swa → core Relation

File in src/protocols/swa	Includes file in src/core
InputStreamWithResidueInfo.cc	import_pose / pose_stream / ExtendedPoseInputStream.hh
InputStreamWithResidueInfo.cc	import_pose / pose_stream / PDBPoseInputStream.hh
InputStreamWithResidueInfo.cc	pose / Pose.hh
InputStreamWithResidueInfo.cc	import_pose / pose_stream / PoseInputStream.fwd.hh
InputStreamWithResidueInfo.cc	chemical / ResidueType.hh
InputStreamWithResidueInfo.cc	scoring / rms_util.hh
InputStreamWithResidueInfo.cc	import_pose / pose_stream / SilentFilePoseInputStream.hh
InputStreamWithResidueInfo.cc	types.hh
InputStreamWithResidueInfo.cc	pose / util.hh
InputStreamWithResidueInfo.hh	pose / Pose.fwd.hh
InputStreamWithResidueInfo.hh	import_pose / pose_stream / PoseInputStream.fwd.hh
InputStreamWithResidueInfo.hh	chemical / ResidueTypeSet.fwd.hh
InputStreamWithResidueInfo.hh	types.hh
MainChainTorsionClasses.cc	io / silent / BinaryProteinSilentStruct.hh
protein / MainChainTorsionClasses.cc	io / silent / BinaryProteinSilentStruct.hh
MainChainTorsionClasses.cc	id / NamedAtomID.hh
protein / MainChainTorsionClasses.cc	id / NamedAtomID.hh
MainChainTorsionClasses.cc	pose / Pose.hh
protein / MainChainTorsionClasses.cc	pose / Pose.hh
MainChainTorsionClasses.cc	scoring / rms_util.hh
protein / MainChainTorsionClasses.cc	scoring / rms_util.hh
MainChainTorsionClasses.cc	scoring / rms_util.tmpl.hh
protein / MainChainTorsionClasses.cc	scoring / rms_util.tmpl.hh
MainChainTorsionClasses.cc	io / silent / SilentFileData.hh
protein / MainChainTorsionClasses.cc	io / silent / SilentFileData.hh
MainChainTorsionClasses.cc	types.hh
protein / MainChainTorsionClasses.cc	types.hh
MainChainTorsionClasses.cc	pose / util.hh
protein / MainChainTorsionClasses.cc	pose / util.hh
protein / MainChainTorsionClasses.cc	chemical / util.hh
MainChainTorsionClasses.hh	types.hh
protein / MainChainTorsionClasses.hh	types.hh
protein / MainChainTorsionSet.cc	io / silent / BinaryProteinSilentStruct.hh
MainChainTorsionSet.cc	kinematics / Jump.hh
MainChainTorsionSet.cc	pose / Pose.fwd.hh
MainChainTorsionSet.cc	id / types.hh
MainChainTorsionSet.cc	types.hh
protein / MainChainTorsionSet.cc	types.hh
MainChainTorsionSet.cc	pose / util.hh
MainChainTorsionSet.hh	types.hh
protein / MainChainTorsionSet.hh	types.hh
PoseFilter.hh	pose / Pose.fwd.hh
PoseFilter_RMSD_Screen.cc	pose / Pose.hh
PoseFilter_RMSD_Screen.cc	scoring / rms_util.hh
PoseFilter_RMSD_Screen.cc	scoring / rms_util.tmpl.hh
PoseFilter_RMSD_Screen.cc	types.hh
PoseFilter_RMSD_Screen.hh	id / AtomID.fwd.hh
PoseFilter_RMSD_Screen.hh	pose / Pose.fwd.hh
PoseFilter_RMSD_Screen.hh	types.hh
RigidBodySampler.cc	id / AtomID.hh
RigidBodySampler.cc	io / silent / BinaryRNASilentStruct.hh
RigidBodySampler.cc	scoring / hbonds / HBondOptions.hh
RigidBodySampler.cc	scoring / hbonds / hbonds.hh
RigidBodySampler.cc	scoring / hbonds / HBondSet.hh
RigidBodySampler.cc	pose / Pose.hh
RigidBodySampler.cc	chemical / ResidueTypeSet.hh
RigidBodySampler.cc	scoring / rms_util.hh
RigidBodySampler.cc	scoring / rna / RNA_CentroidInfo.hh
RigidBodySampler.cc	scoring / ScoreFunction.hh
RigidBodySampler.cc	scoring / ScoreFunctionFactory.hh
RigidBodySampler.cc	io / silent / SilentFileData.hh
RigidBodySampler.cc	io / silent / SilentStruct.hh
RigidBodySampler.cc	kinematics / Stub.hh
RigidBodySampler.cc	types.hh
RigidBodySampler.cc	pose / util.hh
RigidBodySampler.hh	pose / Pose.hh
RigidBodySampler.hh	conformation / Residue.fwd.hh
RigidBodySampler.hh	scoring / ScoreFunction.hh
RigidBodySampler.hh	io / silent / SilentFileData.hh
RigidBodySampler.hh	io / silent / SilentStruct.fwd.hh
RigidBodySampler.hh	types.hh
monte_carlo / RNA_AddMover.cc	pose / Pose.hh
monte_carlo / RNA_AddMover.cc	conformation / ResidueFactory.hh
monte_carlo / RNA_AddMover.cc	chemical / ResidueTypeSet.hh
monte_carlo / RNA_AddMover.cc	scoring / ScoreFunction.hh
monte_carlo / RNA_AddMover.cc	types.hh
monte_carlo / RNA_AddMover.cc	pose / util.hh
monte_carlo / RNA_AddMover.cc	chemical / VariantType.hh
monte_carlo / RNA_AddMover.hh	pose / Pose.fwd.hh
monte_carlo / RNA_AddMover.hh	chemical / ResidueTypeSet.fwd.hh
monte_carlo / RNA_AddMover.hh	scoring / ScoreFunction.fwd.hh
monte_carlo / RNA_AddMover.hh	types.hh
monte_carlo / RNA_AddOrDeleteMover.cc	pose / Pose.hh
monte_carlo / RNA_AddOrDeleteMover.cc	types.hh
monte_carlo / RNA_AddOrDeleteMover.cc	pose / util.hh
monte_carlo / RNA_AddOrDeleteMover.cc	chemical / VariantType.hh
monte_carlo / RNA_AddOrDeleteMover.hh	pose / Pose.fwd.hh
monte_carlo / RNA_AddOrDeleteMover.hh	types.hh
rna / RNA_AnalyticLoopCloser.cc	kinematics / tree / Atom.hh
rna / RNA_AnalyticLoopCloser.cc	id / AtomID.hh
rna / RNA_AnalyticLoopCloser.cc	kinematics / AtomTree.hh
rna / RNA_AnalyticLoopCloser.cc	id / DOF_ID.hh
rna / RNA_AnalyticLoopCloser.cc	kinematics / FoldTree.hh
rna / RNA_AnalyticLoopCloser.cc	id / NamedAtomID.hh
rna / RNA_AnalyticLoopCloser.cc	pose / Pose.hh
rna / RNA_AnalyticLoopCloser.cc	conformation / Residue.hh
rna / RNA_AnalyticLoopCloser.cc	chemical / ResidueType.hh
rna / RNA_AnalyticLoopCloser.cc	scoring / ScoreFunction.hh
rna / RNA_AnalyticLoopCloser.cc	types.hh
rna / RNA_AnalyticLoopCloser.cc	chemical / VariantType.hh
rna / RNA_AnalyticLoopCloser.hh	kinematics / tree / Atom.fwd.hh
