.hh
features / ResidueTotalScoresFeatures.hhpose / Pose.fwd.hh
features / ResidueTotalScoresFeatures.hhscoring / ScoreFunction.fwd.hh
features / ResidueTotalScoresFeatures.hhtypes.hh
features / ResidueTotalScoresFeaturesCreator.hhtypes.hh
features / ResidueTypesFeatures.ccchemical / AtomType.hh
features / ResidueTypesFeatures.ccpose / Pose.hh
features / ResidueTypesFeatures.ccchemical / ResidueDatabaseIO.hh
features / ResidueTypesFeatures.ccchemical / ResidueType.hh
features / ResidueTypesFeatures.ccchemical / ResidueTypeSet.hh
features / ResidueTypesFeatures.cctypes.hh
features / ResidueTypesFeatures.hhchemical / ResidueDatabaseIO.hh
features / ResidueTypesFeatures.hhchemical / ResidueType.fwd.hh
features / ResidueTypesFeatures.hhtypes.hh
features / ResidueTypesFeaturesCreator.hhtypes.hh
forge / remodel / ResidueVicinityRCG.ccscoring / constraints / AmbiguousConstraint.hh
forge / remodel / ResidueVicinityRCG.ccscoring / constraints / AngleConstraint.hh
forge / remodel / ResidueVicinityRCG.ccid / AtomID.hh
forge / remodel / ResidueVicinityRCG.ccscoring / constraints / AtomPairConstraint.hh
forge / remodel / ResidueVicinityRCG.ccscoring / constraints / DihedralConstraint.hh
forge / remodel / ResidueVicinityRCG.ccpose / Pose.hh
forge / remodel / ResidueVicinityRCG.ccid / SequenceMapping.hh
forge / remodel / ResidueVicinityRCG.hhscoring / constraints / Constraint.fwd.hh
forge / remodel / ResidueVicinityRCG.hhscoring / constraints / Func.fwd.hh
forge / remodel / ResidueVicinityRCG.hhpose / Pose.fwd.hh
forge / remodel / ResidueVicinityRCG.hhtypes.hh
abinitio / ResolutionSwitcher.ccoptimization / AtomTreeMinimizer.hh
abinitio / ResolutionSwitcher.ccchemical / ChemicalManager.fwd.hh
abinitio / ResolutionSwitcher.ccconformation / Conformation.hh
abinitio / ResolutionSwitcher.ccscoring / constraints / ConstraintSet.hh
abinitio / ResolutionSwitcher.ccoptimization / MinimizerOptions.hh
abinitio / ResolutionSwitcher.cckinematics / MoveMap.hh
abinitio / ResolutionSwitcher.ccpack / task / PackerTask.hh
abinitio / ResolutionSwitcher.ccpose / Pose.hh
abinitio / ResolutionSwitcher.ccscoring / ScoreFunction.hh
abinitio / ResolutionSwitcher.ccscoring / ScoreFunctionFactory.hh
abinitio / ResolutionSwitcher.ccid / SequenceMapping.hh
abinitio / ResolutionSwitcher.ccutil / SwitchResidueTypeSet.hh
abinitio / ResolutionSwitcher.ccpack / task / TaskFactory.hh
abinitio / ResolutionSwitcher.ccpose / util.hh
abinitio / ResolutionSwitcher.ccchemical / VariantType.hh
abinitio / ResolutionSwitcher.hhpose / Pose.hh
abinitio / ResolutionSwitcher.hhscoring / ScoreFunction.hh
noesy_assign / Resonance.ccchemical / AA.hh
noesy_assign / Resonance.ccid / NamedAtomID.hh
noesy_assign / Resonance.hhchemical / AA.hh
noesy_assign / Resonance.hhid / NamedAtomID.hh
noesy_assign / Resonance.hhtypes.hh
noesy_assign / ResonanceList.ccchemical / AA.hh
noesy_assign / ResonanceList.ccscoring / constraints / AmbiguousNMRDistanceConstraint.hh
noesy_assign / ResonanceList.ccid / NamedAtomID.hh
noesy_assign / ResonanceList.hhchemical / AA.hh
noesy_assign / ResonanceList.hhid / NamedAtomID.hh
noesy_assign / ResonanceList.hhtypes.hh
toolbox / task_operations / RestrictByCalculatorsOperation.ccpack / task / PackerTask.hh
toolbox / task_operations / RestrictByCalculatorsOperation.ccpose / Pose.hh
toolbox / task_operations / RestrictByCalculatorsOperation.cctypes.hh
toolbox / task_operations / RestrictByCalculatorsOperation.hhpack / task / PackerTask.fwd.hh
toolbox / task_operations / RestrictByCalculatorsOperation.hhpose / Pose.fwd.hh
toolbox / task_operations / RestrictByCalculatorsOperationCreator.hhpack / task / operation / TaskOperationCreator.hh
toolbox / task_operations / RestrictChainToRepackingOperation.ccconformation / Conformation.hh
toolbox / task_operations / RestrictChainToRepackingOperation.ccpose / Pose.hh
toolbox / task_operations / RestrictChainToRepackingOperation.ccpack / task / operation / TaskOperations.hh
toolbox / task_operations / RestrictChainToRepackingOperation.cctypes.hh
toolbox / task_operations / RestrictChainToRepackingOperation.hhpack / task / PackerTask.fwd.hh
toolbox / task_operations / RestrictChainToRepackingOperation.hhpose / Pose.fwd.hh
toolbox / task_operations / RestrictChainToRepackingOperation.hhtypes.hh
toolbox / task_operations / RestrictChainToRepackingOperationCreator.hhpack / task / operation / TaskOperationCreator.hh
dna / RestrictDesignToProteinDNAInterface.ccchemical / AA.hh
dna / RestrictDesignToProteinDNAInterface.ccscoring / constraints / ConstraintSet.hh
dna / RestrictDesignToProteinDNAInterface.ccpack / task / PackerTask.hh
dna / RestrictDesignToProteinDNAInterface.ccpose / PDBInfo.hh
dna / RestrictDesignToProteinDNAInterface.ccpose / PDBPoseMap.hh
dna / RestrictDesignToProteinDNAInterface.ccpose / Pose.hh
dna / RestrictDesignToProteinDNAInterface.ccconformation / Residue.hh
dna / RestrictDesignToProteinDNAInterface.ccchemical / ResidueType.hh
dna / RestrictDesignToProteinDNAInterface.ccchemical / ResidueTypeSet.hh
dna / RestrictDesignToProteinDNAInterface.hhpack / task / PackerTask.fwd.hh
dna / RestrictDesignToProteinDNAInterface.hhpose / Pose.fwd.hh
dna / RestrictDesignToProteinDNAInterface.hhpack / task / operation / TaskOperation.hh
dna / RestrictDesignToProteinDNAInterface.hhtypes.hh
dna / RestrictDesignToProteinDNAInterfaceCreator.hhpack / task / operation / TaskOperationCreator.hh
toolbox / task_operations / RestrictIdentitiesAtAlignedPositions.ccconformation / Conformation.hh
toolbox / task_operations / RestrictIdentitiesAtAlignedPositions.ccimport_pose / import_pose.hh
toolbox / task_operations / RestrictIdentitiesAtAlignedPositions.ccpack / task / operation / OperateOnCertainResidues.hh
toolbox / task_operations / RestrictIdentitiesAtAlignedPositions.ccpose / Pose.hh
toolbox / task_operations / RestrictIdentitiesAtAlignedPositions.ccpack / task / operation / ResLvlTaskOperations.hh
toolbox / task_operations / RestrictIdentitiesAtAlignedPositions.ccpose / selection.hh
toolbox / task_operations / RestrictIdentitiesAtAlignedPositions.ccpack / task / TaskFactory.hh
toolbox / task_operations / RestrictIdentitiesAtAlignedPositions.cctypes.hh
toolbox / task_operations / RestrictIdentitiesAtAlignedPositions.hhpack / task / PackerTask.fwd.hh
toolbox / task_operations / RestrictIdentitiesAtAlignedPositions.hhpose / Pose.fwd.hh
toolbox / task_operations / RestrictIdentitiesAtAlignedPositions.hhtypes.hh
toolbox / task_operations / RestrictIdentitiesAtAlignedPositionsCreator.hhpack / task / operation / TaskOperationCreator.hh
toolbox / task_operations / RestrictInterGroupVectorOperation.ccpack / task / operation / util / interface_vector_calculate.hh
toolbox / task_operations / RestrictInterGroupVectorOperation.ccpack / task / PackerTask.hh
toolbox / task_operations / RestrictInterGroupVectorOperation.ccpose / Pose.hh
toolbox / task_operations / RestrictInterGroupVectorOperation.ccpose / selection.hh
toolbox / task_operations / RestrictInterGroupVectorOperation.cctypes.hh
toolbox / task_operations / RestrictInterGroupVectorOperation.hhpack / task / PackerTask.fwd.hh
toolbox / task_operations / RestrictInterGroupVectorOperation.hhpack / task / operation / TaskOperation.hh
toolbox / task_operations / RestrictInterGroupVectorOperation.hhtypes.hh
toolbox / task_operations / RestrictInterGroupVectorOperationCreator.hhpack / task / operation / TaskOperationCreator.hh
toolbox / task_operations / RestrictNativeResiduesOperation.ccconformation / Conformation.hh
toolbox / task_operations / RestrictNativeResiduesOperation.ccimport_pose / import_pose.hh
toolbox / task_operations / RestrictNativeResiduesOperation.ccpack / task / PackerTask.hh
toolbox / task_operations / RestrictNativeResiduesOperation.ccpose / PDBInfo.hh
toolbox / task_operations / RestrictNativeResiduesOperation.ccpose / Pose.hh
toolbox / task_operations / RestrictNativeResiduesOperation.ccconformation / symmetry / SymmetryInfo.hh
toolbox / task_operations / RestrictNativeResiduesOperation.ccpose / symmetry / util.hh
toolbox / task_operations / RestrictNativeResiduesOperation.hhpack / task / PackerTask.fwd.hh
toolbox / task_operations / RestrictNativeResiduesOperation.hhpack / task / operation / TaskOperation.hh
toolbox / task_operations / RestrictNativeResiduesOperation.hhtypes.hh
toolbox / task_operations / RestrictNativeResiduesOperationCreator.hhpack / task / operation / TaskOperationCreator.hh
toolbox / task_operations / RestrictNonSurfaceToRepackingOperation.ccconformation / find_neighbors.hh
toolbox / task_operations / RestrictNonSurfaceToRepackingOperation.ccpack / task / PackerTask.hh
toolbox / task_operations / RestrictNonSurfaceToRepackingOperation.ccconformation / PointGraph.hh
toolbox / task_operations / RestrictNonSurfaceToRepackingOperation.ccconformation / PointGraphData.hh
toolbox / task_operations / RestrictNonSurfaceToRepackingOperation.ccpose / Pose.hh
toolbox / task_operations / RestrictNonSurfaceToRepackingOperation.cctypes.hh
toolbox / task_operations / RestrictNonSurfaceToRepackingOperation.ccgraph / UpperEdgeGraph.hh
toolbox / task_operations / RestrictNonSurfaceToRepackingOperation.hhpack / task / PackerTask.fwd.hh
toolbox / task_operations / RestrictNonSurfaceToRepackingOperation.hhpose / Pose.fwd.hh
toolbox / task_operations / RestrictNonSurfaceToRepackingOperation.hhpack / task / operation / TaskOperation.hh
toolbox / task_operations / RestrictNonSurfaceToRepackingOperation.hhtypes.hh
toolbox / task_operations / RestrictNonSurfaceToRepackingOperationCreator.hhpack / task / operation / TaskOperationCreator.hh
toolbox / task_operations / RestrictOperationsBase.ccpose / Pose.hh
toolbox / task_operations / RestrictOperationsBase.hhpack / task / PackerTask.fwd.hh
toolbox / task_operations / RestrictOperationsBase.hhpose / Pose.fwd.hh
toolbox / task_operations / RestrictOperationsBase.hhpack / task / operation / TaskOperation.hh
toolbox / task_operations / RestrictResiduesToRepackingOperation.cckinematics / Jump.hh
toolbox / task_operations / RestrictResiduesToRepackingOperation.ccconformation / Residue.hh
toolbox / task_operations / RestrictResiduesToRepackingOperation.ccpack / task / operation / TaskOperations.hh
toolbox / task_operations / RestrictResiduesToRepackingOperation.ccid / types.hh
toolbox / task_operations / RestrictResiduesToRepackingOperation.cctypes.hh
toolbox / task_operations / RestrictResiduesToRepackingOperation.hhpack / task / PackerTask.fwd.hh
toolbox / task_operations / RestrictResiduesToRepackingOperation.hhpose / Pose.fwd.hh
toolbox / task_operations / RestrictResiduesToRepackingOperation.hhtypes.hh
toolbox / task_operations / RestrictResiduesToRepackingOperationCreator.hhpack / task / operation / TaskOperationCreator.hh
toolbox / task_operations / RestrictToAlignedSegments.ccconformation / Conformation.hh
toolbox / task_operations / RestrictToAlignedSegments.ccimport_pose / import_pose.hh
toolbox / task_operations / RestrictToAlignedSegments.ccpack / task / operation / OperateOnCertainResidues.hh
toolbox / task_operations / RestrictToAlignedSegments.ccpose / Pose.hh
toolbox / task_operations / RestrictToAlignedSegments.ccpack / task / operation / ResLvlTaskOperations.hh
toolbox / task_operations / RestrictToAlignedSegments.ccpose / selection.hh
toolbox / task_operations / RestrictToAlignedSegments.ccpack / task / TaskFactory.hh
toolbox / task_operations / RestrictToAlignedSegments.cctypes.hh
toolbox / task_operations / RestrictToAlignedSegments.hhpack / task / PackerTask.fwd.hh
toolbox / task_operations / RestrictToAlignedSegments.hhpose / Pose.fwd.hh
toolbox / task_operations / RestrictToAlignedSegments.hhtypes.hh
toolbox / task_operations / RestrictToAlignedSegmentsCreator.hhpack / task / operation / TaskOperationCreator.hh
toolbox / task_operations / RestrictToCDRH3Loop.ccpose / PDBInfo.hh
toolbox / task_operations / RestrictToCDRH3Loop.ccpose / Pose.hh
toolbox / task_operations / RestrictToCDRH3Loop.ccpack / task / operation / TaskOperation.hh
toolbox / task_operations / RestrictToCDRH3Loop.ccpack / task / operation / TaskOperations.hh
toolbox / task_operations / RestrictToCDRH3Loop.hhpack / task / PackerTask.fwd.hh
toolbox / task_operations / RestrictToCDRH3Loop.hhpose / Pose.fwd.hh
toolbox / task_operations / RestrictToCDRH3Loop.hhpack / task / operation / TaskOperation.hh
toolbox / task_operations / RestrictToCDRH3LoopCreator.hhpack / task / operation / TaskOperationCreator.hh
toolbox / task_operations / RestrictToInterface.ccconformation / Conformation.hh
toolbox / task_operations / RestrictToInterface.cckinematics / FoldTree.hh
toolbox / task_operations / RestrictToInterface.ccpack / task / PackerTask.hh
toolbox / task_operations / RestrictToInterface.ccpose / Pose.hh
toolbox / task_operations / RestrictToInterface.ccconformation / Residue.hh
toolbox / task_operations / RestrictToInterface.ccconformation / symmetry / SymmetricConformation.hh
toolbox / task_operations / RestrictToInterface.ccconformation / symmetry / SymmetryInfo.hh
toolbox / task_operations / RestrictToInterface.ccpose / symmetry / util.hh
toolbox / task_operations / RestrictToInterface.hhpack / task / PackerTask.fwd.hh
toolbox / task_operations / RestrictToInterface.hhpose / Pose.fwd.hh
toolbox / task_operations / RestrictToInterface.hhpack / task / operation / TaskOperation.hh
toolbox / task_operations / RestrictToInterface.hhtypes.hh
toolbox / task_operations / RestrictToInterfaceCreator.hhpack / task / operation / TaskOperationCreator.hh
toolbox / task_operations / RestrictToInterfaceOperation.ccpose / metrics / CalculatorFactory.hh
toolbox / task_operations / RestrictToInterfaceOperation.ccpose / metrics / simple_calculators / InterfaceNeighborDefinitionCalculator.hh
toolbox / task_operations / RestrictToInterfaceOperation.ccpack / task / PackerTask.hh
toolbox / task_operations / RestrictToInterfaceOperation.ccpose / Pose.hh
toolbox / task_operations / RestrictToInterfaceOperation.cctypes.hh
toolbox / task_operations / RestrictToInterfaceOperation.hhpack / task / PackerTask.fwd.hh
toolbox / task_operations / RestrictToInterfaceOperation.hhpose / Pose.fwd.hh
toolbox / task_operations / RestrictToInterfaceOperation.hhtypes.hh
toolbox / task_operations / RestrictToInterfaceOperationCreator.hhpack / task / operation / TaskOperationCreator.hh
toolbox / task_operations / RestrictToInterfaceVectorOperation.ccpack / task / operation / util / interface_vector_calculate.hh
toolbox / task_operations / RestrictToInterfaceVectorOperation.ccpack / task / PackerTask.hh
toolbox / task_operations / RestrictToInterfaceVectorOperation.ccpose / Pose.hh
toolbox / task_operations / RestrictToInterfaceVectorOperation.cctypes.hh
toolbox / task_operations / RestrictToInterfaceVectorOperation.hhpose / Pose.fwd.hh
toolbox / task_operations / RestrictToInterfaceVectorOperationCreator.hhpack / task / operation / TaskOperationCreator.hh
toolbox / task_operations / RestrictToLoopsAndNeighbors.ccpose / PDBInfo.hh
toolbox / task_operations / RestrictToLoopsAndNeighbors.ccpose / Pose.hh
toolbox / task_operations / RestrictToLoopsAndNeighbors.ccpack / task / operation / TaskOperations.hh
toolbox / task_operations / RestrictToLoopsAndNeighbors.ccpose / symmetry / util.hh
toolbox / task_operations / RestrictToLoopsAndNeighbors.hhpack / task / PackerTask.fwd.hh
toolbox / task_operations / RestrictToLoopsAndNeighbors.hhpose / Pose.fwd.hh
toolbox / task_operations / RestrictToLoopsAndNeighbors.hhpack / task / operation / TaskOperation.hh
toolbox / task_operations / RestrictToLoopsAndNeighbors.hhtypes.hh
toolbox / task_operations / RestrictToLoopsAndNeighborsCreator.hhpack / task / operation / TaskOperationCreator.hh
toolbox / task_operations / RestrictToNeighborhoodOperation.ccpose / metrics / CalculatorFactory.hh
toolbox / task_operations / RestrictToNeighborhoodOperation.ccpack / task / PackerTask.hh
toolbox / task_operations / RestrictToNeighborhoodOperation.ccpose / Pose.hh
toolbox / task_operations / RestrictToNeighborhoodOperation.cctypes.hh
toolbox / task_operations / RestrictToNeighborhoodOperation.hhpack / task / PackerTask.fwd.hh
toolbox / task_operations / RestrictToNeighborhoodOperation.hhpose / Pose.fwd.hh
toolbox / task_operations / RestrictToNeighborhoodOperation.hhtypes.hh
toolbox / task_operations / RestrictToNeighborhoodOperationCreator.hhpack / task / operation / TaskOperationCreator.hh
toolbox / task_operations / RestrictToTerminiOperation.ccconformation / Conformation.hh
toolbox / task_operations / RestrictToTerminiOperation.ccpack / task / operation / OperateOnCertainResidues.hh
toolbox / task_operations / RestrictToTerminiOperation.ccpack / task / PackerTask.hh
toolbox / task_operations / RestrictToTerminiOperation.ccpose / Pose.hh
toolbox / task_operations / RestrictToTerminiOperation.ccpack / task / operation / ResLvlTaskOperations.hh
toolbox / task_operations / RestrictToTerminiOperation.cctypes.hh
toolbox / task_operations / RestrictToTerminiOperation.hhpack / task / PackerTask.fwd.hh
toolbox / task_operations / RestrictToTerminiOperation.hhpose / Pose.fwd.hh
toolbox / task_operations / RestrictToTerminiOperation.hhpack / task / operation / TaskOperation.hh
toolbox / task_operations / RestrictToTerminiOperation.hhtypes.hh
toolbox / task_operations / RestrictToTerminiOperationCreator.hhpack / task / operation / TaskOperationCreator.hh
simple_moves / ReturnSidechainMover.ccchemical / AtomType.hh
simple_moves / ReturnSidechainMover.ccscoring / Energies.hh
simple_moves / ReturnSidechainMover.ccpose / Pose.hh
simple_moves / ReturnSidechainMover.ccchemical / ResidueType.hh
simple_moves / ReturnSidechainMover.ccconformation / symmetry / SymmetricConformation.hh
simple_moves / ReturnSidechainMover.ccconformation / symmetry / SymmetryInfo.hh
simple_moves / ReturnSidechainMover.cctypes.hh
simple_moves / ReturnSidechainMover.ccpose / symmetry / util.hh
simple_moves / ReturnSidechainMover.ccpose / util.hh
simple_moves / ReturnSidechainMover.hhpose / Pose.hh
simple_moves / ReturnSidechainMover.hhtypes.hh
simple_filters / RGFilter.ccpose / Pose.hh
simple_filters / RGFilter.ccscoring / methods / RG_Energy_Fast.hh
simple_filters / RGFilter.ccscoring / ScoreFunction.fwd.hh
simple_filters / RGFilter.cctypes.hh
simple_filters / RGFilter.hhpose / Pose.fwd.hh
rigid / rigid_body_moves.cckinematics / Jump.hh
rigid / rigid_body_moves.cckinematics / MoveMap.hh
rigid / rigid_body_moves.ccpose / Pose.hh
rigid / rigid_body_moves.hhkinematics / MoveMap.fwd.hh
rigid / rigid_body_moves.hhpose / Pose.fwd.hh
rigid / rigid_body_moves.hhtypes.hh
docking / RigidBodyInfo.hhtypes.hh
rigid / RigidBodyMotionMover.cckinematics / FoldTree.hh
rigid / RigidBodyMotionMover.cckinematics / Jump.hh
rigid / RigidBodyMotionMover.ccid / NamedAtomID.hh
rigid / RigidBodyMotionMover.ccpose / Pose.hh
rigid / RigidBodyMotionMover.hhkinematics / FoldTree.hh
rigid / RigidBodyMotionMover.hhpose / Pose.fwd.hh
rigid / RigidBodyMover.ccconformation / Conformation.hh
rigid / RigidBodyMover.cckinematics / MoveMap.hh
rigid / RigidBodyMover.ccpose / PDBInfo.hh
rigid / RigidBodyMover.ccpose / Pose.hh
rigid / RigidBodyMover.ccconformation / Residue.hh
rigid / RigidBodyMover.ccid / TorsionID_Range.hh
rigid / RigidBodyMover.hhkinematics / MoveMap.fwd.hh
rigid / RigidBodyMover.hhpose / Pose.fwd.hh
rigid / RigidBodyMover.hhconformation / symmetry / SymDof.hh
rigid / RigidBodyMover.hhtypes.hh
toolbox / rotamer_set_operations / RigidBodyMoveRotSetOps.ccscoring / Energies.hh
toolbox / rotamer_set_operations / RigidBodyMoveRotSetOps.ccgraph / Graph.hh
toolbox / rotamer_set_operations / RigidBodyMoveRotSetOps.ccpack / task / PackerTask.hh
toolbox / rotamer_set_operations / RigidBodyMoveRotSetOps.ccpose / Pose.hh
toolbox / rotamer_set_operations / RigidBodyMoveRotSetOps.ccconformation / Residue.hh
toolbox / rotamer_set_operations / RigidBodyMoveRotSetOps.ccpack / dunbrack / RotamerLibrary.hh
toolbox / rotamer_set_operations / RigidBodyMoveRotSetOps.ccpack / rotamer_set / RotamerSet.hh
toolbox / rotamer_set_operations / RigidBodyMoveRotSetOps.ccpack / rotamer_set / RotamerSet_.hh
toolbox / rotamer_set_operations / RigidBodyMoveRotSetOps.ccscoring / TenANeighborGraph.hh
toolbox / rotamer_set_operations / RigidBodyMoveRotSetOps.hhpack / rotamer_set / BumpSelector.hh
toolbox / rotamer_set_operations / RigidBodyMoveRotSetOps.hhgraph / Graph.fwd.hh
toolbox / rotamer_set_operations / RigidBodyMoveRotSetOps.hhpack / task / PackerTask.fwd.hh
toolbox / rotamer_set_operations / RigidBodyMoveRotSetOps.hhpose / Pose.fwd.hh
toolbox / rotamer_set_operations / RigidBodyMoveRotSetOps.hhconformation / Residue.fwd.hh
toolbox / rotamer_set_operations / RigidBodyMoveRotSetOps.hhpack / rotamer_set / RotamerSet.fwd.hh
toolbox / rotamer_set_operations / RigidBodyMoveRotSetOps.hhpack / rotamer_set / RotamerSetOperation.hh
toolbox / rotamer_set_operations / RigidBodyMoveRotSetOps.hhscoring / ScoreFunction.fwd.hh
swa / RigidBodySampler.ccid / AtomID.hh
swa / RigidBodySampler.ccio / silent / BinaryRNASilentStruct.hh
swa / RigidBodySampler.ccscoring / hbonds / HBondOptions.hh
swa / RigidBodySampler.ccscoring / hbonds / hbonds.hh
swa / RigidBodySampler.ccscoring / hbonds / HBondSet.hh
swa / RigidBodySampler.ccpose / Pose.hh
swa / RigidBodySampler.ccchemical / ResidueTypeSet.hh
swa / RigidBodySampler.ccscoring / rms_util.hh
swa / RigidBodySampler.ccscoring / rna / RNA_CentroidInfo.hh
swa / RigidBodySampler.ccscoring / ScoreFunction.hh
swa / RigidBodySampler.ccscoring / ScoreFunctionFactory.hh
swa / RigidBodySampler.ccio / silent / SilentFileData.hh
swa / RigidBodySampler.ccio / silent / SilentStruct.hh
swa / RigidBodySampler.cckinematics / Stub.hh
swa / RigidBodySampler.cctypes.hh
swa / RigidBodySampler.ccpose / util.hh
swa / RigidBodySampler.hhpose / Pose.hh
swa / RigidBodySampler.hhconformation / Residue.fwd.hh
swa / RigidBodySampler.hhscoring / ScoreFunction.hh
swa / RigidBodySampler.hhio / silent / SilentFileData.hh
swa / RigidBodySampler.hhio / silent / SilentStruct.fwd.hh
swa / RigidBodySampler.hhtypes.hh
topology_broker / RigidChunkClaimer.cckinematics / tree / Atom.hh
topology_broker / RigidChunkClaimer.cckinematics / AtomTree.hh
topology_broker / RigidChunkClaimer.ccchemical / ChemicalManager.hh
topology_broker / RigidChunkClaimer.ccconformation / Conformation.hh
topology_broker / RigidChunkClaimer.ccid / DOF_ID.hh
topology_broker / RigidChunkClaimer.cckinematics / FoldTree.hh
topology_broker / RigidChunkClaimer.ccimport_pose / import_pose.hh
topology_broker / RigidChunkClaimer.ccpose / Pose.hh
topology_broker / RigidChunkClaimer.ccsequence / SequenceAlignment.hh
topology_broker / RigidChunkClaimer.ccutil / SwitchResidueTypeSet.hh
topology_broker / RigidChunkClaimer.ccpose / util.hh
topology_broker / RigidChunkClaimer.ccchemical / VariantType.hh
topology_broker / RigidChunkClaimer.hhpose / Pose.hh
match / downstream / RigidLigandBuilder.ccid / AtomID.hh
match / downstream / RigidLigandBuilder.ccchemical / AtomType.hh
match / downstream / RigidLigandBuilder.ccscoring / etable / count_pair / CountPairFunction.hh
match / downstream / RigidLigandBuilder.ccpose / PDBInfo.hh
match / downstream / RigidLigandBuilder.ccpose / Pose.hh
match / downstream / RigidLigandBuilder.ccconformation / Residue.hh
match / downstream / RigidLigandBuilder.hhscoring / etable / count_pair / CountPairFunction.fwd.hh
match / downstream / RigidLigandBuilder.hhconformation / Residue.fwd.hh
match / downstream / RigidLigandBuilder.hhchemical / ResidueType.fwd.hh
match / downstream / RigidLigandBuilder.hhtypes.hh
sic_dock / RigidScore.ccid / AtomID_Map.hh
sic_dock / RigidScore.ccscoring / sasa.hh
sic_dock / RigidScore.ccpose / util.hh
sic_dock / RigidScore.hhid / AtomID_Map.hh
sic_dock / RigidScore.hhpose / Pose.fwd.hh
sic_dock / RigidScore.hhkinematics / Stub.hh
sic_dock / RigidScore.hhtypes.hh
ligand_docking / RigidSearchMover.ccconformation / Conformation.hh
ligand_docking / RigidSearchMover.cckinematics / Jump.hh
ligand_docking / RigidSearchMover.ccpose / Pose.hh
ligand_docking / RigidSearchMover.ccscoring / ScoreFunction.hh
ligand_docking / RigidSearchMover.cckinematics / Stub.hh
ligand_docking / RigidSearchMover.hhpose / Pose.fwd.hh
ligand_docking / RigidSearchMover.hhscoring / ScoreFunction.fwd.hh
simple_moves / carbohydrates / RingConformationMover.cckinematics / MoveMap.hh
simple_moves / carbohydrates / RingConformationMover.ccpose / Pose.hh
simple_moves / carbohydrates / RingConformationMover.ccconformation / Residue.hh
simple_moves / carbohydrates / RingConformationMover.cctypes.hh
simple_moves / carbohydrates / RingConformationMover.hhkinematics / MoveMap.fwd.hh
simple_moves / carbohydrates / RingConformationMover.hhid / types.hh
simple_moves / carbohydrates / RingConformationMover.hhtypes.hh
simple_filters / RmsdEvaluator.ccpose / Pose.hh
simple_filters / RmsdEvaluator.ccscoring / rms_util.hh
simple_filters / RmsdEvaluator.ccio / silent / SilentStruct.hh
simple_filters / RmsdEvaluator.hhpose / Pose.fwd.hh
simple_filters / RmsdEvaluator.hhscoring / rms_util.hh
simple_filters / RmsdEvaluator.hhio / silent / silent.fwd.hh
simple_filters / RmsdEvaluatorCreator.ccimport_pose / import_pose.hh
simple_filters / RmsdEvaluatorCreator.ccpose / Pose.hh
simple_filters / RmsdEvaluatorCreator.ccio / silent / silent.fwd.hh
simple_filters / RmsdEvaluatorCreator.ccio / silent / SilentStruct.hh
simple_filters / RmsdEvaluatorCreator.hhtypes.hh
protein_interface_design / filters / RmsdFilter.ccid / AtomID.hh
protein_interface_design / filters / RmsdFilter.ccid / AtomID_Map.hh
protein_interface_design / filters / RmsdFilter.ccpose / datacache / cacheable_observers.hh
protein_interface_design / filters / RmsdFilter.ccconformation / Conformation.hh
protein_interface_design / filters / RmsdFilter.ccimport_pose / import_pose.hh
protein_interface_design / filters / RmsdFilter.ccpose / PDBInfo.hh
protein_interface_design / filters / RmsdFilter.ccpose / Pose.hh
protein_interface_design / filters / RmsdFilter.ccscoring / rms_util.hh
protein_interface_design / filters / RmsdFilter.ccscoring / rms_util.tmpl.hh
protein_interface_design / filters / RmsdFilter.ccpose / selection.hh
protein_interface_design / filters / RmsdFilter.cctypes.hh
protein_interface_design / filters / RmsdFilter.hhpose / Pose.fwd.hh
protein_interface_design / filters / RmsdFilter.hhtypes.hh
simple_filters / RmsdTargetEvaluatorCreator.ccimport_pose / import_pose.hh
simple_filters / RmsdTargetEvaluatorCreator.ccpose / Pose.hh
simple_filters / RmsdTargetEvaluatorCreator.ccchemical / ResidueType.hh
simple_filters / RmsdTargetEvaluatorCreator.ccscoring / ScoreFunction.hh
simple_filters / RmsdTargetEvaluatorCreator.ccio / silent / silent.fwd.hh
simple_filters / RmsdTargetEvaluatorCreator.ccio / silent / SilentStruct.hh
simple_filters / RmsdTargetEvaluatorCreator.hhtypes.hh
frags / RMSVallData.hhfragment / BBTorsionSRFD.hh
frags / RMSVallData.hhfragment / FragData.hh
frags / RMSVallData.hhfragment / Frame.hh
frags / RMSVallData.hhtypes.hh
swa / monte_carlo / RNA_AddMover.ccpose / Pose.hh
swa / monte_carlo / RNA_AddMover.ccconformation / ResidueFactory.hh
swa / monte_carlo / RNA_AddMover.ccchemical / ResidueTypeSet.hh
swa / monte_carlo / RNA_AddMover.ccscoring / ScoreFunction.hh
swa / monte_carlo / RNA_AddMover.cctypes.hh
swa / monte_carlo / RNA_AddMover.ccpose / util.hh
swa / monte_carlo / RNA_AddMover.ccchemical / VariantType.hh
swa / monte_carlo / RNA_AddMover.hhpose / Pose.fwd.hh
swa / monte_carlo / RNA_AddMover.hhchemical / ResidueTypeSet.fwd.hh
swa / monte_carlo / RNA_AddMover.hhscoring / ScoreFunction.fwd.hh
swa / monte_carlo / RNA_AddMover.hhtypes.hh
swa / monte_carlo / RNA_AddOrDeleteMover.ccpose / Pose.hh
swa / monte_carlo / RNA_AddOrDeleteMover.cctypes.hh
swa / monte_carlo / RNA_AddOrDeleteMover.ccpose / util.hh
swa / monte_carlo / RNA_AddOrDeleteMover.ccchemical / VariantType.hh
swa / monte_carlo / RNA_AddOrDeleteMover.hhpose / Pose.fwd.hh
swa / monte_carlo / RNA_AddOrDeleteMover.hhtypes.hh
swa / rna / RNA_AnalyticLoopCloser.cckinematics / tree / Atom.hh
swa / rna / RNA_AnalyticLoopCloser.ccid / AtomID.hh
swa / rna / RNA_AnalyticLoopCloser.cckinematics / AtomTree.hh
swa / rna / RNA_AnalyticLoopCloser.ccid / DOF_ID.hh
swa / rna / RNA_AnalyticLoopCloser.cckinematics / FoldTree.hh
swa / rna / RNA_AnalyticLoopCloser.ccid / NamedAtomID.hh
swa / rna / RNA_AnalyticLoopCloser.ccpose / Pose.hh
swa / rna / RNA_AnalyticLoopCloser.ccconformation / Residue.hh
swa / rna / RNA_AnalyticLoopCloser.ccchemical / ResidueType.hh
swa / rna / RNA_AnalyticLoopCloser.ccscoring / ScoreFunction.hh
swa / rna / RNA_AnalyticLoopCloser.cctypes.hh
swa / rna / RNA_AnalyticLoopCloser.ccchemical / VariantType.hh
swa / rna / RNA_AnalyticLoopCloser.hhkinematics / tree / Atom.fwd.hh
swa / rna / RNA_AnalyticLoopCloser.hhid / DOF_ID.fwd.hh
swa / rna / RNA_AnalyticLoopCloser.hhid / NamedAtomID.hh
swa / rna / RNA_AnalyticLoopCloser.hhpose / Pose.fwd.hh
swa / rna / RNA_AnalyticLoopCloser.hhscoring / ScoreFunction.hh
swa / rna / RNA_AnalyticLoopCloser.hhtypes.hh
rna / RNA_BasePairClassifier.ccchemical / AA.hh
rna / RNA_BasePairClassifier.ccscoring / hbonds / HBondOptions.hh
rna / RNA_BasePairClassifier.ccscoring / hbonds / hbonds.hh
rna / RNA_BasePairClassifier.ccscoring / hbonds / HBondSet.hh
rna / RNA_BasePairClassifier.ccpose / Pose.hh
rna / RNA_BasePairClassifier.ccconformation / Residue.hh
rna / RNA_BasePairClassifier.ccscoring / rna / RNA_BaseDoubletClasses.hh
rna / RNA_BasePairClassifier.ccscoring / rna / RNA_CentroidInfo.hh
rna / RNA_BasePairClassifier.ccscoring / rna / RNA_ScoringInfo.hh
rna / RNA_BasePairClassifier.ccscoring / rna / RNA_Util.hh
rna / RNA_BasePairClassifier.ccscoring / ScoreFunction.hh
rna / RNA_BasePairClassifier.ccscoring / ScoreFunctionFactory.hh
rna / RNA_BasePairClassifier.hhpose / Pose.fwd.hh
rna / RNA_BasePairClassifier.hhscoring / rna / RNA_BaseDoubletClasses.hh
rna / RNA_ChunkLibrary.ccid / AtomID.hh
rna / RNA_ChunkLibrary.ccchemical / ChemicalManager.hh
rna / RNA_ChunkLibrary.cckinematics / FoldTree.hh
rna / RNA_ChunkLibrary.ccimport_pose / import_pose.hh
rna / RNA_ChunkLibrary.cckinematics / Jump.hh
rna / RNA_ChunkLibrary.ccpose / MiniPose.fwd.hh
rna / RNA_ChunkLibrary.ccpose / MiniPose.hh
rna / RNA_ChunkLibrary.ccpose / Pose.hh
rna / RNA_ChunkLibrary.ccconformation / Residue.hh
rna / RNA_ChunkLibrary.ccchemical / ResidueType.hh
rna / RNA_ChunkLibrary.ccscoring / rms_util.hh
rna / RNA_ChunkLibrary.ccio / silent / SilentFileData.hh
rna / RNA_ChunkLibrary.cckinematics / Stub.hh
rna / RNA_ChunkLibrary.cctypes.hh
rna / RNA_ChunkLibrary.ccpose / util.hh
rna / RNA_ChunkLibrary.hhpose / MiniPose.fwd.hh
rna / RNA_ChunkLibrary.hhpose / Pose.fwd.hh
rna / RNA_ChunkLibrary.hhtypes.hh
rna / RNA_DataReader.ccpose / Pose.hh
rna / RNA_DataReader.ccscoring / rna / RNA_DataInfo.hh
rna / RNA_DataReader.ccscoring / rna / RNA_ScoringInfo.hh
rna / RNA_DataReader.ccscoring / rna / RNA_Util.hh
rna / RNA_DataReader.cctypes.hh
rna / RNA_DataReader.hhkinematics / Jump.hh
rna / RNA_DataReader.hhpose / Pose.fwd.hh
rna / RNA_DataReader.hhscoring / rna / RNA_DataInfo.hh
rna / RNA_DataReader.hhtypes.hh
swa / monte_carlo / RNA_DeleteMover.ccpose / Pose.hh
swa / monte_carlo / RNA_DeleteMover.cctypes.hh
swa / monte_carlo / RNA_DeleteMover.ccpose / util.hh
swa / monte_carlo / RNA_DeleteMover.ccchemical / VariantType.hh
swa / monte_carlo / RNA_DeleteMover.hhpose / Pose.fwd.hh
swa / monte_carlo / RNA_DeleteMover.hhtypes.hh
rna / RNA_DeNovoProtocol.ccid / AtomID.hh
rna / RNA_DeNovoProtocol.ccid / AtomID_Map.hh
rna / RNA_DeNovoProtocol.ccio / silent / BinaryRNASilentStruct.hh
rna / RNA_DeNovoProtocol.ccscoring / constraints / ConstraintSet.hh
rna / RNA_DeNovoProtocol.ccid / DOF_ID.hh
rna / RNA_DeNovoProtocol.ccscoring / Energies.hh
rna / RNA_DeNovoProtocol.ccscoring / EnergyMap.hh
rna / RNA_DeNovoProtocol.cckinematics / MoveMap.hh
rna / RNA_DeNovoProtocol.ccpose / Pose.hh
rna / RNA_DeNovoProtocol.ccio / pdb / pose_io.hh
rna / RNA_DeNovoProtocol.ccconformation / Residue.hh
rna / RNA_DeNovoProtocol.ccscoring / rms_util.hh
rna / RNA_DeNovoProtocol.ccscoring / rna / RNA_BaseDoubletClasses.hh
rna / RNA_DeNovoProtocol.ccscoring / rna / chemical_shift / RNA_ChemicalShiftPotential.hh
rna / RNA_DeNovoProtocol.ccscoring / rna / RNA_LowResolutionPotential.hh
rna / RNA_DeNovoProtocol.ccio / silent / RNA_SilentStruct.hh
rna / RNA_DeNovoProtocol.ccscoring / rna / RNA_Util.hh
rna / RNA_DeNovoProtocol.ccscoring / ScoreFunction.fwd.hh
rna / RNA_DeNovoProtocol.ccscoring / ScoreFunction.hh
rna / RNA_DeNovoProtocol.ccscoring / ScoreFunctionFactory.hh
rna / RNA_DeNovoProtocol.ccscoring / ScoreType.hh
rna / RNA_DeNovoProtocol.ccscoring / ScoringManager.hh
rna / RNA_DeNovoProtocol.cckinematics / ShortestPathInFoldTree.hh
rna / RNA_DeNovoProtocol.ccio / silent / SilentFileData.hh
rna / RNA_DeNovoProtocol.cctypes.hh
rna / RNA_DeNovoProtocol.hhscoring / constraints / ConstraintSet.fwd.hh
rna / RNA_DeNovoProtocol.hhpose / Pose.fwd.hh
rna / RNA_DeNovoProtocol.hhscoring / rna / RNA_LowResolutionPotential.hh
rna / RNA_DeNovoProtocol.hhscoring / ScoreFunction.fwd.hh
rna / RNA_DeNovoProtocol.hhio / silent / silent.fwd.hh
rna / RNA_DeNovoProtocol.hhtypes.hh
rna / RNA_FragmentMover.cckinematics / Jump.hh
rna / RNA_FragmentMover.ccpose / Pose.hh
rna / RNA_FragmentMover.ccconformation / Residue.hh
rna / RNA_FragmentMover.cctypes.hh
rna / RNA_FragmentMover.fwd.hhtypes.hh
rna / RNA_FragmentMover.hhpose / Pose.fwd.hh
rna / RNA_FragmentMover.hhtypes.hh
rna / RNA_Fragments.cctypes.hh
rna / RNA_Fragments.hhpose / Pose.fwd.hh
rna / RNA_Fragments.hhtypes.hh
rna / rna_fragments_classes.fwd.hhpose / Pose.fwd.hh
rna / rna_fragments_classes.fwd.hhtypes.hh
rna / RNA_FragmentsClasses.ccpose / Pose.hh
rna / RNA_FragmentsClasses.ccscoring / rna / RNA_Util.hh
rna / RNA_FragmentsClasses.cctypes.hh
rna / RNA_FragmentsClasses.hhpose / Pose.fwd.hh
rna / RNA_FragmentsClasses.hhtypes.hh
rna / RNA_HelixAssembler.ccchemical / AA.hh
rna / RNA_HelixAssembler.ccpose / annotated_sequence.hh
rna / RNA_HelixAssembler.ccoptimization / AtomTreeMinimizer.hh
rna / RNA_HelixAssembler.ccchemical / ChemicalManager.hh
rna / RNA_HelixAssembler.ccscoring / constraints / ConstraintSet.hh
rna / RNA_HelixAssembler.cckinematics / FoldTree.hh
rna / RNA_HelixAssembler.cckinematics / Jump.hh
rna / RNA_HelixAssembler.ccoptimization / MinimizerOptions.hh
rna / RNA_HelixAssembler.cckinematics / MoveMap.hh
rna / RNA_HelixAssembler.ccpose / Pose.hh
rna / RNA_HelixAssembler.ccconformation / Residue.hh
rna / RNA_HelixAssembler.ccconformation / ResidueFactory.hh
rna / RNA_HelixAssembler.ccchemical / ResidueTypeSet.hh
rna / RNA_HelixAssembler.ccscoring / rna / RNA_Util.hh
rna / RNA_HelixAssembler.ccscoring / ScoreFunction.hh
rna / RNA_HelixAssembler.ccscoring / ScoreFunctionFactory.hh
rna / RNA_HelixAssembler.cctypes.hh
rna / RNA_HelixAssembler.hhpose / Pose.fwd.hh
rna / RNA_HelixAssembler.hhchemical / ResidueTypeSet.fwd.hh
rna / RNA_HelixAssembler.hhscoring / ScoreFunction.fwd.hh
rna / RNA_HelixAssembler.hhtypes.hh
rna / RNA_IdealCoord.ccid / AtomID.hh
rna / RNA_IdealCoord.ccchemical / ChemicalManager.hh
rna / RNA_IdealCoord.ccconformation / Conformation.hh
rna / RNA_IdealCoord.ccimport_pose / import_pose.hh
rna / RNA_IdealCoord.ccpose / Pose.hh
rna / RNA_IdealCoord.ccchemical / ResidueTypeSet.hh
rna / RNA_IdealCoord.ccscoring / rna / RNA_FittedTorsionInfo.hh
rna / RNA_IdealCoord.ccid / TorsionID.hh
rna / RNA_IdealCoord.ccpose / util.hh
rna / RNA_IdealCoord.hhid / AtomID.fwd.hh
rna / RNA_IdealCoord.hhpose / Pose.fwd.hh
rna / RNA_IdealCoord.hhpose / Pose.hh
rna / RNA_IdealCoord.hhconformation / Residue.fwd.hh
rna / RNA_IdealCoord.hhid / TorsionID.fwd.hh
rna / RNA_IdealCoord.hhtypes.hh
rna / RNA_JumpLibrary.cctypes.hh
rna / RNA_JumpLibrary.hhkinematics / Jump.hh
rna / RNA_JumpLibrary.hhtypes.hh
rna / RNA_LoopCloser.cckinematics / tree / Atom.hh
rna / RNA_LoopCloser.ccid / AtomID.hh
rna / RNA_LoopCloser.ccid / AtomID_Map.hh
rna / RNA_LoopCloser.cckinematics / AtomTree.hh
rna / RNA_LoopCloser.ccoptimization / AtomTreeMinimizer.hh
rna / RNA_LoopCloser.ccconformation / Conformation.hh
rna / RNA_LoopCloser.ccscoring / constraints / Constraint.fwd.hh
rna / RNA_LoopCloser.ccscoring / constraints / ConstraintSet.hh
rna / RNA_LoopCloser.ccid / DOF_ID.hh
rna / RNA_LoopCloser.cckinematics / FoldTree.hh
rna / RNA_LoopCloser.ccoptimization / MinimizerOptions.hh
rna / RNA_LoopCloser.cckinematics / MoveMap.hh
rna / RNA_LoopCloser.ccpose / Pose.hh
rna / RNA_LoopCloser.ccconformation / Residue.hh
rna / RNA_LoopCloser.ccscoring / rna / RNA_Util.hh
rna / RNA_LoopCloser.ccscoring / ScoreFunction.fwd.hh
rna / RNA_LoopCloser.ccscoring / ScoreFunction.hh