rna / RNA_AnalyticLoopCloser.hh	id / DOF_ID.fwd.hh
rna / RNA_AnalyticLoopCloser.hh	id / NamedAtomID.hh
rna / RNA_AnalyticLoopCloser.hh	pose / Pose.fwd.hh
rna / RNA_AnalyticLoopCloser.hh	scoring / ScoreFunction.hh
rna / RNA_AnalyticLoopCloser.hh	types.hh
monte_carlo / RNA_DeleteMover.cc	pose / Pose.hh
monte_carlo / RNA_DeleteMover.cc	types.hh
monte_carlo / RNA_DeleteMover.cc	pose / util.hh
monte_carlo / RNA_DeleteMover.cc	chemical / VariantType.hh
monte_carlo / RNA_DeleteMover.hh	pose / Pose.fwd.hh
monte_carlo / RNA_DeleteMover.hh	types.hh
rna / RNA_LoopCloseSampler.cc	id / AtomID.hh
rna / RNA_LoopCloseSampler.cc	io / silent / BinaryRNASilentStruct.hh
rna / RNA_LoopCloseSampler.cc	conformation / Conformation.hh
rna / RNA_LoopCloseSampler.cc	scoring / Energies.hh
rna / RNA_LoopCloseSampler.cc	scoring / EnergyGraph.hh
rna / RNA_LoopCloseSampler.cc	scoring / EnergyMap.fwd.hh
rna / RNA_LoopCloseSampler.cc	scoring / EnergyMap.hh
rna / RNA_LoopCloseSampler.cc	pose / Pose.hh
rna / RNA_LoopCloseSampler.cc	io / pdb / pose_io.hh
rna / RNA_LoopCloseSampler.cc	scoring / rms_util.tmpl.hh
rna / RNA_LoopCloseSampler.cc	scoring / rna / RNA_TorsionPotential.hh
rna / RNA_LoopCloseSampler.cc	scoring / rna / RNA_Util.hh
rna / RNA_LoopCloseSampler.cc	scoring / ScoreFunction.hh
rna / RNA_LoopCloseSampler.cc	scoring / ScoreFunctionFactory.hh
rna / RNA_LoopCloseSampler.cc	scoring / ScoreType.hh
rna / RNA_LoopCloseSampler.cc	io / silent / SilentFileData.fwd.hh
rna / RNA_LoopCloseSampler.cc	io / silent / SilentFileData.hh
rna / RNA_LoopCloseSampler.cc	id / TorsionID.hh
rna / RNA_LoopCloseSampler.cc	types.hh
rna / RNA_LoopCloseSampler.cc	chemical / util.hh
rna / RNA_LoopCloseSampler.cc	pose / util.hh
rna / RNA_LoopCloseSampler.cc	chemical / VariantType.hh
rna / RNA_LoopCloseSampler.hh	pose / Pose.fwd.hh
rna / RNA_LoopCloseSampler.hh	scoring / ScoreFunction.fwd.hh
rna / RNA_LoopCloseSampler.hh	io / silent / SilentFileData.fwd.hh
rna / RNA_LoopCloseSampler.hh	types.hh
monte_carlo / RNA_O2StarMover.cc	scoring / Energies.hh
monte_carlo / RNA_O2StarMover.cc	scoring / EnergyGraph.hh
monte_carlo / RNA_O2StarMover.cc	pose / Pose.hh
monte_carlo / RNA_O2StarMover.cc	scoring / ScoreFunction.hh
monte_carlo / RNA_O2StarMover.cc	id / TorsionID.hh
monte_carlo / RNA_O2StarMover.cc	types.hh
monte_carlo / RNA_O2StarMover.cc	pose / util.hh
monte_carlo / RNA_O2StarMover.cc	chemical / VariantType.hh
monte_carlo / RNA_O2StarMover.hh	pose / Pose.fwd.hh
monte_carlo / RNA_O2StarMover.hh	scoring / ScoreFunction.fwd.hh
monte_carlo / RNA_O2StarMover.hh	types.hh
monte_carlo / RNA_SWA_MonteCarloMover.cc	io / silent / BinaryRNASilentStruct.hh
monte_carlo / RNA_SWA_MonteCarloMover.cc	pose / Pose.hh
monte_carlo / RNA_SWA_MonteCarloMover.cc	conformation / Residue.hh
monte_carlo / RNA_SWA_MonteCarloMover.cc	scoring / rms_util.hh
monte_carlo / RNA_SWA_MonteCarloMover.cc	scoring / ScoreFunction.hh
monte_carlo / RNA_SWA_MonteCarloMover.cc	io / silent / SilentFileData.hh
monte_carlo / RNA_SWA_MonteCarloMover.cc	io / silent / SilentStruct.hh
monte_carlo / RNA_SWA_MonteCarloMover.cc	id / types.hh
monte_carlo / RNA_SWA_MonteCarloMover.cc	types.hh
monte_carlo / RNA_SWA_MonteCarloMover.cc	pose / util.hh
monte_carlo / RNA_SWA_MonteCarloMover.cc	chemical / VariantType.hh
monte_carlo / RNA_SWA_MonteCarloMover.hh	pose / Pose.fwd.hh
monte_carlo / RNA_SWA_MonteCarloMover.hh	scoring / ScoreFunction.fwd.hh
monte_carlo / RNA_SWA_MonteCarloMover.hh	io / silent / SilentFileData.fwd.hh
monte_carlo / RNA_SWA_MonteCarloMover.hh	types.hh
monte_carlo / RNA_SWA_MonteCarloUtil.cc	pose / Pose.hh
monte_carlo / RNA_SWA_MonteCarloUtil.cc	types.hh
monte_carlo / RNA_SWA_MonteCarloUtil.cc	pose / util.hh
monte_carlo / RNA_SWA_MonteCarloUtil.cc	chemical / VariantType.hh
monte_carlo / RNA_SWA_MonteCarloUtil.hh	pose / Pose.fwd.hh
monte_carlo / RNA_SWA_MonteCarloUtil.hh	types.hh
monte_carlo / RNA_TorsionMover.cc	pose / Pose.hh
monte_carlo / RNA_TorsionMover.cc	conformation / ResidueFactory.hh
monte_carlo / RNA_TorsionMover.cc	chemical / ResidueTypeSet.hh
monte_carlo / RNA_TorsionMover.cc	scoring / rna / RNA_Util.hh
monte_carlo / RNA_TorsionMover.cc	id / TorsionID.hh
monte_carlo / RNA_TorsionMover.cc	types.hh
monte_carlo / RNA_TorsionMover.cc	pose / util.hh
monte_carlo / RNA_TorsionMover.cc	chemical / VariantType.hh
monte_carlo / RNA_TorsionMover.hh	pose / Pose.fwd.hh
monte_carlo / RNA_TorsionMover.hh	scoring / rna / RNA_FittedTorsionInfo.hh
monte_carlo / RNA_TorsionMover.hh	types.hh
protein / StepWiseBetaAntiParallelJumpSampleGenerator.cc	kinematics / FoldTree.hh
protein / StepWiseBetaAntiParallelJumpSampleGenerator.cc	kinematics / Jump.hh
protein / StepWiseBetaAntiParallelJumpSampleGenerator.cc	pose / Pose.hh
protein / StepWiseBetaAntiParallelJumpSampleGenerator.cc	types.hh
protein / StepWiseBetaAntiParallelJumpSampleGenerator.hh	kinematics / Jump.hh
protein / StepWiseBetaAntiParallelJumpSampleGenerator.hh	pose / Pose.fwd.hh
protein / StepWiseBetaAntiParallelJumpSampleGenerator.hh	types.hh
protein / StepWiseBetaAntiParallelUtil.cc	pose / annotated_sequence.hh
protein / StepWiseBetaAntiParallelUtil.cc	io / silent / BinaryProteinSilentStruct.hh