rna / RNA_LoopCloser.ccscoring / ScoreFunctionFactory.hh
rna / RNA_LoopCloser.cctypes.hh
rna / RNA_LoopCloser.ccpose / util.hh
rna / RNA_LoopCloser.ccscoring / constraints / util.hh
rna / RNA_LoopCloser.ccchemical / VariantType.hh
rna / RNA_LoopCloser.hhpose / Pose.fwd.hh
rna / RNA_LoopCloser.hhscoring / ScoreFunction.fwd.hh
rna / RNA_LoopCloser.hhtypes.hh
swa / rna / RNA_LoopCloseSampler.ccid / AtomID.hh
swa / rna / RNA_LoopCloseSampler.ccio / silent / BinaryRNASilentStruct.hh
swa / rna / RNA_LoopCloseSampler.ccconformation / Conformation.hh
swa / rna / RNA_LoopCloseSampler.ccscoring / Energies.hh
swa / rna / RNA_LoopCloseSampler.ccscoring / EnergyGraph.hh
swa / rna / RNA_LoopCloseSampler.ccscoring / EnergyMap.fwd.hh
swa / rna / RNA_LoopCloseSampler.ccscoring / EnergyMap.hh
swa / rna / RNA_LoopCloseSampler.ccpose / Pose.hh
swa / rna / RNA_LoopCloseSampler.ccio / pdb / pose_io.hh
swa / rna / RNA_LoopCloseSampler.ccscoring / rms_util.tmpl.hh
swa / rna / RNA_LoopCloseSampler.ccscoring / rna / RNA_TorsionPotential.hh
swa / rna / RNA_LoopCloseSampler.ccscoring / rna / RNA_Util.hh
swa / rna / RNA_LoopCloseSampler.ccscoring / ScoreFunction.hh
swa / rna / RNA_LoopCloseSampler.ccscoring / ScoreFunctionFactory.hh
swa / rna / RNA_LoopCloseSampler.ccscoring / ScoreType.hh
swa / rna / RNA_LoopCloseSampler.ccio / silent / SilentFileData.fwd.hh
swa / rna / RNA_LoopCloseSampler.ccio / silent / SilentFileData.hh
swa / rna / RNA_LoopCloseSampler.ccid / TorsionID.hh
swa / rna / RNA_LoopCloseSampler.cctypes.hh
swa / rna / RNA_LoopCloseSampler.ccchemical / util.hh
swa / rna / RNA_LoopCloseSampler.ccpose / util.hh
swa / rna / RNA_LoopCloseSampler.ccchemical / VariantType.hh
swa / rna / RNA_LoopCloseSampler.hhpose / Pose.fwd.hh
swa / rna / RNA_LoopCloseSampler.hhscoring / ScoreFunction.fwd.hh
swa / rna / RNA_LoopCloseSampler.hhio / silent / SilentFileData.fwd.hh
swa / rna / RNA_LoopCloseSampler.hhtypes.hh
rna / RNA_MatchType.hhtypes.hh
rna / RNA_Minimizer.ccid / AtomID.hh
rna / RNA_Minimizer.ccid / AtomID_Map.hh
rna / RNA_Minimizer.ccoptimization / AtomTreeMinimizer.hh
rna / RNA_Minimizer.ccconformation / Conformation.hh
rna / RNA_Minimizer.ccscoring / constraints / ConstraintSet.fwd.hh
rna / RNA_Minimizer.ccscoring / constraints / ConstraintSet.hh
rna / RNA_Minimizer.ccid / DOF_ID.hh
rna / RNA_Minimizer.cckinematics / FoldTree.hh
rna / RNA_Minimizer.ccscoring / constraints / HarmonicFunc.hh
rna / RNA_Minimizer.ccoptimization / MinimizerOptions.hh
rna / RNA_Minimizer.cckinematics / MoveMap.hh
rna / RNA_Minimizer.ccid / NamedAtomID.hh
rna / RNA_Minimizer.ccpack / pack_rotamers.hh
rna / RNA_Minimizer.ccpack / task / PackerTask.hh
rna / RNA_Minimizer.ccpose / Pose.hh
rna / RNA_Minimizer.ccconformation / Residue.hh
rna / RNA_Minimizer.ccscoring / rna / RNA_Util.hh
rna / RNA_Minimizer.ccpack / rotamer_trials.hh
rna / RNA_Minimizer.ccscoring / ScoreFunction.fwd.hh
rna / RNA_Minimizer.ccscoring / ScoreFunction.hh
rna / RNA_Minimizer.ccscoring / ScoreFunctionFactory.hh
rna / RNA_Minimizer.ccscoring / ScoreType.hh
rna / RNA_Minimizer.ccpack / task / TaskFactory.hh
rna / RNA_Minimizer.ccid / TorsionID.hh
rna / RNA_Minimizer.cctypes.hh
rna / RNA_Minimizer.ccscoring / constraints / util.hh
rna / RNA_Minimizer.ccpose / util.hh
rna / RNA_Minimizer.hhkinematics / MoveMap.fwd.hh
rna / RNA_Minimizer.hhpose / Pose.fwd.hh
rna / RNA_Minimizer.hhscoring / ScoreFunction.hh
swa / monte_carlo / RNA_O2StarMover.ccscoring / Energies.hh
swa / monte_carlo / RNA_O2StarMover.ccscoring / EnergyGraph.hh
swa / monte_carlo / RNA_O2StarMover.ccpose / Pose.hh
swa / monte_carlo / RNA_O2StarMover.ccscoring / ScoreFunction.hh
swa / monte_carlo / RNA_O2StarMover.ccid / TorsionID.hh
swa / monte_carlo / RNA_O2StarMover.cctypes.hh
swa / monte_carlo / RNA_O2StarMover.ccpose / util.hh
swa / monte_carlo / RNA_O2StarMover.ccchemical / VariantType.hh
swa / monte_carlo / RNA_O2StarMover.hhpose / Pose.fwd.hh
swa / monte_carlo / RNA_O2StarMover.hhscoring / ScoreFunction.fwd.hh
swa / monte_carlo / RNA_O2StarMover.hhtypes.hh
rna / RNA_ProtocolUtil.ccpose / annotated_sequence.hh
rna / RNA_ProtocolUtil.cckinematics / tree / Atom.hh
rna / RNA_ProtocolUtil.ccid / AtomID.hh
rna / RNA_ProtocolUtil.ccscoring / constraints / AtomPairConstraint.hh
rna / RNA_ProtocolUtil.cckinematics / AtomTree.hh
rna / RNA_ProtocolUtil.ccchemical / ChemicalManager.hh
rna / RNA_ProtocolUtil.ccscoring / constraints / ConstraintSet.fwd.hh
rna / RNA_ProtocolUtil.ccscoring / constraints / FadeFunc.hh
rna / RNA_ProtocolUtil.ccscoring / constraints / HarmonicFunc.hh
rna / RNA_ProtocolUtil.cckinematics / MoveMap.hh
rna / RNA_ProtocolUtil.ccid / NamedAtomID.hh
rna / RNA_ProtocolUtil.ccpose / Pose.hh
rna / RNA_ProtocolUtil.ccconformation / Residue.hh
rna / RNA_ProtocolUtil.ccscoring / rna / RNA_ScoringInfo.hh
rna / RNA_ProtocolUtil.ccio / silent / RNA_SilentStruct.hh
rna / RNA_ProtocolUtil.ccscoring / rna / RNA_Util.hh
rna / RNA_ProtocolUtil.ccscoring / ScoreFunction.fwd.hh
rna / RNA_ProtocolUtil.ccscoring / ScoreFunction.hh
rna / RNA_ProtocolUtil.ccscoring / ScoreFunctionFactory.hh
rna / RNA_ProtocolUtil.ccio / silent / SilentFileData.hh
rna / RNA_ProtocolUtil.ccid / TorsionID.hh
rna / RNA_ProtocolUtil.cctypes.hh
rna / RNA_ProtocolUtil.ccpose / util.hh
rna / RNA_ProtocolUtil.ccchemical / VariantType.hh
rna / RNA_ProtocolUtil.hhkinematics / FoldTree.fwd.hh
rna / RNA_ProtocolUtil.hhkinematics / MoveMap.fwd.hh
rna / RNA_ProtocolUtil.hhpose / Pose.fwd.hh
rna / RNA_ProtocolUtil.hhconformation / Residue.fwd.hh
rna / RNA_ProtocolUtil.hhscoring / ScoreFunction.fwd.hh
rna / RNA_ProtocolUtil.hhtypes.hh
rna / RNA_Relaxer.ccscoring / constraints / ConstraintSet.hh
rna / RNA_Relaxer.cckinematics / Jump.hh
rna / RNA_Relaxer.ccpose / Pose.hh
rna / RNA_Relaxer.ccscoring / rms_util.hh
rna / RNA_Relaxer.ccscoring / ScoreFunction.fwd.hh
rna / RNA_Relaxer.ccscoring / ScoreFunction.hh
rna / RNA_Relaxer.ccscoring / ScoreFunctionFactory.hh
rna / RNA_Relaxer.ccscoring / ScoreType.hh
rna / RNA_Relaxer.cctypes.hh
rna / RNA_Relaxer.hhpose / Pose.fwd.hh
rna / RNA_Relaxer.hhtypes.hh
rna / RNA_SecStructInfo.ccchemical / AA.hh
rna / RNA_SecStructInfo.ccpose / datacache / CacheableDataType.hh
rna / RNA_SecStructInfo.ccpose / Pose.hh
rna / RNA_SecStructInfo.hhpose / Pose.fwd.hh
rna / RNA_StructureParameters.cckinematics / tree / Atom.hh
rna / RNA_StructureParameters.ccid / AtomID.hh
rna / RNA_StructureParameters.cckinematics / AtomTree.hh
rna / RNA_StructureParameters.ccscoring / constraints / ConstraintSet.fwd.hh
rna / RNA_StructureParameters.cckinematics / FoldTree.hh
rna / RNA_StructureParameters.ccid / NamedAtomID.hh
rna / RNA_StructureParameters.ccpose / Pose.hh
rna / RNA_StructureParameters.ccconformation / Residue.hh
rna / RNA_StructureParameters.ccconformation / ResidueFactory.hh
rna / RNA_StructureParameters.ccchemical / ResidueTypeSet.hh
rna / RNA_StructureParameters.ccscoring / rna / RNA_DataInfo.hh
rna / RNA_StructureParameters.ccscoring / rna / RNA_LowResolutionPotential.hh
rna / RNA_StructureParameters.ccscoring / rna / RNA_ScoringInfo.hh
rna / RNA_StructureParameters.ccscoring / rna / RNA_Util.hh
rna / RNA_StructureParameters.ccscoring / ScoreType.hh
rna / RNA_StructureParameters.ccid / TorsionID.hh
rna / RNA_StructureParameters.cctypes.hh
rna / RNA_StructureParameters.ccpose / util.hh
rna / RNA_StructureParameters.ccchemical / VariantType.hh
rna / RNA_StructureParameters.hhkinematics / FoldTree.fwd.hh
rna / RNA_StructureParameters.hhkinematics / Jump.hh
rna / RNA_StructureParameters.hhpose / Pose.fwd.hh
rna / RNA_StructureParameters.hhtypes.hh
rna / RNA_SuiteAssign.ccpose / Pose.hh
rna / RNA_SuiteAssign.ccconformation / Residue.hh
rna / RNA_SuiteAssign.ccscoring / rna / RNA_FittedTorsionInfo.hh
rna / RNA_SuiteAssign.hhpose / Pose.fwd.hh
rna / RNA_SuiteAssign.hhconformation / Residue.fwd.hh
rna / RNA_SuiteAssign.hhtypes.hh
swa / monte_carlo / RNA_SWA_MonteCarloMover.ccio / silent / BinaryRNASilentStruct.hh
swa / monte_carlo / RNA_SWA_MonteCarloMover.ccpose / Pose.hh
swa / monte_carlo / RNA_SWA_MonteCarloMover.ccconformation / Residue.hh
swa / monte_carlo / RNA_SWA_MonteCarloMover.ccscoring / rms_util.hh
swa / monte_carlo / RNA_SWA_MonteCarloMover.ccscoring / ScoreFunction.hh
swa / monte_carlo / RNA_SWA_MonteCarloMover.ccio / silent / SilentFileData.hh
swa / monte_carlo / RNA_SWA_MonteCarloMover.ccio / silent / SilentStruct.hh
swa / monte_carlo / RNA_SWA_MonteCarloMover.ccid / types.hh
swa / monte_carlo / RNA_SWA_MonteCarloMover.cctypes.hh
swa / monte_carlo / RNA_SWA_MonteCarloMover.ccpose / util.hh
swa / monte_carlo / RNA_SWA_MonteCarloMover.ccchemical / VariantType.hh
swa / monte_carlo / RNA_SWA_MonteCarloMover.hhpose / Pose.fwd.hh
swa / monte_carlo / RNA_SWA_MonteCarloMover.hhscoring / ScoreFunction.fwd.hh
swa / monte_carlo / RNA_SWA_MonteCarloMover.hhio / silent / SilentFileData.fwd.hh
swa / monte_carlo / RNA_SWA_MonteCarloMover.hhtypes.hh
swa / monte_carlo / RNA_SWA_MonteCarloUtil.ccpose / Pose.hh
swa / monte_carlo / RNA_SWA_MonteCarloUtil.cctypes.hh
swa / monte_carlo / RNA_SWA_MonteCarloUtil.ccpose / util.hh
swa / monte_carlo / RNA_SWA_MonteCarloUtil.ccchemical / VariantType.hh
swa / monte_carlo / RNA_SWA_MonteCarloUtil.hhpose / Pose.fwd.hh
swa / monte_carlo / RNA_SWA_MonteCarloUtil.hhtypes.hh
swa / monte_carlo / RNA_TorsionMover.ccpose / Pose.hh
swa / monte_carlo / RNA_TorsionMover.ccconformation / ResidueFactory.hh
swa / monte_carlo / RNA_TorsionMover.ccchemical / ResidueTypeSet.hh
swa / monte_carlo / RNA_TorsionMover.ccscoring / rna / RNA_Util.hh
swa / monte_carlo / RNA_TorsionMover.ccid / TorsionID.hh
swa / monte_carlo / RNA_TorsionMover.cctypes.hh
swa / monte_carlo / RNA_TorsionMover.ccpose / util.hh
swa / monte_carlo / RNA_TorsionMover.ccchemical / VariantType.hh
swa / monte_carlo / RNA_TorsionMover.hhpose / Pose.fwd.hh
swa / monte_carlo / RNA_TorsionMover.hhscoring / rna / RNA_FittedTorsionInfo.hh
swa / monte_carlo / RNA_TorsionMover.hhtypes.hh
rigid / RollMover.ccid / AtomID.hh
rigid / RollMover.ccpose / Pose.hh
rigid / RollMover.ccconformation / Residue.hh
rigid / RollMover.cctypes.hh
rigid / RollMover.hhpose / Pose.fwd.hh
rigid / RollMover.hhtypes.hh
sic_dock / Rose.ccid / AtomID_Map.hh
sic_dock / Rose.ccscoring / sasa.hh
sic_dock / Rose.ccpose / util.hh
sic_dock / Rose.hhid / AtomID_Map.fwd.hh
sic_dock / Rose.hhpose / Pose.fwd.hh
toolbox / pose_metric_calculators / RotamerBoltzCalculator.ccgraph / Graph.hh
toolbox / pose_metric_calculators / RotamerBoltzCalculator.ccoptimization / MinimizerOptions.hh
toolbox / pose_metric_calculators / RotamerBoltzCalculator.cckinematics / MoveMap.hh
toolbox / pose_metric_calculators / RotamerBoltzCalculator.ccpack / task / PackerTask.hh
toolbox / pose_metric_calculators / RotamerBoltzCalculator.ccpose / Pose.hh
toolbox / pose_metric_calculators / RotamerBoltzCalculator.ccpack / rotamer_set / RotamerSet.hh
toolbox / pose_metric_calculators / RotamerBoltzCalculator.ccpack / rotamer_set / RotamerSetFactory.hh
toolbox / pose_metric_calculators / RotamerBoltzCalculator.ccpack / rotamer_set / RotamerSets.hh
toolbox / pose_metric_calculators / RotamerBoltzCalculator.ccpack / task / TaskFactory.hh
toolbox / pose_metric_calculators / RotamerBoltzCalculator.ccpack / task / operation / TaskOperations.hh
toolbox / pose_metric_calculators / RotamerBoltzCalculator.cctypes.hh
toolbox / pose_metric_calculators / RotamerBoltzCalculator.hhpack / task / PackerTask.fwd.hh
toolbox / pose_metric_calculators / RotamerBoltzCalculator.hhpose / Pose.fwd.hh
toolbox / pose_metric_calculators / RotamerBoltzCalculator.hhpose / metrics / PoseMetricCalculatorBase.hh
toolbox / pose_metric_calculators / RotamerBoltzCalculator.hhconformation / Residue.fwd.hh
toolbox / pose_metric_calculators / RotamerBoltzCalculator.hhpack / rotamer_set / RotamerSet.fwd.hh
toolbox / pose_metric_calculators / RotamerBoltzCalculator.hhpack / rotamer_set / RotamerSets.fwd.hh
toolbox / pose_metric_calculators / RotamerBoltzCalculator.hhscoring / ScoreFunction.fwd.hh
toolbox / pose_metric_calculators / RotamerBoltzCalculator.hhtypes.hh
simple_filters / RotamerBoltzmannWeight.ccchemical / AA.hh
simple_filters / RotamerBoltzmannWeight.ccscoring / Energies.hh
simple_filters / RotamerBoltzmannWeight.ccscoring / EnergyGraph.hh
simple_filters / RotamerBoltzmannWeight.ccgraph / Graph.hh
simple_filters / RotamerBoltzmannWeight.ccpack / make_symmetric_task.hh
simple_filters / RotamerBoltzmannWeight.cckinematics / MoveMap.hh
simple_filters / RotamerBoltzmannWeight.ccpack / pack_rotamers.hh
simple_filters / RotamerBoltzmannWeight.ccpack / task / PackerTask.hh
simple_filters / RotamerBoltzmannWeight.ccpose / PDBInfo.hh
simple_filters / RotamerBoltzmannWeight.ccpose / Pose.hh
simple_filters / RotamerBoltzmannWeight.ccconformation / Residue.hh
simple_filters / RotamerBoltzmannWeight.ccpack / rotamer_set / RotamerSet.hh
simple_filters / RotamerBoltzmannWeight.ccpack / rotamer_set / RotamerSetFactory.hh
simple_filters / RotamerBoltzmannWeight.ccpose / selection.hh
simple_filters / RotamerBoltzmannWeight.ccpack / task / TaskFactory.hh
simple_filters / RotamerBoltzmannWeight.ccpack / task / operation / TaskOperations.hh
simple_filters / RotamerBoltzmannWeight.ccpose / symmetry / util.hh
simple_filters / RotamerBoltzmannWeight.ccpose / util.hh
simple_filters / RotamerBoltzmannWeight.hhchemical / AA.hh
simple_filters / RotamerBoltzmannWeight.hhpose / Pose.fwd.hh
simple_filters / RotamerBoltzmannWeight.hhscoring / ScoreFunction.fwd.hh
simple_filters / RotamerBoltzmannWeight.hhpack / task / TaskFactory.fwd.hh
features / RotamerBoltzmannWeightFeatures.ccpose / Pose.hh
features / RotamerBoltzmannWeightFeatures.ccscoring / ScoreFunction.hh
features / RotamerBoltzmannWeightFeatures.cctypes.hh
features / RotamerBoltzmannWeightFeatures.hhscoring / ScoreFunction.fwd.hh
features / RotamerBoltzmannWeightFeatures.hhtypes.hh
features / RotamerBoltzmannWeightFeaturesCreator.hhtypes.hh
dna / RotamerDNAHBondFilter.ccconformation / Atom.hh
dna / RotamerDNAHBondFilter.ccchemical / AtomType.hh
dna / RotamerDNAHBondFilter.ccpack / dunbrack / ChiSet.hh
dna / RotamerDNAHBondFilter.ccscoring / hbonds / constants.hh
dna / RotamerDNAHBondFilter.ccscoring / hbonds / HBEvalTuple.hh
dna / RotamerDNAHBondFilter.ccscoring / hbonds / HBondDatabase.hh
dna / RotamerDNAHBondFilter.ccscoring / hbonds / HBondOptions.hh
dna / RotamerDNAHBondFilter.ccscoring / hbonds / hbonds_geom.hh
dna / RotamerDNAHBondFilter.ccpack / task / PackerTask.hh
dna / RotamerDNAHBondFilter.ccpose / Pose.hh
dna / RotamerDNAHBondFilter.ccconformation / Residue.fwd.hh
dna / RotamerDNAHBondFilter.ccconformation / Residue.hh
dna / RotamerDNAHBondFilter.ccscoring / ScoreFunction.hh
dna / RotamerDNAHBondFilter.hhpack / dunbrack / ChiSet.fwd.hh
dna / RotamerDNAHBondFilter.hhgraph / Graph.fwd.hh
dna / RotamerDNAHBondFilter.hhscoring / hbonds / HBondDatabase.fwd.hh
dna / RotamerDNAHBondFilter.hhscoring / hbonds / HBondOptions.fwd.hh
dna / RotamerDNAHBondFilter.hhpack / task / PackerTask.fwd.hh
dna / RotamerDNAHBondFilter.hhpose / Pose.fwd.hh
dna / RotamerDNAHBondFilter.hhpack / rotamer_set / RotamerSet.fwd.hh
dna / RotamerDNAHBondFilter.hhpack / rotamer_set / RotamerSetOperation.hh
dna / RotamerDNAHBondFilter.hhscoring / ScoreFunction.fwd.hh
RotamerDump / RotamerDumpMover.ccgraph / Graph.hh
RotamerDump / RotamerDumpMover.ccpack / interaction_graph / InteractionGraphBase.hh
RotamerDump / RotamerDumpMover.ccpack / interaction_graph / InteractionGraphFactory.hh
RotamerDump / RotamerDumpMover.ccpack / pack_rotamers.hh
RotamerDump / RotamerDumpMover.ccpack / packer_neighbors.hh
RotamerDump / RotamerDumpMover.ccpack / task / PackerTask.hh
RotamerDump / RotamerDumpMover.ccpose / Pose.hh
RotamerDump / RotamerDumpMover.ccpack / interaction_graph / PrecomputedPairEnergiesInteractionGraph.hh
RotamerDump / RotamerDumpMover.ccconformation / Residue.hh
RotamerDump / RotamerDumpMover.ccpack / rotamer_set / RotamerSet.hh
RotamerDump / RotamerDumpMover.ccpack / rotamer_set / RotamerSets.hh
RotamerDump / RotamerDumpMover.ccscoring / ScoreFunction.hh
RotamerDump / RotamerDumpMover.ccpack / task / TaskFactory.hh
RotamerDump / RotamerDumpMover.hhpack / interaction_graph / InteractionGraphBase.fwd.hh
RotamerDump / RotamerDumpMover.hhpack / task / PackerTask.fwd.hh
RotamerDump / RotamerDumpMover.hhpack / rotamer_set / RotamerSets.fwd.hh
RotamerDump / RotamerDumpMover.hhscoring / ScoreFunction.fwd.hh
RotamerDump / RotamerDumpMover.hhpack / task / TaskFactory.fwd.hh
features / RotamerFeatures.ccchemical / AA.hh
features / RotamerFeatures.ccid / AtomID.hh
features / RotamerFeatures.ccchemical / ChemicalManager.hh
features / RotamerFeatures.ccpack / dunbrack / DunbrackRotamer.hh
features / RotamerFeatures.ccpose / Pose.hh
features / RotamerFeatures.ccconformation / Residue.hh
features / RotamerFeatures.ccchemical / ResidueTypeSet.hh
features / RotamerFeatures.ccpack / dunbrack / RotamericSingleResidueDunbrackLibrary.hh
features / RotamerFeatures.ccpack / dunbrack / RotamericSingleResidueDunbrackLibrary.tmpl.hh
features / RotamerFeatures.ccpack / dunbrack / RotamerLibrary.hh
features / RotamerFeatures.ccpack / dunbrack / RotamerLibraryScratchSpace.hh
features / RotamerFeatures.cctypes.hh
features / RotamerFeatures.ccconformation / util.hh
features / RotamerFeatures.hhpack / dunbrack / DunbrackRotamer.hh
features / RotamerFeatures.hhconformation / Residue.hh
features / RotamerFeatures.hhpack / dunbrack / RotamericSingleResidueDunbrackLibrary.hh
features / RotamerFeatures.hhpack / dunbrack / RotamericSingleResidueDunbrackLibrary.tmpl.hh
features / RotamerFeatures.hhpack / dunbrack / RotamerLibrary.hh
features / RotamerFeatures.hhpack / dunbrack / RotamerLibraryScratchSpace.hh
features / RotamerFeatures.hhtypes.hh
features / RotamerFeaturesCreator.hhtypes.hh
toolbox / pose_metric_calculators / RotamerRecovery.ccscoring / dssp / Dssp.hh
toolbox / pose_metric_calculators / RotamerRecovery.ccpack / dunbrack / DunbrackRotamer.fwd.hh
toolbox / pose_metric_calculators / RotamerRecovery.ccpose / Pose.hh
toolbox / pose_metric_calculators / RotamerRecovery.ccconformation / Residue.hh
toolbox / pose_metric_calculators / RotamerRecovery.ccchemical / ResidueTypeSet.fwd.hh
toolbox / pose_metric_calculators / RotamerRecovery.ccpack / dunbrack / RotamerLibrary.hh
rotamer_recovery / RotamerRecovery.cctypes.hh
toolbox / pose_metric_calculators / RotamerRecovery.cctypes.hh
toolbox / pose_metric_calculators / RotamerRecovery.hhpack / dunbrack / DunbrackRotamer.fwd.hh
rotamer_recovery / RotamerRecovery.hhpack / task / PackerTask.fwd.hh
rotamer_recovery / RotamerRecovery.hhpose / Pose.fwd.hh
toolbox / pose_metric_calculators / RotamerRecovery.hhpose / Pose.fwd.hh
rotamer_recovery / RotamerRecovery.hhscoring / ScoreFunction.fwd.hh
rotamer_recovery / RotamerRecovery.hhtypes.hh
features / RotamerRecoveryFeatures.ccpack / task / PackerTask.hh
features / RotamerRecoveryFeatures.ccpose / Pose.hh
features / RotamerRecoveryFeatures.ccscoring / ScoreFunction.hh
features / RotamerRecoveryFeatures.ccscoring / ScoreFunctionFactory.hh
features / RotamerRecoveryFeatures.ccpack / task / TaskFactory.hh
features / RotamerRecoveryFeatures.ccpack / task / operation / TaskOperations.fwd.hh
features / RotamerRecoveryFeatures.cctypes.hh
features / RotamerRecoveryFeatures.hhpose / Pose.fwd.hh
features / RotamerRecoveryFeatures.hhscoring / ScoreFunction.fwd.hh
features / RotamerRecoveryFeatures.hhpack / task / TaskFactory.hh
features / RotamerRecoveryFeatures.hhtypes.hh
features / RotamerRecoveryFeaturesCreator.hhtypes.hh
rotamer_recovery / RotamerRecoveryMover.cckinematics / Jump.hh
rotamer_recovery / RotamerRecoveryMover.ccpack / pack_rotamers.hh
rotamer_recovery / RotamerRecoveryMover.ccpack / task / PackerTask.hh
rotamer_recovery / RotamerRecoveryMover.ccconformation / Residue.hh
rotamer_recovery / RotamerRecoveryMover.ccscoring / ScoreFunction.hh
rotamer_recovery / RotamerRecoveryMover.ccscoring / ScoreFunctionFactory.hh
rotamer_recovery / RotamerRecoveryMover.ccpack / task / TaskFactory.hh
rotamer_recovery / RotamerRecoveryMover.ccpack / task / operation / TaskOperations.hh
rotamer_recovery / RotamerRecoveryMover.cctypes.hh
rotamer_recovery / RotamerRecoveryMover.hhpose / Pose.fwd.hh
rotamer_recovery / RotamerRecoveryMover.hhscoring / ScoreFunction.fwd.hh
rotamer_recovery / RotamerRecoveryMover.hhpack / task / TaskFactory.fwd.hh
rotamer_recovery / RotamerRecoveryMover.hhtypes.hh
simple_moves / RotamerTrialsMinMover.ccscoring / Energies.hh
simple_moves / RotamerTrialsMinMover.ccpack / task / PackerTask.hh
simple_moves / RotamerTrialsMinMover.ccpose / Pose.hh
simple_moves / RotamerTrialsMinMover.ccpack / rtmin.hh
simple_moves / RotamerTrialsMinMover.ccscoring / ScoreFunction.hh
simple_moves / RotamerTrialsMinMover.ccscoring / ScoreFunctionFactory.hh
simple_moves / RotamerTrialsMinMover.ccpack / task / TaskFactory.hh
simple_moves / RotamerTrialsMinMover.hhpack / task / PackerTask.fwd.hh
simple_moves / RotamerTrialsMinMover.hhpose / Pose.fwd.hh
simple_moves / RotamerTrialsMinMover.hhscoring / ScoreFunction.fwd.hh
simple_moves / RotamerTrialsMinMover.hhpack / task / TaskFactory.fwd.hh
simple_moves / RotamerTrialsMinMover.hhtypes.hh
simple_moves / RotamerTrialsMover.ccscoring / Energies.hh
simple_moves / RotamerTrialsMover.ccpack / task / PackerTask.hh
simple_moves / RotamerTrialsMover.ccpose / Pose.hh
simple_moves / RotamerTrialsMover.ccpack / rotamer_trials.hh
simple_moves / RotamerTrialsMover.ccscoring / ScoreFunction.hh
simple_moves / RotamerTrialsMover.ccpack / task / TaskFactory.hh
simple_moves / RotamerTrialsMover.hhpack / task / PackerTask.fwd.hh
simple_moves / RotamerTrialsMover.hhpose / Pose.fwd.hh
simple_moves / RotamerTrialsMover.hhscoring / ScoreFunction.fwd.hh
simple_moves / RotamerTrialsMover.hhpack / task / TaskFactory.fwd.hh
simple_moves / RotamerTrialsMover.hhtypes.hh
ligand_docking / Rotate.ccconformation / Conformation.hh
ligand_docking / Rotate.ccpose / Pose.hh
ligand_docking / Rotate.ccconformation / Residue.hh
ligand_docking / Rotate.ccscoring / rms_util.tmpl.hh
ligand_docking / Rotate.cctypes.hh
ligand_docking / Rotate.ccpose / util.hh
ligand_docking / Rotate.hhgrid / CartGrid.fwd.hh
ligand_docking / Rotate.hhkinematics / Jump.hh
ligand_docking / Rotate.hhconformation / Residue.fwd.hh
rigid / RotateJumpAxisMover.ccconformation / Conformation.hh
rigid / RotateJumpAxisMover.cckinematics / FoldTree.hh
rigid / RotateJumpAxisMover.cckinematics / Jump.hh
rigid / RotateJumpAxisMover.ccpose / Pose.hh
rigid / RotateJumpAxisMover.ccconformation / Residue.hh
rigid / RotateJumpAxisMover.cckinematics / Stub.hh
rigid / RotateJumpAxisMover.cctypes.hh
rigid / RotateJumpAxisMover.ccconformation / util.hh
rigid / RotateJumpAxisMover.hhpose / Pose.fwd.hh
rigid / RotateJumpAxisMover.hhtypes.hh
ligand_docking / Rotates.cctypes.hh
ligand_docking / Rotates.ccpose / util.hh
make_rot_lib / RotData.hhtypes.hh
simple_filters / RPF_ScoreEvaluator.ccpose / Pose.hh
simple_filters / RPF_ScoreEvaluator.hhpose / Pose.fwd.hh
rotamer_recovery / RRComparer.ccconformation / Residue.hh
rotamer_recovery / RRComparer.ccchemical / ResidueType.hh
rotamer_recovery / RRComparer.ccpack / dunbrack / RotamerLibrary.hh
rotamer_recovery / RRComparer.hhpose / Pose.fwd.hh
rotamer_recovery / RRComparer.hhconformation / Residue.fwd.hh
rotamer_recovery / RRComparer.hhtypes.hh
rotamer_recovery / RRComparerAutomorphicRMSD.ccchemical / AA.hh
rotamer_recovery / RRComparerAutomorphicRMSD.ccpose / Pose.hh
rotamer_recovery / RRComparerAutomorphicRMSD.ccconformation / Residue.hh
rotamer_recovery / RRComparerAutomorphicRMSD.ccconformation / ResidueFactory.hh
rotamer_recovery / RRComparerAutomorphicRMSD.ccchemical / ResidueType.hh
rotamer_recovery / RRComparerAutomorphicRMSD.ccchemical / ResidueTypeSet.hh
rotamer_recovery / RRComparerAutomorphicRMSD.ccscoring / rms_util.hh
rotamer_recovery / RRComparerAutomorphicRMSD.ccconformation / util.hh
rotamer_recovery / RRComparerAutomorphicRMSD.hhpose / Pose.fwd.hh
rotamer_recovery / RRComparerAutomorphicRMSD.hhtypes.hh
rotamer_recovery / RRProtocol.hhpack / task / PackerTask.fwd.hh
rotamer_recovery / RRProtocol.hhpose / Pose.fwd.hh
rotamer_recovery / RRProtocol.hhconformation / Residue.fwd.hh
rotamer_recovery / RRProtocol.hhscoring / ScoreFunction.fwd.hh
rotamer_recovery / RRProtocolMinPack.ccpack / min_pack.hh
rotamer_recovery / RRProtocolMinPack.ccpack / task / PackerTask.hh
rotamer_recovery / RRProtocolMinPack.ccpose / Pose.hh
rotamer_recovery / RRProtocolMinPack.ccscoring / ScoreFunctionFactory.hh
rotamer_recovery / RRProtocolMinPack.hhpose / Pose.fwd.hh
rotamer_recovery / RRProtocolMinPack.hhscoring / ScoreFunction.fwd.hh
rotamer_recovery / RRProtocolMover.ccpack / min_pack.hh
rotamer_recovery / RRProtocolMover.ccpack / task / PackerTask.hh
rotamer_recovery / RRProtocolMover.ccpose / Pose.hh
rotamer_recovery / RRProtocolMover.ccscoring / ScoreFunctionFactory.hh
rotamer_recovery / RRProtocolMover.hhpose / Pose.fwd.hh
rotamer_recovery / RRProtocolMover.hhscoring / ScoreFunction.fwd.hh
rotamer_recovery / RRProtocolMover.hhtypes.hh
rotamer_recovery / RRProtocolPackRotamers.ccpack / pack_rotamers.hh
rotamer_recovery / RRProtocolPackRotamers.ccpack / task / PackerTask.hh
rotamer_recovery / RRProtocolPackRotamers.ccpose / Pose.hh
rotamer_recovery / RRProtocolPackRotamers.ccscoring / ScoreFunctionFactory.hh
rotamer_recovery / RRProtocolPackRotamers.hhpose / Pose.fwd.hh
rotamer_recovery / RRProtocolPackRotamers.hhscoring / ScoreFunction.fwd.hh
rotamer_recovery / RRProtocolReferenceStructure.ccpack / task / PackerTask.hh
rotamer_recovery / RRProtocolReferenceStructure.ccpose / Pose.hh
rotamer_recovery / RRProtocolReferenceStructure.ccscoring / ScoreFunction.hh
rotamer_recovery / RRProtocolReferenceStructure.hhpose / Pose.fwd.hh
rotamer_recovery / RRProtocolReferenceStructure.hhscoring / ScoreFunction.fwd.hh
rotamer_recovery / RRProtocolReferenceStructure.hhtypes.hh
rotamer_recovery / RRProtocolRotamerTrials.ccchemical / AA.hh
rotamer_recovery / RRProtocolRotamerTrials.ccgraph / Graph.hh
rotamer_recovery / RRProtocolRotamerTrials.ccpack / packer_neighbors.hh
rotamer_recovery / RRProtocolRotamerTrials.ccpack / task / PackerTask.hh
rotamer_recovery / RRProtocolRotamerTrials.ccpose / Pose.hh
rotamer_recovery / RRProtocolRotamerTrials.ccconformation / Residue.hh
rotamer_recovery / RRProtocolRotamerTrials.ccpack / rotamer_trials.hh
rotamer_recovery / RRProtocolRotamerTrials.ccpack / rotamer_set / RotamerSet.hh
rotamer_recovery / RRProtocolRotamerTrials.ccpack / rotamer_set / RotamerSetFactory.hh
rotamer_recovery / RRProtocolRotamerTrials.ccscoring / ScoreFunctionFactory.hh
rotamer_recovery / RRProtocolRotamerTrials.hhpose / Pose.fwd.hh
rotamer_recovery / RRProtocolRotamerTrials.hhscoring / ScoreFunction.fwd.hh
rotamer_recovery / RRProtocolRTMin.ccchemical / AA.hh
rotamer_recovery / RRProtocolRTMin.ccgraph / Graph.hh
rotamer_recovery / RRProtocolRTMin.ccpack / packer_neighbors.hh
rotamer_recovery / RRProtocolRTMin.ccpack / task / PackerTask.hh
rotamer_recovery / RRProtocolRTMin.ccpose / Pose.hh
rotamer_recovery / RRProtocolRTMin.ccconformation / Residue.hh
rotamer_recovery / RRProtocolRTMin.ccpack / rotamer_trials.hh
rotamer_recovery / RRProtocolRTMin.ccpack / rotamer_set / RotamerSet.hh
rotamer_recovery / RRProtocolRTMin.ccpack / rotamer_set / RotamerSetFactory.hh
rotamer_recovery / RRProtocolRTMin.ccpack / rtmin.hh
rotamer_recovery / RRProtocolRTMin.ccscoring / ScoreFunctionFactory.hh
rotamer_recovery / RRProtocolRTMin.hhpose / Pose.fwd.hh
rotamer_recovery / RRProtocolRTMin.hhscoring / ScoreFunction.fwd.hh
rotamer_recovery / RRReporter.cctypes.hh
rotamer_recovery / RRReporter.hhpose / Pose.fwd.hh
rotamer_recovery / RRReporter.hhconformation / Residue.fwd.hh
rotamer_recovery / RRReporter.hhtypes.hh
rotamer_recovery / RRReporterHuman.ccpack / dunbrack / DunbrackRotamer.fwd.hh
rotamer_recovery / RRReporterHuman.ccpose / Pose.hh
rotamer_recovery / RRReporterHuman.ccconformation / Residue.hh
rotamer_recovery / RRReporterHuman.ccpack / dunbrack / RotamerLibrary.hh
rotamer_recovery / RRReporterHuman.cctypes.hh
rotamer_recovery / RRReporterHuman.ccpose / util.hh
rotamer_recovery / RRReporterHuman.hhpack / dunbrack / DunbrackRotamer.fwd.hh
rotamer_recovery / RRReporterHuman.hhpose / Pose.fwd.hh
rotamer_recovery / RRReporterHuman.hhconformation / Residue.fwd.hh
rotamer_recovery / RRReporterHuman.hhtypes.hh
rotamer_recovery / RRReporterSQLite.ccpose / datacache / CacheableDataType.hh
rotamer_recovery / RRReporterSQLite.ccpose / PDBInfo.hh
rotamer_recovery / RRReporterSQLite.ccpose / Pose.hh
rotamer_recovery / RRReporterSQLite.ccconformation / Residue.hh
rotamer_recovery / RRReporterSQLite.cctypes.hh
rotamer_recovery / RRReporterSQLite.hhpose / Pose.fwd.hh
rotamer_recovery / RRReporterSQLite.hhtypes.hh
toolbox / pose_metric_calculators / SaltBridgeCalculator.ccpose / Pose.hh
toolbox / pose_metric_calculators / SaltBridgeCalculator.ccconformation / Residue.hh
toolbox / pose_metric_calculators / SaltBridgeCalculator.hhpose / Pose.fwd.hh
toolbox / pose_metric_calculators / SaltBridgeCalculator.hhpose / metrics / PoseMetricCalculatorBase.hh
toolbox / pose_metric_calculators / SaltBridgeCalculator.hhtypes.hh
features / SaltBridgeFeatures.ccchemical / AA.hh
features / SaltBridgeFeatures.ccconformation / Atom.hh
features / SaltBridgeFeatures.ccpose / Pose.hh
features / SaltBridgeFeatures.ccconformation / Residue.hh
features / SaltBridgeFeatures.cckinematics / Stub.hh
features / SaltBridgeFeatures.cctypes.hh
features / SaltBridgeFeatures.hhtypes.hh
features / SaltBridgeFeaturesCreator.hhtypes.hh
match / output / SameChiBinComboGrouper.ccconformation / Residue.hh
match / output / SameChiBinComboGrouper.ccpack / dunbrack / RotamerLibrary.hh
match / output / SameChiBinComboGrouper.ccpack / dunbrack / SingleResidueDunbrackLibrary.hh
match / output / SameSequenceGrouper.ccid / AtomID.hh
match / output / SameSequenceGrouper.ccconformation / Residue.hh
match / output / SameSequenceGrouper.hhid / AtomID.fwd.hh
jumping / SameStrand.ccfragment / SecondaryStructure.hh
jumping / SameStrand.cctypes.hh
jumping / SameStrand.hhfragment / SecondaryStructure.fwd.hh
jumping / SameStrand.hhtypes.hh
docking / stateless / SaneDockingProtocol.ccpose / Pose.fwd.hh
docking / stateless / SaneDockingProtocol.ccpose / Pose.hh
simple_moves / SaneMinMover.ccoptimization / AtomTreeMinimizer.hh
simple_moves / SaneMinMover.ccoptimization / CartesianMinimizer.hh
simple_moves / SaneMinMover.ccoptimization / MinimizerOptions.hh
simple_moves / SaneMinMover.cckinematics / MoveMap.hh
simple_moves / SaneMinMover.ccpose / Pose.fwd.hh
simple_moves / SaneMinMover.ccscoring / ScoreFunction.hh
simple_moves / SaneMinMover.ccscoring / ScoreFunctionFactory.hh
simple_moves / SaneMinMover.hhoptimization / MinimizerOptions.fwd.hh
simple_moves / SaneMinMover.hhkinematics / MoveMap.fwd.hh
simple_moves / SaneMinMover.hhpose / Pose.fwd.hh
simple_moves / SaneMinMover.hhscoring / ScoreFunction.fwd.hh
simple_moves / SaneMinMover.hhtypes.hh
sasa_scores / sasapack.ccid / AtomID.hh
sasa_scores / sasapack.ccid / AtomID_Map.hh
sasa_scores / sasapack.ccscoring / Energies.hh
sasa_scores / sasapack.ccpose / Pose.hh
sasa_scores / sasapack.ccconformation / Residue.hh
sasa_scores / sasapack.ccscoring / sasa.hh
sasa_scores / sasapack.ccscoring / ScoreFunction.hh
sasa_scores / sasapack.ccscoring / ScoreFunctionFactory.hh
sasa_scores / sasapack.ccpose / symmetry / util.hh
sasa_scores / sasapack.ccpose / util.hh
sasa_scores / sasapack.ccpose / util.tmpl.hh
sasa_scores / sasapack.ccchemical / VariantType.hh
sasa_scores / sasapack.hhpose / Pose.fwd.hh
sasa_scores / sasapack.hhtypes.hh
protein_interface_design / movers / SaveAndRetrieveSidechains.cckinematics / Jump.hh
protein_interface_design / movers / SaveAndRetrieveSidechains.ccpack / task / PackerTask.hh
protein_interface_design / movers / SaveAndRetrieveSidechains.ccpose / Pose.hh
protein_interface_design / movers / SaveAndRetrieveSidechains.ccconformation / Residue.hh
protein_interface_design / movers / SaveAndRetrieveSidechains.ccscoring / ScoreFunction.hh
protein_interface_design / movers / SaveAndRetrieveSidechains.ccconformation / symmetry / SymmetricConformation.hh
protein_interface_design / movers / SaveAndRetrieveSidechains.ccconformation / symmetry / SymmetryInfo.hh
protein_interface_design / movers / SaveAndRetrieveSidechains.ccpack / task / TaskFactory.hh
protein_interface_design / movers / SaveAndRetrieveSidechains.ccconformation / symmetry / util.hh
protein_interface_design / movers / SaveAndRetrieveSidechains.ccpose / symmetry / util.hh
protein_interface_design / movers / SaveAndRetrieveSidechains.ccpose / util.hh
protein_interface_design / movers / SaveAndRetrieveSidechains.hhpose / Pose.fwd.hh
protein_interface_design / movers / SaveAndRetrieveSidechains.hhtypes.hh
rosetta_scripts / SavePoseMover.ccimport_pose / import_pose.hh
rosetta_scripts / SavePoseMover.ccpose / Pose.hh
rosetta_scripts / SavePoseMover.hhpose / Pose.fwd.hh
simple_filters / SAXSScoreFilter.ccoptimization / AtomTreeMinimizer.hh
simple_filters / SAXSScoreFilter.ccchemical / ChemicalManager.hh
simple_filters / SAXSScoreFilter.ccscoring / saxs / FormFactorManager.hh
simple_filters / SAXSScoreFilter.cckinematics / Jump.hh
simple_filters / SAXSScoreFilter.ccoptimization / MinimizerOptions.hh
simple_filters / SAXSScoreFilter.cckinematics / MoveMap.hh
simple_filters / SAXSScoreFilter.ccpack / pack_rotamers.hh
simple_filters / SAXSScoreFilter.ccpack / task / PackerTask.hh
simple_filters / SAXSScoreFilter.ccpose / Pose.hh
simple_filters / SAXSScoreFilter.ccchemical / ResidueType.hh
simple_filters / SAXSScoreFilter.ccscoring / saxs / SAXSEnergyFA.hh
simple_filters / SAXSScoreFilter.ccscoring / ScoreFunction.hh
simple_filters / SAXSScoreFilter.ccscoring / ScoreFunctionFactory.hh
simple_filters / SAXSScoreFilter.ccutil / SwitchResidueTypeSet.hh
simple_filters / SAXSScoreFilter.ccpack / task / TaskFactory.hh
simple_filters / SAXSScoreFilter.cctypes.hh
simple_filters / SAXSScoreFilter.hhpose / Pose.fwd.hh
simple_filters / SAXSScoreFilter.hhscoring / saxs / SAXSEnergyFA.hh
match / upstream / ScaffoldBuildPoint.hhpose / Pose.fwd.hh
match / upstream / ScaffoldBuildPoint.hhtypes.hh
simple_filters / ScoreCutoffFilter.ccscoring / Energies.hh
simple_filters / ScoreCutoffFilter.ccscoring / EnergyGraph.hh
simple_filters / ScoreCutoffFilter.ccscoring / EnergyMap.hh
simple_filters / ScoreCutoffFilter.ccscoring / LREnergyContainer.hh
simple_filters / ScoreCutoffFilter.ccpose / Pose.hh
simple_filters / ScoreCutoffFilter.ccchemical / ResidueType.hh
simple_filters / ScoreCutoffFilter.cctypes.hh
simple_filters / ScoreCutoffFilter.hhpose / Pose.fwd.hh
simple_filters / ScoreCutoffFilter.hhscoring / ScoreType.hh
simple_filters / ScoreEvaluator.ccscoring / constraints / ConstraintSet.hh
simple_filters / ScoreEvaluator.ccpose / Pose.hh
simple_filters / ScoreEvaluator.ccscoring / ScoreFunction.hh
simple_filters / ScoreEvaluator.ccscoring / ScoreFunctionFactory.hh
frag_picker / scores / ScoreEValuator.ccsequence / ScoringScheme.hh
frag_picker / scores / ScoreEValuator.ccsequence / ScoringSchemeFactory.hh
frag_picker / scores / ScoreEValuator.ccsequence / SequenceProfile.hh
simple_filters / ScoreEvaluator.ccio / silent / SilentStruct.hh
frag_picker / scores / ScoreEValuator.cctypes.hh
simple_filters / ScoreEvaluator.hhpose / Pose.fwd.hh
simple_filters / ScoreEvaluator.hhscoring / rms_util.hh
simple_filters / ScoreEvaluator.hhscoring / ScoreFunction.fwd.hh
simple_filters / ScoreEvaluator.hhio / silent / silent.fwd.hh
frag_picker / scores / ScoreEValuator.hhtypes.hh
features / ScoreFunctionFeatures.ccscoring / Energies.fwd.hh
features / ScoreFunctionFeatures.ccscoring / EnergiesCacheableDataType.hh
features / ScoreFunctionFeatures.ccscoring / EnergyMap.hh
features / ScoreFunctionFeatures.ccscoring / methods / EnergyMethodOptions.hh
features / ScoreFunctionFeatures.ccgraph / Graph.fwd.hh
features / ScoreFunctionFeatures.ccscoring / hbonds / HBondOptions.hh
features / ScoreFunctionFeatures.ccscoring / hbonds / hbonds.hh
features / ScoreFunctionFeatures.ccscoring / ScoreFunction.hh
features / ScoreFunctionFeatures.ccscoring / ScoreFunctionFactory.hh
features / ScoreFunctionFeatures.ccscoring / ScoreType.hh
features / ScoreFunctionFeatures.ccscoring / ScoreTypeManager.hh
features / ScoreFunctionFeatures.hhpose / Pose.fwd.hh
features / ScoreFunctionFeatures.hhscoring / ScoreFunction.fwd.hh
features / ScoreFunctionFeaturesCreator.hhtypes.hh
jd2 / parser / ScoreFunctionLoader.ccscoring / methods / EnergyMethodOptions.hh