protein / StepWiseBetaAntiParallelUtil.cc	chemical / ChemicalManager.hh
protein / StepWiseBetaAntiParallelUtil.cc	scoring / hbonds / HBondOptions.hh
protein / StepWiseBetaAntiParallelUtil.cc	scoring / hbonds / hbonds.hh
protein / StepWiseBetaAntiParallelUtil.cc	scoring / hbonds / HBondSet.hh
protein / StepWiseBetaAntiParallelUtil.cc	import_pose / import_pose.hh
protein / StepWiseBetaAntiParallelUtil.cc	id / NamedAtomID.hh
protein / StepWiseBetaAntiParallelUtil.cc	pose / Pose.hh
protein / StepWiseBetaAntiParallelUtil.cc	scoring / ScoreFunction.hh
protein / StepWiseBetaAntiParallelUtil.cc	scoring / ScoreFunctionFactory.hh
protein / StepWiseBetaAntiParallelUtil.cc	io / silent / SilentFileData.hh
protein / StepWiseBetaAntiParallelUtil.cc	pose / util.hh
protein / StepWiseBetaAntiParallelUtil.cc	chemical / VariantType.hh
protein / StepWiseBetaAntiParallelUtil.hh	pose / Pose.fwd.hh
protein / StepWiseBetaAntiParallelUtil.hh	kinematics / Stub.fwd.hh
protein / StepWiseBetaAntiParallelUtil.hh	types.hh
StepWiseClusterer.cc	id / AtomID.hh
StepWiseClusterer.cc	chemical / ChemicalManager.hh
StepWiseClusterer.cc	pose / Pose.hh
StepWiseClusterer.cc	import_pose / pose_stream / PoseInputStream.fwd.hh
StepWiseClusterer.cc	import_pose / pose_stream / PoseInputStream.hh
StepWiseClusterer.cc	chemical / ResidueTypeSet.hh
StepWiseClusterer.cc	scoring / rms_util.hh
StepWiseClusterer.cc	io / silent / SilentFileData.hh
StepWiseClusterer.cc	import_pose / pose_stream / SilentFilePoseInputStream.hh
StepWiseClusterer.cc	io / silent / SilentStruct.hh
StepWiseClusterer.cc	types.hh
StepWiseClusterer.cc	pose / util.hh
StepWiseClusterer.hh	pose / Pose.fwd.hh
StepWiseClusterer.hh	chemical / ResidueTypeSet.fwd.hh
StepWiseClusterer.hh	scoring / ScoreFunction.fwd.hh
StepWiseClusterer.hh	io / silent / SilentFileData.fwd.hh
StepWiseClusterer.hh	import_pose / pose_stream / SilentFilePoseInputStream.fwd.hh
StepWiseClusterer.hh	io / silent / SilentStruct.fwd.hh
StepWiseClusterer.hh	types.hh
StepWiseCombineSampleGenerator.cc	types.hh
StepWiseCombineSampleGenerator.hh	pose / Pose.fwd.hh
StepWiseCombineSampleGenerator.hh	types.hh
StepWiseDoNothingSampleGenerator.cc	types.hh
StepWiseDoNothingSampleGenerator.hh	pose / Pose.fwd.hh
StepWiseDoNothingSampleGenerator.hh	types.hh
StepWiseFilterer.cc	scoring / Energies.hh
StepWiseFilterer.cc	pose / Pose.hh
StepWiseFilterer.cc	scoring / ScoreFunction.hh
StepWiseFilterer.cc	scoring / ScoreFunctionFactory.hh
StepWiseFilterer.cc	types.hh
StepWiseFilterer.hh	pose / Pose.fwd.hh
StepWiseFilterer.hh	types.hh
StepWiseIdentitySampleGenerator.cc	types.hh
StepWiseIdentitySampleGenerator.hh	pose / Pose.fwd.hh
StepWiseIdentitySampleGenerator.hh	types.hh
StepWiseJobParameters.cc	pose / Pose.hh
StepWiseJobParameters.hh	pose / Pose.fwd.hh
StepWiseJobParameters.hh	types.hh
StepWisePoseCombineSampleGenerator.cc	types.hh
StepWisePoseCombineSampleGenerator.hh	pose / Pose.fwd.hh
StepWisePoseCombineSampleGenerator.hh	types.hh
StepWisePoseSampleGenerator.hh	pose / Pose.fwd.hh
StepWisePoseSetup.cc	pose / annotated_sequence.hh
StepWisePoseSetup.cc	scoring / constraints / AtomPairConstraint.hh
StepWisePoseSetup.cc	chemical / ChemicalManager.hh
StepWisePoseSetup.cc	conformation / Conformation.hh
StepWisePoseSetup.cc	scoring / constraints / ConstraintIO.hh
StepWisePoseSetup.cc	scoring / constraints / ConstraintSet.hh
StepWisePoseSetup.cc	io / raw_data / DisulfideFile.hh
StepWisePoseSetup.cc	scoring / constraints / FadeFunc.hh
StepWisePoseSetup.cc	kinematics / FoldTree.hh
StepWisePoseSetup.cc	scoring / constraints / Func.fwd.hh
StepWisePoseSetup.cc	import_pose / import_pose.hh
StepWisePoseSetup.cc	pose / Pose.hh
StepWisePoseSetup.cc	conformation / Residue.hh
StepWisePoseSetup.cc	scoring / rms_util.hh
StepWisePoseSetup.cc	scoring / rna / RNA_Util.hh
StepWisePoseSetup.cc	scoring / ScoreFunction.hh
StepWisePoseSetup.cc	scoring / ScoreType.hh
StepWisePoseSetup.cc	id / TorsionID.hh
StepWisePoseSetup.cc	types.hh
StepWisePoseSetup.cc	pose / util.hh
StepWisePoseSetup.cc	chemical / VariantType.hh
StepWisePoseSetup.hh	id / AtomID.fwd.hh
StepWisePoseSetup.hh	id / AtomID_Map.hh
StepWisePoseSetup.hh	scoring / constraints / ConstraintSet.fwd.hh
StepWisePoseSetup.hh	pose / Pose.fwd.hh
StepWisePoseSetup.hh	conformation / Residue.fwd.hh
StepWisePoseSetup.hh	chemical / ResidueTypeSet.fwd.hh
StepWisePoseSetup.hh	types.hh
protein / StepWiseProteinCCD_Closer.cc	id / AtomID.hh
protein / StepWiseProteinCCD_Closer.cc	kinematics / Jump.hh
protein / StepWiseProteinCCD_Closer.cc	pose / Pose.hh
protein / StepWiseProteinCCD_Closer.cc	chemical / ResidueType.hh
protein / StepWiseProteinCCD_Closer.cc	id / TorsionID.hh
protein / StepWiseProteinCCD_Closer.cc	types.hh
protein / StepWiseProteinCCD_Closer.cc	chemical / VariantType.hh
protein / StepWiseProteinCCD_Closer.hh	kinematics / MoveMap.hh
protein / StepWiseProteinCCD_Closer.hh	pose / Pose.fwd.hh
protein / StepWiseProteinCCD_Closer.hh	id / TorsionID.hh
protein / StepWiseProteinFilterer.cc	scoring / Energies.hh
protein / StepWiseProteinFilterer.cc	pose / Pose.hh
protein / StepWiseProteinFilterer.cc	scoring / ScoreFunction.hh
protein / StepWiseProteinFilterer.cc	scoring / ScoreFunctionFactory.hh
protein / StepWiseProteinFilterer.cc	types.hh
protein / StepWiseProteinFilterer.hh	pose / Pose.fwd.hh
protein / StepWiseProteinFilterer.hh	types.hh
protein / StepWiseProteinFragmentSampleGenerator.cc	fragment / ConstantLengthFragSet.hh
protein / StepWiseProteinFragmentSampleGenerator.cc	fragment / FragSet.hh
protein / StepWiseProteinFragmentSampleGenerator.cc	fragment / Frame.hh
protein / StepWiseProteinFragmentSampleGenerator.cc	fragment / FrameList.hh
protein / StepWiseProteinFragmentSampleGenerator.cc	types.hh
protein / StepWiseProteinFragmentSampleGenerator.hh	fragment / Frame.fwd.hh
protein / StepWiseProteinFragmentSampleGenerator.hh	pose / Pose.fwd.hh
protein / StepWiseProteinFragmentSampleGenerator.hh	types.hh
protein / StepWiseProteinJumpSampleGenerator.cc	kinematics / Jump.hh
protein / StepWiseProteinJumpSampleGenerator.cc	pose / Pose.hh
protein / StepWiseProteinJumpSampleGenerator.cc	types.hh
protein / StepWiseProteinJumpSampleGenerator.hh	kinematics / Jump.hh
protein / StepWiseProteinJumpSampleGenerator.hh	pose / Pose.fwd.hh
protein / StepWiseProteinJumpSampleGenerator.hh	types.hh
protein / StepWiseProteinLoopBridger.cc	kinematics / FoldTree.hh
protein / StepWiseProteinLoopBridger.cc	kinematics / Jump.hh
protein / StepWiseProteinLoopBridger.cc	pose / Pose.hh
protein / StepWiseProteinLoopBridger.cc	scoring / Ramachandran.hh
protein / StepWiseProteinLoopBridger.cc	conformation / Residue.hh
protein / StepWiseProteinLoopBridger.cc	chemical / ResidueConnection.hh
protein / StepWiseProteinLoopBridger.cc	io / silent / SilentFileData.fwd.hh
protein / StepWiseProteinLoopBridger.cc	id / TorsionID.hh
protein / StepWiseProteinLoopBridger.cc	types.hh
protein / StepWiseProteinLoopBridger.cc	chemical / VariantType.hh
protein / StepWiseProteinLoopBridger.hh	pose / Pose.fwd.hh
protein / StepWiseProteinLoopBridger.hh	scoring / Ramachandran.hh
protein / StepWiseProteinLoopBridger.hh	id / TorsionID.fwd.hh
protein / StepWiseProteinMainChainSampleGenerator.cc	pose / Pose.hh
protein / StepWiseProteinMainChainSampleGenerator.cc	id / TorsionID.hh
protein / StepWiseProteinMainChainSampleGenerator.cc	types.hh
protein / StepWiseProteinMainChainSampleGenerator.hh	pose / Pose.fwd.hh
protein / StepWiseProteinMainChainSampleGenerator.hh	id / TorsionID.fwd.hh
protein / StepWiseProteinMainChainSampleGenerator.hh	types.hh
protein / StepWiseProteinPacker.cc	scoring / Energies.hh
protein / StepWiseProteinPacker.cc	scoring / EnergyGraph.hh
protein / StepWiseProteinPacker.cc	graph / Graph.hh
protein / StepWiseProteinPacker.cc	kinematics / Jump.hh
protein / StepWiseProteinPacker.cc	pack / pack_rotamers.hh
protein / StepWiseProteinPacker.cc	pack / task / PackerTask.hh
protein / StepWiseProteinPacker.cc	pose / Pose.hh
protein / StepWiseProteinPacker.cc	conformation / Residue.hh
protein / StepWiseProteinPacker.cc	pack / rotamer_trials.hh
protein / StepWiseProteinPacker.cc	kinematics / RT.hh
protein / StepWiseProteinPacker.cc	scoring / ScoreFunction.hh
protein / StepWiseProteinPacker.cc	scoring / ScoreFunctionFactory.hh
protein / StepWiseProteinPacker.cc	io / silent / SilentFileData.fwd.hh
protein / StepWiseProteinPacker.cc	io / silent / SilentFileData.hh
protein / StepWiseProteinPacker.cc	pack / task / TaskFactory.hh
protein / StepWiseProteinPacker.cc	pack / task / operation / TaskOperations.hh
protein / StepWiseProteinPacker.cc	types.hh
protein / StepWiseProteinPacker.hh	pack / task / PackerTask.fwd.hh
protein / StepWiseProteinPacker.hh	pose / Pose.fwd.hh
protein / StepWiseProteinPacker.hh	scoring / ScoreFunction.fwd.hh
protein / StepWiseProteinPacker.hh	io / silent / SilentFileData.fwd.hh
protein / StepWiseProteinPacker.hh	types.hh
protein / StepWiseProteinPoseMinimizer.cc	optimization / AtomTreeMinimizer.hh
protein / StepWiseProteinPoseMinimizer.cc	io / silent / BinaryProteinSilentStruct.hh
protein / StepWiseProteinPoseMinimizer.cc	conformation / Conformation.hh
protein / StepWiseProteinPoseMinimizer.cc	scoring / constraints / ConstraintSet.hh
protein / StepWiseProteinPoseMinimizer.cc	scoring / Energies.hh
protein / StepWiseProteinPoseMinimizer.cc	scoring / EnergyGraph.hh
protein / StepWiseProteinPoseMinimizer.cc	optimization / MinimizerOptions.hh
protein / StepWiseProteinPoseMinimizer.cc	kinematics / MoveMap.hh
protein / StepWiseProteinPoseMinimizer.cc	pose / Pose.hh
protein / StepWiseProteinPoseMinimizer.cc	scoring / ScoreFunction.hh
protein / StepWiseProteinPoseMinimizer.cc	scoring / ScoreFunctionFactory.hh
protein / StepWiseProteinPoseMinimizer.cc	io / silent / SilentFileData.fwd.hh
protein / StepWiseProteinPoseMinimizer.cc	io / silent / SilentFileData.hh
protein / StepWiseProteinPoseMinimizer.cc	import_pose / pose_stream / SilentFilePoseInputStream.hh
protein / StepWiseProteinPoseMinimizer.cc	id / TorsionID.hh
protein / StepWiseProteinPoseMinimizer.cc	types.hh
protein / StepWiseProteinPoseMinimizer.cc	scoring / constraints / util.hh
protein / StepWiseProteinPoseMinimizer.cc	pose / util.hh
protein / StepWiseProteinPoseMinimizer.cc	conformation / util.hh
protein / StepWiseProteinPoseMinimizer.hh	kinematics / MoveMap.fwd.hh
protein / StepWiseProteinPoseMinimizer.hh	pose / Pose.fwd.hh
protein / StepWiseProteinPoseMinimizer.hh	scoring / ScoreFunction.fwd.hh