jd2 / parser / ScoreFunctionLoader.ccscoring / hbonds / HBondOptions.hh
jd2 / parser / ScoreFunctionLoader.ccscoring / ScoreFunction.hh
jd2 / parser / ScoreFunctionLoader.ccscoring / ScoreFunctionFactory.hh
jd2 / parser / ScoreFunctionLoader.ccscoring / ScoringManager.fwd.hh
jd2 / parser / ScoreFunctionLoader.ccscoring / symmetry / SymmetricScoreFunction.hh
jd2 / parser / ScoreFunctionLoader.hhpose / Pose.fwd.hh
jd2 / ScoreMap.ccscoring / Energies.hh
jd2 / ScoreMap.ccpose / Pose.hh
jd2 / ScoreMap.ccscoring / ScoreFunction.hh
jd2 / ScoreMap.hhpose / Pose.fwd.hh
jd2 / ScoreMap.hhscoring / ScoreFunction.fwd.hh
jd2 / ScoreMap.hhtypes.hh
simple_moves / ScoreMover.ccpose / datacache / CacheableDataType.hh
simple_moves / ScoreMover.ccscoring / Energies.hh
simple_moves / ScoreMover.ccpose / Pose.hh
simple_moves / ScoreMover.ccscoring / rms_util.hh
simple_moves / ScoreMover.ccscoring / ScoreFunction.hh
simple_moves / ScoreMover.ccscoring / ScoreFunctionFactory.hh
simple_moves / ScoreMover.cctypes.hh
simple_moves / ScoreMover.ccpose / util.hh
simple_moves / ScoreMover.hhscoring / ScoreFunction.fwd.hh
simple_moves / ScoreMover.hhtypes.hh
jd2 / ScoreOnlyJobOutputter.ccio / silent / SilentFileData.hh
jd2 / ScoreOnlyJobOutputter.hhpose / Pose.fwd.hh
jd2 / ScoreOnlyJobOutputter.hhtypes.hh
features / ScoreTypeFeatures.ccscoring / Energies.fwd.hh
features / ScoreTypeFeatures.ccscoring / EnergiesCacheableDataType.hh
features / ScoreTypeFeatures.ccscoring / EnergyMap.hh
features / ScoreTypeFeatures.ccgraph / Graph.fwd.hh
features / ScoreTypeFeatures.ccscoring / hbonds / hbonds.hh
features / ScoreTypeFeatures.ccscoring / ScoreFunction.hh
features / ScoreTypeFeatures.ccscoring / ScoreFunctionFactory.hh
features / ScoreTypeFeatures.ccscoring / ScoreType.hh
features / ScoreTypeFeatures.ccscoring / ScoreTypeManager.hh
features / ScoreTypeFeatures.hhpose / Pose.fwd.hh
features / ScoreTypeFeatures.hhscoring / ScoreFunction.fwd.hh
features / ScoreTypeFeaturesCreator.hhtypes.hh
simple_filters / ScoreTypeFilter.ccchemical / AtomType.hh
simple_filters / ScoreTypeFilter.ccchemical / ChemicalManager.fwd.hh
simple_filters / ScoreTypeFilter.ccscoring / Energies.hh
simple_filters / ScoreTypeFilter.ccpose / Pose.hh
simple_filters / ScoreTypeFilter.ccscoring / ScoreFunction.hh
simple_filters / ScoreTypeFilter.ccscoring / ScoreFunctionFactory.hh
simple_filters / ScoreTypeFilter.ccscoring / ScoreType.hh
simple_filters / ScoreTypeFilter.ccscoring / ScoreTypeManager.hh
simple_filters / ScoreTypeFilter.ccutil / SwitchResidueTypeSet.hh
simple_filters / ScoreTypeFilter.hhpose / Pose.fwd.hh
simple_filters / ScoreTypeFilter.hhscoring / ScoreFunction.hh
simple_filters / ScoreTypeFilter.hhscoring / ScoreType.hh
simple_filters / ScoreTypeFilter.hhtypes.hh
qsar / scoring_grid / ScoringGridLoader.hhpose / Pose.fwd.hh
match / downstream / ScoringSecMatchRPE.ccscoring / methods / EnergyMethod.hh
match / downstream / ScoringSecMatchRPE.ccscoring / methods / EnergyMethodOptions.hh
match / downstream / ScoringSecMatchRPE.ccpose / Pose.hh
match / downstream / ScoringSecMatchRPE.ccio / pdb / pose_io.hh
match / downstream / ScoringSecMatchRPE.ccconformation / Residue.hh
match / downstream / ScoringSecMatchRPE.ccscoring / ScoreFunction.hh
match / downstream / ScoringSecMatchRPE.ccscoring / ScoreType.hh
match / downstream / ScoringSecMatchRPE.ccscoring / ScoreTypeManager.hh
match / downstream / ScoringSecMatchRPE.ccscoring / ScoringManager.hh
match / downstream / ScoringSecMatchRPE.hhpose / Pose.fwd.hh
match / downstream / ScoringSecMatchRPE.hhconformation / Residue.fwd.hh
match / downstream / ScoringSecMatchRPE.hhscoring / ScoreFunction.fwd.hh
match / downstream / ScoringSecMatchRPE.hhscoring / ScoreType.hh
match / downstream / ScoringSecMatchRPE.hhtypes.hh
hotspot_hashing / SearchPattern.hhkinematics / RT.hh
hotspot_hashing / SearchPattern.hhkinematics / Stub.hh
hotspot_hashing / SearchPattern.hhtypes.hh
hotspot_hashing / SearchPatternRotSetOp.ccgraph / Graph.hh
hotspot_hashing / SearchPatternRotSetOp.ccpack / task / PackerTask.hh
hotspot_hashing / SearchPatternRotSetOp.ccpose / Pose.hh
hotspot_hashing / SearchPatternRotSetOp.ccconformation / Residue.hh
hotspot_hashing / SearchPatternRotSetOp.ccpack / rotamer_set / RotamerSetOperation.fwd.hh
hotspot_hashing / SearchPatternRotSetOp.ccpack / rotamer_set / RotamerSetOperation.hh
hotspot_hashing / SearchPatternRotSetOp.cckinematics / RT.hh
hotspot_hashing / SearchPatternRotSetOp.ccscoring / ScoreFunction.hh
hotspot_hashing / SearchPatternRotSetOp.cckinematics / Stub.hh
hotspot_hashing / SearchPatternRotSetOp.hhgraph / Graph.fwd.hh
hotspot_hashing / SearchPatternRotSetOp.hhpack / task / PackerTask.fwd.hh
hotspot_hashing / SearchPatternRotSetOp.hhpose / Pose.fwd.hh
hotspot_hashing / SearchPatternRotSetOp.hhconformation / Residue.fwd.hh
hotspot_hashing / SearchPatternRotSetOp.hhpack / rotamer_set / RotamerSetOperation.fwd.hh
hotspot_hashing / SearchPatternRotSetOp.hhpack / rotamer_set / RotamerSetOperation.hh
hotspot_hashing / SearchPatternRotSetOp.hhscoring / ScoreFunction.fwd.hh
hotspot_hashing / SearchPatternRotSetOp.hhkinematics / Stub.fwd.hh
hotspot_hashing / SearchPatternRotSetOp.hhpack / task / operation / TaskOperation.hh
match / downstream / SecMatchEvaluatorFactory.hhpose / Pose.fwd.hh
match / downstream / SecMatchEvaluatorFactory.hhtypes.hh
match / downstream / SecMatchResiduePairEvaluator.hhconformation / Residue.fwd.hh
match / downstream / SecMatchResiduePairEvaluator.hhtypes.hh
frag_picker / scores / SecondaryIdentity.cctypes.hh
frag_picker / scores / SecondaryIdentity.hhtypes.hh
match / downstream / SecondaryMatcherToDownstreamResidue.ccpose / Pose.hh
match / downstream / SecondaryMatcherToDownstreamResidue.ccconformation / Residue.hh
match / downstream / SecondaryMatcherToDownstreamResidue.ccchemical / ResidueType.hh
match / downstream / SecondaryMatcherToDownstreamResidue.hhid / AtomID.hh
match / downstream / SecondaryMatcherToDownstreamResidue.hhconformation / Residue.fwd.hh
match / downstream / SecondaryMatcherToDownstreamResidue.hhchemical / ResidueType.fwd.hh
match / downstream / SecondaryMatcherToDownstreamResidue.hhtypes.hh
match / downstream / SecondaryMatcherToUpstreamResidue.ccconformation / Residue.hh
match / downstream / SecondaryMatcherToUpstreamResidue.ccchemical / ResidueType.hh
match / downstream / SecondaryMatcherToUpstreamResidue.hhid / AtomID.hh
match / downstream / SecondaryMatcherToUpstreamResidue.hhconformation / Residue.fwd.hh
match / downstream / SecondaryMatcherToUpstreamResidue.hhchemical / ResidueType.hh
match / downstream / SecondaryMatcherToUpstreamResidue.hhtypes.hh
enzdes / SecondaryMatchProtocol.ccpose / datacache / CacheableDataType.hh
enzdes / SecondaryMatchProtocol.ccscoring / Energies.hh
enzdes / SecondaryMatchProtocol.ccscoring / EnergyGraph.hh
enzdes / SecondaryMatchProtocol.ccio / pdb / file_data.hh
enzdes / SecondaryMatchProtocol.cckinematics / FoldTree.hh
enzdes / SecondaryMatchProtocol.ccscoring / constraints / Func.hh
enzdes / SecondaryMatchProtocol.ccpack / task / PackerTask.hh
enzdes / SecondaryMatchProtocol.ccpose / PDBInfo.hh
enzdes / SecondaryMatchProtocol.ccpose / Pose.hh
enzdes / SecondaryMatchProtocol.ccconformation / Residue.hh
enzdes / SecondaryMatchProtocol.ccchemical / ResidueType.hh
enzdes / SecondaryMatchProtocol.ccchemical / ResidueTypeSet.hh
enzdes / SecondaryMatchProtocol.ccscoring / ScoreFunction.hh
enzdes / SecondaryMatchProtocol.ccscoring / ScoreFunctionFactory.hh
enzdes / SecondaryMatchProtocol.ccpack / task / TaskFactory.hh
enzdes / SecondaryMatchProtocol.ccpose / util.hh
enzdes / SecondaryMatchProtocol.hhpose / Pose.fwd.hh
enzdes / SecondaryMatchProtocol.hhconformation / Residue.fwd.hh
enzdes / SecondaryMatchProtocol.hhchemical / ResidueType.fwd.hh
enzdes / SecondaryMatchProtocol.hhscoring / ScoreFunction.fwd.hh
frag_picker / scores / SecondarySimilarity.ccfragment / SecondaryStructure.hh
frag_picker / scores / SecondarySimilarity.cctypes.hh
frag_picker / scores / SecondarySimilarity.hhfragment / SecondaryStructure.hh
frag_picker / scores / SecondarySimilarity.hhtypes.hh
fldsgn / filters / SecondaryStructureFilter.ccutil / ABEGOManager.hh
fldsgn / filters / SecondaryStructureFilter.ccpose / Pose.hh
fldsgn / filters / SecondaryStructureFilter.cctypes.hh
fldsgn / filters / SecondaryStructureFilter.hhpose / Pose.fwd.hh
frag_picker / quota / SecondaryStructurePool.cctypes.hh
frag_picker / quota / SecondaryStructurePool.hhtypes.hh
features / SecondaryStructureSegmentFeatures.ccscoring / dssp / Dssp.hh
features / SecondaryStructureSegmentFeatures.ccpose / Pose.hh
features / SecondaryStructureSegmentFeatures.ccconformation / Residue.hh
features / SecondaryStructureSegmentFeatures.cctypes.hh
features / SecondaryStructureSegmentFeatures.hhpose / Pose.fwd.hh
features / SecondaryStructureSegmentFeatures.hhscoring / ScoreFunction.fwd.hh
features / SecondaryStructureSegmentFeaturesCreator.hhtypes.hh
seeded_abinitio / SeededAbinitio_util.ccchemical / AtomType.hh
seeded_abinitio / SeededAbinitio_util.ccpose / datacache / cacheable_observers.hh
seeded_abinitio / SeededAbinitio_util.ccpose / datacache / CacheableObserverType.hh
seeded_abinitio / SeededAbinitio_util.ccconformation / Conformation.hh
seeded_abinitio / SeededAbinitio_util.cckinematics / FoldTree.hh
seeded_abinitio / SeededAbinitio_util.cckinematics / MoveMap.hh
seeded_abinitio / SeededAbinitio_util.ccpose / datacache / ObserverCache.hh
seeded_abinitio / SeededAbinitio_util.ccpose / PDBInfo.hh
seeded_abinitio / SeededAbinitio_util.ccpose / PDBPoseMap.hh
seeded_abinitio / SeededAbinitio_util.ccpose / Pose.hh
seeded_abinitio / SeededAbinitio_util.ccconformation / Residue.hh
seeded_abinitio / SeededAbinitio_util.ccconformation / ResidueFactory.hh
seeded_abinitio / SeededAbinitio_util.ccpose / selection.hh
seeded_abinitio / SeededAbinitio_util.ccid / SequenceMapping.hh
seeded_abinitio / SeededAbinitio_util.cctypes.hh
seeded_abinitio / SeededAbinitio_util.ccpose / util.hh
seeded_abinitio / SeededAbinitio_util.hhkinematics / FoldTree.fwd.hh
seeded_abinitio / SeededAbinitio_util.hhkinematics / MoveMap.fwd.hh
seeded_abinitio / SeededAbinitio_util.hhpose / Pose.fwd.hh
seeded_abinitio / SeededAbinitio_util.hhtypes.hh
seeded_abinitio / SeedFoldTree.ccchemical / ChemicalManager.fwd.hh
seeded_abinitio / SeedFoldTree.ccconformation / Conformation.hh
seeded_abinitio / SeedFoldTree.ccscoring / Energies.hh
seeded_abinitio / SeedFoldTree.cckinematics / FoldTree.hh
seeded_abinitio / SeedFoldTree.ccimport_pose / import_pose.hh
seeded_abinitio / SeedFoldTree.ccpose / PDBInfo.hh
seeded_abinitio / SeedFoldTree.ccpose / Pose.fwd.hh
seeded_abinitio / SeedFoldTree.ccpose / Pose.hh
seeded_abinitio / SeedFoldTree.ccconformation / Residue.hh
seeded_abinitio / SeedFoldTree.ccscoring / ScoreFunction.hh
seeded_abinitio / SeedFoldTree.cctypes.hh
seeded_abinitio / SeedFoldTree.ccpose / util.hh
seeded_abinitio / SeedFoldTree.ccchemical / VariantType.hh
seeded_abinitio / SeedFoldTree.hhkinematics / FoldTree.fwd.hh
seeded_abinitio / SeedFoldTree.hhpose / Pose.hh
seeded_abinitio / SeedFoldTree.hhconformation / Residue.fwd.hh
seeded_abinitio / SeedFoldTree.hhscoring / ScoreFunction.fwd.hh
seeded_abinitio / SeedFoldTree.hhtypes.hh
seeded_abinitio / SeedSetupMover.ccchemical / AtomType.hh
seeded_abinitio / SeedSetupMover.ccconformation / Conformation.hh
seeded_abinitio / SeedSetupMover.cckinematics / MoveMap.hh
seeded_abinitio / SeedSetupMover.ccpack / task / operation / NoRepackDisulfides.hh
seeded_abinitio / SeedSetupMover.ccpack / pack_rotamers.hh
seeded_abinitio / SeedSetupMover.ccpack / task / PackerTask.hh
seeded_abinitio / SeedSetupMover.ccpose / Pose.hh
seeded_abinitio / SeedSetupMover.ccscoring / ScoreFunction.hh
seeded_abinitio / SeedSetupMover.ccpose / selection.hh
seeded_abinitio / SeedSetupMover.ccpack / task / TaskFactory.hh
seeded_abinitio / SeedSetupMover.cctypes.hh
seeded_abinitio / SeedSetupMover.hhkinematics / MoveMap.fwd.hh
seeded_abinitio / SeedSetupMover.hhpack / task / PackerTask.fwd.hh
seeded_abinitio / SeedSetupMover.hhscoring / ScoreFunction.fwd.hh
seeded_abinitio / SeedSetupMover.hhpack / task / TaskFactory.fwd.hh
seeded_abinitio / SeedSetupMover.hhtypes.hh
seeded_abinitio / SegmentHybridizer.ccoptimization / AtomTreeMinimizer.hh
seeded_abinitio / SegmentHybridizer.ccpose / datacache / CacheableDataType.hh
seeded_abinitio / SegmentHybridizer.ccoptimization / CartesianMinimizer.hh
seeded_abinitio / SegmentHybridizer.ccchemical / ChemicalManager.hh
seeded_abinitio / SegmentHybridizer.ccconformation / Conformation.hh
seeded_abinitio / SegmentHybridizer.ccfragment / ConstantLengthFragSet.hh
seeded_abinitio / SegmentHybridizer.ccscoring / dssp / Dssp.hh
seeded_abinitio / SegmentHybridizer.ccscoring / Energies.hh
seeded_abinitio / SegmentHybridizer.ccscoring / methods / EnergyMethodOptions.hh
seeded_abinitio / SegmentHybridizer.ccfragment / FragData.hh
seeded_abinitio / SegmentHybridizer.ccfragment / FragmentIO.hh
seeded_abinitio / SegmentHybridizer.ccfragment / FragSet.hh
seeded_abinitio / SegmentHybridizer.ccfragment / Frame.hh
seeded_abinitio / SegmentHybridizer.ccfragment / FrameIterator.hh
seeded_abinitio / SegmentHybridizer.ccimport_pose / import_pose.hh
seeded_abinitio / SegmentHybridizer.ccfragment / IndependentBBTorsionSRFD.hh
seeded_abinitio / SegmentHybridizer.ccoptimization / MinimizerOptions.hh
seeded_abinitio / SegmentHybridizer.cckinematics / MoveMap.hh
seeded_abinitio / SegmentHybridizer.ccpose / PDBInfo.hh
seeded_abinitio / SegmentHybridizer.ccpose / Pose.hh
seeded_abinitio / SegmentHybridizer.ccscoring / rms_util.hh
seeded_abinitio / SegmentHybridizer.ccscoring / ScoreFunction.hh
seeded_abinitio / SegmentHybridizer.ccscoring / ScoreFunctionFactory.hh
seeded_abinitio / SegmentHybridizer.ccpose / selection.hh
seeded_abinitio / SegmentHybridizer.ccpack / task / operation / TaskOperations.hh
seeded_abinitio / SegmentHybridizer.ccfragment / util.hh
seeded_abinitio / SegmentHybridizer.ccfragment / picking_old / vall / util.hh
seeded_abinitio / SegmentHybridizer.ccconformation / util.hh
seeded_abinitio / SegmentHybridizer.ccpose / util.hh
seeded_abinitio / SegmentHybridizer.hhfragment / FragData.hh
seeded_abinitio / SegmentHybridizer.hhfragment / FragSet.fwd.hh
seeded_abinitio / SegmentHybridizer.hhfragment / Frame.hh
seeded_abinitio / SegmentHybridizer.hhkinematics / MoveMap.fwd.hh
seeded_abinitio / SegmentHybridizer.hhpose / Pose.fwd.hh
seeded_abinitio / SegmentHybridizer.hhscoring / ScoreFunction.fwd.hh
seeded_abinitio / SegmentHybridizer.hhtypes.hh
forge / build / SegmentInsert.ccpose / annotated_sequence.hh
forge / build / SegmentInsert.ccid / AtomID.hh
forge / build / SegmentInsert.ccconformation / Conformation.hh
forge / build / SegmentInsert.cckinematics / constants.hh
forge / build / SegmentInsert.ccconformation / signals / LengthEvent.hh
forge / build / SegmentInsert.cckinematics / MoveMap.hh
forge / build / SegmentInsert.ccpose / PDBInfo.hh
forge / build / SegmentInsert.ccconformation / Residue.hh
forge / build / SegmentInsert.ccid / TorsionID.hh
forge / build / SegmentInsert.ccid / types.hh
forge / build / SegmentInsert.ccconformation / util.hh
forge / build / SegmentInsert.hhkinematics / MoveMap.hh
forge / build / SegmentInsert.hhpose / Pose.hh
forge / build / SegmentRebuild.ccpose / annotated_sequence.hh
forge / build / SegmentRebuild.ccconformation / Conformation.hh
forge / build / SegmentRebuild.cckinematics / constants.hh
forge / build / SegmentRebuild.cckinematics / FoldTree.hh
forge / build / SegmentRebuild.ccconformation / signals / LengthEvent.hh
forge / build / SegmentRebuild.cckinematics / MoveMap.hh
forge / build / SegmentRebuild.ccpose / PDBInfo.hh
forge / build / SegmentRebuild.ccpose / Pose.hh
forge / build / SegmentRebuild.ccconformation / ResidueFactory.hh
forge / build / SegmentRebuild.ccchemical / ResidueType.hh
forge / build / SegmentRebuild.ccid / TorsionID.hh
forge / build / SegmentRebuild.ccconformation / util.hh
forge / build / SegmentRebuild.hhconformation / signals / LengthEvent.fwd.hh
forge / build / SegmentRebuild.hhpose / Pose.fwd.hh
forge / build / SegmentSwap.ccconformation / Conformation.hh
forge / build / SegmentSwap.cckinematics / FoldTree.hh
forge / build / SegmentSwap.ccconformation / signals / LengthEvent.hh
forge / build / SegmentSwap.ccpose / PDBInfo.hh
forge / build / SegmentSwap.ccconformation / util.hh
forge / build / SegmentSwap.hhconformation / signals / LengthEvent.fwd.hh
forge / build / SegmentSwap.hhkinematics / MoveMap.hh
forge / build / SegmentSwap.hhpose / Pose.hh
toolbox / task_operations / SelectBySASAOperation.ccid / AtomID_Map.hh
toolbox / task_operations / SelectBySASAOperation.ccpack / task / PackerTask.hh
toolbox / task_operations / SelectBySASAOperation.ccpose / Pose.hh
toolbox / task_operations / SelectBySASAOperation.ccconformation / Residue.hh
toolbox / task_operations / SelectBySASAOperation.ccscoring / sasa.hh
toolbox / task_operations / SelectBySASAOperation.ccconformation / symmetry / SymmetryInfo.hh
toolbox / task_operations / SelectBySASAOperation.cctypes.hh
toolbox / task_operations / SelectBySASAOperation.ccpose / util.hh
toolbox / task_operations / SelectBySASAOperation.ccpose / symmetry / util.hh
toolbox / task_operations / SelectBySASAOperation.hhpose / Pose.fwd.hh
toolbox / task_operations / SelectBySASAOperation.hhpack / task / operation / TaskOperation.hh
toolbox / task_operations / SelectBySASAOperation.hhtypes.hh
toolbox / task_operations / SelectBySASAOperationCreator.hhpack / task / operation / TaskOperationCreator.hh
toolbox / SelectResiduesByLayer.ccid / AtomID_Map.hh
toolbox / SelectResiduesByLayer.ccchemical / AtomType.hh
toolbox / SelectResiduesByLayer.ccscoring / dssp / Dssp.hh
toolbox / SelectResiduesByLayer.ccpose / Pose.hh
toolbox / SelectResiduesByLayer.ccscoring / sasa.hh
toolbox / SelectResiduesByLayer.ccpose / util.hh
toolbox / SelectResiduesByLayer.ccpose / util.tmpl.hh
toolbox / SelectResiduesByLayer.hhchemical / AA.hh
toolbox / SelectResiduesByLayer.hhpose / Pose.fwd.hh
toolbox / SelectResiduesByLayer.hhtypes.hh
toolbox / pose_metric_calculators / SemiExplicitWaterUnsatisfiedPolarsCalculator.ccchemical / AtomType.hh
toolbox / pose_metric_calculators / SemiExplicitWaterUnsatisfiedPolarsCalculator.ccpose / metrics / CalculatorFactory.hh
toolbox / pose_metric_calculators / SemiExplicitWaterUnsatisfiedPolarsCalculator.ccconformation / Conformation.hh
toolbox / pose_metric_calculators / SemiExplicitWaterUnsatisfiedPolarsCalculator.ccscoring / hbonds / constants.hh
toolbox / pose_metric_calculators / SemiExplicitWaterUnsatisfiedPolarsCalculator.ccscoring / Energies.hh
toolbox / pose_metric_calculators / SemiExplicitWaterUnsatisfiedPolarsCalculator.ccscoring / methods / EnergyMethodOptions.hh
toolbox / pose_metric_calculators / SemiExplicitWaterUnsatisfiedPolarsCalculator.cckinematics / FoldTree.hh
toolbox / pose_metric_calculators / SemiExplicitWaterUnsatisfiedPolarsCalculator.ccscoring / hbonds / HBEvalTuple.hh
toolbox / pose_metric_calculators / SemiExplicitWaterUnsatisfiedPolarsCalculator.ccscoring / hbonds / hbonds_geom.hh
toolbox / pose_metric_calculators / SemiExplicitWaterUnsatisfiedPolarsCalculator.cckinematics / Jump.hh
toolbox / pose_metric_calculators / SemiExplicitWaterUnsatisfiedPolarsCalculator.ccpose / Pose.hh
toolbox / pose_metric_calculators / SemiExplicitWaterUnsatisfiedPolarsCalculator.ccconformation / Residue.hh
toolbox / pose_metric_calculators / SemiExplicitWaterUnsatisfiedPolarsCalculator.ccconformation / ResidueFactory.hh
toolbox / pose_metric_calculators / SemiExplicitWaterUnsatisfiedPolarsCalculator.ccchemical / ResidueTypeSet.hh
toolbox / pose_metric_calculators / SemiExplicitWaterUnsatisfiedPolarsCalculator.ccscoring / ScoreFunction.hh
toolbox / pose_metric_calculators / SemiExplicitWaterUnsatisfiedPolarsCalculator.hhid / AtomID_Map.hh
toolbox / pose_metric_calculators / SemiExplicitWaterUnsatisfiedPolarsCalculator.hhscoring / hbonds / HBondDatabase.fwd.hh
toolbox / pose_metric_calculators / SemiExplicitWaterUnsatisfiedPolarsCalculator.hhpose / Pose.fwd.hh
toolbox / pose_metric_calculators / SemiExplicitWaterUnsatisfiedPolarsCalculator.hhpose / metrics / PoseMetricCalculatorBase.hh
toolbox / pose_metric_calculators / SemiExplicitWaterUnsatisfiedPolarsCalculator.hhconformation / Residue.fwd.hh
toolbox / pose_metric_calculators / SemiExplicitWaterUnsatisfiedPolarsCalculator.hhscoring / ScoreFunction.hh
toolbox / pose_metric_calculators / SemiExplicitWaterUnsatisfiedPolarsCalculator.hhtypes.hh
dna / SeparateDnaFromNonDna.ccconformation / Conformation.hh
dna / SeparateDnaFromNonDna.cckinematics / FoldTree.hh
dna / SeparateDnaFromNonDna.ccpose / PDBInfo.hh
dna / SeparateDnaFromNonDna.ccpose / Pose.hh
dna / SeparateDnaFromNonDna.hhpose / Pose.fwd.hh
toolbox / task_operations / SeqprofConsensusOperation.ccchemical / AA.hh
toolbox / task_operations / SeqprofConsensusOperation.ccpack / task / PackerTask.hh
toolbox / task_operations / SeqprofConsensusOperation.ccpose / Pose.hh
toolbox / task_operations / SeqprofConsensusOperation.ccio / ddg / PositionDdGInfo.hh
toolbox / task_operations / SeqprofConsensusOperation.ccchemical / ResidueType.hh
toolbox / task_operations / SeqprofConsensusOperation.ccsequence / SequenceProfile.hh
toolbox / task_operations / SeqprofConsensusOperation.ccconformation / symmetry / SymmetricConformation.hh
toolbox / task_operations / SeqprofConsensusOperation.ccconformation / symmetry / SymmetryInfo.hh
toolbox / task_operations / SeqprofConsensusOperation.ccpose / symmetry / util.hh
toolbox / task_operations / SeqprofConsensusOperation.hhchemical / AA.hh
toolbox / task_operations / SeqprofConsensusOperation.hhpack / task / PackerTask.fwd.hh
toolbox / task_operations / SeqprofConsensusOperation.hhio / ddg / PositionDdGInfo.fwd.hh
toolbox / task_operations / SeqprofConsensusOperation.hhsequence / SequenceProfile.fwd.hh
toolbox / task_operations / SeqprofConsensusOperation.hhpack / task / operation / TaskOperation.hh
toolbox / task_operations / SeqprofConsensusOperation.hhtypes.hh
toolbox / task_operations / SeqprofConsensusOperationCreator.hhpack / task / operation / TaskOperationCreator.hh
topology_broker / SequenceClaimer.ccpose / annotated_sequence.hh
topology_broker / SequenceClaimer.ccchemical / ChemicalManager.hh
topology_broker / SequenceClaimer.ccpose / Pose.hh
topology_broker / SequenceClaimer.ccconformation / Residue.hh
topology_broker / SequenceClaimer.ccsequence / Sequence.hh
topology_broker / SequenceClaimer.ccsequence / util.hh
toolbox / pose_metric_calculators / SequenceComparison.ccconformation / find_neighbors.hh
toolbox / pose_metric_calculators / SequenceComparison.ccpack / task / PackerTask.hh
toolbox / pose_metric_calculators / SequenceComparison.ccconformation / PointGraph.hh
toolbox / pose_metric_calculators / SequenceComparison.ccconformation / PointGraphData.hh
toolbox / pose_metric_calculators / SequenceComparison.ccpose / Pose.hh
toolbox / pose_metric_calculators / SequenceComparison.ccconformation / Residue.hh
toolbox / pose_metric_calculators / SequenceComparison.ccpack / task / TaskFactory.hh
toolbox / pose_metric_calculators / SequenceComparison.ccpack / task / operation / TaskOperations.hh
toolbox / pose_metric_calculators / SequenceComparison.ccgraph / UpperEdgeGraph.hh
toolbox / pose_metric_calculators / SequenceComparison.hhpose / Pose.fwd.hh
toolbox / pose_metric_calculators / SequenceComparison.hhpack / task / TaskFactory.fwd.hh
toolbox / pose_metric_calculators / SequenceComparison.hhtypes.hh
constraints_additional / SequenceCoupling1BDConstraint.ccscoring / EnergyMap.hh
constraints_additional / SequenceCoupling1BDConstraint.ccpose / Pose.hh
constraints_additional / SequenceCoupling1BDConstraint.ccconformation / Residue.hh
constraints_additional / SequenceCoupling1BDConstraint.ccscoring / ScoreType.hh
constraints_additional / SequenceCoupling1BDConstraint.ccsequence / SequenceCoupling.hh
constraints_additional / SequenceCoupling1BDConstraint.ccsequence / SequenceProfile.hh
constraints_additional / SequenceCoupling1BDConstraint.ccscoring / constraints / XYZ_Func.hh
constraints_additional / SequenceCoupling1BDConstraint.hhscoring / constraints / Constraint.hh
constraints_additional / SequenceCoupling1BDConstraint.hhsequence / SequenceCoupling.fwd.hh
constraints_additional / SequenceCoupling1BDConstraint.hhscoring / constraints / SequenceProfileConstraint.hh
constraints_additional / SequenceCouplingConstraint.ccid / AtomID.hh
constraints_additional / SequenceCouplingConstraint.ccscoring / EnergyMap.hh
constraints_additional / SequenceCouplingConstraint.ccpose / Pose.hh
constraints_additional / SequenceCouplingConstraint.ccconformation / Residue.hh
constraints_additional / SequenceCouplingConstraint.ccscoring / ScoreType.hh
constraints_additional / SequenceCouplingConstraint.ccsequence / SequenceCoupling.hh
constraints_additional / SequenceCouplingConstraint.ccscoring / constraints / XYZ_Func.hh
constraints_additional / SequenceCouplingConstraint.hhid / AtomID.hh
constraints_additional / SequenceCouplingConstraint.hhscoring / constraints / Constraint.hh
constraints_additional / SequenceCouplingConstraint.hhsequence / SequenceCoupling.hh
frag_picker / scores / SequenceIdentity.cctypes.hh
frag_picker / scores / SequenceIdentity.hhtypes.hh
simple_moves / SequenceProfileMover.ccpose / Pose.hh
simple_moves / SequenceProfileMover.ccscoring / ScoreFunction.hh
simple_moves / SequenceProfileMover.ccscoring / ScoreFunctionFactory.hh
simple_moves / SequenceProfileMover.ccscoring / ScoreType.hh
simple_moves / SequenceProfileMover.ccsequence / SequenceProfile.hh
simple_moves / SequenceProfileMover.ccscoring / constraints / SequenceProfileConstraint.hh
simple_moves / SequenceProfileMover.cctypes.hh
simple_moves / SequenceProfileMover.hhpose / Pose.fwd.hh
simple_moves / SequenceProfileMover.hhtypes.hh
protein_interface_design / filters / SequenceRecoveryFilter.ccimport_pose / import_pose.hh
protein_interface_design / filters / SequenceRecoveryFilter.ccpack / task / PackerTask.hh
protein_interface_design / filters / SequenceRecoveryFilter.ccpose / Pose.hh
protein_interface_design / filters / SequenceRecoveryFilter.ccscoring / ScoreFunction.hh
protein_interface_design / filters / SequenceRecoveryFilter.ccscoring / ScoreFunctionFactory.hh
protein_interface_design / filters / SequenceRecoveryFilter.ccscoring / ScoreType.hh
protein_interface_design / filters / SequenceRecoveryFilter.ccpack / task / TaskFactory.hh
protein_interface_design / filters / SequenceRecoveryFilter.ccpose / util.hh
protein_interface_design / filters / SequenceRecoveryFilter.ccpose / symmetry / util.hh
protein_interface_design / filters / SequenceRecoveryFilter.hhpose / Pose.fwd.hh
protein_interface_design / filters / SequenceRecoveryFilter.hhpack / task / TaskFactory.fwd.hh
fldsgn / potentials / SetAACompositionPotential.ccchemical / AA.hh
fldsgn / potentials / SetAACompositionPotential.ccpose / Pose.hh
fldsgn / potentials / SetAACompositionPotential.ccscoring / ScoreFunction.hh
fldsgn / potentials / SetAACompositionPotential.ccscoring / ScoreType.hh
fldsgn / potentials / SetAACompositionPotential.hhchemical / AA.hh
fldsgn / potentials / SetAACompositionPotential.hhpose / Pose.fwd.hh
fldsgn / potentials / SetAACompositionPotential.hhscoring / ScoreFunction.fwd.hh
fldsgn / potentials / SetAACompositionPotential.hhtypes.hh
protein_interface_design / movers / SetAtomTree.ccconformation / Conformation.hh
protein_interface_design / movers / SetAtomTree.cckinematics / FoldTree.hh
protein_interface_design / movers / SetAtomTree.ccpose / PDBInfo.hh
protein_interface_design / movers / SetAtomTree.ccpose / PDBPoseMap.hh
protein_interface_design / movers / SetAtomTree.ccpose / Pose.hh
protein_interface_design / movers / SetAtomTree.ccconformation / Residue.hh
protein_interface_design / movers / SetAtomTree.ccpose / selection.hh
protein_interface_design / movers / SetAtomTree.hhkinematics / FoldTree.fwd.hh
protein_interface_design / movers / SetAtomTree.hhpose / Pose.fwd.hh
protein_interface_design / movers / SetAtomTree.hhtypes.hh
enzdes / SetCatalyticResPackBehaviorCreator.hhpack / task / operation / TaskOperationCreator.hh
simple_moves / sidechain_moves / SetChiMover.ccchemical / AA.hh
simple_moves / sidechain_moves / SetChiMover.ccpose / Pose.hh
simple_moves / sidechain_moves / SetChiMover.ccconformation / Residue.hh
simple_moves / sidechain_moves / SetChiMover.ccpose / selection.hh
simple_moves / sidechain_moves / SetChiMover.cctypes.hh
simple_moves / sidechain_moves / SetChiMover.hhpose / Pose.fwd.hh
simple_moves / sidechain_moves / SetChiMover.hhtypes.hh
toolbox / task_operations / SetIGTypeOperation.ccpack / task / PackerTask.hh
toolbox / task_operations / SetIGTypeOperation.hhpack / task / PackerTask.fwd.hh
toolbox / task_operations / SetIGTypeOperation.hhpose / Pose.fwd.hh
toolbox / task_operations / SetIGTypeOperation.hhpack / task / operation / TaskOperation.hh
toolbox / task_operations / SetIGTypeOperation.hhtypes.hh
toolbox / task_operations / SetIGTypeOperationCreator.hhpack / task / operation / TaskOperationCreator.hh
simple_moves / SetReturningPackRotamersMover.ccpack / task / PackerTask.hh
simple_moves / SetReturningPackRotamersMover.ccpose / Pose.hh
simple_moves / SetReturningPackRotamersMover.ccscoring / ScoreFunction.hh
simple_moves / SetReturningPackRotamersMover.ccscoring / ScoreFunctionFactory.hh
simple_moves / SetReturningPackRotamersMover.ccpack / task / TaskFactory.hh
simple_moves / SetReturningPackRotamersMover.hhpack / task / PackerTask.fwd.hh
simple_moves / SetReturningPackRotamersMover.hhpose / Pose.fwd.hh
simple_moves / SetReturningPackRotamersMover.hhscoring / ScoreFunction.fwd.hh
simple_moves / SetReturningPackRotamersMover.hhtypes.hh
fldsgn / potentials / SetSecStructEnergies.ccscoring / dssp / Dssp.hh
fldsgn / potentials / SetSecStructEnergies.ccpose / Pose.hh
fldsgn / potentials / SetSecStructEnergies.ccscoring / ScoreFunction.hh
fldsgn / potentials / SetSecStructEnergies.ccscoring / ScoreFunctionFactory.hh
fldsgn / potentials / SetSecStructEnergies.ccscoring / ScoreType.hh
fldsgn / potentials / SetSecStructEnergies.ccconformation / symmetry / SymmetricConformation.hh
fldsgn / potentials / SetSecStructEnergies.ccconformation / symmetry / SymmetryInfo.hh
fldsgn / potentials / SetSecStructEnergies.ccpose / symmetry / util.hh
fldsgn / potentials / SetSecStructEnergies.hhpose / Pose.fwd.hh
fldsgn / potentials / SetSecStructEnergies.hhscoring / ScoreFunction.fwd.hh
fldsgn / potentials / SetSecStructEnergies.hhconformation / symmetry / SymmetryInfo.fwd.hh
fldsgn / potentials / SetSecStructEnergies.hhtypes.hh
protein_interface_design / movers / SetTemperatureFactor.cckinematics / Jump.hh
protein_interface_design / movers / SetTemperatureFactor.ccpose / PDBInfo.hh
protein_interface_design / movers / SetTemperatureFactor.ccpose / Pose.hh
protein_interface_design / movers / SetTemperatureFactor.ccconformation / Residue.hh
protein_interface_design / movers / SetTemperatureFactor.hhpose / Pose.fwd.hh
simple_moves / SetTorsion.ccchemical / AA.hh
simple_moves / SetTorsion.cckinematics / Jump.hh
simple_moves / SetTorsion.ccpose / Pose.hh
simple_moves / SetTorsion.ccconformation / Residue.hh
simple_moves / SetTorsion.ccpose / selection.hh
simple_moves / SetTorsion.cctypes.hh
simple_moves / SetTorsion.hhpose / Pose.fwd.hh
simple_moves / SetTorsion.hhtypes.hh
electron_density / SetupForDensityScoringMover.ccchemical / AA.hh
electron_density / SetupForDensityScoringMover.ccscoring / electron_density / ElectronDensity.hh
electron_density / SetupForDensityScoringMover.cckinematics / Jump.hh
electron_density / SetupForDensityScoringMover.ccconformation / Residue.hh
electron_density / SetupForDensityScoringMover.cctypes.hh
electron_density / SetupForDensityScoringMover.ccpose / util.hh
electron_density / SetupForDensityScoringMover.ccscoring / electron_density / util.hh
electron_density / SetupForDensityScoringMover.hhpose / Pose.fwd.hh
electron_density / SetupForDensityScoringMover.hhscoring / ScoreFunction.fwd.hh
electron_density / SetupForDensityScoringMover.hhtypes.hh
fibril / SetupForFibrilMover.ccpose / symmetry / util.hh
fibril / SetupForFibrilMover.hhkinematics / Jump.hh
fibril / SetupForFibrilMover.hhpose / Pose.fwd.hh
simple_moves / symmetry / SetupForSymmetryMover.ccpose / PDBInfo.hh
simple_moves / symmetry / SetupForSymmetryMover.ccpose / Pose.hh
simple_moves / symmetry / SetupForSymmetryMover.ccconformation / symmetry / SymmData.hh
simple_moves / symmetry / SetupForSymmetryMover.ccscoring / symmetry / SymmetricScoreFunction.hh
simple_moves / symmetry / SetupForSymmetryMover.ccpose / symmetry / util.hh
simple_moves / symmetry / SetupForSymmetryMover.hhpose / Pose.fwd.hh
simple_moves / symmetry / SetupForSymmetryMover.hhconformation / symmetry / SymmData.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.ccchemical / AA.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.ccscoring / constraints / AmbiguousConstraint.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.ccid / AtomID_Map.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.ccscoring / constraints / BackboneStubConstraint.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.ccchemical / ChemicalManager.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.ccconformation / Conformation.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.ccscoring / constraints / Constraint.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.ccscoring / constraints / ConstraintSet.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.cckinematics / FoldTree.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.ccfragment / FragSet.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.ccscoring / constraints / HarmonicFunc.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.ccimport_pose / import_pose.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.cckinematics / Jump.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.ccpack / pack_rotamers.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.ccpack / task / PackerTask.fwd.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.ccpack / task / PackerTask.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.ccpose / Pose.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.ccio / pdb / pose_io.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.ccpack / task / ResfileReader.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.ccconformation / Residue.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.ccconformation / ResidueFactory.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.ccchemical / ResidueType.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.ccchemical / ResidueTypeSet.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.ccscoring / ScoreFunction.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.ccscoring / ScoreType.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.ccio / silent / silent.fwd.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.ccio / silent / SilentStructFactory.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.ccpack / task / TaskFactory.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.cctypes.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.ccscoring / electron_density / util.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.ccpose / util.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.hhscoring / constraints / Constraint.fwd.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.hhpose / Pose.fwd.hh
protein_interface_design / movers / SetupHotspotConstraintsLoopsMover.hhtypes.hh
protein_interface_design / movers / SetupHotspotConstraintsMover.ccscoring / constraints / ConstraintSet.hh
protein_interface_design / movers / SetupHotspotConstraintsMover.ccpose / Pose.hh
protein_interface_design / movers / SetupHotspotConstraintsMover.ccscoring / ScoreFunction.hh
protein_interface_design / movers / SetupHotspotConstraintsMover.ccscoring / ScoreType.hh
protein_interface_design / movers / SetupHotspotConstraintsMover.cctypes.hh
protein_interface_design / movers / SetupHotspotConstraintsMover.hhpose / Pose.fwd.hh
protein_interface_design / movers / SetupHotspotConstraintsMover.hhtypes.hh
simple_moves / symmetry / SetupNCSMover.ccid / AtomID.hh
simple_moves / symmetry / SetupNCSMover.ccconformation / Conformation.hh
simple_moves / symmetry / SetupNCSMover.ccscoring / constraints / DihedralPairConstraint.hh
simple_moves / symmetry / SetupNCSMover.ccscoring / constraints / DistancePairConstraint.hh
simple_moves / symmetry / SetupNCSMover.ccscoring / constraints / HarmonicFunc.hh