protein / StepWiseProteinPoseMinimizer.hh	io / silent / SilentFileData.fwd.hh
protein / StepWiseProteinPoseMinimizer.hh	types.hh
protein / StepWiseProteinPoseSetup.cc	pose / annotated_sequence.hh
protein / StepWiseProteinPoseSetup.cc	id / AtomID.hh
protein / StepWiseProteinPoseSetup.cc	chemical / ChemicalManager.hh
protein / StepWiseProteinPoseSetup.cc	import_pose / import_pose.hh
protein / StepWiseProteinPoseSetup.cc	pose / Pose.hh
protein / StepWiseProteinPoseSetup.cc	conformation / Residue.hh
protein / StepWiseProteinPoseSetup.cc	chemical / ResidueTypeSet.hh
protein / StepWiseProteinPoseSetup.cc	io / silent / SilentFileData.hh
protein / StepWiseProteinPoseSetup.cc	types.hh
protein / StepWiseProteinPoseSetup.cc	pose / util.hh
protein / StepWiseProteinPoseSetup.hh	pose / Pose.fwd.hh
protein / StepWiseProteinPoseSetup.hh	chemical / ResidueTypeSet.fwd.hh
protein / StepWiseProteinPoseSetup.hh	types.hh
protein / StepWiseProteinPoseSetup.hh	chemical / VariantType.fwd.hh
protein / StepWiseProteinResidueSampler.cc	id / AtomID.hh
protein / StepWiseProteinResidueSampler.cc	id / DOF_ID.hh
protein / StepWiseProteinResidueSampler.cc	scoring / Energies.hh
protein / StepWiseProteinResidueSampler.cc	scoring / EnergyGraph.hh
protein / StepWiseProteinResidueSampler.cc	kinematics / Jump.hh
protein / StepWiseProteinResidueSampler.cc	id / NamedAtomID.hh
protein / StepWiseProteinResidueSampler.cc	pack / pack_rotamers.hh
protein / StepWiseProteinResidueSampler.cc	pack / task / PackerTask.hh
protein / StepWiseProteinResidueSampler.cc	pose / Pose.hh
protein / StepWiseProteinResidueSampler.cc	pack / rotamer_trials.hh
protein / StepWiseProteinResidueSampler.cc	kinematics / RT.hh
protein / StepWiseProteinResidueSampler.cc	scoring / ScoreFunction.hh
protein / StepWiseProteinResidueSampler.cc	scoring / ScoreFunctionFactory.hh
protein / StepWiseProteinResidueSampler.cc	io / silent / SilentFileData.fwd.hh
protein / StepWiseProteinResidueSampler.cc	io / silent / SilentFileData.hh
protein / StepWiseProteinResidueSampler.cc	pack / task / TaskFactory.hh
protein / StepWiseProteinResidueSampler.cc	pack / task / operation / TaskOperations.hh
protein / StepWiseProteinResidueSampler.cc	id / TorsionID.hh
protein / StepWiseProteinResidueSampler.cc	types.hh
protein / StepWiseProteinResidueSampler.cc	pose / util.hh
protein / StepWiseProteinResidueSampler.hh	kinematics / Jump.hh
protein / StepWiseProteinResidueSampler.hh	pack / task / PackerTask.fwd.hh
protein / StepWiseProteinResidueSampler.hh	pose / Pose.fwd.hh
protein / StepWiseProteinResidueSampler.hh	scoring / ScoreFunction.fwd.hh
protein / StepWiseProteinResidueSampler.hh	io / silent / SilentFileData.fwd.hh
protein / StepWiseProteinResidueSampler.hh	id / TorsionID.fwd.hh
protein / StepWiseProteinResidueSampler.hh	types.hh
protein / StepWiseProteinScreener.cc	pose / annotated_sequence.hh
protein / StepWiseProteinScreener.cc	id / AtomID.hh
protein / StepWiseProteinScreener.cc	chemical / ChemicalManager.hh
protein / StepWiseProteinScreener.cc	scoring / dssp / Dssp.hh
protein / StepWiseProteinScreener.cc	scoring / Energies.hh
protein / StepWiseProteinScreener.cc	kinematics / Jump.hh
protein / StepWiseProteinScreener.cc	pose / Pose.hh
protein / StepWiseProteinScreener.cc	io / silent / ProteinSilentStruct.hh
protein / StepWiseProteinScreener.cc	scoring / Ramachandran.hh
protein / StepWiseProteinScreener.cc	scoring / rms_util.tmpl.hh
protein / StepWiseProteinScreener.cc	scoring / ScoreFunction.hh
protein / StepWiseProteinScreener.cc	scoring / ScoreFunctionFactory.hh
protein / StepWiseProteinScreener.cc	scoring / ScoreType.hh
protein / StepWiseProteinScreener.cc	io / silent / SilentFileData.fwd.hh
protein / StepWiseProteinScreener.cc	io / silent / SilentFileData.hh
protein / StepWiseProteinScreener.cc	util / SwitchResidueTypeSet.hh
protein / StepWiseProteinScreener.cc	id / TorsionID.hh
protein / StepWiseProteinScreener.cc	types.hh
protein / StepWiseProteinScreener.cc	pose / util.hh
protein / StepWiseProteinScreener.hh	kinematics / FoldTree.fwd.hh
protein / StepWiseProteinScreener.hh	pose / Pose.fwd.hh
protein / StepWiseProteinScreener.hh	scoring / Ramachandran.hh
protein / StepWiseProteinScreener.hh	scoring / ScoreFunction.fwd.hh
protein / StepWiseProteinScreener.hh	id / TorsionID.fwd.hh
protein / StepWiseProteinScreener.hh	types.hh
protein / StepWiseProteinUtil.cc	id / AtomID.hh
protein / StepWiseProteinUtil.cc	id / AtomID_Map.hh
protein / StepWiseProteinUtil.cc	io / silent / BinaryProteinSilentStruct.hh
protein / StepWiseProteinUtil.cc	fragment / ConstantLengthFragSet.hh
protein / StepWiseProteinUtil.cc	fragment / FragData.hh
protein / StepWiseProteinUtil.cc	fragment / FragSet.hh
protein / StepWiseProteinUtil.cc	fragment / Frame.hh
protein / StepWiseProteinUtil.cc	fragment / FrameList.hh
protein / StepWiseProteinUtil.cc	id / NamedAtomID.hh
protein / StepWiseProteinUtil.cc	pose / Pose.hh
protein / StepWiseProteinUtil.cc	scoring / rms_util.hh
protein / StepWiseProteinUtil.cc	io / silent / SilentFileData.fwd.hh
protein / StepWiseProteinUtil.cc	io / silent / SilentFileData.hh
protein / StepWiseProteinUtil.cc	types.hh
protein / StepWiseProteinUtil.cc	pose / util.hh
protein / StepWiseProteinUtil.hh	id / AtomID.fwd.hh
protein / StepWiseProteinUtil.hh	id / AtomID_Map.fwd.hh
protein / StepWiseProteinUtil.hh	fragment / ConstantLengthFragSet.fwd.hh
protein / StepWiseProteinUtil.hh	pose / Pose.fwd.hh
protein / StepWiseProteinUtil.hh	io / silent / SilentFileData.hh
protein / StepWiseProteinUtil.hh	types.hh
StepWiseResidueSampler.cc	pose / Pose.hh
StepWiseResidueSampler.cc	scoring / rms_util.tmpl.hh
StepWiseResidueSampler.cc	scoring / ScoreFunction.hh
StepWiseResidueSampler.cc	scoring / ScoreFunctionFactory.hh
StepWiseResidueSampler.cc	io / silent / SilentFileData.fwd.hh
StepWiseResidueSampler.cc	io / silent / SilentFileData.hh
StepWiseResidueSampler.cc	pack / task / TaskFactory.hh
StepWiseResidueSampler.cc	pack / task / operation / TaskOperations.hh
StepWiseResidueSampler.cc	types.hh
StepWiseResidueSampler.hh	pose / Pose.fwd.hh
StepWiseResidueSampler.hh	scoring / ScoreFunction.fwd.hh
StepWiseResidueSampler.hh	io / silent / SilentFileData.fwd.hh
StepWiseResidueSampler.hh	types.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	id / AtomID.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	chemical / AtomType.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	io / silent / BinaryRNASilentStruct.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	chemical / ChemicalManager.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	id / DOF_ID.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	scoring / Energies.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	scoring / EnergyGraph.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	scoring / EnergyMap.fwd.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	scoring / EnergyMap.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	pack / pack_rotamers.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	pack / task / PackerTask.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	pose / Pose.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	io / pdb / pose_io.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	conformation / Residue.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	conformation / ResidueFactory.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	chemical / ResidueTypeSet.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	scoring / rms_util.tmpl.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	scoring / rna / RNA_FittedTorsionInfo.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	scoring / rna / RNA_Util.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	pack / rotamer_trials.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	scoring / ScoreFunction.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	scoring / ScoreFunctionFactory.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	scoring / ScoreType.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	io / silent / SilentFileData.fwd.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	io / silent / SilentFileData.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	pack / task / TaskFactory.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	pack / task / operation / TaskOperations.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	id / TorsionID.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	types.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	chemical / util.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	pose / util.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.cc	chemical / VariantType.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.hh	pack / task / PackerTask.fwd.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.hh	pose / Pose.fwd.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.hh	conformation / Residue.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.hh	scoring / ScoreFunction.fwd.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.hh	io / silent / SilentFileData.fwd.hh
rna / StepWiseRNA_AnalyticalLoopCloseSampler.hh	types.hh
rna / StepWiseRNA_Base_Sugar_Rotamer.cc	pose / Pose.hh
rna / StepWiseRNA_Base_Sugar_Rotamer.cc	scoring / rna / RNA_FittedTorsionInfo.hh
rna / StepWiseRNA_Base_Sugar_Rotamer.cc	scoring / rna / RNA_Util.hh
rna / StepWiseRNA_Base_Sugar_Rotamer.cc	id / TorsionID.hh
rna / StepWiseRNA_Base_Sugar_Rotamer.hh	pose / Pose.fwd.hh
rna / StepWiseRNA_Base_Sugar_Rotamer.hh	scoring / rna / RNA_FittedTorsionInfo.hh
rna / StepWiseRNA_Base_Sugar_Rotamer.hh	id / TorsionID.fwd.hh
rna / StepWiseRNA_Base_Sugar_Rotamer.hh	types.hh
rna / StepWiseRNA_BaseCentroidScreener.cc	kinematics / FoldTree.hh
rna / StepWiseRNA_BaseCentroidScreener.cc	pose / Pose.hh
rna / StepWiseRNA_BaseCentroidScreener.cc	conformation / Residue.hh
rna / StepWiseRNA_BaseCentroidScreener.cc	scoring / rna / RNA_CentroidInfo.hh
rna / StepWiseRNA_BaseCentroidScreener.cc	kinematics / Stub.hh
rna / StepWiseRNA_BaseCentroidScreener.cc	id / TorsionID.hh
rna / StepWiseRNA_BaseCentroidScreener.hh	pose / Pose.fwd.hh
rna / StepWiseRNA_BaseCentroidScreener.hh	scoring / rna / RNA_CentroidInfo.fwd.hh
rna / StepWiseRNA_BaseCentroidScreener.hh	kinematics / Stub.fwd.hh
rna / StepWiseRNA_BaseCentroidScreener.hh	types.hh
rna / StepWiseRNA_Classes.hh	pose / Pose.fwd.hh
rna / StepWiseRNA_Classes.hh	scoring / ScoreFunction.fwd.hh