simple_moves / symmetry / SetupNCSMover.ccpose / Pose.hh
simple_moves / symmetry / SetupNCSMover.ccconformation / Residue.hh
simple_moves / symmetry / SetupNCSMover.ccpose / selection.hh
simple_moves / symmetry / SetupNCSMover.ccscoring / constraints / TopOutFunc.hh
simple_moves / symmetry / SetupNCSMover.ccid / TorsionID.hh
simple_moves / symmetry / SetupNCSMover.hhpose / Pose.fwd.hh
pb_potential / SetupPoissonBoltzmannPotential.ccpose / datacache / CacheableDataType.hh
pb_potential / SetupPoissonBoltzmannPotential.ccscoring / methods / PoissonBoltzmannEnergy.hh
pb_potential / SetupPoissonBoltzmannPotential.ccpose / Pose.hh
pb_potential / SetupPoissonBoltzmannPotential.ccconformation / Residue.hh
pb_potential / SetupPoissonBoltzmannPotential.ccscoring / ScoreFunction.hh
pb_potential / SetupPoissonBoltzmannPotential.hhpose / Pose.fwd.hh
pb_potential / SetupPoissonBoltzmannPotential.hhscoring / ScoreFunction.fwd.hh
pb_potential / SetupPoissonBoltzmannPotential.hhscoring / ScoreType.hh
pb_potential / SetupPoissonBoltzmannPotential.hhtypes.hh
simple_moves / ShakeStructureMover.ccchemical / AA.hh
simple_moves / ShakeStructureMover.ccid / AtomID.hh
simple_moves / ShakeStructureMover.ccscoring / constraints / AtomPairConstraint.hh
simple_moves / ShakeStructureMover.ccoptimization / AtomTreeMinimizer.hh
simple_moves / ShakeStructureMover.ccscoring / constraints / Constraints.hh
simple_moves / ShakeStructureMover.ccscoring / constraints / ConstraintSet.fwd.hh
simple_moves / ShakeStructureMover.ccscoring / constraints / ConstraintSet.hh
simple_moves / ShakeStructureMover.ccid / DOF_ID.hh
simple_moves / ShakeStructureMover.ccscoring / constraints / Func.hh
simple_moves / ShakeStructureMover.ccscoring / constraints / HarmonicFunc.hh
simple_moves / ShakeStructureMover.cckinematics / Jump.hh
simple_moves / ShakeStructureMover.ccoptimization / MinimizerOptions.hh
simple_moves / ShakeStructureMover.cckinematics / MoveMap.hh
simple_moves / ShakeStructureMover.ccpose / Pose.fwd.hh
simple_moves / ShakeStructureMover.ccpose / Pose.hh
simple_moves / ShakeStructureMover.ccconformation / Residue.hh
simple_moves / ShakeStructureMover.ccchemical / ResidueTypeSet.fwd.hh
simple_moves / ShakeStructureMover.ccscoring / rms_util.hh
simple_moves / ShakeStructureMover.ccscoring / ScoreFunction.hh
simple_moves / ShakeStructureMover.ccscoring / ScoreFunctionFactory.hh
simple_moves / ShakeStructureMover.cctypes.hh
simple_moves / ShakeStructureMover.hhpose / Pose.fwd.hh
simple_moves / ShakeStructureMover.hhscoring / ScoreFunction.fwd.hh
simple_moves / ShakeStructureMover.hhtypes.hh
simple_filters / ShapeComplementarityFilter.ccpose / Pose.hh
simple_filters / ShapeComplementarityFilter.ccconformation / Residue.hh
simple_filters / ShapeComplementarityFilter.ccpose / selection.hh
simple_filters / ShapeComplementarityFilter.ccscoring / sc / ShapeComplementarityCalculator.hh
simple_filters / ShapeComplementarityFilter.ccconformation / symmetry / SymmetryInfo.hh
simple_filters / ShapeComplementarityFilter.cctypes.hh
simple_filters / ShapeComplementarityFilter.ccpose / symmetry / util.hh
simple_filters / ShapeComplementarityFilter.hhpose / Pose.fwd.hh
simple_filters / ShapeComplementarityFilter.hhscoring / sc / ShapeComplementarityCalculator.hh
loops / loop_mover / refine / ShearMinCCDTrial.ccoptimization / AtomTreeMinimizer.hh
loops / loop_mover / refine / ShearMinCCDTrial.ccoptimization / Minimizer.hh
loops / loop_mover / refine / ShearMinCCDTrial.cckinematics / MoveMap.hh
loops / loop_mover / refine / ShearMinCCDTrial.ccpose / Pose.hh
loops / loop_mover / refine / ShearMinCCDTrial.ccpack / rotamer_trials.hh
loops / loop_mover / refine / ShearMinCCDTrial.ccscoring / ScoreFunction.hh
loops / loop_mover / refine / ShearMinCCDTrial.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
loops / loop_mover / refine / ShearMinCCDTrial.ccpack / task / TaskFactory.hh
loops / loop_mover / refine / ShearMinCCDTrial.ccpose / symmetry / util.hh
loops / loop_mover / refine / ShearMinCCDTrial.hhoptimization / AtomTreeMinimizer.fwd.hh
loops / loop_mover / refine / ShearMinCCDTrial.hhoptimization / MinimizerOptions.fwd.hh
fldsgn / topology / Sheet.ccid / AtomID_Map.hh
fldsgn / topology / Sheet.ccgraph / DisjointSets.hh
fldsgn / topology / Sheet.ccscoring / sasa.hh
fldsgn / topology / Sheet.ccpose / util.hh
fldsgn / topology / Sheet.ccpose / util.tmpl.hh
fldsgn / topology / Sheet.hhpose / Pose.fwd.hh
fldsgn / topology / Sheet.hhtypes.hh
jumping / SheetBuilder.cckinematics / FoldTree.hh
jumping / SheetBuilder.ccscoring / dssp / PairingsList.hh
jumping / SheetBuilder.ccfragment / SecondaryStructure.hh
jumping / SheetBuilder.cctypes.hh
jumping / SheetBuilder.hhkinematics / FoldTree.fwd.hh
jumping / SheetBuilder.hhscoring / dssp / PairingsList.hh
jumping / SheetBuilder.hhpose / Pose.fwd.hh
jumping / SheetBuilder.hhfragment / SecondaryStructure.fwd.hh
jumping / SheetBuilder.hhtypes.hh
fldsgn / SheetConstraintsRCG.ccscoring / constraints / AngleConstraint.hh
fldsgn / SheetConstraintsRCG.ccscoring / constraints / AtomPairConstraint.hh
fldsgn / SheetConstraintsRCG.ccscoring / constraints / BoundConstraint.hh
fldsgn / SheetConstraintsRCG.ccscoring / constraints / DihedralConstraint.hh
fldsgn / SheetConstraintsRCG.ccpose / Pose.hh
fldsgn / SheetConstraintsRCG.ccconformation / Residue.hh
fldsgn / SheetConstraintsRCG.ccchemical / ResidueType.hh
fldsgn / SheetConstraintsRCG.ccscoring / constraints / ScalarWeightedFunc.hh
fldsgn / SheetConstraintsRCG.ccid / SequenceMapping.hh
fldsgn / SheetConstraintsRCG.ccid / types.hh
fldsgn / SheetConstraintsRCG.hhpose / Pose.fwd.hh
fldsgn / SheetConstraintsRCG.hhtypes.hh
simple_filters / SheetFilter.ccpose / Pose.hh
simple_filters / SheetFilter.ccconformation / Residue.hh
simple_filters / SheetFilter.cctypes.hh
simple_filters / SheetFilter.hhpose / Pose.fwd.hh
simple_filters / SheetFilter.hhtypes.hh
fldsgn / filters / SheetTopologyFilter.ccscoring / dssp / Dssp.hh
fldsgn / filters / SheetTopologyFilter.ccpose / Pose.hh
fldsgn / filters / SheetTopologyFilter.cctypes.hh
fldsgn / filters / SheetTopologyFilter.hhpose / Pose.fwd.hh
nonlocal / SheetTranslate.ccconformation / Conformation.hh
nonlocal / SheetTranslate.cckinematics / FoldTree.hh
nonlocal / SheetTranslate.cckinematics / Jump.hh
nonlocal / SheetTranslate.ccid / NamedAtomID.hh
nonlocal / SheetTranslate.ccpose / Pose.hh
nonlocal / SheetTranslate.cckinematics / Stub.hh
nonlocal / SheetTranslate.hhpose / Pose.fwd.hh
loops / loop_closure / ccd / ShortLoopClosure.ccpose / annotated_sequence.hh
loops / loop_closure / ccd / ShortLoopClosure.ccchemical / ChemicalManager.hh
loops / loop_closure / ccd / ShortLoopClosure.cckinematics / FoldTree.hh
loops / loop_closure / ccd / ShortLoopClosure.ccfragment / FragSet.hh
loops / loop_closure / ccd / ShortLoopClosure.ccfragment / Frame.hh
loops / loop_closure / ccd / ShortLoopClosure.ccfragment / FrameList.hh
loops / loop_closure / ccd / ShortLoopClosure.cckinematics / MoveMap.hh
loops / loop_closure / ccd / ShortLoopClosure.ccpose / Pose.hh
loops / loop_closure / ccd / ShortLoopClosure.ccscoring / ScoreFunction.hh
loops / loop_closure / ccd / ShortLoopClosure.ccscoring / ScoreType.hh
protein_interface_design / movers / ShoveResidueMover.cckinematics / FoldTree.hh
protein_interface_design / movers / ShoveResidueMover.ccgraph / Graph.hh
protein_interface_design / movers / ShoveResidueMover.cckinematics / Jump.hh
protein_interface_design / movers / ShoveResidueMover.ccpack / task / PackerTask.hh
protein_interface_design / movers / ShoveResidueMover.ccpose / Pose.hh
protein_interface_design / movers / ShoveResidueMover.ccpack / rotamer_set / RotamerSetFactory.hh
protein_interface_design / movers / ShoveResidueMover.ccpose / selection.hh
protein_interface_design / movers / ShoveResidueMover.ccpack / task / TaskFactory.hh
protein_interface_design / movers / ShoveResidueMover.ccpose / util.hh
protein_interface_design / movers / ShoveResidueMover.hhpose / Pose.fwd.hh
protein_interface_design / movers / ShoveResidueMover.hhtypes.hh
jd2 / ShuffleJobDistributor.hhtypes.hh
sic_dock / SICFast.ccid / AtomID_Map.hh
sic_dock / SICFast.ccscoring / constraints / Func.hh
sic_dock / SICFast.ccscoring / sasa.hh
sic_dock / SICFast.ccpose / util.hh
sic_dock / SICFast.hhid / AtomID_Map.hh
sic_dock / SICFast.hhpose / Pose.fwd.hh
sic_dock / SICFast.hhkinematics / Stub.fwd.hh
sic_dock / SICFast.hhtypes.hh
hotspot_hashing / SICSearchPattern.ccpose / Pose.hh
hotspot_hashing / SICSearchPattern.ccconformation / Residue.hh
hotspot_hashing / SICSearchPattern.ccconformation / ResidueFactory.hh
hotspot_hashing / SICSearchPattern.ccchemical / ResidueType.hh
hotspot_hashing / SICSearchPattern.ccchemical / ResidueTypeSet.hh
hotspot_hashing / SICSearchPattern.cckinematics / RT.hh
hotspot_hashing / SICSearchPattern.cckinematics / Stub.hh
hotspot_hashing / SICSearchPattern.ccpack / task / TaskFactory.hh
hotspot_hashing / SICSearchPattern.cctypes.hh
hotspot_hashing / SICSearchPattern.hhpose / Pose.hh
hotspot_hashing / SICSearchPattern.hhkinematics / Stub.hh
hotspot_hashing / SICSearchPattern.hhpack / task / TaskFactory.fwd.hh
hotspot_hashing / SICSearchPattern.hhtypes.hh
frag_picker / SidechainContactDistCutoff.ccchemical / AA.hh
frag_picker / SidechainContactDistCutoff.cctypes.hh
frag_picker / SidechainContactDistCutoff.hhtypes.hh
simple_moves / sidechain_moves / SidechainMCMover.ccpack / task / PackerTask.hh
simple_moves / sidechain_moves / SidechainMCMover.ccpose / Pose.hh
simple_moves / sidechain_moves / SidechainMCMover.ccconformation / Residue.hh
simple_moves / sidechain_moves / SidechainMCMover.ccchemical / ResidueType.hh
simple_moves / sidechain_moves / SidechainMCMover.ccscoring / ScoreFunction.hh
simple_moves / sidechain_moves / SidechainMCMover.ccpack / interaction_graph / SimpleInteractionGraph.hh
simple_moves / sidechain_moves / SidechainMCMover.ccpack / task / TaskFactory.hh
simple_moves / sidechain_moves / SidechainMCMover.ccpack / task / operation / TaskOperation.hh
simple_moves / sidechain_moves / SidechainMCMover.cctypes.hh
simple_moves / sidechain_moves / SidechainMCMover.hhpack / task / PackerTask.fwd.hh
simple_moves / sidechain_moves / SidechainMCMover.hhpose / Pose.fwd.hh
simple_moves / sidechain_moves / SidechainMCMover.hhchemical / ResidueType.fwd.hh
simple_moves / sidechain_moves / SidechainMCMover.hhpack / dunbrack / RotamerLibrary.fwd.hh
simple_moves / sidechain_moves / SidechainMCMover.hhpack / dunbrack / RotamerLibraryScratchSpace.fwd.hh
simple_moves / sidechain_moves / SidechainMCMover.hhscoring / ScoreFunction.hh
simple_moves / sidechain_moves / SidechainMCMover.hhpack / interaction_graph / SimpleInteractionGraph.fwd.hh
canonical_sampling / SidechainMetropolisHastingsMover.cckinematics / MoveMap.hh
canonical_sampling / SidechainMetropolisHastingsMover.ccpose / Pose.hh
canonical_sampling / SidechainMetropolisHastingsMover.ccconformation / Residue.hh
canonical_sampling / SidechainMetropolisHastingsMover.ccscoring / ScoreFunction.hh
canonical_sampling / SidechainMetropolisHastingsMover.ccpack / interaction_graph / SimpleInteractionGraph.hh
canonical_sampling / SidechainMetropolisHastingsMover.cctypes.hh
canonical_sampling / SidechainMetropolisHastingsMover.hhpose / Pose.fwd.hh
canonical_sampling / SidechainMetropolisHastingsMover.hhtypes.hh
docking / SidechainMinMover.cckinematics / FoldTree.hh
docking / SidechainMinMover.cckinematics / MoveMap.hh
docking / SidechainMinMover.ccpack / task / PackerTask.hh
docking / SidechainMinMover.ccpose / Pose.hh
docking / SidechainMinMover.ccscoring / ScoreFunction.hh
docking / SidechainMinMover.ccscoring / ScoreFunctionFactory.hh
docking / SidechainMinMover.ccpack / task / TaskFactory.hh
docking / SidechainMinMover.hhkinematics / MoveMap.fwd.hh
docking / SidechainMinMover.hhpack / task / PackerTask.hh
simple_moves / sidechain_moves / SidechainMover.ccconformation / Conformation.hh
simple_moves / sidechain_moves / SidechainMover.ccid / DOF_ID_Range.hh
simple_moves / sidechain_moves / SidechainMover.ccpack / dunbrack / DunbrackRotamer.hh
simple_moves / sidechain_moves / SidechainMover.ccpack / task / PackerTask.hh
simple_moves / sidechain_moves / SidechainMover.ccpose / Pose.hh
simple_moves / sidechain_moves / SidechainMover.ccconformation / Residue.hh
simple_moves / sidechain_moves / SidechainMover.ccconformation / ResidueFactory.hh
simple_moves / sidechain_moves / SidechainMover.ccchemical / ResidueType.hh
simple_moves / sidechain_moves / SidechainMover.ccpack / dunbrack / RotamerLibraryScratchSpace.hh
simple_moves / sidechain_moves / SidechainMover.ccpack / dunbrack / SingleResidueDunbrackLibrary.hh
simple_moves / sidechain_moves / SidechainMover.ccpack / task / TaskFactory.hh
simple_moves / sidechain_moves / SidechainMover.ccpack / task / operation / TaskOperations.hh
simple_moves / sidechain_moves / SidechainMover.ccid / TorsionID.hh
simple_moves / sidechain_moves / SidechainMover.ccid / TorsionID_Range.hh
simple_moves / sidechain_moves / SidechainMover.cctypes.hh
simple_moves / sidechain_moves / SidechainMover.hhid / DOF_ID_Range.fwd.hh
simple_moves / sidechain_moves / SidechainMover.hhpack / dunbrack / DunbrackRotamer.fwd.hh
simple_moves / sidechain_moves / SidechainMover.hhpack / task / PackerTask.fwd.hh
simple_moves / sidechain_moves / SidechainMover.hhpose / Pose.fwd.hh
simple_moves / sidechain_moves / SidechainMover.hhchemical / ResidueType.fwd.hh
simple_moves / sidechain_moves / SidechainMover.hhpack / dunbrack / RotamerLibrary.fwd.hh
simple_moves / sidechain_moves / SidechainMover.hhpack / dunbrack / RotamerLibraryScratchSpace.fwd.hh
simple_moves / sidechain_moves / SidechainMover.hhpack / task / TaskFactory.fwd.hh
simple_moves / sidechain_moves / SidechainMoverBase.ccconformation / Conformation.hh
simple_moves / sidechain_moves / SidechainMoverBase.ccid / DOF_ID_Range.hh
simple_moves / sidechain_moves / SidechainMoverBase.ccpack / dunbrack / DunbrackRotamer.hh
simple_moves / sidechain_moves / SidechainMoverBase.ccpack / task / PackerTask.hh
simple_moves / sidechain_moves / SidechainMoverBase.ccpose / Pose.hh
simple_moves / sidechain_moves / SidechainMoverBase.ccconformation / Residue.hh
simple_moves / sidechain_moves / SidechainMoverBase.ccconformation / ResidueFactory.hh
simple_moves / sidechain_moves / SidechainMoverBase.ccchemical / ResidueType.hh
simple_moves / sidechain_moves / SidechainMoverBase.ccpack / dunbrack / RotamerLibraryScratchSpace.hh
simple_moves / sidechain_moves / SidechainMoverBase.ccscoring / ScoringManager.hh
simple_moves / sidechain_moves / SidechainMoverBase.ccpack / dunbrack / SingleResidueDunbrackLibrary.hh
simple_moves / sidechain_moves / SidechainMoverBase.ccpack / task / TaskFactory.hh
simple_moves / sidechain_moves / SidechainMoverBase.ccpack / task / operation / TaskOperations.hh
simple_moves / sidechain_moves / SidechainMoverBase.ccid / TorsionID.hh
simple_moves / sidechain_moves / SidechainMoverBase.cctypes.hh
simple_moves / sidechain_moves / SidechainMoverBase.hhid / DOF_ID_Range.fwd.hh
simple_moves / sidechain_moves / SidechainMoverBase.hhpack / dunbrack / DunbrackRotamer.fwd.hh
simple_moves / sidechain_moves / SidechainMoverBase.hhpack / dunbrack / DunbrackRotamer.hh
simple_moves / sidechain_moves / SidechainMoverBase.hhpack / task / PackerTask.fwd.hh
simple_moves / sidechain_moves / SidechainMoverBase.hhpose / Pose.fwd.hh
simple_moves / sidechain_moves / SidechainMoverBase.hhchemical / ResidueType.fwd.hh
simple_moves / sidechain_moves / SidechainMoverBase.hhpack / dunbrack / RotamerLibrary.fwd.hh
simple_moves / sidechain_moves / SidechainMoverBase.hhpack / task / TaskFactory.fwd.hh
simple_filters / SidechainRmsdFilter.ccchemical / AA.hh
simple_filters / SidechainRmsdFilter.ccconformation / Conformation.hh
simple_filters / SidechainRmsdFilter.ccimport_pose / import_pose.hh
simple_filters / SidechainRmsdFilter.ccpose / Pose.hh
simple_filters / SidechainRmsdFilter.ccconformation / Residue.hh
simple_filters / SidechainRmsdFilter.ccconformation / ResidueFactory.hh
simple_filters / SidechainRmsdFilter.ccchemical / ResidueType.hh
simple_filters / SidechainRmsdFilter.ccchemical / ResidueTypeSet.hh
simple_filters / SidechainRmsdFilter.ccscoring / rms_util.hh
simple_filters / SidechainRmsdFilter.ccpose / selection.hh
simple_filters / SidechainRmsdFilter.ccconformation / util.hh
simple_filters / SidechainRmsdFilter.hhpose / Pose.fwd.hh
simple_filters / SidechainRmsdFilter.hhtypes.hh
simple_filters / SigmoidFilter.ccpose / Pose.hh
simple_filters / SigmoidFilter.hhpose / Pose.fwd.hh
simple_filters / SigmoidFilter.hhtypes.hh
inputter / SilentFileInputter.ccchemical / ChemicalManager.hh
inputter / SilentFileInputter.ccpose / Pose.hh
inputter / SilentFileInputter.ccpose / util.hh
inputter / SilentFileInputter.hhpose / Pose.fwd.hh
inputter / SilentFileInputter.hhio / silent / SilentFileData.hh
jd2 / SilentFileJobInputter.ccpose / Pose.hh
jd2 / SilentFileJobInputter.ccpose / symmetry / util.hh
jd2 / SilentFileJobInputter.ccpose / util.hh
jd2 / SilentFileJobInputter.hhpose / Pose.fwd.hh
jd2 / SilentFileJobInputter.hhio / silent / SilentFileData.hh
jd2 / SilentFileJobInputter.hhio / silent / SilentStruct.fwd.hh
jd2 / SilentFileJobOutputter.ccpose / Pose.hh
jd2 / SilentFileJobOutputter.ccio / silent / SilentFileData.hh
jd2 / SilentFileJobOutputter.ccio / silent / SilentStructFactory.hh
jd2 / SilentFileJobOutputter.hhpose / Pose.fwd.hh
jd2 / SilentFileJobOutputter.hhtypes.hh
outputter / SilentFileOutputter.ccio / silent / BinaryProteinSilentStruct.hh
outputter / SilentFileOutputter.ccio / silent / ProteinSilentStruct.hh
outputter / SilentFileOutputter.hhio / silent / SilentFileData.hh
viewer / SilentObserver.ccpose / signals / EnergyEvent.hh
viewer / SilentObserver.ccpose / Pose.hh
viewer / SilentObserver.ccio / silent / SilentFileData.hh
viewer / SilentObserver.ccio / silent / SilentStruct.fwd.hh
viewer / SilentObserver.ccio / silent / SilentStructFactory.hh
viewer / SilentObserver.ccid / types.hh
viewer / SilentObserver.cctypes.hh
viewer / SilentObserver.hhpose / signals / EnergyEvent.fwd.hh
viewer / SilentObserver.hhpose / Pose.fwd.hh
viewer / SilentObserver.hhio / silent / SilentFileData.fwd.hh
wum / SilentStructStore.ccio / silent / BinaryProteinSilentStruct.hh
wum / SilentStructStore.ccchemical / ChemicalManager.hh
wum / SilentStructStore.cckinematics / FoldTree.hh
wum / SilentStructStore.cckinematics / Jump.hh
wum / SilentStructStore.ccimport_pose / pose_stream / MetaPoseInputStream.hh
wum / SilentStructStore.ccpose / Pose.hh
wum / SilentStructStore.ccio / silent / ProteinSilentStruct.hh
wum / SilentStructStore.ccio / silent / ProteinSilentStruct.tmpl.hh
wum / SilentStructStore.ccconformation / Residue.hh
wum / SilentStructStore.ccchemical / ResidueTypeSet.hh
wum / SilentStructStore.cckinematics / RT.hh
wum / SilentStructStore.ccio / silent / SilentFileData.hh
wum / SilentStructStore.ccio / silent / SilentStruct.fwd.hh
wum / SilentStructStore.ccio / silent / SilentStruct.hh
wum / SilentStructStore.ccio / silent / SilentStructFactory.hh
wum / SilentStructStore.ccimport_pose / pose_stream / util.hh
wum / SilentStructStore.ccpose / util.hh
wum / SilentStructStore.hhpose / Pose.fwd.hh
wum / SilentStructStore.hhio / silent / SilentStruct.hh
wum / SilentStructStore.hhtypes.hh
canonical_sampling / SilentTrajectoryRecorder.ccscoring / constraints / ConstraintSet.hh
canonical_sampling / SilentTrajectoryRecorder.ccscoring / Energies.hh
canonical_sampling / SilentTrajectoryRecorder.ccpose / Pose.hh
canonical_sampling / SilentTrajectoryRecorder.ccio / raw_data / ScoreStruct.hh
canonical_sampling / SilentTrajectoryRecorder.ccio / silent / SilentFileData.hh
canonical_sampling / SilentTrajectoryRecorder.cctypes.hh
canonical_sampling / SilentTrajectoryRecorder.hhpose / Pose.fwd.hh
canonical_sampling / SilentTrajectoryRecorder.hhtypes.hh
nonlocal / SimpleTreeBuilder.cckinematics / FoldTree.hh
nonlocal / SimpleTreeBuilder.ccpose / Pose.hh
nonlocal / SimpleTreeBuilder.hhpose / Pose.fwd.hh
canonical_sampling / SimulatedTempering.ccscoring / ScoreFunction.hh
canonical_sampling / SimulatedTempering.ccpack / task / TaskFactory.hh
canonical_sampling / SimulatedTempering.ccpack / task / operation / TaskOperations.hh
canonical_sampling / SimulatedTempering.cctypes.hh
canonical_sampling / SimulatedTempering.hhpose / Pose.fwd.hh
canonical_sampling / SimulatedTempering.hhtypes.hh
jd2 / SingleFileBuffer.hhtypes.hh
nonlocal / SingleFragmentMover.cckinematics / FoldTree.hh
nonlocal / SingleFragmentMover.ccfragment / FragmentIO.hh
nonlocal / SingleFragmentMover.ccfragment / FragSet.hh
nonlocal / SingleFragmentMover.ccfragment / Frame.hh
nonlocal / SingleFragmentMover.ccfragment / FrameIterator.hh
nonlocal / SingleFragmentMover.cckinematics / MoveMap.hh
nonlocal / SingleFragmentMover.ccpose / Pose.hh
nonlocal / SingleFragmentMover.ccutil / SwitchResidueTypeSet.hh
nonlocal / SingleFragmentMover.cctypes.hh
nonlocal / SingleFragmentMover.hhkinematics / FoldTree.hh
nonlocal / SingleFragmentMover.hhfragment / FragData.hh
nonlocal / SingleFragmentMover.hhfragment / FragSet.fwd.hh
nonlocal / SingleFragmentMover.hhfragment / Frame.hh
nonlocal / SingleFragmentMover.hhkinematics / MoveMap.fwd.hh
nonlocal / SingleFragmentMover.hhpose / Pose.fwd.hh
nonlocal / SingleFragmentMover.hhtypes.hh
qsar / scoring_grid / SingleGrid.ccgrid / CartGrid.hh
qsar / scoring_grid / SingleGrid.ccconformation / Conformation.hh
qsar / scoring_grid / SingleGrid.ccconformation / Residue.hh
qsar / scoring_grid / SingleGrid.ccpose / util.hh
qsar / scoring_grid / SingleGrid.hhgrid / CartGrid.hh
qsar / scoring_grid / SingleGrid.hhpose / Pose.fwd.hh
qsar / scoring_grid / SingleGrid.hhconformation / Residue.fwd.hh
motifs / SingleMotif.ccconformation / Atom.hh
motifs / SingleMotif.cckinematics / Jump.hh
motifs / SingleMotif.ccconformation / Residue.hh
motifs / SingleMotif.ccchemical / ResidueType.hh
multistate_design / SingleState.ccpose / Pose.hh
multistate_design / SingleState.hhpose / Pose.fwd.hh
multistate_design / SingleState.hhtypes.hh
multistate_design / SingleStateEntityData.hhtypes.hh
multistate_design / SingleStateFitnessFunction.ccscoring / Energies.hh
multistate_design / SingleStateFitnessFunction.ccpose / Pose.hh
multistate_design / SingleStateFitnessFunction.hhpose / Pose.fwd.hh
multistate_design / SingleStateFitnessFunction.hhtypes.hh
surface_docking / SlideIntoSurface.ccpose / datacache / CacheableDataType.hh
surface_docking / SlideIntoSurface.ccscoring / Energies.hh
surface_docking / SlideIntoSurface.ccpose / PDBInfo.hh
surface_docking / SlideIntoSurface.ccpose / Pose.hh
surface_docking / SlideIntoSurface.ccscoring / ScoreFunction.hh
surface_docking / SlideIntoSurface.ccscoring / ScoreFunctionFactory.hh
surface_docking / SlideIntoSurface.hhpose / Pose.fwd.hh
surface_docking / SlideIntoSurface.hhscoring / ScoreFunction.fwd.hh
surface_docking / SlideIntoSurface.hhtypes.hh
ligand_docking / SlideTogether.cctypes.hh
ligand_docking / SlideTogether.ccpose / util.hh
loops / loop_closure / ccd / SlidingWindowLoopClosure.ccfragment / BBTorsionSRFD.hh
loops / loop_closure / ccd / SlidingWindowLoopClosure.ccscoring / Energies.hh
loops / loop_closure / ccd / SlidingWindowLoopClosure.cckinematics / FoldTree.hh
loops / loop_closure / ccd / SlidingWindowLoopClosure.ccfragment / FragCache.hh
loops / loop_closure / ccd / SlidingWindowLoopClosure.ccfragment / FragData.hh
loops / loop_closure / ccd / SlidingWindowLoopClosure.ccfragment / FragSet.hh
loops / loop_closure / ccd / SlidingWindowLoopClosure.ccfragment / Frame.hh
loops / loop_closure / ccd / SlidingWindowLoopClosure.ccfragment / FrameIterator.hh
loops / loop_closure / ccd / SlidingWindowLoopClosure.ccfragment / FrameIteratorWorker_.hh
loops / loop_closure / ccd / SlidingWindowLoopClosure.ccfragment / FrameList.hh
loops / loop_closure / ccd / SlidingWindowLoopClosure.cckinematics / MoveMap.hh
loops / loop_closure / ccd / SlidingWindowLoopClosure.ccpose / Pose.hh
loops / loop_closure / ccd / SlidingWindowLoopClosure.ccscoring / rms_util.hh
loops / loop_closure / ccd / SlidingWindowLoopClosure.ccscoring / ScoreFunction.hh
loops / loop_closure / ccd / SlidingWindowLoopClosure.ccscoring / ScoreFunctionFactory.hh
loops / loop_closure / ccd / SlidingWindowLoopClosure.ccfragment / SecondaryStructure.hh
loops / loop_closure / ccd / SlidingWindowLoopClosure.ccio / silent / SilentFileData.hh
loops / loop_closure / ccd / SlidingWindowLoopClosure.ccio / silent / SilentStruct.hh
loops / loop_closure / ccd / SlidingWindowLoopClosure.ccio / silent / SilentStructFactory.hh
loops / loop_closure / ccd / SlidingWindowLoopClosure.ccpose / util.hh
loops / loop_closure / ccd / SlidingWindowLoopClosure.hhfragment / FragID.hh
loops / loop_closure / ccd / SlidingWindowLoopClosure.hhfragment / FragSet.fwd.hh
loops / loop_closure / ccd / SlidingWindowLoopClosure.hhkinematics / MoveMap.fwd.hh
loops / loop_closure / ccd / SlidingWindowLoopClosure.hhfragment / OrderedFragSet.hh
loops / loop_closure / ccd / SlidingWindowLoopClosure.hhpose / Pose.fwd.hh
loops / loop_closure / ccd / SlidingWindowLoopClosure.hhscoring / ScoreFunction.hh
loops / loop_closure / ccd / SlidingWindowLoopClosure.hhfragment / SecondaryStructure.hh
loops / loop_closure / ccd / SlidingWindowLoopClosure.hhtypes.hh
topology_broker / weights / SmallFragWeight.hhtypes.hh
loops / loop_mover / refine / SmallMinCCDTrial.ccoptimization / AtomTreeMinimizer.hh
loops / loop_mover / refine / SmallMinCCDTrial.ccscoring / Energies.hh
loops / loop_mover / refine / SmallMinCCDTrial.ccoptimization / MinimizerOptions.hh
loops / loop_mover / refine / SmallMinCCDTrial.cckinematics / MoveMap.hh
loops / loop_mover / refine / SmallMinCCDTrial.ccpack / task / PackerTask.hh
loops / loop_mover / refine / SmallMinCCDTrial.ccpose / Pose.hh
loops / loop_mover / refine / SmallMinCCDTrial.ccpack / rotamer_trials.hh
loops / loop_mover / refine / SmallMinCCDTrial.ccscoring / ScoreFunction.hh
loops / loop_mover / refine / SmallMinCCDTrial.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
loops / loop_mover / refine / SmallMinCCDTrial.ccpack / task / TaskFactory.hh
loops / loop_mover / refine / SmallMinCCDTrial.ccpose / symmetry / util.hh
loops / loop_mover / refine / SmallMinCCDTrial.hhoptimization / AtomTreeMinimizer.fwd.hh
loops / loop_mover / refine / SmallMinCCDTrial.hhoptimization / MinimizerOptions.fwd.hh
loops / loop_mover / refine / SmallMinCCDTrial.hhpack / task / PackerTask.fwd.hh
simple_moves / SmoothFragmentMover.ccfragment / FragSet.hh
simple_moves / SmoothFragmentMover.ccfragment / Frame.hh
simple_moves / SmoothFragmentMover.ccfragment / FrameList.hh
simple_moves / SmoothFragmentMover.cckinematics / MoveMap.hh
simple_moves / SmoothFragmentMover.cctypes.hh
simple_moves / SmoothFragmentMover.hhpose / Pose.fwd.hh
simple_moves / SmoothFragmentMover.hhtypes.hh
topology_broker / weights / SmoothFragWeight.hhtypes.hh
nonlocal / SmoothPolicy.ccfragment / FragSet.hh
nonlocal / SmoothPolicy.ccfragment / Frame.hh
nonlocal / SmoothPolicy.cctypes.hh
nonlocal / SmoothPolicy.hhfragment / FragSet.fwd.hh
nonlocal / SmoothPolicy.hhfragment / Frame.fwd.hh
nonlocal / SmoothPolicy.hhpose / Pose.fwd.hh
nonlocal / SmoothPolicy.hhtypes.hh
features / SmotifFeatures.ccscoring / dssp / Dssp.hh
features / SmotifFeatures.ccpose / Pose.hh
features / SmotifFeatures.ccconformation / Residue.hh
features / SmotifFeatures.cctypes.hh
features / SmotifFeatures.hhpose / Pose.fwd.hh
features / SmotifFeatures.hhscoring / ScoreFunction.fwd.hh
features / SmotifFeaturesCreator.hhtypes.hh
antibody2 / SnugDock.ccchemical / ChemicalManager.fwd.hh
antibody2 / SnugDock.ccpose / Pose.hh
antibody2 / SnugDock.ccscoring / ScoreFunctionFactory.hh
antibody2 / SnugDock.cctypes.hh
antibody2 / SnugDock.hhscoring / ScoreFunction.fwd.hh
antibody2 / SnugDockProtocol.ccpose / Pose.hh
antibody2 / SnugDockProtocol.ccscoring / ScoreFunctionFactory.hh
qsar / scoring_grid / SolvationGrid.ccchemical / AtomTypeSet.hh
qsar / scoring_grid / SolvationGrid.ccchemical / ChemicalManager.hh
qsar / scoring_grid / SolvationGrid.ccscoring / etable / EtableEnergy.hh
qsar / scoring_grid / SolvationGrid.ccpose / Pose.hh
qsar / scoring_grid / SolvationGrid.ccconformation / Residue.hh
qsar / scoring_grid / SolvationGrid.ccscoring / ScoringManager.hh
qsar / scoring_grid / SolvationMetaGrid.ccchemical / AtomTypeSet.hh
qsar / scoring_grid / SolvationMetaGrid.ccchemical / ChemicalManager.hh
qsar / scoring_grid / SolvationMetaGrid.ccconformation / Residue.hh
frag_picker / scores / SolventAccessibility.cctypes.hh
frag_picker / scores / SolventAccessibility.hhtypes.hh
sparta / Sparta.ccpose / Pose.hh
sparta / Sparta.cctypes.hh
sparta / Sparta.hhpose / Pose.fwd.hh
sparta / Sparta.hhtypes.hh
sparta / SpartaUtil.cctypes.hh
sparta / SpartaUtil.hhtypes.hh
scoring / methods / SpecialRotamerEnergy.ccscoring / methods / ContextIndependentOneBodyEnergy.hh
scoring / methods / SpecialRotamerEnergy.ccscoring / EnergyMap.hh
scoring / methods / SpecialRotamerEnergy.ccconformation / Residue.hh
scoring / methods / SpecialRotamerEnergy.hhscoring / methods / ContextIndependentOneBodyEnergy.hh
scoring / methods / SpecialRotamerEnergy.hhid / DOF_ID.fwd.hh
scoring / methods / SpecialRotamerEnergy.hhpose / Pose.fwd.hh
scoring / methods / SpecialRotamerEnergy.hhscoring / ScoreFunction.fwd.hh
scoring / methods / SpecialRotamerEnergy.hhid / TorsionID.fwd.hh
scoring / methods / SpecialRotamerEnergyCreator.hhscoring / methods / EnergyMethodCreator.hh
toolbox / rotamer_set_operations / SpecialRotamerRotSetOps.ccconformation / Residue.hh
toolbox / rotamer_set_operations / SpecialRotamerRotSetOps.ccpack / rotamer_set / RotamerSet.hh
toolbox / rotamer_set_operations / SpecialRotamerRotSetOps.ccpose / util.hh
toolbox / rotamer_set_operations / SpecialRotamerRotSetOps.ccchemical / VariantType.hh
toolbox / rotamer_set_operations / SpecialRotamerRotSetOps.hhgraph / Graph.fwd.hh
toolbox / rotamer_set_operations / SpecialRotamerRotSetOps.hhpack / task / PackerTask.fwd.hh
toolbox / rotamer_set_operations / SpecialRotamerRotSetOps.hhpose / Pose.fwd.hh
toolbox / rotamer_set_operations / SpecialRotamerRotSetOps.hhconformation / Residue.fwd.hh
toolbox / rotamer_set_operations / SpecialRotamerRotSetOps.hhpack / rotamer_set / RotamerSet.fwd.hh
toolbox / rotamer_set_operations / SpecialRotamerRotSetOps.hhpack / rotamer_set / RotamerSetOperation.hh
toolbox / rotamer_set_operations / SpecialRotamerRotSetOps.hhscoring / ScoreFunction.fwd.hh
protein_interface_design / filters / SpecificResiduesNearInterfaceFilter.ccconformation / Conformation.hh
protein_interface_design / filters / SpecificResiduesNearInterfaceFilter.ccpack / task / PackerTask.hh
protein_interface_design / filters / SpecificResiduesNearInterfaceFilter.ccpose / Pose.hh
protein_interface_design / filters / SpecificResiduesNearInterfaceFilter.ccpack / task / TaskFactory.hh
protein_interface_design / filters / SpecificResiduesNearInterfaceFilter.hhpose / Pose.fwd.hh
protein_interface_design / filters / SpecificResiduesNearInterfaceFilter.hhpack / task / TaskFactory.fwd.hh
protein_interface_design / movers / SpinMover.ccconformation / Conformation.fwd.hh
protein_interface_design / movers / SpinMover.ccconformation / Conformation.hh
protein_interface_design / movers / SpinMover.cckinematics / FoldTree.hh
protein_interface_design / movers / SpinMover.cckinematics / Jump.hh
protein_interface_design / movers / SpinMover.ccpose / Pose.hh
protein_interface_design / movers / SpinMover.ccconformation / Residue.hh
protein_interface_design / movers / SpinMover.cckinematics / Stub.hh
protein_interface_design / movers / SpinMover.hhpose / Pose.fwd.hh
protein_interface_design / movers / SpinMover.hhtypes.hh
protein_interface_design / movers / Splice.ccchemical / AA.hh
protein_interface_design / movers / Splice.ccconformation / Conformation.hh
protein_interface_design / movers / Splice.ccscoring / constraints / ConstraintSet.hh
protein_interface_design / movers / Splice.ccscoring / dssp / Dssp.hh
protein_interface_design / movers / Splice.cckinematics / FoldTree.hh
protein_interface_design / movers / Splice.ccimport_pose / import_pose.hh
protein_interface_design / movers / Splice.cckinematics / MoveMap.hh
protein_interface_design / movers / Splice.ccpack / task / operation / NoRepackDisulfides.hh
protein_interface_design / movers / Splice.ccpose / Pose.hh
protein_interface_design / movers / Splice.ccconformation / Residue.hh
protein_interface_design / movers / Splice.ccscoring / ScoreFunction.hh
protein_interface_design / movers / Splice.ccpose / selection.hh
protein_interface_design / movers / Splice.ccsequence / SequenceProfile.hh
protein_interface_design / movers / Splice.ccscoring / constraints / SequenceProfileConstraint.hh
protein_interface_design / movers / Splice.ccpack / task / TaskFactory.hh
protein_interface_design / movers / Splice.ccpack / task / operation / TaskOperations.hh
protein_interface_design / movers / Splice.ccconformation / util.hh
protein_interface_design / movers / Splice.ccpose / util.hh
protein_interface_design / movers / Splice.ccchemical / VariantType.hh
protein_interface_design / movers / Splice.hhkinematics / FoldTree.fwd.hh
protein_interface_design / movers / Splice.hhpose / Pose.fwd.hh
protein_interface_design / movers / Splice.hhscoring / ScoreFunction.fwd.hh
protein_interface_design / movers / Splice.hhsequence / SequenceProfile.fwd.hh
protein_interface_design / movers / Splice.hhpack / task / TaskFactory.fwd.hh
protein_interface_design / movers / Splice.hhtypes.hh
protein_interface_design / movers / SpliceSegment.ccsequence / SequenceProfile.hh
protein_interface_design / movers / SpliceSegment.hhsequence / SequenceProfile.fwd.hh
fldsgn / topology / SS_Info2.ccpose / Pose.hh
fldsgn / topology / SS_Info2.ccchemical / ResidueType.hh
fldsgn / topology / SS_Info2.hhtypes.hh
comparative_modeling / features / SSFeature.ccpose / Pose.hh
comparative_modeling / features / SSFeature.cctypes.hh
comparative_modeling / features / SSFeature.hhpose / Pose.fwd.hh
comparative_modeling / features / SSFeature.hhtypes.hh
fldsgn / potentials / sspot / SSPairPotential.ccscoring / Energies.hh
fldsgn / potentials / sspot / SSPairPotential.ccscoring / EnergyGraph.hh
fldsgn / potentials / sspot / SSPairPotential.cckinematics / Jump.hh
fldsgn / potentials / sspot / SSPairPotential.ccpose / Pose.hh
fldsgn / potentials / sspot / SSPairPotential.ccconformation / Residue.hh
fldsgn / potentials / sspot / SSPairPotential.hhscoring / EnergyGraph.fwd.hh
fldsgn / potentials / sspot / SSPairPotential.hhpose / Pose.fwd.hh
fldsgn / potentials / sspot / SSPairPotential.hhtypes.hh
jobdist / standard_mains.ccimport_pose / atom_tree_diffs / atom_tree_diff.hh
jobdist / standard_mains.ccpose / datacache / CacheableDataType.hh
jobdist / standard_mains.ccchemical / ChemicalManager.hh
jobdist / standard_mains.ccimport_pose / import_pose.hh
jobdist / standard_mains.ccscoring / MembraneTopology.hh
jobdist / standard_mains.ccpose / Pose.hh
jobdist / standard_mains.ccio / pdb / pose_io.hh
jobdist / standard_mains.ccio / silent / ProteinSilentStruct.hh
jobdist / standard_mains.ccio / silent / ProteinSilentStruct.tmpl.hh
jobdist / standard_mains.ccscoring / rms_util.hh
jobdist / standard_mains.ccio / silent / ScoreFileSilentStruct.hh
jobdist / standard_mains.ccscoring / ScoreFunction.hh
jobdist / standard_mains.ccio / silent / silent.fwd.hh
jobdist / standard_mains.ccio / silent / SilentFileData.hh
jobdist / standard_mains.ccio / silent / SilentStruct.hh
jobdist / standard_mains.ccio / silent / SilentStructFactory.hh
jobdist / standard_mains.ccutil / SwitchResidueTypeSet.hh
jobdist / standard_mains.cctypes.hh
jobdist / standard_mains.ccscoring / constraints / util.hh
jobdist / standard_mains.ccpose / util.hh
jobdist / standard_mains.hhpose / Pose.fwd.hh
jobdist / standard_mains.hhscoring / ScoreFunction.fwd.hh
jobdist / standard_mains.hhtypes.hh
star / StarAbinitio.ccid / AtomID.hh
star / StarAbinitio.ccscoring / constraints / AtomPairConstraint.hh
star / StarAbinitio.ccconformation / Conformation.hh
star / StarAbinitio.ccscoring / constraints / Constraint.hh
star / StarAbinitio.ccscoring / constraints / ConstraintSet.hh
star / StarAbinitio.cckinematics / FoldTree.hh
star / StarAbinitio.ccfragment / FragmentIO.hh
star / StarAbinitio.ccfragment / FragSet.hh
star / StarAbinitio.ccutil / kinematics_util.hh
star / StarAbinitio.ccoptimization / MinimizerOptions.hh
star / StarAbinitio.cckinematics / MoveMap.hh
star / StarAbinitio.ccpose / Pose.hh
star / StarAbinitio.ccconformation / Residue.hh
star / StarAbinitio.ccscoring / ScoreFunction.hh