rna / StepWiseRNA_Classes.hh	io / silent / SilentFileData.fwd.hh
rna / StepWiseRNA_Classes.hh	id / TorsionID.hh
rna / StepWiseRNA_Classes.hh	types.hh
rna / StepWiseRNA_Clusterer.cc	io / silent / BinaryRNASilentStruct.hh
rna / StepWiseRNA_Clusterer.cc	chemical / ChemicalManager.hh
rna / StepWiseRNA_Clusterer.cc	scoring / Energies.hh
rna / StepWiseRNA_Clusterer.cc	pose / Pose.hh
rna / StepWiseRNA_Clusterer.cc	io / pdb / pose_io.hh
rna / StepWiseRNA_Clusterer.cc	import_pose / pose_stream / PoseInputStream.fwd.hh
rna / StepWiseRNA_Clusterer.cc	import_pose / pose_stream / PoseInputStream.hh
rna / StepWiseRNA_Clusterer.cc	chemical / ResidueTypeSet.hh
rna / StepWiseRNA_Clusterer.cc	scoring / rms_util.hh
rna / StepWiseRNA_Clusterer.cc	scoring / rms_util.tmpl.hh
rna / StepWiseRNA_Clusterer.cc	scoring / ScoreFunction.hh
rna / StepWiseRNA_Clusterer.cc	scoring / ScoreFunctionFactory.hh
rna / StepWiseRNA_Clusterer.cc	io / silent / SilentFileData.fwd.hh
rna / StepWiseRNA_Clusterer.cc	io / silent / SilentFileData.hh
rna / StepWiseRNA_Clusterer.cc	import_pose / pose_stream / SilentFilePoseInputStream.hh
rna / StepWiseRNA_Clusterer.cc	io / silent / SilentStruct.hh
rna / StepWiseRNA_Clusterer.cc	types.hh
rna / StepWiseRNA_Clusterer.cc	pose / util.hh
rna / StepWiseRNA_Clusterer.hh	pose / Pose.fwd.hh
rna / StepWiseRNA_Clusterer.hh	pose / Pose.hh
rna / StepWiseRNA_Clusterer.hh	chemical / ResidueTypeSet.hh
rna / StepWiseRNA_Clusterer.hh	scoring / ScoreFunction.fwd.hh
rna / StepWiseRNA_Clusterer.hh	io / silent / SilentFileData.fwd.hh
rna / StepWiseRNA_Clusterer.hh	import_pose / pose_stream / SilentFilePoseInputStream.fwd.hh
rna / StepWiseRNA_Clusterer.hh	io / silent / SilentStruct.fwd.hh
rna / StepWiseRNA_Clusterer.hh	types.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	scoring / constraints / AtomPairConstraint.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	chemical / AtomType.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	chemical / ChemicalManager.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	scoring / constraints / ConstraintSet.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	scoring / constraints / FadeFunc.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	kinematics / FoldTree.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	scoring / constraints / Func.fwd.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	import_pose / import_pose.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	pose / Pose.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	import_pose / pose_stream / PoseInputStream.fwd.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	import_pose / pose_stream / PoseInputStream.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	conformation / Residue.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	chemical / ResidueTypeSet.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	scoring / rms_util.tmpl.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	scoring / rna / RNA_Util.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	import_pose / pose_stream / SilentFilePoseInputStream.fwd.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	import_pose / pose_stream / SilentFilePoseInputStream.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	id / TorsionID.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	types.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	pose / util.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	chemical / util.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	pose / util.tmpl.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	chemical / VariantType.hh
rna / StepWiseRNA_CombineLongLoopFilterer.hh	pose / Pose.fwd.hh
rna / StepWiseRNA_CombineLongLoopFilterer.hh	chemical / ResidueTypeSet.fwd.hh
rna / StepWiseRNA_CombineLongLoopFilterer.hh	import_pose / pose_stream / SilentFilePoseInputStream.fwd.hh
rna / StepWiseRNA_CombineLongLoopFilterer.hh	types.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	scoring / constraints / AngleConstraint.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	scoring / constraints / AtomPairConstraint.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	optimization / AtomTreeMinimizer.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	chemical / AtomType.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	io / silent / BinaryRNASilentStruct.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	chemical / ChemicalManager.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	scoring / constraints / ConstraintSet.fwd.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	scoring / constraints / ConstraintSet.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	scoring / Energies.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	scoring / EnergyMap.fwd.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	scoring / EnergyMap.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	optimization / MinimizerOptions.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	pack / pack_rotamers.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	pack / task / PackerTask.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	pose / Pose.