star / StarAbinitio.ccscoring / ScoreFunctionFactory.hh
star / StarAbinitio.ccfragment / SecondaryStructure.hh
star / StarAbinitio.ccsequence / SequenceAlignment.hh
star / StarAbinitio.cckinematics / ShortestPathInFoldTree.hh
star / StarAbinitio.cctypes.hh
star / StarAbinitio.ccscoring / constraints / util.hh
star / StarAbinitio.ccpose / util.hh
star / StarAbinitio.ccconformation / util.hh
star / StarAbinitio.hhfragment / FragSet.fwd.hh
star / StarAbinitio.hhpose / Pose.fwd.hh
star / StarAbinitio.hhfragment / SecondaryStructure.fwd.hh
ligand_docking / StartFrom.ccchemical / AtomType.hh
ligand_docking / StartFrom.cctypes.hh
ligand_docking / StartFrom.ccpose / util.hh
ligand_docking / StartFrom.hhpose / Pose.fwd.hh
ligand_docking / StartFrom.hhtypes.hh
nonlocal / StarTreeBuilder.ccconformation / Conformation.hh
nonlocal / StarTreeBuilder.cckinematics / FoldTree.hh
nonlocal / StarTreeBuilder.ccimport_pose / import_pose.hh
nonlocal / StarTreeBuilder.ccpose / Pose.hh
nonlocal / StarTreeBuilder.ccscoring / rms_util.hh
nonlocal / StarTreeBuilder.cctypes.hh
nonlocal / StarTreeBuilder.ccpose / util.hh
nonlocal / StarTreeBuilder.hhpose / Pose.fwd.hh
nonlocal / StarTreeBuilder.hhtypes.hh
topology_broker / StartStructClaimer.ccfragment / BBTorsionSRFD.hh
topology_broker / StartStructClaimer.ccchemical / ChemicalManager.hh
topology_broker / StartStructClaimer.ccfragment / ConstantLengthFragSet.hh
topology_broker / StartStructClaimer.ccfragment / FragData.hh
topology_broker / StartStructClaimer.ccfragment / FragSet.hh
topology_broker / StartStructClaimer.ccimport_pose / import_pose.hh
topology_broker / StartStructClaimer.ccpose / Pose.hh
topology_broker / StartStructClaimer.ccfragment / util.hh
topology_broker / StartStructClaimer.hhkinematics / MoveMap.hh
topology_broker / StartStructClaimer.hhpose / Pose.hh
comparative_modeling / StealLigandMover.ccid / NamedAtomID.hh
comparative_modeling / StealLigandMover.cctypes.hh
comparative_modeling / StealLigandMover.hhid / NamedAtomID.hh
comparative_modeling / StealLigandMover.hhpose / Pose.fwd.hh
comparative_modeling / StealLigandMover.hhtypes.hh
comparative_modeling / StealSideChainsMover.ccpose / Pose.hh
comparative_modeling / StealSideChainsMover.ccconformation / Residue.hh
comparative_modeling / StealSideChainsMover.ccid / SequenceMapping.hh
comparative_modeling / StealSideChainsMover.cctypes.hh
comparative_modeling / StealSideChainsMover.hhpose / Pose.fwd.hh
comparative_modeling / StealSideChainsMover.hhid / SequenceMapping.hh
swa / protein / StepWiseBetaAntiParallelJumpSampleGenerator.cckinematics / FoldTree.hh
swa / protein / StepWiseBetaAntiParallelJumpSampleGenerator.cckinematics / Jump.hh
swa / protein / StepWiseBetaAntiParallelJumpSampleGenerator.ccpose / Pose.hh
swa / protein / StepWiseBetaAntiParallelJumpSampleGenerator.cctypes.hh
swa / protein / StepWiseBetaAntiParallelJumpSampleGenerator.hhkinematics / Jump.hh
swa / protein / StepWiseBetaAntiParallelJumpSampleGenerator.hhpose / Pose.fwd.hh
swa / protein / StepWiseBetaAntiParallelJumpSampleGenerator.hhtypes.hh
swa / protein / StepWiseBetaAntiParallelUtil.ccpose / annotated_sequence.hh
swa / protein / StepWiseBetaAntiParallelUtil.ccio / silent / BinaryProteinSilentStruct.hh
swa / protein / StepWiseBetaAntiParallelUtil.ccchemical / ChemicalManager.hh
swa / protein / StepWiseBetaAntiParallelUtil.ccscoring / hbonds / HBondOptions.hh
swa / protein / StepWiseBetaAntiParallelUtil.ccscoring / hbonds / hbonds.hh
swa / protein / StepWiseBetaAntiParallelUtil.ccscoring / hbonds / HBondSet.hh
swa / protein / StepWiseBetaAntiParallelUtil.ccimport_pose / import_pose.hh
swa / protein / StepWiseBetaAntiParallelUtil.ccid / NamedAtomID.hh
swa / protein / StepWiseBetaAntiParallelUtil.ccpose / Pose.hh
swa / protein / StepWiseBetaAntiParallelUtil.ccscoring / ScoreFunction.hh
swa / protein / StepWiseBetaAntiParallelUtil.ccscoring / ScoreFunctionFactory.hh
swa / protein / StepWiseBetaAntiParallelUtil.ccio / silent / SilentFileData.hh
swa / protein / StepWiseBetaAntiParallelUtil.ccpose / util.hh
swa / protein / StepWiseBetaAntiParallelUtil.ccchemical / VariantType.hh
swa / protein / StepWiseBetaAntiParallelUtil.hhpose / Pose.fwd.hh
swa / protein / StepWiseBetaAntiParallelUtil.hhkinematics / Stub.fwd.hh
swa / protein / StepWiseBetaAntiParallelUtil.hhtypes.hh
swa / StepWiseClusterer.ccid / AtomID.hh
swa / StepWiseClusterer.ccchemical / ChemicalManager.hh
swa / StepWiseClusterer.ccpose / Pose.hh
swa / StepWiseClusterer.ccimport_pose / pose_stream / PoseInputStream.fwd.hh
swa / StepWiseClusterer.ccimport_pose / pose_stream / PoseInputStream.hh
swa / StepWiseClusterer.ccchemical / ResidueTypeSet.hh
swa / StepWiseClusterer.ccscoring / rms_util.hh
swa / StepWiseClusterer.ccio / silent / SilentFileData.hh
swa / StepWiseClusterer.ccimport_pose / pose_stream / SilentFilePoseInputStream.hh
swa / StepWiseClusterer.ccio / silent / SilentStruct.hh
swa / StepWiseClusterer.cctypes.hh
swa / StepWiseClusterer.ccpose / util.hh
swa / StepWiseClusterer.hhpose / Pose.fwd.hh
swa / StepWiseClusterer.hhchemical / ResidueTypeSet.fwd.hh
swa / StepWiseClusterer.hhscoring / ScoreFunction.fwd.hh
swa / StepWiseClusterer.hhio / silent / SilentFileData.fwd.hh
swa / StepWiseClusterer.hhimport_pose / pose_stream / SilentFilePoseInputStream.fwd.hh
swa / StepWiseClusterer.hhio / silent / SilentStruct.fwd.hh
swa / StepWiseClusterer.hhtypes.hh
swa / StepWiseCombineSampleGenerator.cctypes.hh
swa / StepWiseCombineSampleGenerator.hhpose / Pose.fwd.hh
swa / StepWiseCombineSampleGenerator.hhtypes.hh
swa / StepWiseDoNothingSampleGenerator.cctypes.hh
swa / StepWiseDoNothingSampleGenerator.hhpose / Pose.fwd.hh
swa / StepWiseDoNothingSampleGenerator.hhtypes.hh
swa / StepWiseFilterer.ccscoring / Energies.hh
swa / StepWiseFilterer.ccpose / Pose.hh
swa / StepWiseFilterer.ccscoring / ScoreFunction.hh
swa / StepWiseFilterer.ccscoring / ScoreFunctionFactory.hh
swa / StepWiseFilterer.cctypes.hh
swa / StepWiseFilterer.hhpose / Pose.fwd.hh
swa / StepWiseFilterer.hhtypes.hh
swa / StepWiseIdentitySampleGenerator.cctypes.hh
swa / StepWiseIdentitySampleGenerator.hhpose / Pose.fwd.hh
swa / StepWiseIdentitySampleGenerator.hhtypes.hh
swa / StepWiseJobParameters.ccpose / Pose.hh
swa / StepWiseJobParameters.hhpose / Pose.fwd.hh
swa / StepWiseJobParameters.hhtypes.hh
swa / StepWisePoseCombineSampleGenerator.cctypes.hh
swa / StepWisePoseCombineSampleGenerator.hhpose / Pose.fwd.hh
swa / StepWisePoseCombineSampleGenerator.hhtypes.hh
swa / StepWisePoseSampleGenerator.hhpose / Pose.fwd.hh
swa / StepWisePoseSetup.ccpose / annotated_sequence.hh
swa / StepWisePoseSetup.ccscoring / constraints / AtomPairConstraint.hh
swa / StepWisePoseSetup.ccchemical / ChemicalManager.hh
swa / StepWisePoseSetup.ccconformation / Conformation.hh
swa / StepWisePoseSetup.ccscoring / constraints / ConstraintIO.hh
swa / StepWisePoseSetup.ccscoring / constraints / ConstraintSet.hh
swa / StepWisePoseSetup.ccio / raw_data / DisulfideFile.hh
swa / StepWisePoseSetup.ccscoring / constraints / FadeFunc.hh
swa / StepWisePoseSetup.cckinematics / FoldTree.hh
swa / StepWisePoseSetup.ccscoring / constraints / Func.fwd.hh
swa / StepWisePoseSetup.ccimport_pose / import_pose.hh
swa / StepWisePoseSetup.ccpose / Pose.hh
swa / StepWisePoseSetup.ccconformation / Residue.hh
swa / StepWisePoseSetup.ccscoring / rms_util.hh
swa / StepWisePoseSetup.ccscoring / rna / RNA_Util.hh
swa / StepWisePoseSetup.ccscoring / ScoreFunction.hh
swa / StepWisePoseSetup.ccscoring / ScoreType.hh
swa / StepWisePoseSetup.ccid / TorsionID.hh
swa / StepWisePoseSetup.cctypes.hh
swa / StepWisePoseSetup.ccpose / util.hh
swa / StepWisePoseSetup.ccchemical / VariantType.hh
swa / StepWisePoseSetup.hhid / AtomID.fwd.hh
swa / StepWisePoseSetup.hhid / AtomID_Map.hh
swa / StepWisePoseSetup.hhscoring / constraints / ConstraintSet.fwd.hh
swa / StepWisePoseSetup.hhpose / Pose.fwd.hh
swa / StepWisePoseSetup.hhconformation / Residue.fwd.hh
swa / StepWisePoseSetup.hhchemical / ResidueTypeSet.fwd.hh
swa / StepWisePoseSetup.hhtypes.hh
swa / protein / StepWiseProteinCCD_Closer.ccid / AtomID.hh
swa / protein / StepWiseProteinCCD_Closer.cckinematics / Jump.hh
swa / protein / StepWiseProteinCCD_Closer.ccpose / Pose.hh
swa / protein / StepWiseProteinCCD_Closer.ccchemical / ResidueType.hh
swa / protein / StepWiseProteinCCD_Closer.ccid / TorsionID.hh
swa / protein / StepWiseProteinCCD_Closer.cctypes.hh
swa / protein / StepWiseProteinCCD_Closer.ccchemical / VariantType.hh
swa / protein / StepWiseProteinCCD_Closer.hhkinematics / MoveMap.hh
swa / protein / StepWiseProteinCCD_Closer.hhpose / Pose.fwd.hh
swa / protein / StepWiseProteinCCD_Closer.hhid / TorsionID.hh
swa / protein / StepWiseProteinFilterer.ccscoring / Energies.hh
swa / protein / StepWiseProteinFilterer.ccpose / Pose.hh
swa / protein / StepWiseProteinFilterer.ccscoring / ScoreFunction.hh
swa / protein / StepWiseProteinFilterer.ccscoring / ScoreFunctionFactory.hh
swa / protein / StepWiseProteinFilterer.cctypes.hh
swa / protein / StepWiseProteinFilterer.hhpose / Pose.fwd.hh
swa / protein / StepWiseProteinFilterer.hhtypes.hh
swa / protein / StepWiseProteinFragmentSampleGenerator.ccfragment / ConstantLengthFragSet.hh
swa / protein / StepWiseProteinFragmentSampleGenerator.ccfragment / FragSet.hh
swa / protein / StepWiseProteinFragmentSampleGenerator.ccfragment / Frame.hh
swa / protein / StepWiseProteinFragmentSampleGenerator.ccfragment / FrameList.hh
swa / protein / StepWiseProteinFragmentSampleGenerator.cctypes.hh
swa / protein / StepWiseProteinFragmentSampleGenerator.hhfragment / Frame.fwd.hh
swa / protein / StepWiseProteinFragmentSampleGenerator.hhpose / Pose.fwd.hh
swa / protein / StepWiseProteinFragmentSampleGenerator.hhtypes.hh
swa / protein / StepWiseProteinJumpSampleGenerator.cckinematics / Jump.hh
swa / protein / StepWiseProteinJumpSampleGenerator.ccpose / Pose.hh
swa / protein / StepWiseProteinJumpSampleGenerator.cctypes.hh
swa / protein / StepWiseProteinJumpSampleGenerator.hhkinematics / Jump.hh
swa / protein / StepWiseProteinJumpSampleGenerator.hhpose / Pose.fwd.hh
swa / protein / StepWiseProteinJumpSampleGenerator.hhtypes.hh
swa / protein / StepWiseProteinLoopBridger.cckinematics / FoldTree.hh
swa / protein / StepWiseProteinLoopBridger.cckinematics / Jump.hh
swa / protein / StepWiseProteinLoopBridger.ccpose / Pose.hh
swa / protein / StepWiseProteinLoopBridger.ccscoring / Ramachandran.hh
swa / protein / StepWiseProteinLoopBridger.ccconformation / Residue.hh
swa / protein / StepWiseProteinLoopBridger.ccchemical / ResidueConnection.hh
swa / protein / StepWiseProteinLoopBridger.ccio / silent / SilentFileData.fwd.hh
swa / protein / StepWiseProteinLoopBridger.ccid / TorsionID.hh
swa / protein / StepWiseProteinLoopBridger.cctypes.hh
swa / protein / StepWiseProteinLoopBridger.ccchemical / VariantType.hh
swa / protein / StepWiseProteinLoopBridger.hhpose / Pose.fwd.hh
swa / protein / StepWiseProteinLoopBridger.hhscoring / Ramachandran.hh
swa / protein / StepWiseProteinLoopBridger.hhid / TorsionID.fwd.hh
swa / protein / StepWiseProteinMainChainSampleGenerator.ccpose / Pose.hh
swa / protein / StepWiseProteinMainChainSampleGenerator.ccid / TorsionID.hh
swa / protein / StepWiseProteinMainChainSampleGenerator.cctypes.hh
swa / protein / StepWiseProteinMainChainSampleGenerator.hhpose / Pose.fwd.hh
swa / protein / StepWiseProteinMainChainSampleGenerator.hhid / TorsionID.fwd.hh
swa / protein / StepWiseProteinMainChainSampleGenerator.hhtypes.hh
swa / protein / StepWiseProteinPacker.ccscoring / Energies.hh
swa / protein / StepWiseProteinPacker.ccscoring / EnergyGraph.hh
swa / protein / StepWiseProteinPacker.ccgraph / Graph.hh
swa / protein / StepWiseProteinPacker.cckinematics / Jump.hh
swa / protein / StepWiseProteinPacker.ccpack / pack_rotamers.hh
swa / protein / StepWiseProteinPacker.ccpack / task / PackerTask.hh
swa / protein / StepWiseProteinPacker.ccpose / Pose.hh
swa / protein / StepWiseProteinPacker.ccconformation / Residue.hh
swa / protein / StepWiseProteinPacker.ccpack / rotamer_trials.hh
swa / protein / StepWiseProteinPacker.cckinematics / RT.hh
swa / protein / StepWiseProteinPacker.ccscoring / ScoreFunction.hh
swa / protein / StepWiseProteinPacker.ccscoring / ScoreFunctionFactory.hh
swa / protein / StepWiseProteinPacker.ccio / silent / SilentFileData.fwd.hh
swa / protein / StepWiseProteinPacker.ccio / silent / SilentFileData.hh
swa / protein / StepWiseProteinPacker.ccpack / task / TaskFactory.hh
swa / protein / StepWiseProteinPacker.ccpack / task / operation / TaskOperations.hh
swa / protein / StepWiseProteinPacker.cctypes.hh
swa / protein / StepWiseProteinPacker.hhpack / task / PackerTask.fwd.hh
swa / protein / StepWiseProteinPacker.hhpose / Pose.fwd.hh
swa / protein / StepWiseProteinPacker.hhscoring / ScoreFunction.fwd.hh
swa / protein / StepWiseProteinPacker.hhio / silent / SilentFileData.fwd.hh
swa / protein / StepWiseProteinPacker.hhtypes.hh
swa / protein / StepWiseProteinPoseMinimizer.ccoptimization / AtomTreeMinimizer.hh
swa / protein / StepWiseProteinPoseMinimizer.ccio / silent / BinaryProteinSilentStruct.hh
swa / protein / StepWiseProteinPoseMinimizer.ccconformation / Conformation.hh
swa / protein / StepWiseProteinPoseMinimizer.ccscoring / constraints / ConstraintSet.hh
swa / protein / StepWiseProteinPoseMinimizer.ccscoring / Energies.hh
swa / protein / StepWiseProteinPoseMinimizer.ccscoring / EnergyGraph.hh
swa / protein / StepWiseProteinPoseMinimizer.ccoptimization / MinimizerOptions.hh
swa / protein / StepWiseProteinPoseMinimizer.cckinematics / MoveMap.hh
swa / protein / StepWiseProteinPoseMinimizer.ccpose / Pose.hh
swa / protein / StepWiseProteinPoseMinimizer.ccscoring / ScoreFunction.hh
swa / protein / StepWiseProteinPoseMinimizer.ccscoring / ScoreFunctionFactory.hh
swa / protein / StepWiseProteinPoseMinimizer.ccio / silent / SilentFileData.fwd.hh
swa / protein / StepWiseProteinPoseMinimizer.ccio / silent / SilentFileData.hh
swa / protein / StepWiseProteinPoseMinimizer.ccimport_pose / pose_stream / SilentFilePoseInputStream.hh
swa / protein / StepWiseProteinPoseMinimizer.ccid / TorsionID.hh
swa / protein / StepWiseProteinPoseMinimizer.cctypes.hh
swa / protein / StepWiseProteinPoseMinimizer.ccscoring / constraints / util.hh
swa / protein / StepWiseProteinPoseMinimizer.ccpose / util.hh
swa / protein / StepWiseProteinPoseMinimizer.ccconformation / util.hh
swa / protein / StepWiseProteinPoseMinimizer.hhkinematics / MoveMap.fwd.hh
swa / protein / StepWiseProteinPoseMinimizer.hhpose / Pose.fwd.hh
swa / protein / StepWiseProteinPoseMinimizer.hhscoring / ScoreFunction.fwd.hh
swa / protein / StepWiseProteinPoseMinimizer.hhio / silent / SilentFileData.fwd.hh
swa / protein / StepWiseProteinPoseMinimizer.hhtypes.hh
swa / protein / StepWiseProteinPoseSetup.ccpose / annotated_sequence.hh
swa / protein / StepWiseProteinPoseSetup.ccid / AtomID.hh
swa / protein / StepWiseProteinPoseSetup.ccchemical / ChemicalManager.hh
swa / protein / StepWiseProteinPoseSetup.ccimport_pose / import_pose.hh
swa / protein / StepWiseProteinPoseSetup.ccpose / Pose.hh
swa / protein / StepWiseProteinPoseSetup.ccconformation / Residue.hh
swa / protein / StepWiseProteinPoseSetup.ccchemical / ResidueTypeSet.hh
swa / protein / StepWiseProteinPoseSetup.ccio / silent / SilentFileData.hh
swa / protein / StepWiseProteinPoseSetup.cctypes.hh
swa / protein / StepWiseProteinPoseSetup.ccpose / util.hh
swa / protein / StepWiseProteinPoseSetup.hhpose / Pose.fwd.hh
swa / protein / StepWiseProteinPoseSetup.hhchemical / ResidueTypeSet.fwd.hh
swa / protein / StepWiseProteinPoseSetup.hhtypes.hh
swa / protein / StepWiseProteinPoseSetup.hhchemical / VariantType.fwd.hh
swa / protein / StepWiseProteinResidueSampler.ccid / AtomID.hh
swa / protein / StepWiseProteinResidueSampler.ccid / DOF_ID.hh
swa / protein / StepWiseProteinResidueSampler.ccscoring / Energies.hh
swa / protein / StepWiseProteinResidueSampler.ccscoring / EnergyGraph.hh
swa / protein / StepWiseProteinResidueSampler.cckinematics / Jump.hh
swa / protein / StepWiseProteinResidueSampler.ccid / NamedAtomID.hh
swa / protein / StepWiseProteinResidueSampler.ccpack / pack_rotamers.hh
swa / protein / StepWiseProteinResidueSampler.ccpack / task / PackerTask.hh
swa / protein / StepWiseProteinResidueSampler.ccpose / Pose.hh
swa / protein / StepWiseProteinResidueSampler.ccpack / rotamer_trials.hh
swa / protein / StepWiseProteinResidueSampler.cckinematics / RT.hh
swa / protein / StepWiseProteinResidueSampler.ccscoring / ScoreFunction.hh
swa / protein / StepWiseProteinResidueSampler.ccscoring / ScoreFunctionFactory.hh
swa / protein / StepWiseProteinResidueSampler.ccio / silent / SilentFileData.fwd.hh
swa / protein / StepWiseProteinResidueSampler.ccio / silent / SilentFileData.hh
swa / protein / StepWiseProteinResidueSampler.ccpack / task / TaskFactory.hh
swa / protein / StepWiseProteinResidueSampler.ccpack / task / operation / TaskOperations.hh
swa / protein / StepWiseProteinResidueSampler.ccid / TorsionID.hh
swa / protein / StepWiseProteinResidueSampler.cctypes.hh
swa / protein / StepWiseProteinResidueSampler.ccpose / util.hh
swa / protein / StepWiseProteinResidueSampler.hhkinematics / Jump.hh
swa / protein / StepWiseProteinResidueSampler.hhpack / task / PackerTask.fwd.hh
swa / protein / StepWiseProteinResidueSampler.hhpose / Pose.fwd.hh
swa / protein / StepWiseProteinResidueSampler.hhscoring / ScoreFunction.fwd.hh
swa / protein / StepWiseProteinResidueSampler.hhio / silent / SilentFileData.fwd.hh
swa / protein / StepWiseProteinResidueSampler.hhid / TorsionID.fwd.hh
swa / protein / StepWiseProteinResidueSampler.hhtypes.hh
swa / protein / StepWiseProteinScreener.ccpose / annotated_sequence.hh
swa / protein / StepWiseProteinScreener.ccid / AtomID.hh
swa / protein / StepWiseProteinScreener.ccchemical / ChemicalManager.hh
swa / protein / StepWiseProteinScreener.ccscoring / dssp / Dssp.hh
swa / protein / StepWiseProteinScreener.ccscoring / Energies.hh
swa / protein / StepWiseProteinScreener.cckinematics / Jump.hh
swa / protein / StepWiseProteinScreener.ccpose / Pose.hh
swa / protein / StepWiseProteinScreener.ccio / silent / ProteinSilentStruct.hh
swa / protein / StepWiseProteinScreener.ccscoring / Ramachandran.hh
swa / protein / StepWiseProteinScreener.ccscoring / rms_util.tmpl.hh
swa / protein / StepWiseProteinScreener.ccscoring / ScoreFunction.hh
swa / protein / StepWiseProteinScreener.ccscoring / ScoreFunctionFactory.hh
swa / protein / StepWiseProteinScreener.ccscoring / ScoreType.hh
swa / protein / StepWiseProteinScreener.ccio / silent / SilentFileData.fwd.hh
swa / protein / StepWiseProteinScreener.ccio / silent / SilentFileData.hh
swa / protein / StepWiseProteinScreener.ccutil / SwitchResidueTypeSet.hh
swa / protein / StepWiseProteinScreener.ccid / TorsionID.hh
swa / protein / StepWiseProteinScreener.cctypes.hh
swa / protein / StepWiseProteinScreener.ccpose / util.hh
swa / protein / StepWiseProteinScreener.hhkinematics / FoldTree.fwd.hh
swa / protein / StepWiseProteinScreener.hhpose / Pose.fwd.hh
swa / protein / StepWiseProteinScreener.hhscoring / Ramachandran.hh
swa / protein / StepWiseProteinScreener.hhscoring / ScoreFunction.fwd.hh
swa / protein / StepWiseProteinScreener.hhid / TorsionID.fwd.hh
swa / protein / StepWiseProteinScreener.hhtypes.hh
swa / protein / StepWiseProteinUtil.ccid / AtomID.hh
swa / protein / StepWiseProteinUtil.ccid / AtomID_Map.hh
swa / protein / StepWiseProteinUtil.ccio / silent / BinaryProteinSilentStruct.hh
swa / protein / StepWiseProteinUtil.ccfragment / ConstantLengthFragSet.hh
swa / protein / StepWiseProteinUtil.ccfragment / FragData.hh
swa / protein / StepWiseProteinUtil.ccfragment / FragSet.hh
swa / protein / StepWiseProteinUtil.ccfragment / Frame.hh
swa / protein / StepWiseProteinUtil.ccfragment / FrameList.hh
swa / protein / StepWiseProteinUtil.ccid / NamedAtomID.hh
swa / protein / StepWiseProteinUtil.ccpose / Pose.hh
swa / protein / StepWiseProteinUtil.ccscoring / rms_util.hh
swa / protein / StepWiseProteinUtil.ccio / silent / SilentFileData.fwd.hh
swa / protein / StepWiseProteinUtil.ccio / silent / SilentFileData.hh
swa / protein / StepWiseProteinUtil.cctypes.hh
swa / protein / StepWiseProteinUtil.ccpose / util.hh
swa / protein / StepWiseProteinUtil.hhid / AtomID.fwd.hh
swa / protein / StepWiseProteinUtil.hhid / AtomID_Map.fwd.hh
swa / protein / StepWiseProteinUtil.hhfragment / ConstantLengthFragSet.fwd.hh
swa / protein / StepWiseProteinUtil.hhpose / Pose.fwd.hh
swa / protein / StepWiseProteinUtil.hhio / silent / SilentFileData.hh
swa / protein / StepWiseProteinUtil.hhtypes.hh
swa / StepWiseResidueSampler.ccpose / Pose.hh
swa / StepWiseResidueSampler.ccscoring / rms_util.tmpl.hh
swa / StepWiseResidueSampler.ccscoring / ScoreFunction.hh
swa / StepWiseResidueSampler.ccscoring / ScoreFunctionFactory.hh
swa / StepWiseResidueSampler.ccio / silent / SilentFileData.fwd.hh
swa / StepWiseResidueSampler.ccio / silent / SilentFileData.hh
swa / StepWiseResidueSampler.ccpack / task / TaskFactory.hh
swa / StepWiseResidueSampler.ccpack / task / operation / TaskOperations.hh
swa / StepWiseResidueSampler.cctypes.hh
swa / StepWiseResidueSampler.hhpose / Pose.fwd.hh
swa / StepWiseResidueSampler.hhscoring / ScoreFunction.fwd.hh
swa / StepWiseResidueSampler.hhio / silent / SilentFileData.fwd.hh
swa / StepWiseResidueSampler.hhtypes.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.ccid / AtomID.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.ccchemical / AtomType.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.ccio / silent / BinaryRNASilentStruct.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.ccchemical / ChemicalManager.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.ccid / DOF_ID.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.ccscoring / Energies.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.ccscoring / EnergyGraph.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.ccscoring / EnergyMap.fwd.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.ccscoring / EnergyMap.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.ccpack / pack_rotamers.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.ccpack / task / PackerTask.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.ccpose / Pose.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.ccio / pdb / pose_io.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.ccconformation / Residue.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.ccconformation / ResidueFactory.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.ccchemical / ResidueTypeSet.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.ccscoring / rms_util.tmpl.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.ccscoring / rna / RNA_FittedTorsionInfo.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.ccscoring / rna / RNA_Util.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.ccpack / rotamer_trials.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.ccscoring / ScoreFunction.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.ccscoring / ScoreFunctionFactory.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.ccscoring / ScoreType.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.ccio / silent / SilentFileData.fwd.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.ccio / silent / SilentFileData.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.ccpack / task / TaskFactory.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.ccpack / task / operation / TaskOperations.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.ccid / TorsionID.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.cctypes.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.ccchemical / util.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.ccpose / util.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.ccchemical / VariantType.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.hhpack / task / PackerTask.fwd.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.hhpose / Pose.fwd.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.hhconformation / Residue.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.hhscoring / ScoreFunction.fwd.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.hhio / silent / SilentFileData.fwd.hh
swa / rna / StepWiseRNA_AnalyticalLoopCloseSampler.hhtypes.hh
swa / rna / StepWiseRNA_Base_Sugar_Rotamer.ccpose / Pose.hh
swa / rna / StepWiseRNA_Base_Sugar_Rotamer.ccscoring / rna / RNA_FittedTorsionInfo.hh
swa / rna / StepWiseRNA_Base_Sugar_Rotamer.ccscoring / rna / RNA_Util.hh
swa / rna / StepWiseRNA_Base_Sugar_Rotamer.ccid / TorsionID.hh
swa / rna / StepWiseRNA_Base_Sugar_Rotamer.hhpose / Pose.fwd.hh
swa / rna / StepWiseRNA_Base_Sugar_Rotamer.hhscoring / rna / RNA_FittedTorsionInfo.hh
swa / rna / StepWiseRNA_Base_Sugar_Rotamer.hhid / TorsionID.fwd.hh
swa / rna / StepWiseRNA_Base_Sugar_Rotamer.hhtypes.hh
swa / rna / StepWiseRNA_BaseCentroidScreener.cckinematics / FoldTree.hh
swa / rna / StepWiseRNA_BaseCentroidScreener.ccpose / Pose.hh
swa / rna / StepWiseRNA_BaseCentroidScreener.ccconformation / Residue.hh
swa / rna / StepWiseRNA_BaseCentroidScreener.ccscoring / rna / RNA_CentroidInfo.hh
swa / rna / StepWiseRNA_BaseCentroidScreener.cckinematics / Stub.hh
swa / rna / StepWiseRNA_BaseCentroidScreener.ccid / TorsionID.hh
swa / rna / StepWiseRNA_BaseCentroidScreener.hhpose / Pose.fwd.hh
swa / rna / StepWiseRNA_BaseCentroidScreener.hhscoring / rna / RNA_CentroidInfo.fwd.hh
swa / rna / StepWiseRNA_BaseCentroidScreener.hhkinematics / Stub.fwd.hh
swa / rna / StepWiseRNA_BaseCentroidScreener.hhtypes.hh
swa / rna / StepWiseRNA_Classes.hhpose / Pose.fwd.hh
swa / rna / StepWiseRNA_Classes.hhscoring / ScoreFunction.fwd.hh
swa / rna / StepWiseRNA_Classes.hhio / silent / SilentFileData.fwd.hh
swa / rna / StepWiseRNA_Classes.hhid / TorsionID.hh
swa / rna / StepWiseRNA_Classes.hhtypes.hh
swa / rna / StepWiseRNA_Clusterer.ccio / silent / BinaryRNASilentStruct.hh
swa / rna / StepWiseRNA_Clusterer.ccchemical / ChemicalManager.hh
swa / rna / StepWiseRNA_Clusterer.ccscoring / Energies.hh
swa / rna / StepWiseRNA_Clusterer.ccpose / Pose.hh
swa / rna / StepWiseRNA_Clusterer.ccio / pdb / pose_io.hh
swa / rna / StepWiseRNA_Clusterer.ccimport_pose / pose_stream / PoseInputStream.fwd.hh
swa / rna / StepWiseRNA_Clusterer.ccimport_pose / pose_stream / PoseInputStream.hh
swa / rna / StepWiseRNA_Clusterer.ccchemical / ResidueTypeSet.hh
swa / rna / StepWiseRNA_Clusterer.ccscoring / rms_util.hh
swa / rna / StepWiseRNA_Clusterer.ccscoring / rms_util.tmpl.hh
swa / rna / StepWiseRNA_Clusterer.ccscoring / ScoreFunction.hh
swa / rna / StepWiseRNA_Clusterer.ccscoring / ScoreFunctionFactory.hh
swa / rna / StepWiseRNA_Clusterer.ccio / silent / SilentFileData.fwd.hh
swa / rna / StepWiseRNA_Clusterer.ccio / silent / SilentFileData.hh
swa / rna / StepWiseRNA_Clusterer.ccimport_pose / pose_stream / SilentFilePoseInputStream.hh
swa / rna / StepWiseRNA_Clusterer.ccio / silent / SilentStruct.hh
swa / rna / StepWiseRNA_Clusterer.cctypes.hh
swa / rna / StepWiseRNA_Clusterer.ccpose / util.hh
swa / rna / StepWiseRNA_Clusterer.hhpose / Pose.fwd.hh
swa / rna / StepWiseRNA_Clusterer.hhpose / Pose.hh
swa / rna / StepWiseRNA_Clusterer.hhchemical / ResidueTypeSet.hh
swa / rna / StepWiseRNA_Clusterer.hhscoring / ScoreFunction.fwd.hh
swa / rna / StepWiseRNA_Clusterer.hhio / silent / SilentFileData.fwd.hh
swa / rna / StepWiseRNA_Clusterer.hhimport_pose / pose_stream / SilentFilePoseInputStream.fwd.hh
swa / rna / StepWiseRNA_Clusterer.hhio / silent / SilentStruct.fwd.hh
swa / rna / StepWiseRNA_Clusterer.hhtypes.hh
swa / rna / StepWiseRNA_CombineLongLoopFilterer.ccscoring / constraints / AtomPairConstraint.hh
swa / rna / StepWiseRNA_CombineLongLoopFilterer.ccchemical / AtomType.hh
swa / rna / StepWiseRNA_CombineLongLoopFilterer.ccchemical / ChemicalManager.hh
swa / rna / StepWiseRNA_CombineLongLoopFilterer.ccscoring / constraints / ConstraintSet.hh
swa / rna / StepWiseRNA_CombineLongLoopFilterer.ccscoring / constraints / FadeFunc.hh
swa / rna / StepWiseRNA_CombineLongLoopFilterer.cckinematics / FoldTree.hh
swa / rna / StepWiseRNA_CombineLongLoopFilterer.ccscoring / constraints / Func.fwd.hh
swa / rna / StepWiseRNA_CombineLongLoopFilterer.ccimport_pose / import_pose.hh
swa / rna / StepWiseRNA_CombineLongLoopFilterer.ccpose / Pose.hh
swa / rna / StepWiseRNA_CombineLongLoopFilterer.ccimport_pose / pose_stream / PoseInputStream.fwd.hh
swa / rna / StepWiseRNA_CombineLongLoopFilterer.ccimport_pose / pose_stream / PoseInputStream.hh
swa / rna / StepWiseRNA_CombineLongLoopFilterer.ccconformation / Residue.hh
swa / rna / StepWiseRNA_CombineLongLoopFilterer.ccchemical / ResidueTypeSet.hh
swa / rna / StepWiseRNA_CombineLongLoopFilterer.ccscoring / rms_util.tmpl.hh
swa / rna / StepWiseRNA_CombineLongLoopFilterer.ccscoring / rna / RNA_Util.hh
swa / rna / StepWiseRNA_CombineLongLoopFilterer.ccimport_pose / pose_stream / SilentFilePoseInputStream.fwd.hh
swa / rna / StepWiseRNA_CombineLongLoopFilterer.ccimport_pose / pose_stream / SilentFilePoseInputStream.hh
swa / rna / StepWiseRNA_CombineLongLoopFilterer.ccid / TorsionID.hh
swa / rna / StepWiseRNA_CombineLongLoopFilterer.cctypes.hh
swa / rna / StepWiseRNA_CombineLongLoopFilterer.ccpose / util.hh
swa / rna / StepWiseRNA_CombineLongLoopFilterer.ccchemical / util.hh
swa / rna / StepWiseRNA_CombineLongLoopFilterer.ccpose / util.tmpl.hh
swa / rna / StepWiseRNA_CombineLongLoopFilterer.ccchemical / VariantType.hh
swa / rna / StepWiseRNA_CombineLongLoopFilterer.hhpose / Pose.fwd.hh
swa / rna / StepWiseRNA_CombineLongLoopFilterer.hhchemical / ResidueTypeSet.fwd.hh
swa / rna / StepWiseRNA_CombineLongLoopFilterer.hhimport_pose / pose_stream / SilentFilePoseInputStream.fwd.hh
swa / rna / StepWiseRNA_CombineLongLoopFilterer.hhtypes.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccscoring / constraints / AngleConstraint.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccscoring / constraints / AtomPairConstraint.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccoptimization / AtomTreeMinimizer.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccchemical / AtomType.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccio / silent / BinaryRNASilentStruct.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccchemical / ChemicalManager.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccscoring / constraints / ConstraintSet.fwd.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccscoring / constraints / ConstraintSet.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccscoring / Energies.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccscoring / EnergyMap.fwd.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccscoring / EnergyMap.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccoptimization / MinimizerOptions.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccpack / pack_rotamers.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccpack / task / PackerTask.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccpose / Pose.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccio / pdb / pose_io.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccconformation / Residue.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccconformation / ResidueFactory.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccchemical / ResidueTypeSet.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccscoring / rms_util.tmpl.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccscoring / rna / RNA_FittedTorsionInfo.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccscoring / rna / RNA_TorsionPotential.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccscoring / rna / RNA_Util.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccpack / rotamer_trials.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccscoring / ScoreFunction.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccscoring / ScoreFunctionFactory.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccio / silent / SilentFileData.fwd.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccio / silent / SilentFileData.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccpack / task / TaskFactory.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccid / TorsionID.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.cctypes.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccscoring / constraints / util.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccchemical / util.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.ccchemical / VariantType.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.hhchemical / AA.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.hhscoring / constraints / ConstraintSet.fwd.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.hhscoring / constraints / ConstraintSet.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.hhkinematics / FoldTree.fwd.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.hhkinematics / FoldTree.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.hhkinematics / MoveMap.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.hhpose / Pose.fwd.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.hhpose / Pose.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.hhconformation / Residue.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.hhio / silent / RNA_SilentStruct.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.hhscoring / rna / RNA_Util.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.hhscoring / ScoreFunction.fwd.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.hhio / silent / SilentFileData.hh
swa / rna / StepWiseRNA_FloatingBase_Sampler_Util.hhtypes.hh
swa / rna / StepWiseRNA_JobParameters.cckinematics / FoldTree.hh
swa / rna / StepWiseRNA_JobParameters.ccpose / Pose.hh
swa / rna / StepWiseRNA_JobParameters.hhkinematics / FoldTree.hh
swa / rna / StepWiseRNA_JobParameters.hhpose / Pose.fwd.hh
swa / rna / StepWiseRNA_JobParameters.hhtypes.hh
swa / rna / StepWiseRNA_JobParameters_Setup.ccscoring / constraints / AtomPairConstraint.hh
swa / rna / StepWiseRNA_JobParameters_Setup.ccchemical / ChemicalManager.hh
swa / rna / StepWiseRNA_JobParameters_Setup.ccscoring / constraints / ConstraintSet.hh
swa / rna / StepWiseRNA_JobParameters_Setup.ccscoring / constraints / FadeFunc.hh
swa / rna / StepWiseRNA_JobParameters_Setup.cckinematics / FoldTree.hh
swa / rna / StepWiseRNA_JobParameters_Setup.ccscoring / constraints / Func.fwd.hh
swa / rna / StepWiseRNA_JobParameters_Setup.ccpose / Pose.hh
swa / rna / StepWiseRNA_JobParameters_Setup.ccio / pdb / pose_io.hh
swa / rna / StepWiseRNA_JobParameters_Setup.ccconformation / Residue.hh
swa / rna / StepWiseRNA_JobParameters_Setup.ccscoring / rms_util.tmpl.hh
swa / rna / StepWiseRNA_JobParameters_Setup.ccscoring / rna / RNA_Util.hh
swa / rna / StepWiseRNA_JobParameters_Setup.ccid / TorsionID.hh
swa / rna / StepWiseRNA_JobParameters_Setup.cctypes.hh
swa / rna / StepWiseRNA_JobParameters_Setup.ccpose / util.hh
swa / rna / StepWiseRNA_JobParameters_Setup.ccchemical / util.hh
swa / rna / StepWiseRNA_JobParameters_Setup.ccchemical / VariantType.hh
swa / rna / StepWiseRNA_JobParameters_Setup.hhpose / Pose.fwd.hh
swa / rna / StepWiseRNA_JobParameters_Setup.hhchemical / ResidueTypeSet.fwd.hh
swa / rna / StepWiseRNA_JobParameters_Setup.hhtypes.hh
swa / rna / StepWiseRNA_Minimizer.ccid / AtomID.hh
swa / rna / StepWiseRNA_Minimizer.ccoptimization / AtomTreeMinimizer.hh
swa / rna / StepWiseRNA_Minimizer.ccchemical / AtomType.hh
swa / rna / StepWiseRNA_Minimizer.ccio / silent / BinaryRNASilentStruct.hh
swa / rna / StepWiseRNA_Minimizer.ccconformation / Conformation.hh
swa / rna / StepWiseRNA_Minimizer.ccscoring / Energies.hh
swa / rna / StepWiseRNA_Minimizer.ccscoring / EnergyGraph.hh
swa / rna / StepWiseRNA_Minimizer.ccscoring / EnergyMap.fwd.hh
swa / rna / StepWiseRNA_Minimizer.ccscoring / EnergyMap.hh
swa / rna / StepWiseRNA_Minimizer.ccoptimization / MinimizerOptions.hh
swa / rna / StepWiseRNA_Minimizer.ccpose / Pose.hh
swa / rna / StepWiseRNA_Minimizer.ccscoring / rms_util.tmpl.hh
swa / rna / StepWiseRNA_Minimizer.ccscoring / rna / RNA_TorsionPotential.hh
swa / rna / StepWiseRNA_Minimizer.ccscoring / rna / RNA_Util.hh
swa / rna / StepWiseRNA_Minimizer.ccscoring / ScoreFunction.hh
swa / rna / StepWiseRNA_Minimizer.ccscoring / ScoreFunctionFactory.hh
swa / rna / StepWiseRNA_Minimizer.ccscoring / ScoreType.hh
swa / rna / StepWiseRNA_Minimizer.ccio / silent / SilentFileData.fwd.hh
swa / rna / StepWiseRNA_Minimizer.ccio / silent / SilentFileData.hh
swa / rna / StepWiseRNA_Minimizer.ccid / TorsionID.hh
swa / rna / StepWiseRNA_Minimizer.cctypes.hh
swa / rna / StepWiseRNA_Minimizer.ccchemical / util.hh
swa / rna / StepWiseRNA_Minimizer.ccpose / util.hh
swa / rna / StepWiseRNA_Minimizer.ccchemical / VariantType.hh
swa / rna / StepWiseRNA_Minimizer.hhpose / Pose.fwd.hh
swa / rna / StepWiseRNA_Minimizer.hhconformation / Residue.hh
swa / rna / StepWiseRNA_Minimizer.hhscoring / ScoreFunction.fwd.hh
swa / rna / StepWiseRNA_Minimizer.hhio / silent / SilentFileData.fwd.hh
swa / rna / StepWiseRNA_Minimizer.hhtypes.hh
swa / rna / StepWiseRNA_OutputData.ccscoring / constraints / AngleConstraint.hh
swa / rna / StepWiseRNA_OutputData.ccscoring / constraints / AtomPairConstraint.hh
swa / rna / StepWiseRNA_OutputData.ccoptimization / AtomTreeMinimizer.hh
swa / rna / StepWiseRNA_OutputData.ccchemical / AtomType.hh
swa / rna / StepWiseRNA_OutputData.ccio / silent / BinaryRNASilentStruct.hh
swa / rna / StepWiseRNA_OutputData.ccchemical / ChemicalManager.hh
swa / rna / StepWiseRNA_OutputData.ccscoring / constraints / ConstraintSet.fwd.hh
swa / rna / StepWiseRNA_OutputData.ccscoring / constraints / ConstraintSet.hh
swa / rna / StepWiseRNA_OutputData.cckinematics / MoveMap.hh
swa / rna / StepWiseRNA_OutputData.ccpack / pack_rotamers.hh
swa / rna / StepWiseRNA_OutputData.ccpack / task / PackerTask.hh
swa / rna / StepWiseRNA_OutputData.ccpose / Pose.hh
swa / rna / StepWiseRNA_OutputData.ccio / pdb / pose_io.hh
swa / rna / StepWiseRNA_OutputData.ccconformation / Residue.hh
swa / rna / StepWiseRNA_OutputData.ccconformation / ResidueFactory.hh
swa / rna / StepWiseRNA_OutputData.ccchemical / ResidueTypeSet.hh
swa / rna / StepWiseRNA_OutputData.ccscoring / rms_util.tmpl.hh
swa / rna / StepWiseRNA_OutputData.ccscoring / rna / RNA_BaseDoubletClasses.hh
swa / rna / StepWiseRNA_OutputData.ccscoring / rna / RNA_FittedTorsionInfo.hh
swa / rna / StepWiseRNA_OutputData.ccscoring / rna / RNA_Util.hh
swa / rna / StepWiseRNA_OutputData.ccpack / rotamer_trials.hh
swa / rna / StepWiseRNA_OutputData.ccscoring / ScoreFunction.hh
swa / rna / StepWiseRNA_OutputData.ccscoring / ScoreType.hh
swa / rna / StepWiseRNA_OutputData.ccio / silent / SilentFileData.fwd.hh
swa / rna / StepWiseRNA_OutputData.ccio / silent / SilentFileData.hh
swa / rna / StepWiseRNA_OutputData.ccpack / task / TaskFactory.hh
swa / rna / StepWiseRNA_OutputData.cctypes.hh
swa / rna / StepWiseRNA_OutputData.ccscoring / constraints / util.hh
swa / rna / StepWiseRNA_OutputData.ccchemical / util.hh
swa / rna / StepWiseRNA_OutputData.ccchemical / VariantType.hh
swa / rna / StepWiseRNA_OutputData.hhchemical / AA.hh
swa / rna / StepWiseRNA_OutputData.hhio / silent / BinaryRNASilentStruct.hh
swa / rna / StepWiseRNA_OutputData.hhkinematics / FoldTree.fwd.hh
swa / rna / StepWiseRNA_OutputData.hhoptimization / MinimizerOptions.hh
swa / rna / StepWiseRNA_OutputData.hhkinematics / MoveMap.hh
swa / rna / StepWiseRNA_OutputData.hhpose / Pose.fwd.hh
swa / rna / StepWiseRNA_OutputData.hhconformation / Residue.hh
swa / rna / StepWiseRNA_OutputData.hhio / silent / RNA_SilentStruct.hh
swa / rna / StepWiseRNA_OutputData.hhscoring / ScoreFunction.fwd.hh
swa / rna / StepWiseRNA_OutputData.hhio / silent / SilentFileData.hh
swa / rna / StepWiseRNA_OutputData.hhtypes.hh
swa / rna / StepWiseRNA_PoseSetup.ccpose / annotated_sequence.hh
swa / rna / StepWiseRNA_PoseSetup.ccscoring / constraints / AtomPairConstraint.hh
swa / rna / StepWiseRNA_PoseSetup.ccio / silent / BinaryRNASilentStruct.hh
swa / rna / StepWiseRNA_PoseSetup.ccchemical / ChemicalManager.hh
swa / rna / StepWiseRNA_PoseSetup.ccscoring / constraints / ConstraintSet.hh
swa / rna / StepWiseRNA_PoseSetup.ccscoring / constraints / FadeFunc.hh
swa / rna / StepWiseRNA_PoseSetup.cckinematics / FoldTree.hh
swa / rna / StepWiseRNA_PoseSetup.ccscoring / constraints / Func.fwd.hh
swa / rna / StepWiseRNA_PoseSetup.ccimport_pose / import_pose.hh
swa / rna / StepWiseRNA_PoseSetup.ccpose / Pose.hh
swa / rna / StepWiseRNA_PoseSetup.ccconformation / Residue.hh
swa / rna / StepWiseRNA_PoseSetup.ccconformation / ResidueFactory.hh
swa / rna / StepWiseRNA_PoseSetup.ccchemical / ResidueTypeSet.hh
swa / rna / StepWiseRNA_PoseSetup.ccscoring / rms_util.tmpl.hh
swa / rna / StepWiseRNA_PoseSetup.ccscoring / rna / RNA_Util.hh
swa / rna / StepWiseRNA_PoseSetup.ccid / TorsionID.hh
swa / rna / StepWiseRNA_PoseSetup.cctypes.hh
swa / rna / StepWiseRNA_PoseSetup.ccpose / util.hh
swa / rna / StepWiseRNA_PoseSetup.ccchemical / util.hh
swa / rna / StepWiseRNA_PoseSetup.ccchemical / VariantType.hh
swa / rna / StepWiseRNA_PoseSetup.hhpose / Pose.fwd.hh
swa / rna / StepWiseRNA_PoseSetup.hhchemical / ResidueTypeSet.fwd.hh
swa / rna / StepWiseRNA_PoseSetup.hhtypes.hh
swa / rna / StepWiseRNA_ResidueInfo.ccchemical / AtomType.hh
swa / rna / StepWiseRNA_ResidueInfo.ccconformation / Conformation.hh
swa / rna / StepWiseRNA_ResidueInfo.ccpose / Pose.fwd.hh
swa / rna / StepWiseRNA_ResidueInfo.ccpose / Pose.hh
swa / rna / StepWiseRNA_ResidueInfo.ccconformation / Residue.hh
swa / rna / StepWiseRNA_ResidueInfo.hhpose / Pose.fwd.hh
swa / rna / StepWiseRNA_ResidueInfo.hhtypes.hh
swa / rna / StepWiseRNA_ResidueSampler.ccid / AtomID.hh
swa / rna / StepWiseRNA_ResidueSampler.ccchemical / AtomType.hh
swa / rna / StepWiseRNA_ResidueSampler.ccio / silent / BinaryRNASilentStruct.hh
swa / rna / StepWiseRNA_ResidueSampler.ccchemical / ChemicalManager.hh
swa / rna / StepWiseRNA_ResidueSampler.ccid / DOF_ID.hh
swa / rna / StepWiseRNA_ResidueSampler.ccscoring / Energies.hh
swa / rna / StepWiseRNA_ResidueSampler.ccscoring / EnergyGraph.hh
swa / rna / StepWiseRNA_ResidueSampler.ccscoring / EnergyMap.fwd.hh
swa / rna / StepWiseRNA_ResidueSampler.ccscoring / EnergyMap.hh
swa / rna / StepWiseRNA_ResidueSampler.ccpack / pack_rotamers.hh
swa / rna / StepWiseRNA_ResidueSampler.ccpack / task / PackerTask.hh
swa / rna / StepWiseRNA_ResidueSampler.ccpose / Pose.hh
swa / rna / StepWiseRNA_ResidueSampler.ccio / pdb / pose_io.hh
swa / rna / StepWiseRNA_ResidueSampler.ccconformation / Residue.hh
swa / rna / StepWiseRNA_ResidueSampler.ccconformation / ResidueFactory.hh
swa / rna / StepWiseRNA_ResidueSampler.ccchemical / ResidueTypeSet.hh
swa / rna / StepWiseRNA_ResidueSampler.ccscoring / rms_util.tmpl.hh
swa / rna / StepWiseRNA_ResidueSampler.ccscoring / rna / RNA_FittedTorsionInfo.hh
swa / rna / StepWiseRNA_ResidueSampler.ccscoring / rna / RNA_Util.hh
swa / rna / StepWiseRNA_ResidueSampler.ccpack / rotamer_trials.hh
swa / rna / StepWiseRNA_ResidueSampler.ccscoring / ScoreFunction.hh
swa / rna / StepWiseRNA_ResidueSampler.ccscoring / ScoreFunctionFactory.hh
swa / rna / StepWiseRNA_ResidueSampler.ccscoring / ScoreType.hh
swa / rna / StepWiseRNA_ResidueSampler.ccio / silent / SilentFileData.fwd.hh
swa / rna / StepWiseRNA_ResidueSampler.ccio / silent / SilentFileData.hh
swa / rna / StepWiseRNA_ResidueSampler.ccpack / task / TaskFactory.hh
swa / rna / StepWiseRNA_ResidueSampler.ccpack / task / operation / TaskOperations.hh
swa / rna / StepWiseRNA_ResidueSampler.ccid / TorsionID.hh
swa / rna / StepWiseRNA_ResidueSampler.cctypes.hh
swa / rna / StepWiseRNA_ResidueSampler.ccchemical / util.hh
swa / rna / StepWiseRNA_ResidueSampler.ccpose / util.hh
swa / rna / StepWiseRNA_ResidueSampler.ccchemical / VariantType.hh
swa / rna / StepWiseRNA_ResidueSampler.hhpack / task / PackerTask.fwd.hh
swa / rna / StepWiseRNA_ResidueSampler.hhpose / Pose.fwd.hh
swa / rna / StepWiseRNA_ResidueSampler.hhconformation / Residue.hh
swa / rna / StepWiseRNA_ResidueSampler.hhscoring / ScoreFunction.fwd.hh
swa / rna / StepWiseRNA_ResidueSampler.hhio / silent / SilentFileData.fwd.hh
swa / rna / StepWiseRNA_ResidueSampler.hhtypes.hh
swa / rna / StepWiseRNA_RotamerGenerator.ccpose / Pose.hh
swa / rna / StepWiseRNA_RotamerGenerator.ccscoring / rna / RNA_FittedTorsionInfo.hh
swa / rna / StepWiseRNA_RotamerGenerator.ccscoring / rna / RNA_Util.hh
swa / rna / StepWiseRNA_RotamerGenerator.ccid / TorsionID.hh
swa / rna / StepWiseRNA_RotamerGenerator.hhpose / Pose.fwd.hh
swa / rna / StepWiseRNA_RotamerGenerator.hhid / TorsionID.fwd.hh
swa / rna / StepWiseRNA_RotamerGenerator.hhid / TorsionID.hh
swa / rna / StepWiseRNA_RotamerGenerator.hhtypes.hh
swa / rna / StepWiseRNA_RotamerGenerator_Wrapper.ccpose / Pose.hh
swa / rna / StepWiseRNA_RotamerGenerator_Wrapper.ccscoring / rna / RNA_Util.hh
swa / rna / StepWiseRNA_RotamerGenerator_Wrapper.ccid / TorsionID.hh
swa / rna / StepWiseRNA_RotamerGenerator_Wrapper.hhpose / Pose.fwd.hh
swa / rna / StepWiseRNA_RotamerGenerator_Wrapper.hhid / TorsionID.fwd.hh
swa / rna / StepWiseRNA_RotamerGenerator_Wrapper.hhid / TorsionID.hh
swa / rna / StepWiseRNA_RotamerGenerator_Wrapper.hhtypes.hh
swa / rna / StepWiseRNA_Util.ccscoring / constraints / AngleConstraint.hh
swa / rna / StepWiseRNA_Util.ccid / AtomID.hh
swa / rna / StepWiseRNA_Util.ccid / AtomID_Map.hh
swa / rna / StepWiseRNA_Util.ccscoring / constraints / AtomPairConstraint.hh
swa / rna / StepWiseRNA_Util.ccoptimization / AtomTreeMinimizer.hh
swa / rna / StepWiseRNA_Util.ccchemical / AtomType.hh
swa / rna / StepWiseRNA_Util.ccio / silent / BinaryRNASilentStruct.hh
swa / rna / StepWiseRNA_Util.ccchemical / ChemicalManager.hh
swa / rna / StepWiseRNA_Util.ccscoring / constraints / ConstraintSet.fwd.hh
swa / rna / StepWiseRNA_Util.ccscoring / constraints / ConstraintSet.hh
swa / rna / StepWiseRNA_Util.ccimport_pose / import_pose.hh
swa / rna / StepWiseRNA_Util.cckinematics / MoveMap.hh
swa / rna / StepWiseRNA_Util.ccpack / pack_rotamers.hh
swa / rna / StepWiseRNA_Util.ccpack / task / PackerTask.hh
swa / rna / StepWiseRNA_Util.ccpose / Pose.hh
swa / rna / StepWiseRNA_Util.ccconformation / Residue.hh
swa / rna / StepWiseRNA_Util.ccconformation / ResidueFactory.hh
swa / rna / StepWiseRNA_Util.ccchemical / ResidueTypeSet.hh
swa / rna / StepWiseRNA_Util.ccscoring / rms_util.tmpl.hh
swa / rna / StepWiseRNA_Util.ccscoring / rna / RNA_BaseDoubletClasses.hh
swa / rna / StepWiseRNA_Util.ccscoring / rna / RNA_FittedTorsionInfo.hh
swa / rna / StepWiseRNA_Util.ccscoring / rna / RNA_Util.hh
swa / rna / StepWiseRNA_Util.ccpack / rotamer_trials.hh
swa / rna / StepWiseRNA_Util.ccscoring / ScoreFunction.hh
swa / rna / StepWiseRNA_Util.ccscoring / ScoreType.hh
swa / rna / StepWiseRNA_Util.ccio / silent / SilentFileData.fwd.hh
swa / rna / StepWiseRNA_Util.ccio / silent / SilentFileData.hh
swa / rna / StepWiseRNA_Util.ccpack / task / TaskFactory.hh
swa / rna / StepWiseRNA_Util.cctypes.hh
swa / rna / StepWiseRNA_Util.ccscoring / constraints / util.hh
swa / rna / StepWiseRNA_Util.ccpose / util.hh
swa / rna / StepWiseRNA_Util.ccchemical / util.hh
swa / rna / StepWiseRNA_Util.ccpose / util.tmpl.hh
swa / rna / StepWiseRNA_Util.ccchemical / VariantType.hh
swa / rna / StepWiseRNA_Util.hhchemical / AA.hh
swa / rna / StepWiseRNA_Util.hhio / silent / BinaryRNASilentStruct.hh
swa / rna / StepWiseRNA_Util.hhkinematics / FoldTree.fwd.hh
swa / rna / StepWiseRNA_Util.hhoptimization / MinimizerOptions.hh
swa / rna / StepWiseRNA_Util.hhkinematics / MoveMap.hh
swa / rna / StepWiseRNA_Util.hhpack / task / PackerTask.fwd.hh
swa / rna / StepWiseRNA_Util.hhpose / Pose.fwd.hh
swa / rna / StepWiseRNA_Util.hhconformation / Residue.hh
swa / rna / StepWiseRNA_Util.hhio / silent / RNA_SilentStruct.hh
swa / rna / StepWiseRNA_Util.hhscoring / ScoreFunction.fwd.hh
swa / rna / StepWiseRNA_Util.hhio / silent / SilentFileData.hh
swa / rna / StepWiseRNA_Util.hhtypes.hh
swa / rna / StepWiseRNA_VDW_Bin_Screener.ccid / AtomID_Map.hh
swa / rna / StepWiseRNA_VDW_Bin_Screener.ccchemical / AtomType.hh
swa / rna / StepWiseRNA_VDW_Bin_Screener.ccchemical / ChemicalManager.hh
swa / rna / StepWiseRNA_VDW_Bin_Screener.ccimport_pose / import_pose.hh
swa / rna / StepWiseRNA_VDW_Bin_Screener.cckinematics / MoveMap.hh
swa / rna / StepWiseRNA_VDW_Bin_Screener.ccpose / Pose.hh
swa / rna / StepWiseRNA_VDW_Bin_Screener.ccconformation / Residue.hh
swa / rna / StepWiseRNA_VDW_Bin_Screener.ccconformation / ResidueFactory.hh
swa / rna / StepWiseRNA_VDW_Bin_Screener.ccchemical / ResidueTypeSet.hh
swa / rna / StepWiseRNA_VDW_Bin_Screener.ccscoring / rms_util.tmpl.hh
swa / rna / StepWiseRNA_VDW_Bin_Screener.ccscoring / rna / RNA_Util.hh
swa / rna / StepWiseRNA_VDW_Bin_Screener.cctypes.hh
swa / rna / StepWiseRNA_VDW_Bin_Screener.ccchemical / util.hh
swa / rna / StepWiseRNA_VDW_Bin_Screener.ccchemical / VariantType.hh
swa / rna / StepWiseRNA_VDW_Bin_Screener.hhchemical / AA.hh
swa / rna / StepWiseRNA_VDW_Bin_Screener.hhkinematics / FoldTree.fwd.hh
swa / rna / StepWiseRNA_VDW_Bin_Screener.hhpose / Pose.fwd.hh
swa / rna / StepWiseRNA_VDW_Bin_Screener.hhpose / Pose.hh
swa / rna / StepWiseRNA_VDW_Bin_Screener.hhconformation / Residue.hh
swa / rna / StepWiseRNA_VDW_Bin_Screener.hhtypes.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccscoring / constraints / AngleConstraint.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccscoring / constraints / AtomPairConstraint.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccoptimization / AtomTreeMinimizer.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccchemical / AtomType.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccio / silent / BinaryRNASilentStruct.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccchemical / ChemicalManager.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccconformation / Conformation.fwd.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccscoring / constraints / ConstraintSet.fwd.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccscoring / constraints / ConstraintSet.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccscoring / Energies.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccscoring / EnergyMap.fwd.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccscoring / EnergyMap.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccoptimization / MinimizerOptions.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccpack / pack_rotamers.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccpack / task / PackerTask.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccpose / Pose.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccio / pdb / pose_io.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccconformation / Residue.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccconformation / ResidueFactory.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccchemical / ResidueTypeSet.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccscoring / rms_util.tmpl.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccscoring / rna / RNA_FittedTorsionInfo.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccscoring / rna / RNA_TorsionPotential.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccscoring / rna / RNA_Util.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccpack / rotamer_trials.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccscoring / ScoreFunction.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccscoring / ScoreFunctionFactory.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccio / silent / SilentFileData.fwd.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccio / silent / SilentFileData.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccpack / task / TaskFactory.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccid / TorsionID.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.cctypes.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccscoring / constraints / util.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccchemical / util.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccpose / util.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.ccchemical / VariantType.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.hhchemical / AA.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.hhscoring / constraints / ConstraintSet.fwd.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.hhscoring / constraints / ConstraintSet.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.hhkinematics / FoldTree.fwd.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.hhkinematics / FoldTree.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.hhkinematics / MoveMap.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.hhpose / Pose.fwd.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.hhpose / Pose.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.hhconformation / Residue.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.hhio / silent / RNA_SilentStruct.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.hhscoring / rna / RNA_Util.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.hhscoring / ScoreFunction.fwd.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.hhio / silent / SilentFileData.hh
swa / rna / StepWiseRNA_VirtualRiboseSampler.hhtypes.hh
swa / StepWiseScreener.ccpose / annotated_sequence.hh
swa / StepWiseScreener.ccid / AtomID.hh
swa / StepWiseScreener.ccchemical / ChemicalManager.hh
swa / StepWiseScreener.ccscoring / dssp / Dssp.hh
swa / StepWiseScreener.ccscoring / Energies.hh
swa / StepWiseScreener.cckinematics / Jump.hh
swa / StepWiseScreener.ccpose / Pose.hh
swa / StepWiseScreener.ccio / silent / ProteinSilentStruct.hh
swa / StepWiseScreener.ccscoring / Ramachandran.hh
swa / StepWiseScreener.ccscoring / rms_util.tmpl.hh
swa / StepWiseScreener.ccscoring / ScoreFunction.hh
swa / StepWiseScreener.ccscoring / ScoreFunctionFactory.hh
swa / StepWiseScreener.ccscoring / ScoreType.hh
swa / StepWiseScreener.ccio / silent / SilentFileData.fwd.hh
swa / StepWiseScreener.ccio / silent / SilentFileData.hh
swa / StepWiseScreener.ccutil / SwitchResidueTypeSet.hh
swa / StepWiseScreener.cctypes.hh
swa / StepWiseScreener.ccpose / util.hh
swa / StepWiseScreener.hhkinematics / FoldTree.fwd.hh
swa / StepWiseScreener.hhpose / Pose.fwd.hh
swa / StepWiseScreener.hhscoring / Ramachandran.hh
swa / StepWiseScreener.hhscoring / ScoreFunction.fwd.hh
swa / StepWiseScreener.hhtypes.hh
swa / StepWiseUtil.ccid / AtomID.hh
swa / StepWiseUtil.ccid / AtomID_Map.hh
swa / StepWiseUtil.ccconformation / Conformation.hh
swa / StepWiseUtil.ccscoring / constraints / ConstraintSet.hh
swa / StepWiseUtil.cckinematics / MoveMap.hh
swa / StepWiseUtil.ccpose / Pose.hh
swa / StepWiseUtil.ccconformation / Residue.hh
swa / StepWiseUtil.ccchemical / ResidueTypeSet.hh
swa / StepWiseUtil.ccscoring / rna / RNA_CentroidInfo.hh
swa / StepWiseUtil.ccscoring / rna / RNA_Util.hh
swa / StepWiseUtil.ccscoring / ScoreFunction.hh
swa / StepWiseUtil.ccid / SequenceMapping.hh
swa / StepWiseUtil.cctypes.hh
swa / StepWiseUtil.ccpose / util.hh
swa / StepWiseUtil.ccpose / util.tmpl.hh
swa / StepWiseUtil.ccchemical / VariantType.hh
swa / StepWiseUtil.hhid / AtomID.fwd.hh
swa / StepWiseUtil.hhid / AtomID_Map.fwd.hh
swa / StepWiseUtil.hhscoring / constraints / ConstraintSet.fwd.hh
swa / StepWiseUtil.hhkinematics / FoldTree.fwd.hh
swa / StepWiseUtil.hhkinematics / MoveMap.fwd.hh
swa / StepWiseUtil.hhpose / Pose.fwd.hh
swa / StepWiseUtil.hhio / silent / RNA_SilentStruct.hh
swa / StepWiseUtil.hhscoring / ScoreFunction.fwd.hh
swa / StepWiseUtil.hhtypes.hh
features / strand_assembly / StrandBundleFeatures.ccconformation / Atom.hh
features / strand_assembly / StrandBundleFeatures.ccconformation / Residue.hh
features / strand_assembly / StrandBundleFeatures.ccscoring / ScoreFunction.hh
features / strand_assembly / StrandBundleFeatures.cctypes.hh
features / strand_assembly / StrandBundleFeaturesCreator.hhtypes.hh
abinitio / StrandConstraints.ccscoring / constraints / AmbiguousConstraint.hh
abinitio / StrandConstraints.ccid / AtomID.hh
abinitio / StrandConstraints.ccscoring / constraints / AtomPairConstraint.hh
abinitio / StrandConstraints.ccscoring / constraints / BoundConstraint.hh
abinitio / StrandConstraints.ccscoring / constraints / HarmonicFunc.hh
abinitio / StrandConstraints.ccid / NamedAtomID.hh
abinitio / StrandConstraints.cctypes.hh
abinitio / StrandConstraints.ccpose / util.hh
abinitio / StrandConstraints.hhscoring / constraints / Constraint.fwd.hh
abinitio / StrandConstraints.hhscoring / dssp / PairingsList.fwd.hh
abinitio / StrandConstraints.hhpose / Pose.fwd.hh
abinitio / StrandConstraints.hhscoring / dssp / StrandPairing.hh
abinitio / StrandConstraints.hhtypes.hh
features / strand_assembly / StrandFragment.ccconformation / Residue.hh
features / strand_assembly / StrandFragment.hhpose / Pose.hh
features / strand_assembly / StrandFragment.hhtypes.hh
fldsgn / topology / StrandPairing.hhtypes.hh
simple_filters / StructuralSimilarityEvaluator.ccpose / Pose.hh
simple_filters / StructuralSimilarityEvaluator.ccconformation / Residue.hh
simple_filters / StructuralSimilarityEvaluator.ccscoring / rms_util.hh
simple_filters / StructuralSimilarityEvaluator.cctypes.hh
simple_filters / StructuralSimilarityEvaluator.hhpose / Pose.fwd.hh
simple_filters / StructuralSimilarityEvaluator.hhio / silent / SilentStruct.fwd.hh
simple_filters / StructuralSimilarityEvaluator.hhtypes.hh
noesy_assign / StructureDependentPeakCalibrator.ccscoring / constraints / Constraint.hh
noesy_assign / StructureDependentPeakCalibrator.ccpose / Pose.hh
noesy_assign / StructureDependentPeakCalibrator.hhscoring / constraints / Constraint.hh
noesy_assign / StructureDependentPeakCalibrator.hhid / NamedAtomID.fwd.hh
noesy_assign / StructureDependentPeakCalibrator.hhpose / Pose.hh
noesy_assign / StructureDependentPeakCalibrator.hhtypes.hh
features / StructureFeatures.ccio / silent / BinaryProteinSilentStruct.hh
features / StructureFeatures.ccpose / Pose.hh
features / StructureFeatures.ccpose / util.hh
features / StructureFeatures.hhpose / Pose.fwd.hh
features / StructureFeaturesCreator.hhtypes.hh
noesy_assign / StructureIndependentPeakCalibrator.hhid / NamedAtomID.fwd.hh
noesy_assign / StructureIndependentPeakCalibrator.hhtypes.hh
moves / StructureRestrictor.ccpose / datacache / CacheableDataType.hh
moves / StructureRestrictor.ccconformation / Conformation.hh
moves / StructureRestrictor.ccpose / PDBInfo.hh
moves / StructureRestrictor.ccpose / Pose.hh
features / StructureScoresFeatures.ccscoring / Energies.hh
features / StructureScoresFeatures.ccscoring / EnergiesCacheableDataType.hh
features / StructureScoresFeatures.ccscoring / EnergyMap.hh
features / StructureScoresFeatures.ccscoring / hbonds / hbonds.hh
features / StructureScoresFeatures.ccpose / Pose.hh
features / StructureScoresFeatures.ccconformation / Residue.hh
features / StructureScoresFeatures.ccscoring / ScoreFunction.hh
features / StructureScoresFeatures.ccscoring / ScoreFunctionFactory.hh
features / StructureScoresFeatures.ccscoring / ScoreType.hh
features / StructureScoresFeatures.ccscoring / ScoreTypeManager.hh
features / StructureScoresFeatures.hhscoring / EnergyMap.fwd.hh
features / StructureScoresFeatures.hhpose / Pose.fwd.hh
features / StructureScoresFeatures.hhscoring / ScoreFunction.fwd.hh
features / StructureScoresFeaturesCreator.hhtypes.hh
simple_filters / StructureSimilarityEvaluatorCreator.ccpose / Pose.hh
simple_filters / StructureSimilarityEvaluatorCreator.ccio / silent / silent.fwd.hh
simple_filters / StructureSimilarityEvaluatorCreator.ccimport_pose / pose_stream / SilentFilePoseInputStream.hh
simple_filters / StructureSimilarityEvaluatorCreator.ccio / silent / SilentStruct.hh
simple_filters / StructureSimilarityEvaluatorCreator.ccchemical / util.hh
simple_filters / StructureSimilarityEvaluatorCreator.hhtypes.hh
hotspot_hashing / StubGenerator.ccchemical / ChemicalManager.hh
hotspot_hashing / StubGenerator.ccconformation / Conformation.hh
hotspot_hashing / StubGenerator.cckinematics / Jump.hh
hotspot_hashing / StubGenerator.ccpose / Pose.hh
hotspot_hashing / StubGenerator.ccconformation / Residue.hh
hotspot_hashing / StubGenerator.ccconformation / ResidueFactory.hh
hotspot_hashing / StubGenerator.ccchemical / ResidueType.hh
hotspot_hashing / StubGenerator.ccchemical / ResidueTypeSet.hh
hotspot_hashing / StubGenerator.cckinematics / RT.hh
hotspot_hashing / StubGenerator.cckinematics / Stub.hh
hotspot_hashing / StubGenerator.cctypes.hh
hotspot_hashing / StubGenerator.ccchemical / util.hh
hotspot_hashing / StubGenerator.hhpose / Pose.fwd.hh
hotspot_hashing / StubGenerator.hhconformation / Residue.fwd.hh
hotspot_hashing / StubGenerator.hhkinematics / Stub.fwd.hh
hotspot_hashing / StubGenerator.hhtypes.hh
protein_interface_design / filters / StubScoreFilter.ccchemical / AA.hh
protein_interface_design / filters / StubScoreFilter.ccscoring / constraints / Constraint.hh
protein_interface_design / filters / StubScoreFilter.cckinematics / Jump.hh
protein_interface_design / filters / StubScoreFilter.ccpose / Pose.hh
protein_interface_design / filters / StubScoreFilter.ccscoring / ScoreFunction.hh
protein_interface_design / filters / StubScoreFilter.ccscoring / ScoreType.hh
protein_interface_design / filters / StubScoreFilter.cctypes.hh
protein_interface_design / filters / StubScoreFilter.hhpose / Pose.fwd.hh
protein_interface_design / filters / StubScoreFilterLoops.hhpose / Pose.fwd.hh
protein_interface_design / filters / StubScoreLoopsFilter.ccscoring / constraints / Constraint.hh
protein_interface_design / filters / StubScoreLoopsFilter.cckinematics / Jump.hh
protein_interface_design / filters / StubScoreLoopsFilter.ccpose / Pose.hh
protein_interface_design / filters / StubScoreLoopsFilter.cctypes.hh
protein_interface_design / filters / StubScoreLoopsFilter.hhpose / Pose.fwd.hh
protein_interface_design / movers / SubroutineMover.ccpose / Pose.hh
protein_interface_design / movers / SubroutineMover.cctypes.hh
protein_interface_design / movers / SubroutineMover.hhpose / Pose.fwd.hh
swa / monte_carlo / SubToFullInfo.ccpose / datacache / CacheableDataType.hh
swa / monte_carlo / SubToFullInfo.ccpose / Pose.hh
swa / monte_carlo / SubToFullInfo.hhpose / Pose.fwd.hh
swa / monte_carlo / SubToFullInfo.hhtypes.hh
toolbox / superimpose.ccid / AtomID.hh
toolbox / superimpose.ccid / NamedAtomID.hh
toolbox / superimpose.ccpose / Pose.hh
toolbox / superimpose.ccchemical / ResidueType.hh
toolbox / superimpose.cctypes.hh
toolbox / superimpose.hhpose / Pose.fwd.hh
toolbox / superimpose.hhtypes.hh
simple_moves / SuperimposeMover.ccid / AtomID.hh
simple_moves / SuperimposeMover.ccid / AtomID_Map.hh
simple_moves / SuperimposeMover.ccimport_pose / import_pose.hh
simple_moves / SuperimposeMover.ccconformation / Residue.hh
simple_moves / SuperimposeMover.ccscoring / rms_util.hh
simple_moves / SuperimposeMover.ccid / types.hh
simple_moves / SuperimposeMover.cctypes.hh
simple_moves / SuperimposeMover.ccpose / util.hh
simple_moves / SuperimposeMover.hhpose / Pose.hh
toolbox / pose_metric_calculators / SurfaceCalculator.ccpose / Pose.hh
toolbox / pose_metric_calculators / SurfaceCalculator.ccchemical / ResidueType.hh
toolbox / pose_metric_calculators / SurfaceCalculator.ccpack / interaction_graph / SurfacePotential.hh
toolbox / pose_metric_calculators / SurfaceCalculator.hhpose / Pose.fwd.hh
toolbox / pose_metric_calculators / SurfaceCalculator.hhpose / metrics / PoseMetricCalculatorBase.hh
toolbox / pose_metric_calculators / SurfaceCalculator.hhtypes.hh
surface_docking / SurfaceDockingProtocol.ccpose / datacache / CacheableDataType.hh
surface_docking / SurfaceDockingProtocol.ccfragment / ConstantLengthFragSet.hh
surface_docking / SurfaceDockingProtocol.ccscoring / dssp / Dssp.hh
surface_docking / SurfaceDockingProtocol.cckinematics / FoldTree.hh
surface_docking / SurfaceDockingProtocol.ccfragment / FragmentIO.hh
surface_docking / SurfaceDockingProtocol.cckinematics / MoveMap.hh
surface_docking / SurfaceDockingProtocol.ccpack / task / PackerTask.hh
surface_docking / SurfaceDockingProtocol.ccpose / PDBInfo.hh
surface_docking / SurfaceDockingProtocol.ccpose / Pose.hh
surface_docking / SurfaceDockingProtocol.ccconformation / Residue.hh
surface_docking / SurfaceDockingProtocol.ccchemical / ResidueType.hh
surface_docking / SurfaceDockingProtocol.ccscoring / ScoreFunction.hh
surface_docking / SurfaceDockingProtocol.ccscoring / ScoreFunctionFactory.hh
surface_docking / SurfaceDockingProtocol.ccscoring / solid_surface / SurfaceEnergies.hh
surface_docking / SurfaceDockingProtocol.ccpack / task / TaskFactory.hh
surface_docking / SurfaceDockingProtocol.hhpose / datacache / CacheableDataType.hh
surface_docking / SurfaceDockingProtocol.hhpose / Pose.fwd.hh
surface_docking / SurfaceDockingProtocol.hhscoring / ScoreFunction.fwd.hh
surface_docking / SurfaceDockingProtocol.hhtypes.hh
surface_docking / SurfaceOrientMover.ccpose / datacache / CacheableDataType.hh
surface_docking / SurfaceOrientMover.ccpose / PDBInfo.hh
surface_docking / SurfaceOrientMover.ccpose / Pose.hh
surface_docking / SurfaceOrientMover.hhpose / datacache / CacheableDataType.hh
surface_docking / SurfaceOrientMover.hhpose / Pose.fwd.hh
surface_docking / SurfaceOrientMover.hhtypes.hh
surface_docking / SurfaceParameters.ccpose / datacache / CacheableDataType.hh
surface_docking / SurfaceParameters.hhpose / datacache / CacheableDataType.hh
surface_docking / SurfaceParameters.hhtypes.hh
hotspot_hashing / SurfaceSearchPattern.ccscoring / sc / MolecularSurfaceCalculator.hh
hotspot_hashing / SurfaceSearchPattern.ccpose / Pose.hh
hotspot_hashing / SurfaceSearchPattern.ccconformation / Residue.hh
hotspot_hashing / SurfaceSearchPattern.ccconformation / ResidueFactory.hh
hotspot_hashing / SurfaceSearchPattern.ccchemical / ResidueType.hh
hotspot_hashing / SurfaceSearchPattern.ccchemical / ResidueTypeSet.hh
hotspot_hashing / SurfaceSearchPattern.ccpack / task / TaskFactory.hh
hotspot_hashing / SurfaceSearchPattern.cctypes.hh
hotspot_hashing / SurfaceSearchPattern.hhpose / Pose.hh
hotspot_hashing / SurfaceSearchPattern.hhkinematics / RT.hh
hotspot_hashing / SurfaceSearchPattern.hhpack / task / TaskFactory.fwd.hh
hotspot_hashing / SurfaceSearchPattern.hhtypes.hh
seeded_abinitio / SwapSegment.ccconformation / Conformation.hh
seeded_abinitio / SwapSegment.ccimport_pose / import_pose.hh
seeded_abinitio / SwapSegment.ccpose / Pose.fwd.hh
seeded_abinitio / SwapSegment.ccpose / Pose.hh
seeded_abinitio / SwapSegment.ccconformation / Residue.hh
seeded_abinitio / SwapSegment.ccscoring / ScoreFunction.fwd.hh
seeded_abinitio / SwapSegment.ccscoring / ScoreFunction.hh
seeded_abinitio / SwapSegment.ccpose / selection.hh
seeded_abinitio / SwapSegment.cctypes.hh
seeded_abinitio / SwapSegment.ccpose / util.hh
seeded_abinitio / SwapSegment.hhpose / Pose.fwd.hh
seeded_abinitio / SwapSegment.hhconformation / Residue.fwd.hh
seeded_abinitio / SwapSegment.hhscoring / ScoreFunction.fwd.hh
seeded_abinitio / SwapSegment.hhtypes.hh
simple_moves / SwitchChainOrderMover.ccconformation / Conformation.hh
simple_moves / SwitchChainOrderMover.cckinematics / FoldTree.hh
simple_moves / SwitchChainOrderMover.ccpose / PDBInfo.hh
simple_moves / SwitchChainOrderMover.ccpose / Pose.hh
simple_moves / SwitchChainOrderMover.ccscoring / ScoreFunction.hh
simple_moves / SwitchChainOrderMover.ccpose / util.hh
simple_moves / SwitchChainOrderMover.hhpose / Pose.fwd.hh
simple_moves / SwitchChainOrderMover.hhscoring / ScoreFunction.fwd.hh
simple_moves / SwitchResidueTypeSetMover.cckinematics / Jump.hh
simple_moves / SwitchResidueTypeSetMover.ccchemical / ResidueType.hh
simple_moves / SwitchResidueTypeSetMover.ccutil / SwitchResidueTypeSet.hh
simple_moves / SwitchResidueTypeSetMover.hhpose / Pose.fwd.hh
symmetric_docking / SymDockBaseProtocol.ccscoring / ScoreFunctionFactory.hh
symmetric_docking / SymDockBaseProtocol.hhscoring / ScoreFunction.hh
symmetric_docking / SymDockBaseProtocol.hhtypes.hh
symmetric_docking / SymDockingHiRes.ccconformation / Conformation.hh
symmetric_docking / SymDockingHiRes.cckinematics / MoveMap.hh
symmetric_docking / SymDockingHiRes.ccpack / task / operation / NoRepackDisulfides.hh
symmetric_docking / SymDockingHiRes.ccpack / task / PackerTask.hh
symmetric_docking / SymDockingHiRes.ccpose / Pose.hh
symmetric_docking / SymDockingHiRes.ccconformation / Residue.hh
symmetric_docking / SymDockingHiRes.ccpack / dunbrack / RotamerConstraint.hh
symmetric_docking / SymDockingHiRes.ccscoring / ScoreFunction.hh
symmetric_docking / SymDockingHiRes.ccscoring / ScoreFunctionFactory.hh
symmetric_docking / SymDockingHiRes.ccconformation / symmetry / SymDof.hh
symmetric_docking / SymDockingHiRes.ccconformation / symmetry / SymmetricConformation.hh
symmetric_docking / SymDockingHiRes.ccconformation / symmetry / SymmetryInfo.hh
symmetric_docking / SymDockingHiRes.ccpack / task / TaskFactory.hh
symmetric_docking / SymDockingHiRes.ccpack / task / operation / TaskOperations.hh
symmetric_docking / SymDockingHiRes.ccpack / rotamer_set / UnboundRotamersOperation.hh
symmetric_docking / SymDockingHiRes.ccpose / symmetry / util.hh
symmetric_docking / SymDockingHiRes.hhkinematics / MoveMap.fwd.hh
symmetric_docking / SymDockingHiRes.hhpose / Pose.fwd.hh
symmetric_docking / SymDockingHiRes.hhscoring / ScoreFunction.fwd.hh
symmetric_docking / SymDockingHiRes.hhconformation / symmetry / SymmetricConformation.fwd.hh
symmetric_docking / SymDockingHiRes.hhconformation / symmetry / SymmetryInfo.fwd.hh
symmetric_docking / SymDockingHiRes.hhpack / task / TaskFactory.fwd.hh
symmetric_docking / SymDockingHiRes.hhtypes.hh
simple_moves / symmetry / SymDockingInitialPerturbation.ccscoring / Energies.hh
simple_moves / symmetry / SymDockingInitialPerturbation.cckinematics / Jump.hh
simple_moves / symmetry / SymDockingInitialPerturbation.ccpose / Pose.hh
simple_moves / symmetry / SymDockingInitialPerturbation.ccscoring / ScoreFunctionFactory.hh
simple_moves / symmetry / SymDockingInitialPerturbation.ccconformation / symmetry / SymmetricConformation.hh
simple_moves / symmetry / SymDockingInitialPerturbation.ccscoring / symmetry / SymmetricScoreFunction.hh
simple_moves / symmetry / SymDockingInitialPerturbation.ccconformation / symmetry / SymmetryInfo.hh
simple_moves / symmetry / SymDockingInitialPerturbation.ccpose / symmetry / util.hh
simple_moves / symmetry / SymDockingInitialPerturbation.hhkinematics / Jump.fwd.hh
simple_moves / symmetry / SymDockingInitialPerturbation.hhconformation / symmetry / SymDof.fwd.hh
simple_moves / symmetry / SymDockingInitialPerturbation.hhconformation / symmetry / SymmetricConformation.fwd.hh
simple_moves / symmetry / SymDockingInitialPerturbation.hhscoring / symmetry / SymmetricScoreFunction.fwd.hh
simple_moves / symmetry / SymDockingInitialPerturbation.hhconformation / symmetry / SymmetryInfo.fwd.hh
simple_moves / symmetry / SymDockingInitialPerturbation.hhconformation / symmetry / SymSlideInfo.hh
symmetric_docking / SymDockingLowRes.cckinematics / FoldTree.hh
symmetric_docking / SymDockingLowRes.cckinematics / MoveMap.hh
symmetric_docking / SymDockingLowRes.ccpose / Pose.hh
symmetric_docking / SymDockingLowRes.ccscoring / ScoreFunction.hh
symmetric_docking / SymDockingLowRes.ccconformation / symmetry / SymDof.hh
symmetric_docking / SymDockingLowRes.ccconformation / symmetry / SymmetricConformation.hh
symmetric_docking / SymDockingLowRes.ccconformation / symmetry / SymmetryInfo.hh
symmetric_docking / SymDockingLowRes.ccpose / symmetry / util.hh
symmetric_docking / SymDockingLowRes.hhkinematics / MoveMap.fwd.hh
symmetric_docking / SymDockingLowRes.hhpose / Pose.fwd.hh
symmetric_docking / SymDockingLowRes.hhscoring / ScoreFunction.fwd.hh
symmetric_docking / SymDockProtocol.ccpose / datacache / CacheableDataType.hh
symmetric_docking / SymDockProtocol.ccscoring / Energies.hh
symmetric_docking / SymDockProtocol.ccimport_pose / import_pose.hh
symmetric_docking / SymDockProtocol.ccpack / task / operation / NoRepackDisulfides.hh
symmetric_docking / SymDockProtocol.ccpack / task / operation / OperateOnCertainResidues.hh
symmetric_docking / SymDockProtocol.ccpack / task / PackerTask.hh
symmetric_docking / SymDockProtocol.ccpose / Pose.hh
symmetric_docking / SymDockProtocol.ccpack / task / operation / ResFilters.hh
symmetric_docking / SymDockProtocol.ccpack / task / operation / ResLvlTaskOperations.hh
symmetric_docking / SymDockProtocol.ccscoring / rms_util.hh
symmetric_docking / SymDockProtocol.ccscoring / rms_util.tmpl.hh
symmetric_docking / SymDockProtocol.ccscoring / ScoreFunctionFactory.hh
symmetric_docking / SymDockProtocol.ccconformation / symmetry / SymmetricConformation.hh
symmetric_docking / SymDockProtocol.ccscoring / symmetry / SymmetricScoreFunction.hh
symmetric_docking / SymDockProtocol.ccconformation / symmetry / SymmetryInfo.hh
symmetric_docking / SymDockProtocol.ccpack / task / TaskFactory.fwd.hh
symmetric_docking / SymDockProtocol.ccpack / task / TaskFactory.hh
symmetric_docking / SymDockProtocol.ccpack / task / operation / TaskOperations.hh
symmetric_docking / SymDockProtocol.cctypes.hh
symmetric_docking / SymDockProtocol.ccscoring / electron_density / util.hh
symmetric_docking / SymDockProtocol.ccpose / symmetry / util.hh
symmetric_docking / SymDockProtocol.ccpose / util.hh
symmetric_docking / SymDockProtocol.hhkinematics / MoveMap.fwd.hh
symmetric_docking / SymDockProtocol.hhscoring / ScoreFunction.fwd.hh
symmetric_docking / SymDockProtocol.hhconformation / symmetry / SymmetricConformation.fwd.hh
symmetric_docking / SymDockProtocol.hhscoring / symmetry / SymmetricScoreFunction.fwd.hh
symmetric_docking / SymDockProtocol.hhconformation / symmetry / SymmetryInfo.fwd.hh
symmetric_docking / SymDockProtocol.hhpack / task / TaskFactory.fwd.hh
symmetric_docking / SymDockProtocol.hhtypes.hh
symmetric_docking / SymFoldandDockMoveRbJumpMover.ccpose / symmetry / util.hh
symmetric_docking / SymFoldandDockMoveRbJumpMover.hhpose / Pose.fwd.hh
symmetric_docking / SymFoldandDockRbTrialMover.ccpose / Pose.hh
symmetric_docking / SymFoldandDockRbTrialMover.ccscoring / ScoreFunction.hh
symmetric_docking / SymFoldandDockRbTrialMover.ccscoring / ScoreFunctionFactory.hh
symmetric_docking / SymFoldandDockRbTrialMover.ccconformation / symmetry / SymmetricConformation.hh
symmetric_docking / SymFoldandDockRbTrialMover.ccconformation / symmetry / SymmetryInfo.hh
symmetric_docking / SymFoldandDockRbTrialMover.ccpose / symmetry / util.hh
symmetric_docking / SymFoldandDockRbTrialMover.hhpose / Pose.fwd.hh
symmetric_docking / SymFoldandDockRbTrialMover.hhscoring / ScoreFunction.hh
symmetric_docking / SymFoldandDockRbTrialMover.hhconformation / symmetry / SymmetricConformation.fwd.hh
symmetric_docking / SymFoldandDockRbTrialMover.hhconformation / symmetry / SymmetryInfo.fwd.hh
symmetric_docking / SymFoldandDockSlideTrialMover.ccpose / Pose.hh
symmetric_docking / SymFoldandDockSlideTrialMover.ccconformation / symmetry / SymDof.hh
symmetric_docking / SymFoldandDockSlideTrialMover.ccconformation / symmetry / SymmetricConformation.hh
symmetric_docking / SymFoldandDockSlideTrialMover.ccscoring / symmetry / SymmetricScoreFunction.hh
symmetric_docking / SymFoldandDockSlideTrialMover.ccconformation / symmetry / SymmetryInfo.hh
symmetric_docking / SymFoldandDockSlideTrialMover.ccpose / symmetry / util.hh
symmetric_docking / SymFoldandDockSlideTrialMover.hhpose / Pose.fwd.hh
symmetric_docking / SymFoldandDockSlideTrialMover.hhconformation / symmetry / SymmetricConformation.fwd.hh
symmetric_docking / SymFoldandDockSlideTrialMover.hhconformation / symmetry / SymmetryInfo.fwd.hh
simple_moves / SymmetricFragmentMover.ccfragment / FragData.hh
simple_moves / SymmetricFragmentMover.ccfragment / Frame.hh
simple_moves / SymmetricFragmentMover.hhfragment / FragSet.hh
simple_moves / SymmetricFragmentMover.hhfragment / Frame.fwd.hh
simple_moves / SymmetricFragmentMover.hhkinematics / MoveMap.hh
simple_moves / SymmetricFragmentMover.hhpose / Pose.fwd.hh
simple_filters / SymmetricMotifFilter.ccid / AtomID.hh
simple_filters / SymmetricMotifFilter.ccid / AtomID_Map.hh
simple_filters / SymmetricMotifFilter.ccpose / datacache / cacheable_observers.hh
simple_filters / SymmetricMotifFilter.ccconformation / Conformation.hh
simple_filters / SymmetricMotifFilter.ccimport_pose / import_pose.hh
simple_filters / SymmetricMotifFilter.ccpose / PDBInfo.hh
simple_filters / SymmetricMotifFilter.ccpose / Pose.hh
simple_filters / SymmetricMotifFilter.ccscoring / rms_util.hh
simple_filters / SymmetricMotifFilter.ccscoring / rms_util.tmpl.hh
simple_filters / SymmetricMotifFilter.ccconformation / symmetry / SymmetricConformation.hh
simple_filters / SymmetricMotifFilter.ccconformation / symmetry / SymmetryInfo.hh
simple_filters / SymmetricMotifFilter.cctypes.hh
simple_filters / SymmetricMotifFilter.ccpose / symmetry / util.hh
simple_filters / SymmetricMotifFilter.hhpose / Pose.fwd.hh
simple_filters / SymmetricMotifFilter.hhtypes.hh
simple_moves / symmetry / SymmetricRMSMover.ccpose / datacache / CacheableDataType.hh
simple_moves / symmetry / SymmetricRMSMover.ccscoring / rms_util.hh
simple_moves / symmetry / SymmetricRMSMover.ccscoring / rms_util.tmpl.hh
simple_moves / symmetry / SymmetricRMSMover.ccconformation / symmetry / SymmetricConformation.hh
simple_moves / symmetry / SymmetricRMSMover.ccconformation / symmetry / SymmetryInfo.hh
simple_moves / symmetry / SymmetricRMSMover.ccpose / symmetry / util.hh
simple_moves / symmetry / SymmetricRMSMover.hhpose / Pose.fwd.hh
simple_moves / symmetry / SymmetricRMSMover.hhconformation / symmetry / SymmetricConformation.fwd.hh
simple_moves / symmetry / SymmetricRMSMover.hhconformation / symmetry / SymmetryInfo.fwd.hh
simple_moves / symmetry / SymMinMover.ccoptimization / CartesianMinimizer.hh
simple_moves / symmetry / SymMinMover.ccoptimization / MinimizerOptions.hh
simple_moves / symmetry / SymMinMover.cckinematics / MoveMap.hh
simple_moves / symmetry / SymMinMover.ccpose / Pose.fwd.hh
simple_moves / symmetry / SymMinMover.ccpose / Pose.hh
simple_moves / symmetry / SymMinMover.ccscoring / ScoreFunction.hh
simple_moves / symmetry / SymMinMover.ccscoring / ScoreFunctionFactory.hh
simple_moves / symmetry / SymMinMover.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
simple_moves / symmetry / SymMinMover.ccconformation / symmetry / SymmetricConformation.hh
simple_moves / symmetry / SymMinMover.ccconformation / symmetry / SymmetryInfo.hh
simple_moves / symmetry / SymMinMover.ccpose / symmetry / util.hh
simple_moves / symmetry / SymPackRotamersMover.ccpack / interaction_graph / InteractionGraphBase.hh
simple_moves / symmetry / SymPackRotamersMover.ccpack / pack_rotamers.hh
simple_moves / symmetry / SymPackRotamersMover.ccpack / task / PackerTask.hh
simple_moves / symmetry / SymPackRotamersMover.ccpose / Pose.hh
simple_moves / symmetry / SymPackRotamersMover.ccpack / rotamer_set / RotamerSets.hh
simple_moves / symmetry / SymPackRotamersMover.ccscoring / ScoreFunction.hh
simple_moves / symmetry / SymPackRotamersMover.ccscoring / ScoreFunctionFactory.hh
simple_moves / symmetry / SymPackRotamersMover.ccconformation / symmetry / SymmetricConformation.hh
simple_moves / symmetry / SymPackRotamersMover.ccpack / rotamer_set / symmetry / SymmetricRotamerSets.hh
simple_moves / symmetry / SymPackRotamersMover.ccconformation / symmetry / SymmetryInfo.fwd.hh
simple_moves / symmetry / SymPackRotamersMover.ccconformation / symmetry / SymmetryInfo.hh
simple_moves / symmetry / SymPackRotamersMover.ccpack / task / TaskFactory.hh
simple_moves / symmetry / SymPackRotamersMover.ccpose / symmetry / util.hh
simple_moves / symmetry / SymPackRotamersMover.hhpack / rotamer_set / RotamerSets.fwd.hh
simple_moves / symmetry / SymPackRotamersMover.hhpack / rotamer_set / symmetry / SymmetricRotamerSets.fwd.hh
symmetric_docking / SymRestrictTaskForDocking.cckinematics / Jump.hh
symmetric_docking / SymRestrictTaskForDocking.ccpack / task / PackerTask.hh
symmetric_docking / SymRestrictTaskForDocking.ccscoring / ScoreFunction.hh
symmetric_docking / SymRestrictTaskForDocking.hhpack / task / PackerTask.fwd.hh
symmetric_docking / SymRestrictTaskForDocking.hhpose / Pose.fwd.hh
symmetric_docking / SymRestrictTaskForDocking.hhscoring / ScoreFunction.fwd.hh
symmetric_docking / SymRestrictTaskForDocking.hhpack / task / operation / TaskOperation.hh
symmetric_docking / SymRestrictTaskForDocking.hhtypes.hh
simple_moves / symmetry / SymRotamerTrialsMover.ccscoring / Energies.hh
simple_moves / symmetry / SymRotamerTrialsMover.ccpack / task / PackerTask.hh
simple_moves / symmetry / SymRotamerTrialsMover.ccpose / PDBInfo.hh
simple_moves / symmetry / SymRotamerTrialsMover.ccpose / Pose.hh
simple_moves / symmetry / SymRotamerTrialsMover.ccpack / rotamer_trials.hh
simple_moves / symmetry / SymRotamerTrialsMover.ccscoring / ScoreFunction.hh
simple_moves / symmetry / SymRotamerTrialsMover.ccconformation / symmetry / SymmetricConformation.hh
simple_moves / symmetry / SymRotamerTrialsMover.ccconformation / symmetry / SymmetryInfo.fwd.hh
simple_moves / symmetry / SymRotamerTrialsMover.ccconformation / symmetry / SymmetryInfo.hh
simple_moves / symmetry / SymRotamerTrialsMover.ccpack / task / TaskFactory.hh
simple_moves / symmetry / SymRotamerTrialsMover.ccpose / symmetry / util.hh
simple_moves / symmetry / SymRotamerTrialsMover.hhconformation / symmetry / SymmetricConformation.fwd.hh
simple_moves / symmetry / SymRotamerTrialsMover.hhconformation / symmetry / SymmetryInfo.fwd.hh
simple_moves / symmetry / SymShakeStructureMover.ccchemical / AA.hh
simple_moves / symmetry / SymShakeStructureMover.ccid / AtomID.hh
simple_moves / symmetry / SymShakeStructureMover.ccoptimization / AtomTreeMinimizer.hh
simple_moves / symmetry / SymShakeStructureMover.ccscoring / constraints / Constraints.hh
simple_moves / symmetry / SymShakeStructureMover.ccscoring / constraints / ConstraintSet.fwd.hh
simple_moves / symmetry / SymShakeStructureMover.ccscoring / constraints / ConstraintSet.hh
simple_moves / symmetry / SymShakeStructureMover.ccid / DOF_ID.hh
simple_moves / symmetry / SymShakeStructureMover.ccscoring / constraints / Func.hh
simple_moves / symmetry / SymShakeStructureMover.ccscoring / constraints / HarmonicFunc.hh
simple_moves / symmetry / SymShakeStructureMover.cckinematics / Jump.hh
simple_moves / symmetry / SymShakeStructureMover.ccoptimization / MinimizerOptions.hh
simple_moves / symmetry / SymShakeStructureMover.cckinematics / MoveMap.hh
simple_moves / symmetry / SymShakeStructureMover.ccpose / Pose.fwd.hh
simple_moves / symmetry / SymShakeStructureMover.ccpose / Pose.hh
simple_moves / symmetry / SymShakeStructureMover.ccscoring / ScoreFunction.hh
simple_moves / symmetry / SymShakeStructureMover.ccscoring / ScoreFunctionFactory.hh
simple_moves / symmetry / SymShakeStructureMover.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
simple_moves / symmetry / SymShakeStructureMover.ccscoring / symmetry / SymmetricScoreFunction.hh
simple_moves / symmetry / SymShakeStructureMover.cctypes.hh
simple_moves / symmetry / SymShakeStructureMover.ccpose / symmetry / util.hh
simple_moves / symmetry / SymShakeStructureMover.hhpose / Pose.fwd.hh
simple_moves / symmetry / SymShakeStructureMover.hhscoring / symmetry / SymmetricScoreFunction.fwd.hh
simple_moves / symmetry / SymShakeStructureMover.hhtypes.hh
symmetric_docking / SymSidechainMinMover.cckinematics / MoveMap.hh
symmetric_docking / SymSidechainMinMover.ccpack / task / PackerTask.hh
symmetric_docking / SymSidechainMinMover.ccpose / Pose.hh
symmetric_docking / SymSidechainMinMover.ccscoring / ScoreFunction.hh
symmetric_docking / SymSidechainMinMover.ccscoring / ScoreFunctionFactory.hh
symmetric_docking / SymSidechainMinMover.ccpack / task / TaskFactory.hh
symmetric_docking / SymSidechainMinMover.cctypes.hh
symmetric_docking / SymSidechainMinMover.ccpose / symmetry / util.hh
symmetric_docking / SymSidechainMinMover.hhkinematics / MoveMap.fwd.hh
symmetric_docking / SymSidechainMinMover.hhpack / task / PackerTask.fwd.hh
symmetric_docking / SymSidechainMinMover.hhpose / Pose.fwd.hh
symmetric_docking / SymSidechainMinMover.hhscoring / ScoreFunction.fwd.hh
symmetric_docking / SymSidechainMinMover.hhpack / task / TaskFactory.fwd.hh
symmetric_docking / SymSidechainMinMover.hhtypes.hh
simple_moves / TailsScoreMover.ccpose / Pose.hh
simple_moves / TailsScoreMover.cctypes.hh
simple_moves / TailsScoreMover.ccpose / util.hh
simple_moves / TailsScoreMover.hhscoring / ScoreFunction.hh
simple_moves / TailsScoreMover.hhtypes.hh
frag_picker / scores / TalosSSSimilarity.ccfragment / SecondaryStructure.hh
frag_picker / scores / TalosSSSimilarity.cctypes.hh
frag_picker / scores / TalosSSSimilarity.hhfragment / SecondaryStructure.hh
frag_picker / scores / TalosSSSimilarity.hhtypes.hh
protein_interface_design / movers / TaskAwareCsts.ccid / AtomID.hh
protein_interface_design / movers / TaskAwareCsts.ccconformation / Conformation.hh
protein_interface_design / movers / TaskAwareCsts.ccscoring / constraints / CoordinateConstraint.hh
protein_interface_design / movers / TaskAwareCsts.ccscoring / constraints / HarmonicFunc.hh
protein_interface_design / movers / TaskAwareCsts.ccpose / Pose.hh
protein_interface_design / movers / TaskAwareCsts.ccconformation / Residue.hh
protein_interface_design / movers / TaskAwareCsts.ccpack / task / TaskFactory.hh
protein_interface_design / movers / TaskAwareCsts.ccpack / task / operation / TaskOperations.hh
protein_interface_design / movers / TaskAwareCsts.ccconformation / util.hh
protein_interface_design / movers / TaskAwareCsts.hhpose / Pose.fwd.hh
protein_interface_design / movers / TaskAwareCsts.hhpack / task / TaskFactory.fwd.hh
simple_moves / TaskAwareMinMover.cckinematics / MoveMap.hh
simple_moves / TaskAwareMinMover.ccpack / task / PackerTask.hh
simple_moves / TaskAwareMinMover.ccscoring / ScoreFunction.hh
simple_moves / TaskAwareMinMover.ccpack / task / TaskFactory.hh
simple_moves / TaskAwareMinMover.cctypes.hh
simple_moves / TaskAwareMinMover.hhpose / Pose.fwd.hh
simple_moves / TaskAwareMinMover.hhpack / task / TaskFactory.fwd.hh
jd2 / parser / TaskOperationLoader.ccpack / task / operation / TaskOperation.hh
jd2 / parser / TaskOperationLoader.ccpack / task / operation / TaskOperationFactory.hh
canonical_sampling / TemperatureController.ccscoring / ScoreFunction.hh
canonical_sampling / TemperatureController.ccpack / task / TaskFactory.hh
canonical_sampling / TemperatureController.ccpack / task / operation / TaskOperations.hh
canonical_sampling / TemperatureController.cctypes.hh
canonical_sampling / TemperatureController.hhpose / Pose.fwd.hh
canonical_sampling / TemperatureController.hhtypes.hh
docking / TemperedDocking.ccchemical / ChemicalManager.fwd.hh
docking / TemperedDocking.cckinematics / FoldTree.hh
docking / TemperedDocking.cckinematics / MoveMap.hh
docking / TemperedDocking.ccpose / Pose.hh
docking / TemperedDocking.ccscoring / ScoreFunction.hh
docking / TemperedDocking.ccscoring / ScoreFunctionFactory.hh
docking / TemperedDocking.hhkinematics / FoldTree.hh
docking / TemperedDocking.hhpose / Pose.fwd.hh
docking / TemperedDocking.hhscoring / ScoreFunction.hh
docking / TemperedDocking.hhtypes.hh
canonical_sampling / TemperingBase.ccscoring / ScoreFunction.hh
canonical_sampling / TemperingBase.ccpack / task / TaskFactory.hh
canonical_sampling / TemperingBase.ccpack / task / operation / TaskOperations.hh
canonical_sampling / TemperingBase.cctypes.hh
canonical_sampling / TemperingBase.hhpose / Pose.fwd.hh
canonical_sampling / TemperingBase.hhtypes.hh
abinitio / Template.ccid / AtomID.hh
abinitio / Template.ccscoring / constraints / AtomPairConstraint.hh
abinitio / Template.ccscoring / constraints / ConstraintIO.hh
abinitio / Template.ccscoring / constraints / ConstraintSet.hh
abinitio / Template.ccsequence / DerivedSequenceMapping.hh
abinitio / Template.ccfragment / FragData.hh
abinitio / Template.ccfragment / FragSet.hh
abinitio / Template.ccfragment / Frame.hh
abinitio / Template.ccfragment / FrameList.hh
abinitio / Template.ccscoring / constraints / HarmonicFunc.hh
abinitio / Template.cckinematics / MoveMap.hh
abinitio / Template.ccscoring / constraints / NamedAtomPairConstraint.hh
abinitio / Template.ccscoring / dssp / PairingsList.hh
abinitio / Template.ccpose / Pose.hh
abinitio / Template.ccconformation / Residue.hh
abinitio / Template.ccscoring / dssp / StrandPairing.hh
abinitio / Template.cctypes.hh
abinitio / Template.ccsequence / util.hh
abinitio / Template.hhscoring / constraints / AtomPairConstraint.fwd.hh
abinitio / Template.hhsequence / DerivedSequenceMapping.hh
abinitio / Template.hhfragment / FragSet.fwd.hh
abinitio / Template.hhfragment / FrameList.fwd.hh
abinitio / Template.hhscoring / constraints / NamedAtomPairConstraint.fwd.hh
abinitio / Template.hhscoring / dssp / PairingsList.fwd.hh
abinitio / Template.hhpose / Pose.fwd.hh
abinitio / Template.hhfragment / SingleResidueFragData.fwd.hh
abinitio / Template.hhscoring / dssp / StrandPairing.fwd.hh
abinitio / Template.hhtypes.hh
topology_broker / TemplateFragmentClaimer.ccfragment / BBTorsionSRFD.hh
topology_broker / TemplateFragmentClaimer.ccfragment / ConstantLengthFragSet.hh
topology_broker / TemplateFragmentClaimer.ccfragment / FragData.hh
topology_broker / TemplateFragmentClaimer.ccfragment / FragSet.hh
topology_broker / TemplateFragmentClaimer.ccfragment / FrameList.hh
topology_broker / TemplateFragmentClaimer.cckinematics / MoveMap.hh
topology_broker / TemplateFragmentClaimer.ccpose / Pose.hh
topology_broker / TemplateFragmentClaimer.hhpose / Pose.fwd.hh
hybridization / TemplateHistory.ccpose / datacache / CacheableDataType.hh
hybridization / TemplateHistory.ccpose / Pose.hh
hybridization / TemplateHistory.hhpose / Pose.fwd.hh
hybridization / TemplateHistory.hhtypes.hh
topology_broker / TemplateJumpClaimer.ccfragment / FragSet.hh
topology_broker / TemplateJumpClaimer.cckinematics / MoveMap.hh
topology_broker / TemplateJumpClaimer.ccscoring / dssp / PairingsList.hh
topology_broker / TemplateJumpClaimer.ccpose / Pose.hh
topology_broker / TemplateJumpClaimer.ccfragment / SecondaryStructure.hh
topology_broker / TemplateJumpClaimer.hhscoring / dssp / PairingsList.hh
topology_broker / TemplateJumpClaimer.hhpose / Pose.fwd.hh
topology_broker / TemplateJumpClaimer.hhfragment / SecondaryStructure.hh
abinitio / TemplateJumpSetup.ccfragment / FragSet.hh
abinitio / TemplateJumpSetup.ccfragment / Frame.hh
abinitio / TemplateJumpSetup.ccfragment / FrameList.hh
abinitio / TemplateJumpSetup.cckinematics / MoveMap.hh
abinitio / TemplateJumpSetup.ccfragment / OrderedFragSet.hh
abinitio / TemplateJumpSetup.ccfragment / SecondaryStructure.hh
abinitio / TemplateJumpSetup.cctypes.hh
abinitio / TemplateJumpSetup.hhfragment / FragData.fwd.hh
abinitio / TemplateJumpSetup.hhfragment / FragSet.fwd.hh
abinitio / TemplateJumpSetup.hhfragment / FrameList.fwd.hh
abinitio / TemplateJumpSetup.hhscoring / dssp / PairingsList.hh
abinitio / TemplateJumpSetup.hhtypes.hh
abinitio / Templates.ccid / AtomID.hh
abinitio / Templates.ccscoring / constraints / AtomPairConstraint.hh
abinitio / Templates.ccchemical / ChemicalManager.fwd.hh
abinitio / Templates.ccfragment / ConstantLengthFragSet.hh
abinitio / Templates.ccscoring / constraints / ConstraintSet.hh
abinitio / Templates.ccfragment / FragData.hh
abinitio / Templates.ccfragment / FragID_Iterator.hh
abinitio / Templates.ccfragment / FragSet.hh
abinitio / Templates.ccfragment / FrameIteratorWorker_.hh
abinitio / Templates.ccimport_pose / import_pose.hh
abinitio / Templates.ccscoring / constraints / NamedAtomPairConstraint.hh
abinitio / Templates.ccpose / Pose.hh
abinitio / Templates.ccfragment / SecondaryStructure.hh
abinitio / Templates.ccfragment / SecstructSRFD.hh
abinitio / Templates.ccid / SequenceMapping.hh
abinitio / Templates.ccutil / SwitchResidueTypeSet.hh
abinitio / Templates.cctypes.hh
abinitio / Templates.ccpose / util.hh
abinitio / Templates.hhscoring / constraints / ConstraintSet.fwd.hh
abinitio / Templates.hhfragment / FragData.fwd.hh
abinitio / Templates.hhfragment / FragSet.fwd.hh
abinitio / Templates.hhscoring / dssp / PairingsList.fwd.hh
abinitio / Templates.hhscoring / dssp / PairingsList.hh
abinitio / Templates.hhpose / Pose.fwd.hh
abinitio / Templates.hhfragment / SecondaryStructure.fwd.hh
abinitio / Templates.hhfragment / SingleResidueFragData.fwd.hh
abinitio / Templates.hhtypes.hh
scoring / methods / pcs2 / TensorsOptimizer.hhoptimization / Multifunc.hh
scoring / methods / pcs / TensorsOptimizer.hhoptimization / Multifunc.hh
scoring / methods / pcs2 / TensorsOptimizerFix.hhoptimization / Multifunc.hh
scoring / methods / pcs2 / TensorsOptimizerSvd.hhoptimization / Multifunc.hh
simple_filters / TerminusDistanceFilter.ccchemical / AA.hh
simple_filters / TerminusDistanceFilter.ccchemical / AtomType.hh
simple_filters / TerminusDistanceFilter.ccchemical / ChemicalManager.fwd.hh
simple_filters / TerminusDistanceFilter.ccconformation / Conformation.hh
simple_filters / TerminusDistanceFilter.ccscoring / Energies.hh
simple_filters / TerminusDistanceFilter.cckinematics / FoldTree.hh
simple_filters / TerminusDistanceFilter.ccpack / pack_rotamers.hh
simple_filters / TerminusDistanceFilter.ccpack / task / PackerTask.hh
simple_filters / TerminusDistanceFilter.ccpose / PDBInfo.hh
simple_filters / TerminusDistanceFilter.ccpose / Pose.hh
simple_filters / TerminusDistanceFilter.ccscoring / ScoreFunction.hh
simple_filters / TerminusDistanceFilter.ccscoring / ScoreFunctionFactory.hh
simple_filters / TerminusDistanceFilter.ccscoring / ScoreType.hh
simple_filters / TerminusDistanceFilter.ccscoring / ScoreTypeManager.hh
simple_filters / TerminusDistanceFilter.ccutil / SwitchResidueTypeSet.hh
simple_filters / TerminusDistanceFilter.ccconformation / symmetry / SymmetricConformation.hh
simple_filters / TerminusDistanceFilter.ccscoring / symmetry / SymmetricScoreFunction.hh
simple_filters / TerminusDistanceFilter.ccconformation / symmetry / SymmetryInfo.hh
simple_filters / TerminusDistanceFilter.ccpack / task / TaskFactory.hh
simple_filters / TerminusDistanceFilter.cctypes.hh
simple_filters / TerminusDistanceFilter.ccpose / symmetry / util.hh
simple_filters / TerminusDistanceFilter.hhpose / Pose.fwd.hh
simple_filters / TerminusDistanceFilter.hhscoring / ScoreFunction.hh
simple_filters / TerminusDistanceFilter.hhscoring / ScoreType.hh
simple_filters / TerminusDistanceFilter.hhtypes.hh
ligand_docking / TetherLigand.cckinematics / tree / Atom.hh
ligand_docking / TetherLigand.cckinematics / AtomTree.hh
ligand_docking / TetherLigand.ccconformation / Conformation.hh
ligand_docking / TetherLigand.ccscoring / constraints / CoordinateConstraint.hh
ligand_docking / TetherLigand.ccscoring / constraints / HarmonicFunc.hh
ligand_docking / TetherLigand.ccpose / Pose.hh
ligand_docking / TetherLigand.cctypes.hh
ligand_docking / TetherLigand.ccpose / util.hh
ligand_docking / TetherLigand.hhscoring / constraints / Constraint.fwd.hh
canonical_sampling / ThermodynamicMover.ccid / DOF_ID_Range.hh
canonical_sampling / ThermodynamicMover.cctypes.hh
canonical_sampling / ThermodynamicMover.hhid / DOF_ID_Range.fwd.hh
canonical_sampling / ThermodynamicMover.hhid / DOF_ID_Range.hh
canonical_sampling / ThermodynamicMover.hhpose / Pose.fwd.hh
canonical_sampling / ThermodynamicMover.hhid / TorsionID_Range.fwd.hh
canonical_sampling / ThermodynamicMover.hhid / TorsionID_Range.hh
canonical_sampling / ThermodynamicMover.hhtypes.hh
canonical_sampling / ThermodynamicObserver.cctypes.hh
canonical_sampling / ThermodynamicObserver.hhpose / Pose.fwd.hh
canonical_sampling / ThermodynamicObserver.hhtypes.hh
comparative_modeling / ThreadingJob.ccpose / Pose.hh
comparative_modeling / ThreadingJob.ccsequence / ScoringScheme.fwd.hh
comparative_modeling / ThreadingJob.ccsequence / Sequence.hh
comparative_modeling / ThreadingJob.ccid / SequenceMapping.hh
comparative_modeling / ThreadingJob.ccsequence / SimpleScoringScheme.hh
comparative_modeling / ThreadingJob.ccsequence / SWAligner.hh
comparative_modeling / ThreadingJob.cctypes.hh
comparative_modeling / ThreadingJob.hhsequence / SequenceAlignment.hh
comparative_modeling / ThreadingJob.hhtypes.hh
comparative_modeling / ThreadingJobInputter.ccpose / annotated_sequence.hh
comparative_modeling / ThreadingJobInputter.ccchemical / ChemicalManager.hh
comparative_modeling / ThreadingJobInputter.ccimport_pose / import_pose.hh
comparative_modeling / ThreadingJobInputter.ccpose / PDBInfo.hh
comparative_modeling / ThreadingJobInputter.ccpose / Pose.hh
comparative_modeling / ThreadingJobInputter.ccsequence / Sequence.hh
comparative_modeling / ThreadingJobInputter.ccio / silent / SilentFileData.hh
comparative_modeling / ThreadingJobInputter.ccsequence / util.hh
comparative_modeling / ThreadingJobInputter.hhpose / Pose.fwd.hh
comparative_modeling / ThreadingJobInputter.hhsequence / SequenceAlignment.fwd.hh
comparative_modeling / ThreadingMover.ccid / AtomID.hh
comparative_modeling / ThreadingMover.ccid / AtomID_Map.hh
comparative_modeling / ThreadingMover.ccid / AtomID_Mask.fwd.hh
comparative_modeling / ThreadingMover.ccchemical / ChemicalManager.fwd.hh
comparative_modeling / ThreadingMover.ccfragment / FragSet.fwd.hh
comparative_modeling / ThreadingMover.cckinematics / MoveMap.fwd.hh
comparative_modeling / ThreadingMover.cckinematics / MoveMap.hh
comparative_modeling / ThreadingMover.ccid / NamedAtomID.hh
comparative_modeling / ThreadingMover.ccpack / optimizeH.hh
comparative_modeling / ThreadingMover.ccpack / pack_missing_sidechains.hh
comparative_modeling / ThreadingMover.ccpose / PDBInfo.hh
comparative_modeling / ThreadingMover.ccpose / Pose.hh
comparative_modeling / ThreadingMover.ccconformation / Residue.functions.hh
comparative_modeling / ThreadingMover.ccconformation / Residue.fwd.hh
comparative_modeling / ThreadingMover.ccchemical / ResidueTypeSet.hh
comparative_modeling / ThreadingMover.ccscoring / ScoreFunction.fwd.hh
comparative_modeling / ThreadingMover.ccscoring / ScoreFunction.hh
comparative_modeling / ThreadingMover.ccscoring / ScoreFunctionFactory.hh
comparative_modeling / ThreadingMover.ccscoring / ScoreType.hh
comparative_modeling / ThreadingMover.ccsequence / ScoringScheme.fwd.hh
comparative_modeling / ThreadingMover.ccsequence / Sequence.hh
comparative_modeling / ThreadingMover.ccsequence / SequenceAlignment.hh
comparative_modeling / ThreadingMover.ccid / SequenceMapping.hh
comparative_modeling / ThreadingMover.ccsequence / SimpleScoringScheme.hh
comparative_modeling / ThreadingMover.ccsequence / SWAligner.hh
comparative_modeling / ThreadingMover.ccutil / SwitchResidueTypeSet.hh
comparative_modeling / ThreadingMover.cctypes.hh
comparative_modeling / ThreadingMover.ccsequence / util.hh
comparative_modeling / ThreadingMover.ccpose / util.hh
comparative_modeling / ThreadingMover.ccpose / util.tmpl.hh
comparative_modeling / ThreadingMover.hhfragment / FragSet.fwd.hh
comparative_modeling / ThreadingMover.hhfragment / FragSet.hh
comparative_modeling / ThreadingMover.hhpose / Pose.hh
comparative_modeling / ThreadingMover.hhsequence / SequenceAlignment.hh
comparative_modeling / ThreadingMover.hhid / SequenceMapping.hh
comparative_modeling / ThreadingMover.hhtypes.hh
toolbox / task_operations / ThreadSequenceOperation.ccpose / Pose.hh
toolbox / task_operations / ThreadSequenceOperation.ccpack / task / operation / TaskOperations.hh
toolbox / task_operations / ThreadSequenceOperation.cctypes.hh
toolbox / task_operations / ThreadSequenceOperation.hhpack / task / PackerTask.fwd.hh
toolbox / task_operations / ThreadSequenceOperation.hhpose / Pose.fwd.hh
toolbox / task_operations / ThreadSequenceOperation.hhtypes.hh
toolbox / task_operations / ThreadSequenceOperationCreator.hhpack / task / operation / TaskOperationCreator.hh
evaluation / TimeEvaluator.ccpose / Pose.fwd.hh
evaluation / TimeEvaluator.hhpose / Pose.fwd.hh
filters / TimeFilter.cctypes.hh
filters / TimeFilter.hhpose / Pose.fwd.hh
filters / TimeFilter.hhtypes.hh
hybridization / TMalign.hhid / AtomID.hh
hybridization / TMalign.hhid / AtomID_Map.hh
hybridization / TMalign.hhpose / PDBInfo.hh
hybridization / TMalign.hhpose / Pose.hh
hybridization / TMalign.hhconformation / Residue.hh
topology_broker / TopologyBroker.ccoptimization / AtomTreeMinimizer.hh
topology_broker / TopologyBroker.ccchemical / ChemicalManager.fwd.hh
topology_broker / TopologyBroker.ccconformation / Conformation.hh
topology_broker / TopologyBroker.ccscoring / constraints / ConstraintSet.hh
topology_broker / TopologyBroker.ccio / raw_data / DisulfideFile.hh
topology_broker / TopologyBroker.ccscoring / dssp / Dssp.hh
topology_broker / TopologyBroker.cckinematics / Exceptions.hh
topology_broker / TopologyBroker.cckinematics / FoldTree.hh
topology_broker / TopologyBroker.ccoptimization / MinimizerOptions.hh
topology_broker / TopologyBroker.cckinematics / MoveMap.hh
topology_broker / TopologyBroker.ccpack / task / PackerTask.hh
topology_broker / TopologyBroker.ccpose / Pose.hh
topology_broker / TopologyBroker.ccscoring / ScoreFunction.hh
topology_broker / TopologyBroker.ccscoring / ScoreFunctionFactory.hh
topology_broker / TopologyBroker.ccid / SequenceMapping.hh
topology_broker / TopologyBroker.cckinematics / ShortestPathInFoldTree.hh
topology_broker / TopologyBroker.ccutil / SwitchResidueTypeSet.hh
topology_broker / TopologyBroker.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
topology_broker / TopologyBroker.ccpack / task / TaskFactory.hh
topology_broker / TopologyBroker.ccpose / symmetry / util.hh
topology_broker / TopologyBroker.ccpose / util.hh
topology_broker / TopologyBroker.ccchemical / VariantType.hh
topology_broker / TopologyBroker.hhkinematics / FoldTree.fwd.hh
topology_broker / TopologyBroker.hhfragment / FragSet.fwd.hh
topology_broker / TopologyBroker.hhkinematics / MoveMap.fwd.hh
topology_broker / TopologyBroker.hhpose / Pose.fwd.hh
topology_broker / TopologyBroker.hhscoring / ScoreFunction.fwd.hh
topology_broker / TopologyBroker.hhkinematics / ShortestPathInFoldTree.fwd.hh
topology_broker / TopologyClaimer.hhfragment / FragSet.hh
topology_broker / TopologyClaimer.hhkinematics / MoveMap.fwd.hh
topology_broker / TopologyClaimer.hhpose / Pose.fwd.hh
topology_broker / TopologyClaimer.hhscoring / ScoreFunction.fwd.hh
topology_broker / TopologyClaimer.hhtypes.hh
frag_picker / TorsionBinIO.cctypes.hh
frag_picker / TorsionBinIO.hhtypes.hh
frag_picker / quota / TorsionBinPool.cctypes.hh
frag_picker / quota / TorsionBinPool.hhfragment / SecondaryStructure.hh
frag_picker / quota / TorsionBinPool.hhtypes.hh
frag_picker / scores / TorsionBinSimilarity.cctypes.hh
frag_picker / scores / TorsionBinSimilarity.hhtypes.hh
simple_moves / TorsionDOFMover.cckinematics / AtomTree.hh
simple_moves / TorsionDOFMover.ccconformation / Conformation.hh
simple_moves / TorsionDOFMover.ccpose / Pose.hh
simple_moves / TorsionDOFMover.ccscoring / ScoreFunction.hh
simple_moves / TorsionDOFMover.ccscoring / ScoreType.hh
simple_moves / TorsionDOFMover.cctypes.hh
simple_moves / TorsionDOFMover.hhid / AtomID.hh
simple_moves / TorsionDOFMover.hhpose / Pose.fwd.hh
simple_moves / TorsionDOFMover.hhscoring / ScoreFunction.fwd.hh
simple_moves / TorsionDOFMover.hhtypes.hh
comparative_modeling / features / TorsionFeature.ccpose / Pose.hh
comparative_modeling / features / TorsionFeature.ccconformation / Residue.hh
comparative_modeling / features / TorsionFeature.cctypes.hh
comparative_modeling / features / TorsionFeature.hhpose / Pose.fwd.hh
comparative_modeling / features / TorsionFeature.hhtypes.hh
protein_interface_design / filters / TorsionFilter.ccpose / PDBInfo.hh
protein_interface_design / filters / TorsionFilter.ccpose / Pose.hh
protein_interface_design / filters / TorsionFilter.ccconformation / Residue.hh
protein_interface_design / filters / TorsionFilter.ccpose / selection.hh
protein_interface_design / filters / TorsionFilter.ccpack / task / TaskFactory.hh
protein_interface_design / filters / TorsionFilter.hhpose / Pose.fwd.hh
protein_interface_design / filters / TorsionFilter.hhpack / task / TaskFactory.fwd.hh
frags / TorsionFragment.ccpose / Pose.hh
frags / TorsionFragment.ccid / TorsionID.hh
frags / TorsionFragment.ccid / types.hh
frags / TorsionFragment.cctypes.hh
frags / TorsionFragment.hhpose / Pose.fwd.hh
frags / TorsionFragment.hhtypes.hh
canonical_sampling / TrajectoryRecorder.ccscoring / Energies.hh
canonical_sampling / TrajectoryRecorder.ccpose / Pose.hh
canonical_sampling / TrajectoryRecorder.ccio / raw_data / ScoreStruct.hh
canonical_sampling / TrajectoryRecorder.hhpose / Pose.fwd.hh
canonical_sampling / TrajectoryRecorder.hhtypes.hh
ligand_docking / Transform.ccconformation / Conformation.hh
ligand_docking / Transform.cckinematics / Jump.hh
ligand_docking / Transform.ccpose / Pose.hh
ligand_docking / Transform.ccchemical / ResidueType.hh
ligand_docking / Transform.ccpose / util.hh
ligand_docking / Transform.hhkinematics / Jump.fwd.hh
ligand_docking / Transform.hhconformation / Residue.fwd.hh
ligand_docking / Translate.ccconformation / Conformation.hh
ligand_docking / Translate.ccpose / Pose.hh
ligand_docking / Translate.ccconformation / Residue.hh
ligand_docking / Translate.cctypes.hh
ligand_docking / Translate.ccpose / util.hh
ligand_docking / Translate.hhgrid / CartGrid.fwd.hh
nonlocal / TreeBuilder.hhpose / Pose.fwd.hh
moves / TrialCounter.hhpose / Pose.fwd.hh
moves / TrialCounter.hhtypes.hh
canonical_sampling / TrialCounterObserver.ccpose / Pose.hh
canonical_sampling / TrialCounterObserver.cctypes.hh
canonical_sampling / TrialCounterObserver.hhid / DOF_ID_Range.hh
canonical_sampling / TrialCounterObserver.hhpose / Pose.fwd.hh
canonical_sampling / TrialCounterObserver.hhid / TorsionID_Range.hh
canonical_sampling / TrialCounterObserver.hhtypes.hh
moves / TrialMover.ccscoring / Energies.hh
moves / TrialMover.ccpose / Pose.hh
moves / TrialMover.ccscoring / ScoreFunction.hh
moves / TrialMover.hhpose / Pose.fwd.hh
moves / TrialMover.hhscoring / ScoreType.hh
moves / TrialMover.hhtypes.hh
viewer / triangleIterator.ccscoring / electron_density / ElectronDensity.hh
protein_interface_design / movers / TryRotamers.cckinematics / FoldTree.hh
protein_interface_design / movers / TryRotamers.ccgraph / Graph.hh
protein_interface_design / movers / TryRotamers.cckinematics / Jump.hh
protein_interface_design / movers / TryRotamers.ccpack / task / PackerTask.hh
protein_interface_design / movers / TryRotamers.ccpose / Pose.hh
protein_interface_design / movers / TryRotamers.ccpack / rotamer_set / RotamerSetFactory.hh
protein_interface_design / movers / TryRotamers.ccpose / selection.hh
protein_interface_design / movers / TryRotamers.ccpack / task / TaskFactory.hh
protein_interface_design / movers / TryRotamers.ccpose / util.hh
protein_interface_design / movers / TryRotamers.hhpose / Pose.fwd.hh
protein_interface_design / movers / TryRotamers.hhpack / rotamer_set / RotamerSet.hh
protein_interface_design / movers / TryRotamers.hhscoring / ScoreFunction.hh
protein_interface_design / movers / TryRotamers.hhtypes.hh
dna / typedefs.hhchemical / ResidueType.fwd.hh
dna / typedefs.hhtypes.hh
docking / types.hhtypes.hh
antibody / Ubiquitin_E2C_Modeler.ccpose / datacache / CacheableDataType.hh
antibody / Ubiquitin_E2C_Modeler.ccchemical / ChemicalManager.fwd.hh
antibody / Ubiquitin_E2C_Modeler.ccconformation / Conformation.hh
antibody / Ubiquitin_E2C_Modeler.ccscoring / Energies.hh
antibody / Ubiquitin_E2C_Modeler.cckinematics / FoldTree.hh
antibody / Ubiquitin_E2C_Modeler.cckinematics / MoveMap.hh
antibody / Ubiquitin_E2C_Modeler.ccpack / task / operation / NoRepackDisulfides.hh
antibody / Ubiquitin_E2C_Modeler.ccpack / task / operation / OperateOnCertainResidues.hh
antibody / Ubiquitin_E2C_Modeler.ccpack / task / PackerTask.hh
antibody / Ubiquitin_E2C_Modeler.ccpose / PDBInfo.hh
antibody / Ubiquitin_E2C_Modeler.ccpose / Pose.hh
antibody / Ubiquitin_E2C_Modeler.ccpack / task / operation / ResFilters.hh
antibody / Ubiquitin_E2C_Modeler.ccconformation / Residue.hh
antibody / Ubiquitin_E2C_Modeler.ccpack / task / operation / ResLvlTaskOperations.hh
antibody / Ubiquitin_E2C_Modeler.ccscoring / rms_util.tmpl.hh
antibody / Ubiquitin_E2C_Modeler.ccpack / dunbrack / RotamerConstraint.hh
antibody / Ubiquitin_E2C_Modeler.ccscoring / ScoreFunction.hh
antibody / Ubiquitin_E2C_Modeler.ccscoring / ScoreFunctionFactory.hh
antibody / Ubiquitin_E2C_Modeler.ccpack / task / TaskFactory.hh
antibody / Ubiquitin_E2C_Modeler.ccpack / task / operation / TaskOperations.hh
antibody / Ubiquitin_E2C_Modeler.ccpack / rotamer_set / UnboundRotamersOperation.hh
antibody / Ubiquitin_E2C_Modeler.ccconformation / util.hh
antibody / Ubiquitin_E2C_Modeler.hhkinematics / MoveMap.fwd.hh
antibody / Ubiquitin_E2C_Modeler.hhpose / Pose.fwd.hh
antibody / Ubiquitin_E2C_Modeler.hhscoring / ScoreFunction.fwd.hh
antibody / Ubiquitin_E2C_Modeler.hhpack / task / TaskFactory.fwd.hh
antibody / Ubiquitin_E2C_Modeler.hhtypes.hh
ligand_docking / UnconstrainedTorsionsMover.hhpose / Pose.fwd.hh
unfolded_state_energy_calculator / UnfoldedStateEnergyCalculatorJobDistributor.ccscoring / ScoreType.hh
unfolded_state_energy_calculator / UnfoldedStateEnergyCalculatorJobDistributor.hhscoring / EnergyMap.hh
unfolded_state_energy_calculator / UnfoldedStateEnergyCalculatorJobDistributor.hhtypes.hh
unfolded_state_energy_calculator / UnfoldedStateEnergyCalculatorMover.ccchemical / ChemicalManager.hh
unfolded_state_energy_calculator / UnfoldedStateEnergyCalculatorMover.ccscoring / Energies.hh
unfolded_state_energy_calculator / UnfoldedStateEnergyCalculatorMover.ccpack / pack_rotamers.hh
unfolded_state_energy_calculator / UnfoldedStateEnergyCalculatorMover.ccpack / task / PackerTask.hh
unfolded_state_energy_calculator / UnfoldedStateEnergyCalculatorMover.ccpose / Pose.hh
unfolded_state_energy_calculator / UnfoldedStateEnergyCalculatorMover.ccconformation / Residue.hh
unfolded_state_energy_calculator / UnfoldedStateEnergyCalculatorMover.ccconformation / ResidueFactory.hh
unfolded_state_energy_calculator / UnfoldedStateEnergyCalculatorMover.ccchemical / ResidueType.hh
unfolded_state_energy_calculator / UnfoldedStateEnergyCalculatorMover.ccchemical / ResidueTypeSet.hh
unfolded_state_energy_calculator / UnfoldedStateEnergyCalculatorMover.ccscoring / ScoreFunction.hh
unfolded_state_energy_calculator / UnfoldedStateEnergyCalculatorMover.ccpack / task / TaskFactory.hh
unfolded_state_energy_calculator / UnfoldedStateEnergyCalculatorMover.cctypes.hh
unfolded_state_energy_calculator / UnfoldedStateEnergyCalculatorMover.hhpose / Pose.fwd.hh
unfolded_state_energy_calculator / UnfoldedStateEnergyCalculatorMover.hhscoring / ScoreFunction.fwd.hh
unfolded_state_energy_calculator / UnfoldedStateEnergyCalculatorMover.hhtypes.hh
unfolded_state_energy_calculator / UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor.ccscoring / ScoreType.hh
unfolded_state_energy_calculator / UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor.hhscoring / EnergyMap.hh
unfolded_state_energy_calculator / UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor.hhtypes.hh
unfolded_state_energy_calculator / UnfoldedStateEnergyCalculatorUtil.ccscoring / EnergyMap.hh
unfolded_state_energy_calculator / UnfoldedStateEnergyCalculatorUtil.ccscoring / ScoreType.hh
unfolded_state_energy_calculator / UnfoldedStateEnergyCalculatorUtil.hhscoring / EnergyMap.fwd.hh
unfolded_state_energy_calculator / UnfoldedStateEnergyCalculatorUtil.hhtypes.hh
nonlocal / UniformPolicy.ccfragment / FragSet.hh
nonlocal / UniformPolicy.ccfragment / Frame.hh
nonlocal / UniformPolicy.ccpose / Pose.fwd.hh
nonlocal / UniformPolicy.cctypes.hh
nonlocal / UniformPolicy.hhfragment / FragSet.fwd.hh
nonlocal / UniformPolicy.hhfragment / Frame.fwd.hh
nonlocal / UniformPolicy.hhpose / Pose.fwd.hh
nonlocal / UniformPolicy.hhtypes.hh
features / UnrecognizedAtomFeatures.ccio / pdb / file_data.hh
features / UnrecognizedAtomFeatures.ccpose / PDBInfo.hh
features / UnrecognizedAtomFeatures.ccpose / Pose.hh
features / UnrecognizedAtomFeatures.ccconformation / Residue.hh
features / UnrecognizedAtomFeatures.cctypes.hh
features / UnrecognizedAtomFeatures.hhpose / Pose.fwd.hh
features / UnrecognizedAtomFeatures.hhtypes.hh
features / UnrecognizedAtomFeaturesCreator.hhtypes.hh
match / upstream / UpstreamBuilder.hhconformation / Residue.fwd.hh
match / upstream / UpstreamBuilder.hhchemical / ResidueType.fwd.hh
match / output / UpstreamCollisionFilter.ccscoring / methods / EnergyMethodOptions.hh
match / output / UpstreamCollisionFilter.ccscoring / etable / EtableEnergy.hh
match / output / UpstreamCollisionFilter.ccpose / Pose.hh
match / output / UpstreamCollisionFilter.ccconformation / Residue.hh
match / output / UpstreamCollisionFilter.ccscoring / ScoreFunction.hh
match / output / UpstreamCollisionFilter.ccscoring / ScoringManager.hh
match / output / UpstreamCollisionFilter.hhpose / Pose.fwd.hh
match / output / UpstreamCollisionFilter.hhconformation / Residue.hh
match / output / UpstreamCollisionFilter.hhscoring / ScoreFunction.fwd.hh
match / output / UpstreamCollisionFilter.hhscoring / methods / ShortRangeTwoBodyEnergy.fwd.hh
match / output / UpstreamDownstreamCollisionFilter.ccid / AtomID.hh
match / output / UpstreamDownstreamCollisionFilter.ccpose / Pose.hh
match / output / UpstreamDownstreamCollisionFilter.ccconformation / Residue.hh
match / output / UpstreamDownstreamCollisionFilter.ccscoring / ScoreFunction.hh
match / output / UpstreamDownstreamCollisionFilter.ccscoring / methods / ShortRangeTwoBodyEnergy.hh
match / output / UpstreamDownstreamCollisionFilter.hhpose / Pose.hh
match / output / UpstreamDownstreamCollisionFilter.hhconformation / Residue.hh
match / output / UpstreamDownstreamCollisionFilter.hhscoring / ScoreFunction.fwd.hh
match / output / UpstreamDownstreamCollisionFilter.hhscoring / methods / ShortRangeTwoBodyEnergy.fwd.hh
match / output / UpstreamHitCacher.ccconformation / Residue.hh
match / upstream / UpstreamResTypeGeometry.ccchemical / Atom.hh
match / upstream / UpstreamResTypeGeometry.ccchemical / ResidueType.hh
match / upstream / UpstreamResTypeGeometry.hhchemical / ResidueType.fwd.hh
match / upstream / UpstreamResTypeGeometry.hhtypes.hh
forge / methods / util.ccchemical / AA.hh
comparative_modeling / util.ccsequence / Aligner.hh
comparative_modeling / util.ccsequence / AlignerFactory.hh
rbsegment_relax / util.ccscoring / constraints / AmbiguousConstraint.hh
protein_interface_design / util.ccscoring / constraints / AmbiguousConstraint.hh
dna / util.ccscoring / constraints / AngleConstraint.hh
dna / util.ccconformation / Atom.hh
loops / util.ccid / AtomID.hh
electron_density / util.ccid / AtomID.hh
fldsgn / topology / util.ccid / AtomID_Map.hh
loops / util.ccid / AtomID_Map.hh
forge / methods / util.ccscoring / constraints / AtomPairConstraint.hh
hybridization / util.ccscoring / constraints / AtomPairConstraint.hh
dna / util.ccscoring / constraints / AtomPairConstraint.hh
protein_interface_design / util.ccchemical / AtomType.hh
dna / util.ccscoring / dna / base_geometry.hh
jumping / util.ccfragment / BBTorsionSRFD.hh
rbsegment_relax / util.ccscoring / constraints / BoundConstraint.hh
relax / util.ccpose / datacache / CacheableDataType.hh
docking / util.ccpose / datacache / CacheableDataType.hh
topology_broker / util.ccchemical / ChemicalManager.fwd.hh
comparative_modeling / util.ccchemical / ChemicalManager.fwd.hh
star / util.ccchemical / ChemicalManager.hh
rbsegment_relax / util.ccchemical / ChemicalManager.hh
medal / util.ccchemical / ChemicalManager.hh
jd2 / util.ccchemical / ChemicalManager.hh
grafting / util.ccchemical / ChemicalManager.hh
rosetta_scripts / util.ccconformation / Conformation.hh
protein_interface_design / util.ccconformation / Conformation.hh
forge / methods / util.ccconformation / Conformation.hh
grafting / util.ccconformation / Conformation.hh
docking / util.ccconformation / Conformation.hh
hybridization / util.ccfragment / ConstantLengthFragSet.hh
rbsegment_relax / util.ccscoring / constraints / Constraint.hh
hybridization / util.ccscoring / constraints / Constraint.hh
hybridization / util.ccscoring / constraints / ConstraintIO.hh
dna / util.ccscoring / constraints / ConstraintIO.hh
rbsegment_relax / util.ccscoring / constraints / ConstraintSet.fwd.hh
rbsegment_relax / util.ccscoring / constraints / ConstraintSet.hh
protein_interface_design / util.ccscoring / constraints / ConstraintSet.hh
forge / methods / util.ccscoring / constraints / ConstraintSet.hh
hybridization / util.ccscoring / constraints / ConstraintSet.hh
dna / util.ccscoring / constraints / ConstraintSet.hh
rbsegment_relax / util.ccscoring / constraints / CoordinateConstraint.hh
protein_interface_design / util.ccscoring / constraints / CoordinateConstraint.hh
forge / methods / util.ccscoring / constraints / CoordinateConstraint.hh
loops / util.ccscoring / constraints / CoordinateConstraint.hh
forge / methods / util.ccgraph / DisjointSets.hh
fldsgn / topology / util.ccscoring / dssp / Dssp.hh
rbsegment_relax / util.ccscoring / dssp / Dssp.hh
protein_interface_design / util.ccscoring / dssp / Dssp.hh
jumping / util.ccscoring / dssp / Dssp.hh
hybridization / util.ccscoring / dssp / Dssp.hh
electron_density / util.ccscoring / dssp / Dssp.hh
hybridization / util.cckinematics / Edge.hh
electron_density / util.ccscoring / electron_density / ElectronDensity.hh
fldsgn / topology / util.ccscoring / Energies.hh
protein_interface_design / util.ccscoring / Energies.hh
nonlocal / util.ccscoring / Energies.hh
fldsgn / topology / util.ccscoring / EnergiesCacheableDataType.hh
nonlocal / util.ccscoring / EnergyMap.hh
star / util.cckinematics / FoldTree.hh
fldsgn / potentials / sspot / util.cckinematics / FoldTree.hh
rbsegment_relax / util.cckinematics / FoldTree.hh
protein_interface_design / util.cckinematics / FoldTree.hh
forge / methods / util.cckinematics / FoldTree.hh
medal / util.cckinematics / FoldTree.hh
loops / util.cckinematics / FoldTree.hh
jumping / util.cckinematics / FoldTree.hh
hybridization / util.cckinematics / FoldTree.hh
grafting / util.cckinematics / FoldTree.hh
electron_density / util.cckinematics / FoldTree.hh
docking / util.cckinematics / FoldTree.hh
comparative_modeling / util.cckinematics / FoldTree.hh
topology_broker / util.ccfragment / FragmentIO.hh
topology_broker / util.ccfragment / FragSet.hh
loops / util.ccfragment / FragSet.hh
hybridization / util.ccfragment / FragSet.hh
loops / util.ccfragment / Frame.hh
jumping / util.ccfragment / Frame.hh
hybridization / util.ccfragment / Frame.hh
loops / util.ccfragment / FrameList.hh
dna / util.ccgraph / Graph.hh
loops / util.ccscoring / constraints / HarmonicFunc.hh
dna / util.ccscoring / constraints / HarmonicFunc.hh
fldsgn / topology / util.ccscoring / hbonds / HBondSet.hh
topology_broker / util.ccimport_pose / import_pose.hh
jd2 / util.ccimport_pose / import_pose.hh
evaluation / util.ccimport_pose / import_pose.hh
dna / util.ccimport_pose / import_pose.hh
comparative_modeling / util.ccimport_pose / import_pose.hh
hybridization / util.ccfragment / IndependentBBTorsionSRFD.hh
fldsgn / potentials / sspot / util.cckinematics / Jump.hh
hybridization / util.cckinematics / Jump.hh
electron_density / util.cckinematics / Jump.hh
jumping / util.ccfragment / JumpingFrame.hh
jumping / util.ccfragment / JumpSRFD.hh
relax / util.ccscoring / MembraneTopology.hh
rosetta_scripts / util.cckinematics / MoveMap.hh
relax / util.cckinematics / MoveMap.hh
rbsegment_relax / util.cckinematics / MoveMap.hh
forge / methods / util.cckinematics / MoveMap.hh
loops / util.cckinematics / MoveMap.hh
jumping / util.cckinematics / MoveMap.hh
elscripts / util.cckinematics / MoveMap.hh
electron_density / util.cckinematics / MoveMap.hh
nonlocal / util.ccid / NamedAtomID.hh
noesy_assign / util.ccid / NamedAtomID.hh
comparative_modeling / util.ccid / NamedAtomID.hh
forge / methods / util.ccpack / task / operation / NoRepackDisulfides.hh
rosetta_scripts / util.ccpack / task / PackerTask.hh
multistate_design / util.ccpack / task / PackerTask.hh
forge / methods / util.ccpack / task / PackerTask.hh
hybridization / util.ccpack / task / PackerTask.hh
dna / util.ccpack / task / PackerTask.hh
rosetta_scripts / util.ccpose / PDBInfo.hh
forge / methods / util.ccpose / PDBInfo.hh
loops / util.ccpose / PDBInfo.hh
hybridization / util.ccpose / PDBInfo.hh
docking / util.ccpose / PDBInfo.hh
dna / util.ccpose / PDBInfo.hh
rosetta_scripts / util.ccpose / PDBPoseMap.hh
forge / methods / util.ccpose / PDBPoseMap.hh
fldsgn / topology / util.ccpose / Pose.hh
star / util.ccpose / Pose.hh
fldsgn / potentials / sspot / util.ccpose / Pose.hh
rosetta_scripts / util.ccpose / Pose.hh
relax / util.ccpose / Pose.hh
rbsegment_relax / util.ccpose / Pose.hh
protein_interface_design / util.ccpose / Pose.hh
nonlocal / util.ccpose / Pose.hh
forge / methods / util.ccpose / Pose.hh
medal / util.ccpose / Pose.hh
loops / loops_definers / util.ccpose / Pose.hh
loops / util.ccpose / Pose.hh
jumping / util.ccpose / Pose.hh
jd2 / util.ccpose / Pose.hh
hybridization / util.ccpose / Pose.hh
grafting / util.ccpose / Pose.hh
evaluation / util.ccpose / Pose.hh
electron_density / util.ccpose / Pose.hh
docking / util.ccpose / Pose.hh
dna / util.ccpose / Pose.hh
comparative_modeling / util.ccpose / Pose.hh
nonlocal / util.ccio / pdb / pose_io.hh
forge / methods / util.ccpack / task / ResfileReader.hh
fldsgn / potentials / sspot / util.ccconformation / Residue.hh
relax / util.ccconformation / Residue.hh
rbsegment_relax / util.ccconformation / Residue.hh
nonlocal / util.ccconformation / Residue.hh
forge / methods / util.ccconformation / Residue.hh
loops / util.ccconformation / Residue.hh
hybridization / util.ccconformation / Residue.hh
grafting / util.ccconformation / Residue.hh
evaluation / util.ccconformation / Residue.hh
electron_density / util.ccconformation / Residue.hh
dna / util.ccconformation / Residue.hh
comparative_modeling / util.ccconformation / Residue.hh
rbsegment_relax / util.ccconformation / ResidueFactory.hh
loops / util.ccconformation / ResidueFactory.hh
dna / util.ccconformation / ResidueFactory.hh
nonlocal / util.ccchemical / ResidueType.hh
multistate_design / util.ccchemical / ResidueType.hh
loops / util.ccchemical / ResidueType.hh
jumping / util.ccchemical / ResidueType.hh
hybridization / util.ccchemical / ResidueType.hh
grafting / util.ccchemical / ResidueType.hh
evaluation / util.ccchemical / ResidueType.hh
rbsegment_relax / util.ccchemical / ResidueTypeSet.hh
loops / util.ccchemical / ResidueTypeSet.hh
comparative_modeling / util.ccchemical / ResidueTypeSet.hh
loops / util.ccscoring / rms_util.hh
hybridization / util.ccscoring / rms_util.hh
dna / util.ccpack / rotamer_set / RotamerSet.hh
dna / util.ccpack / rotamer_set / RotamerSetFactory.hh
dna / util.ccpack / rotamer_set / RotamerSets.hh
fldsgn / topology / util.ccscoring / sasa.hh
hybridization / util.ccscoring / constraints / ScalarWeightedFunc.hh
rosetta_scripts / util.ccscoring / ScoreFunction.hh
relax / util.ccscoring / ScoreFunction.hh
protein_interface_design / util.ccscoring / ScoreFunction.hh
loops / util.ccscoring / ScoreFunction.hh
evaluation / util.ccscoring / ScoreFunction.hh
elscripts / util.ccscoring / ScoreFunction.hh
electron_density / util.ccscoring / ScoreFunction.hh
dna / util.ccscoring / ScoreFunction.hh
comparative_modeling / util.ccscoring / ScoreFunction.hh
relax / util.ccscoring / ScoreFunctionFactory.hh
protein_interface_design / util.ccscoring / ScoreFunctionFactory.hh
loops / util.ccscoring / ScoreFunctionFactory.hh
evaluation / util.ccscoring / ScoreFunctionFactory.hh
electron_density / util.ccscoring / ScoreFunctionFactory.hh
dna / util.ccscoring / ScoreFunctionFactory.hh
protein_interface_design / util.ccscoring / ScoreType.hh
comparative_modeling / util.ccscoring / ScoreType.hh
comparative_modeling / util.ccsequence / ScoringScheme.fwd.hh
comparative_modeling / util.ccsequence / ScoringScheme.hh
comparative_modeling / util.ccsequence / ScoringSchemeFactory.hh
topology_broker / util.ccfragment / SecondaryStructure.hh
loops / util.ccfragment / SecondaryStructure.hh
evaluation / util.ccfragment / SecondaryStructure.hh
loops / util.ccpose / selection.hh
comparative_modeling / util.ccsequence / Sequence.fwd.hh
topology_broker / util.ccsequence / Sequence.hh
nonlocal / util.ccsequence / Sequence.hh
hybridization / util.ccsequence / Sequence.hh
comparative_modeling / util.ccsequence / Sequence.hh
evaluation / util.ccsequence / SequenceAlignment.fwd.hh
nonlocal / util.ccsequence / SequenceAlignment.hh
medal / util.ccsequence / SequenceAlignment.hh
evaluation / util.ccsequence / SequenceAlignment.hh
rbsegment_relax / util.ccid / SequenceMapping.hh
nonlocal / util.ccid / SequenceMapping.hh
medal / util.ccid / SequenceMapping.hh
comparative_modeling / util.ccid / SequenceMapping.hh
comparative_modeling / util.ccsequence / SequenceProfile.hh
evaluation / util.ccio / silent / silent.fwd.hh
star / util.ccio / silent / SilentFileData.hh
jd2 / util.ccio / silent / SilentFileData.hh
evaluation / util.ccimport_pose / pose_stream / SilentFilePoseInputStream.hh
star / util.ccio / silent / SilentStruct.hh
jd2 / util.ccio / silent / SilentStruct.hh
evaluation / util.ccio / silent / SilentStruct.hh
star / util.ccio / silent / SilentStructFactory.hh
jd2 / util.ccio / silent / SilentStructFactory.hh
evaluation / util.ccio / silent / SilentStructFactory.hh
hybridization / util.ccscoring / constraints / SOGFunc.hh
fldsgn / topology / util.ccscoring / dssp / StrandPairing.hh
star / util.ccutil / SwitchResidueTypeSet.hh
medal / util.ccutil / SwitchResidueTypeSet.hh
comparative_modeling / util.ccutil / SwitchResidueTypeSet.hh
hybridization / util.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
jumping / util.ccconformation / symmetry / SymDof.hh
hybridization / util.ccconformation / symmetry / SymmetricConformation.hh
comparative_modeling / util.ccconformation / symmetry / SymmetricConformation.hh
electron_density / util.ccscoring / symmetry / SymmetricScoreFunction.hh
jumping / util.ccconformation / symmetry / SymmetryInfo.hh
hybridization / util.ccconformation / symmetry / SymmetryInfo.hh
comparative_modeling / util.ccconformation / symmetry / SymmetryInfo.hh
rosetta_scripts / util.ccpack / task / TaskFactory.hh
forge / methods / util.ccpack / task / TaskFactory.hh
elscripts / util.ccpack / task / TaskFactory.hh
dna / util.ccpack / task / TaskFactory.hh
rosetta_scripts / util.ccpack / task / operation / TaskOperation.hh
forge / methods / util.ccpack / task / operation / TaskOperations.hh
star / util.cctypes.hh
rosetta_scripts / util.ccid / types.hh
rosetta_scripts / util.cctypes.hh
protein_interface_design / util.cctypes.hh
nonlocal / util.cctypes.hh
forge / methods / util.cctypes.hh
forge / methods / util.ccid / types.hh
medal / util.cctypes.hh
hybridization / util.cctypes.hh
features / util.cctypes.hh
docking / util.cctypes.hh
comparative_modeling / util.cctypes.hh
topology_broker / util.ccsequence / util.hh
topology_broker / util.ccfragment / util.hh
fldsgn / topology / util.ccpose / util.hh
sic_dock / util.ccpose / util.hh
relax / util.ccscoring / electron_density / util.hh
relax / util.ccscoring / constraints / util.hh
rbsegment_relax / util.ccpose / util.hh
forge / methods / util.ccpose / util.hh
loops / util.ccpose / util.hh
loops / util.ccconformation / util.hh
jumping / util.ccconformation / symmetry / util.hh
jumping / util.ccpose / symmetry / util.hh
jumping / util.ccconformation / util.hh
jumping / util.cckinematics / util.hh
hybridization / util.ccsequence / util.hh
hybridization / util.ccpose / symmetry / util.hh
hybridization / util.ccfragment / picking_old / vall / util.hh
hybridization / util.ccscoring / constraints / util.hh
hybridization / util.ccpose / util.hh
grafting / util.cckinematics / util.hh
grafting / util.ccpose / util.hh
evaluation / util.ccsequence / util.hh
evaluation / util.ccchemical / util.hh
evaluation / util.ccscoring / constraints / util.hh
electron_density / util.ccpose / symmetry / util.hh
electron_density / util.ccscoring / electron_density / util.hh
comparative_modeling / util.ccsequence / util.hh
comparative_modeling / util.ccpose / symmetry / util.hh
comparative_modeling / util.ccchemical / util.hh
comparative_modeling / util.ccpose / util.hh
fldsgn / topology / util.ccpose / util.tmpl.hh
loops / util.ccpose / util.tmpl.hh
rbsegment_relax / util.ccchemical / VariantType.hh
forge / methods / util.ccchemical / VariantType.hh
grafting / util.ccchemical / VariantType.hh
dna / util.ccchemical / VariantType.hh
dna / util.hhchemical / AA.hh
dna / util.hhconformation / Atom.fwd.hh
hybridization / util.hhid / AtomID.hh
sic_dock / util.hhid / AtomID_Map.hh
hybridization / util.hhid / AtomID_Map.hh
comparative_modeling / util.hhid / AtomID_Mask.fwd.hh
protein_interface_design / util.hhscoring / constraints / Constraint.fwd.hh
forge / methods / util.hhgraph / DisjointSets.fwd.hh
hybridization / util.hhkinematics / Edge.hh
protein_interface_design / util.hhkinematics / FoldTree.fwd.hh
forge / methods / util.hhkinematics / FoldTree.fwd.hh
medal / util.hhkinematics / FoldTree.fwd.hh
jumping / util.hhkinematics / FoldTree.hh
hybridization / util.hhkinematics / FoldTree.hh
dna / util.hhkinematics / FoldTree.hh
loops / util.hhfragment / FragSet.fwd.hh
hybridization / util.hhfragment / FragSet.fwd.hh
fldsgn / topology / util.hhscoring / hbonds / HBondSet.fwd.hh
hybridization / util.hhkinematics / Jump.hh
jumping / util.hhfragment / JumpingFrame.fwd.hh
rosetta_scripts / util.hhkinematics / MoveMap.fwd.hh
rbsegment_relax / util.hhkinematics / MoveMap.fwd.hh
elscripts / util.hhkinematics / MoveMap.fwd.hh
relax / util.hhkinematics / MoveMap.hh
noesy_assign / util.hhid / NamedAtomID.fwd.hh
comparative_modeling / util.hhid / NamedAtomID.fwd.hh
multistate_design / util.hhpack / task / PackerTask.fwd.hh
forge / methods / util.hhpack / task / PackerTask.fwd.hh
dna / util.hhpack / task / PackerTask.fwd.hh
fldsgn / topology / util.hhpose / Pose.fwd.hh
star / util.hhpose / Pose.fwd.hh
fldsgn / potentials / sspot / util.hhpose / Pose.fwd.hh
sic_dock / util.hhpose / Pose.fwd.hh
rosetta_scripts / util.hhpose / Pose.fwd.hh
relax / util.hhpose / Pose.fwd.hh
rbsegment_relax / util.hhpose / Pose.fwd.hh
protein_interface_design / util.hhpose / Pose.fwd.hh
nonlocal / util.hhpose / Pose.fwd.hh
forge / methods / util.hhpose / Pose.fwd.hh
medal / util.hhpose / Pose.fwd.hh
loops / loops_definers / util.hhpose / Pose.fwd.hh
loops / util.hhpose / Pose.fwd.hh
jumping / util.hhpose / Pose.fwd.hh
jd2 / util.hhpose / Pose.fwd.hh
evaluation / util.hhpose / Pose.fwd.hh
electron_density / util.hhpose / Pose.fwd.hh
docking / util.hhpose / Pose.fwd.hh
dna / util.hhpose / Pose.fwd.hh
comparative_modeling / util.hhpose / Pose.fwd.hh
hybridization / util.hhpose / Pose.hh
grafting / util.hhpose / Pose.hh
dna / util.hhconformation / Residue.fwd.hh
hybridization / util.hhconformation / Residue.hh
hybridization / util.hhchemical / ResidueType.hh
dna / util.hhchemical / ResidueType.hh
evaluation / util.hhscoring / rms_util.hh
dna / util.hhpack / rotamer_set / RotamerSets.fwd.hh
rosetta_scripts / util.hhscoring / ScoreFunction.fwd.hh
relax / util.hhscoring / ScoreFunction.fwd.hh
loops / util.hhscoring / ScoreFunction.fwd.hh
elscripts / util.hhscoring / ScoreFunction.fwd.hh
nonlocal / util.hhscoring / ScoreType.hh
loops / util.hhfragment / SecondaryStructure.fwd.hh
evaluation / util.hhfragment / SecondaryStructure.fwd.hh
nonlocal / util.hhsequence / SequenceAlignment.fwd.hh
medal / util.hhsequence / SequenceAlignment.fwd.hh
comparative_modeling / util.hhsequence / SequenceAlignment.fwd.hh
hybridization / util.hhsequence / SequenceAlignment.hh
rbsegment_relax / util.hhid / SequenceMapping.fwd.hh
jd2 / util.hhio / silent / SilentStruct.fwd.hh
sic_dock / util.hhkinematics / Stub.hh
rosetta_scripts / util.hhpack / task / TaskFactory.fwd.hh
forge / methods / util.hhpack / task / TaskFactory.fwd.hh
elscripts / util.hhpack / task / TaskFactory.fwd.hh
rosetta_scripts / util.hhpack / task / operation / TaskOperation.fwd.hh
elscripts / util.hhpack / task / operation / TaskOperation.hh
fldsgn / topology / util.hhtypes.hh
fldsgn / potentials / sspot / util.hhtypes.hh
sic_dock / util.hhtypes.hh
rosetta_scripts / util.hhtypes.hh
rbsegment_relax / util.hhtypes.hh
protein_interface_design / util.hhtypes.hh
nonlocal / util.hhtypes.hh
noesy_assign / util.hhtypes.hh
multistate_design / util.hhtypes.hh
moves / util.hhtypes.hh
forge / methods / util.hhtypes.hh
medal / util.hhtypes.hh
loops / util.hhtypes.hh
jumping / util.hhtypes.hh
jd2 / util.hhtypes.hh
hybridization / util.hhtypes.hh
features / util.hhtypes.hh
electron_density / util.hhtypes.hh
dna / util.hhtypes.hh
comparative_modeling / util.hhtypes.hh
toolbox / match_enzdes_util / util_functions.ccscoring / constraints / AmbiguousConstraint.hh
toolbox / match_enzdes_util / util_functions.cckinematics / tree / Atom.hh
toolbox / match_enzdes_util / util_functions.ccid / AtomID.hh
toolbox / match_enzdes_util / util_functions.cckinematics / AtomTree.hh
toolbox / match_enzdes_util / util_functions.ccscoring / constraints / BackboneStubConstraint.hh
toolbox / match_enzdes_util / util_functions.ccscoring / constraints / BoundConstraint.hh
toolbox / match_enzdes_util / util_functions.ccscoring / constraints / CoordinateConstraint.hh
toolbox / match_enzdes_util / util_functions.ccscoring / constraints / MultiConstraint.hh
toolbox / match_enzdes_util / util_functions.ccpose / Pose.hh
toolbox / match_enzdes_util / util_functions.ccconformation / Residue.hh
toolbox / match_enzdes_util / util_functions.cctypes.hh
toolbox / match_enzdes_util / util_functions.hhscoring / constraints / AmbiguousConstraint.fwd.hh
toolbox / match_enzdes_util / util_functions.hhid / AtomID.fwd.hh
toolbox / match_enzdes_util / util_functions.hhscoring / constraints / Func.fwd.hh
toolbox / match_enzdes_util / util_functions.hhpose / Pose.fwd.hh
toolbox / match_enzdes_util / util_functions.hhconformation / Residue.fwd.hh
toolbox / match_enzdes_util / util_functions.hhtypes.hh
flxbb / utility.ccscoring / constraints / AngleConstraint.hh
flxbb / utility.ccscoring / constraints / AtomPairConstraint.hh
flxbb / utility.ccscoring / constraints / BoundConstraint.hh
flxbb / utility.ccscoring / constraints / Constraint.hh
flxbb / utility.ccscoring / constraints / DihedralConstraint.hh
flxbb / utility.ccscoring / dssp / Dssp.hh
flxbb / utility.ccpose / Pose.hh
flxbb / utility.ccconformation / Residue.hh
flxbb / utility.ccscoring / constraints / ScalarWeightedFunc.hh
flxbb / utility.ccscoring / SS_Info.hh
flxbb / utility.hhscoring / constraints / Constraint.fwd.hh
flxbb / utility.hhpose / Pose.fwd.hh
flxbb / utility.hhtypes.hh
frag_picker / VallChunk.ccpose / Pose.hh
frag_picker / VallChunk.ccsequence / SequenceProfile.hh
frag_picker / VallChunk.hhpose / Pose.fwd.hh
frag_picker / VallChunk.hhsequence / SequenceProfile.fwd.hh
frags / VallData.hhtypes.hh
frag_picker / VallProvider.ccpose / annotated_sequence.hh
frag_picker / VallProvider.ccchemical / ChemicalManager.hh
frag_picker / VallProvider.ccpose / Pose.hh
frag_picker / VallProvider.ccsequence / SequenceProfile.hh
frag_picker / VallProvider.cctypes.hh
frag_picker / VallProvider.hhpose / Pose.hh
frag_picker / VallProvider.hhsequence / SequenceProfile.hh
frag_picker / VallProvider.hhtypes.hh
frag_picker / VallResidue.ccchemical / AA.hh
frag_picker / VallResidue.ccfragment / BBTorsionSRFD.hh
frag_picker / VallResidue.hhchemical / AA.hh
frag_picker / VallResidue.hhfragment / BBTorsionSRFD.fwd.hh
frag_picker / VallResidue.hhtypes.hh
jd2 / archive / VarianceStatisticsArchive.ccio / silent / SilentStruct.hh
jd2 / archive / VarianceStatisticsArchive.hhpose / Pose.fwd.hh
jd2 / archive / VarianceStatisticsArchive.hhtypes.hh
forge / components / VarLengthBuild.ccpose / datacache / CacheableObserverType.hh
forge / components / VarLengthBuild.ccfragment / ConstantLengthFragSet.hh
forge / components / VarLengthBuild.ccscoring / Energies.hh
forge / components / VarLengthBuild.ccfragment / picking_old / FragmentLibraryManager.hh
forge / components / VarLengthBuild.ccfragment / Frame.hh
forge / components / VarLengthBuild.ccfragment / FrameIterator.hh
forge / components / VarLengthBuild.ccfragment / FrameIteratorWorker_.hh
forge / components / VarLengthBuild.ccfragment / IndependentBBTorsionSRFD.hh
forge / components / VarLengthBuild.cckinematics / MoveMap.hh
forge / components / VarLengthBuild.ccpose / datacache / ObserverCache.hh
forge / components / VarLengthBuild.ccfragment / OrderedFragSet.hh
forge / components / VarLengthBuild.ccpose / Pose.hh
forge / components / VarLengthBuild.ccchemical / ResidueTypeSet.hh
forge / components / VarLengthBuild.ccscoring / ScoreFunction.hh
forge / components / VarLengthBuild.ccscoring / ScoreFunctionFactory.hh
forge / components / VarLengthBuild.ccid / SequenceMapping.hh
forge / components / VarLengthBuild.ccutil / SwitchResidueTypeSet.hh
forge / components / VarLengthBuild.ccfragment / picking_old / vall / util.hh
forge / components / VarLengthBuild.ccpose / symmetry / util.hh
forge / components / VarLengthBuild.hhfragment / ConstantLengthFragSet.fwd.hh
forge / components / VarLengthBuild.hhfragment / FrameList.fwd.hh
forge / components / VarLengthBuild.hhkinematics / MoveMap.fwd.hh
forge / components / VarLengthBuild.hhfragment / OrderedFragSet.fwd.hh
forge / components / VarLengthBuild.hhpose / Pose.fwd.hh
forge / components / VarLengthBuild.hhscoring / ScoreFunction.fwd.hh
qsar / scoring_grid / VdwGrid.ccid / AtomID.hh
qsar / scoring_grid / VdwGrid.ccchemical / AtomType.hh
qsar / scoring_grid / VdwGrid.ccconformation / Conformation.hh
qsar / scoring_grid / VdwGrid.ccpose / Pose.hh
qsar / scoring_grid / VdwGrid.ccconformation / Residue.hh
qsar / scoring_grid / VdwGrid.ccchemical / ResidueType.hh
qsar / scoring_grid / VdwGrid.ccpose / util.hh
viewer / viewers.ccid / AtomID.hh
viewer / viewers.ccchemical / AtomType.hh
viewer / viewers.ccconformation / Conformation.hh
viewer / viewers.ccpose / Pose.hh
viewer / viewers.ccconformation / Residue.hh
viewer / viewers.hhid / AtomID.fwd.hh
viewer / viewers.hhconformation / Conformation.fwd.hh
viewer / viewers.hhpose / Pose.fwd.hh
viewer / viewers.hhconformation / Residue.fwd.hh
viewer / viewers.hhtypes.hh
vip / VIP_Mover.ccscoring / Energies.hh
vip / VIP_Mover.cckinematics / MoveMap.hh
vip / VIP_Mover.ccpack / task / PackerTask.hh
vip / VIP_Mover.ccpose / PDBInfo.hh
vip / VIP_Mover.ccpack / task / ResfileReader.hh
vip / VIP_Mover.ccconformation / Residue.hh
vip / VIP_Mover.ccscoring / ScoreFunction.hh
vip / VIP_Mover.ccscoring / ScoreFunctionFactory.hh
vip / VIP_Mover.ccpack / task / TaskFactory.hh
vip / VIP_Mover.ccpack / task / operation / TaskOperations.hh
vip / VIP_Report.ccscoring / Energies.hh
vip / VIP_Report.ccconformation / Residue.hh
vip / VIP_Report.ccscoring / ScoreFunction.hh
vip / VIP_Report.ccscoring / ScoreFunctionFactory.hh
vip / VIP_Report.hhpose / Pose.hh
vip / VIP_Utils.ccscoring / Energies.hh
vip / VIP_Utils.ccscoring / EnergyGraph.hh
vip / VIP_Utils.cckinematics / MoveMap.hh
vip / VIP_Utils.ccpose / Pose.hh
vip / VIP_Utils.ccscoring / packstat / types.hh
vip / VIP_Utils.cctypes.hh
vip / VIP_Utils.hhkinematics / MoveMap.fwd.hh
vip / VIP_Utils.hhpose / Pose.hh
vip / VIP_Utils.hhscoring / packstat / types.hh
vip / VIP_Utils.hhtypes.hh
viewer / visualize.cckinematics / tree / Atom.hh
viewer / visualize.ccid / AtomID.hh
viewer / visualize.cckinematics / AtomTree.hh
viewer / visualize.ccchemical / AtomType.hh
viewer / visualize.ccconformation / Conformation.hh
viewer / visualize.cckinematics / Edge.hh
viewer / visualize.cckinematics / FoldTree.hh
viewer / visualize.ccpose / Pose.hh
viewer / visualize.cctypes.hh
viewer / visualize.hhpose / Pose.fwd.hh
protein_interface_design / movers / VLB.ccimport_pose / import_pose.hh
protein_interface_design / movers / VLB.cckinematics / MoveMap.hh
protein_interface_design / movers / VLB.ccpose / Pose.hh
protein_interface_design / movers / VLB.ccscoring / ScoreFunction.hh
protein_interface_design / movers / VLB.ccpose / selection.hh
protein_interface_design / movers / VLB.cctypes.hh
protein_interface_design / movers / VLB.hhpose / Pose.fwd.hh
protein_interface_design / movers / VLB.hhscoring / ScoreFunction.fwd.hh
abinitio / vs_test.ccchemical / ChemicalManager.hh
abinitio / vs_test.cckinematics / MoveMap.hh
abinitio / vs_test.ccpose / Pose.hh
abinitio / vs_test.ccio / silent / ProteinSilentStruct.hh
abinitio / vs_test.ccio / silent / ProteinSilentStruct.tmpl.hh
abinitio / vs_test.ccscoring / ScoreFunction.fwd.hh
abinitio / vs_test.ccscoring / ScoreFunction.hh
abinitio / vs_test.ccscoring / ScoreFunctionFactory.hh
abinitio / vs_test.ccsequence / Sequence.hh
abinitio / vs_test.ccio / silent / SilentFileData.hh
abinitio / vs_test.ccio / silent / SilentStruct.hh
abinitio / vs_test.cctypes.hh
abinitio / vs_test.ccsequence / util.hh
dna / WatsonCrickRotamerCouplings.ccpack / task / PackerTask.hh
dna / WatsonCrickRotamerCouplings.ccpose / PDBInfo.hh
dna / WatsonCrickRotamerCouplings.ccpose / Pose.hh
dna / WatsonCrickRotamerCouplings.ccconformation / ResidueMatcher.hh
dna / WatsonCrickRotamerCouplings.ccchemical / ResidueType.hh
dna / WatsonCrickRotamerCouplings.ccpack / rotamer_set / RotamerCouplings.hh
dna / WatsonCrickRotamerCouplings.hhpack / task / operation / TaskOperation.hh
dna / WatsonCrickRotamerCouplingsCreator.hhpack / task / operation / TaskOperationCreator.hh
hybridization / WeightedFragmentSmoothTrialMover.ccfragment / Frame.hh
hybridization / WeightedFragmentSmoothTrialMover.ccfragment / FrameIterator.hh
hybridization / WeightedFragmentSmoothTrialMover.hhfragment / FragSet.hh
hybridization / WeightedFragmentSmoothTrialMover.hhfragment / Frame.hh
hybridization / WeightedFragmentSmoothTrialMover.hhfragment / FrameList.hh
hybridization / WeightedFragmentSmoothTrialMover.hhtypes.hh
hybridization / WeightedFragmentTrialMover.ccfragment / Frame.hh
hybridization / WeightedFragmentTrialMover.ccfragment / FrameIterator.hh
hybridization / WeightedFragmentTrialMover.hhfragment / FragSet.hh
moves / WhileMover.hhpose / Pose.fwd.hh
moves / WhileMover.hhtypes.hh
loops / loop_closure / ccd / WidthFirstSlidingWindowLoopClosure.ccfragment / BBTorsionSRFD.hh
loops / loop_closure / ccd / WidthFirstSlidingWindowLoopClosure.cckinematics / FoldTree.hh
loops / loop_closure / ccd / WidthFirstSlidingWindowLoopClosure.ccfragment / FragData.hh
loops / loop_closure / ccd / WidthFirstSlidingWindowLoopClosure.ccfragment / FragSet.hh
loops / loop_closure / ccd / WidthFirstSlidingWindowLoopClosure.ccfragment / Frame.hh
loops / loop_closure / ccd / WidthFirstSlidingWindowLoopClosure.ccfragment / FrameList.hh
loops / loop_closure / ccd / WidthFirstSlidingWindowLoopClosure.cckinematics / MoveMap.hh
loops / loop_closure / ccd / WidthFirstSlidingWindowLoopClosure.ccpose / Pose.hh
loops / loop_closure / ccd / WidthFirstSlidingWindowLoopClosure.ccscoring / ScoreFunction.hh
loops / loop_closure / ccd / WidthFirstSlidingWindowLoopClosure.hhfragment / FragSet.fwd.hh
loops / loop_closure / ccd / WidthFirstSlidingWindowLoopClosure.hhkinematics / MoveMap.fwd.hh
loops / loop_closure / ccd / WidthFirstSlidingWindowLoopClosure.hhfragment / OrderedFragSet.hh
loops / loop_closure / ccd / WidthFirstSlidingWindowLoopClosure.hhpose / Pose.fwd.hh
loops / loop_closure / ccd / WidthFirstSlidingWindowLoopClosure.hhscoring / ScoreFunction.fwd.hh
loops / loop_closure / ccd / WidthFirstSlidingWindowLoopClosure.hhtypes.hh
simple_moves / WobbleMover.cckinematics / FoldTree.hh
simple_moves / WobbleMover.ccfragment / FragSet.hh
simple_moves / WobbleMover.cckinematics / MoveMap.hh
simple_moves / WobbleMover.ccpose / Pose.hh
simple_moves / WobbleMover.hhfragment / FragSet.fwd.hh
simple_moves / WobbleMover.hhfragment / Frame.fwd.hh
simple_moves / WobbleMover.hhpose / Pose.fwd.hh
simple_moves / WobbleMover.hhtypes.hh
wum2 / WorkUnit.hhio / serialization / PipeMap.fwd.hh
wum2 / WorkUnit.hhpose / Pose.hh
wum2 / WorkUnit.hhscoring / ScoreFunction.fwd.hh
wum2 / WorkUnit.hhtypes.hh
relax / WorkUnit_BatchRelax.ccchemical / ChemicalManager.fwd.hh
relax / WorkUnit_BatchRelax.ccscoring / constraints / ConstraintIO.hh
relax / WorkUnit_BatchRelax.ccimport_pose / import_pose.hh
relax / WorkUnit_BatchRelax.cckinematics / Jump.hh
relax / WorkUnit_BatchRelax.ccpose / Pose.hh
relax / WorkUnit_BatchRelax.ccchemical / ResidueType.hh
relax / WorkUnit_BatchRelax.ccscoring / ScoreFunction.hh
relax / WorkUnit_BatchRelax.ccscoring / ScoreFunctionFactory.hh
relax / WorkUnit_BatchRelax.ccio / silent / SilentStruct.hh
relax / WorkUnit_BatchRelax.ccutil / SwitchResidueTypeSet.hh
relax / WorkUnit_BatchRelax.ccscoring / constraints / util.hh
relax / WorkUnit_BatchRelax.hhpose / Pose.hh
loophash / WorkUnit_LoopHash.ccio / silent / BinaryProteinSilentStruct.hh
loophash / WorkUnit_LoopHash.ccchemical / ChemicalManager.hh
loophash / WorkUnit_LoopHash.ccio / silent / ProteinSilentStruct.hh
loophash / WorkUnit_LoopHash.ccio / silent / ProteinSilentStruct.tmpl.hh
loophash / WorkUnit_LoopHash.ccchemical / ResidueTypeSet.hh
loophash / WorkUnit_LoopHash.ccscoring / ScoreFunction.hh
loophash / WorkUnit_LoopHash.ccio / silent / SilentFileData.hh
loophash / WorkUnit_LoopHash.ccio / silent / SilentStruct.hh
loophash / WorkUnit_LoopHash.ccio / silent / SilentStructFactory.hh
loophash / WorkUnit_LoopHash.ccutil / SwitchResidueTypeSet.hh
wum / WorkUnitBase.ccpose / Pose.hh
wum / WorkUnitBase.hhpose / Pose.fwd.hh
wum / WorkUnitBase.hhtypes.hh
wum / WorkUnitList.hhtypes.hh
wum / WorkUnitManager.ccio / silent / SilentStruct.hh
wum / WorkUnitManager.hhpose / Pose.fwd.hh
wum / WorkUnitManager.hhtypes.hh
match / output / WriteKinemageOutputter.ccconformation / Residue.hh
match / output / WriteUpstreamCoordinateKineamge.ccid / AtomID.hh
match / output / WriteUpstreamCoordinateKineamge.ccchemical / AtomType.hh
match / output / WriteUpstreamCoordinateKineamge.ccconformation / Residue.hh
match / output / WriteUpstreamCoordinateKineamge.ccchemical / ResidueType.hh
sic_dock / xyzStripeHashPose.hhid / AtomID.hh
sic_dock / xyzStripeHashPose.hhid / AtomID_Map.hh
sic_dock / xyzStripeHashPose.hhchemical / AtomType.hh
sic_dock / xyzStripeHashPose.hhpose / Pose.hh
sic_dock / xyzStripeHashPose.hhconformation / Residue.hh
sic_dock / xyzStripeHashPoseWithMeta.hhid / AtomID.hh
sic_dock / xyzStripeHashPoseWithMeta.hhid / AtomID_Map.hh
sic_dock / xyzStripeHashPoseWithMeta.hhchemical / AtomType.hh
sic_dock / xyzStripeHashPoseWithMeta.hhpose / Pose.hh
sic_dock / xyzStripeHashPoseWithMeta.hhconformation / Residue.hh
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