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	io / pdb / pose_io.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	conformation / Residue.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	conformation / ResidueFactory.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	chemical / ResidueTypeSet.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	scoring / rms_util.tmpl.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	scoring / rna / RNA_FittedTorsionInfo.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	scoring / rna / RNA_TorsionPotential.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	scoring / rna / RNA_Util.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	pack / rotamer_trials.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	scoring / ScoreFunction.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	scoring / ScoreFunctionFactory.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	io / silent / SilentFileData.fwd.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	io / silent / SilentFileData.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	pack / task / TaskFactory.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	id / TorsionID.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	types.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	scoring / constraints / util.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	chemical / util.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.cc	chemical / VariantType.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.hh	chemical / AA.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.hh	scoring / constraints / ConstraintSet.fwd.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.hh	scoring / constraints / ConstraintSet.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.hh	kinematics / FoldTree.fwd.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.hh	kinematics / FoldTree.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.hh	kinematics / MoveMap.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.hh	pose / Pose.fwd.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.hh	pose / Pose.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.hh	conformation / Residue.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.hh	io / silent / RNA_SilentStruct.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.hh	scoring / rna / RNA_Util.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.hh	scoring / ScoreFunction.fwd.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.hh	io / silent / SilentFileData.hh
rna / StepWiseRNA_FloatingBase_Sampler_Util.hh	types.hh
rna / StepWiseRNA_JobParameters.cc	kinematics / FoldTree.hh
rna / StepWiseRNA_JobParameters.cc	pose / Pose.hh
rna / StepWiseRNA_JobParameters.hh	kinematics / FoldTree.hh
rna / StepWiseRNA_JobParameters.hh	pose / Pose.fwd.hh
rna / StepWiseRNA_JobParameters.hh	types.hh
rna / StepWiseRNA_JobParameters_Setup.cc	scoring / constraints / AtomPairConstraint.hh
rna / StepWiseRNA_JobParameters_Setup.cc	chemical / ChemicalManager.hh
rna / StepWiseRNA_JobParameters_Setup.cc	scoring / constraints / ConstraintSet.hh
rna / StepWiseRNA_JobParameters_Setup.cc	scoring / constraints / FadeFunc.hh
rna / StepWiseRNA_JobParameters_Setup.cc	kinematics / FoldTree.hh
rna / StepWiseRNA_JobParameters_Setup.cc	scoring / constraints / Func.fwd.hh
rna / StepWiseRNA_JobParameters_Setup.cc	pose / Pose.hh
rna / StepWiseRNA_JobParameters_Setup.cc	io / pdb / pose_io.hh
rna / StepWiseRNA_JobParameters_Setup.cc	conformation / Residue.hh
rna / StepWiseRNA_JobParameters_Setup.cc	scoring / rms_util.tmpl.hh
rna / StepWiseRNA_JobParameters_Setup.cc	scoring / rna / RNA_Util.hh
rna / StepWiseRNA_JobParameters_Setup.cc	id / TorsionID.hh
rna / StepWiseRNA_JobParameters_Setup.cc	types.hh
rna / StepWiseRNA_JobParameters_Setup.cc	pose / util.hh
rna / StepWiseRNA_JobParameters_Setup.cc	chemical / util.hh
rna / StepWiseRNA_JobParameters_Setup.cc	chemical / VariantType.hh
rna / StepWiseRNA_JobParameters_Setup.hh	pose / Pose.fwd.hh
rna / StepWiseRNA_JobParameters_Setup.hh	chemical / ResidueTypeSet.fwd.hh
rna / StepWiseRNA_JobParameters_Setup.hh	types.hh
rna / StepWiseRNA_Minimizer.cc	id / AtomID.hh
rna / StepWiseRNA_Minimizer.cc	optimization / AtomTreeMinimizer.hh
rna / StepWiseRNA_Minimizer.cc	chemical / AtomType.hh
rna / StepWiseRNA_Minimizer.cc	io / silent / BinaryRNASilentStruct.hh
rna / StepWiseRNA_Minimizer.cc	conformation / Conformation.hh
rna / StepWiseRNA_Minimizer.cc	scoring / Energies.hh
rna / StepWiseRNA_Minimizer.cc	scoring / EnergyGraph.hh
rna / StepWiseRNA_Minimizer.cc	scoring / EnergyMap.fwd.hh
rna / StepWiseRNA_Minimizer.cc	scoring / EnergyMap.hh
rna / StepWiseRNA_Minimizer.cc	optimization / MinimizerOptions.hh
rna / StepWiseRNA_Minimizer.cc	pose / Pose.hh
rna / StepWiseRNA_Minimizer.cc	scoring / rms_util.tmpl.hh
rna / StepWiseRNA_Minimizer.cc	scoring / rna / RNA_TorsionPotential.hh
rna / StepWiseRNA_Minimizer.cc	scoring / rna / RNA_Util.hh
rna / StepWiseRNA_Minimizer.cc	scoring / ScoreFunction.hh
rna / StepWiseRNA_Minimizer.cc	scoring / ScoreFunctionFactory.hh
rna / StepWiseRNA_Minimizer.cc	scoring / ScoreType.hh
rna / StepWiseRNA_Minimizer.cc	io / silent / SilentFileData.fwd.hh
rna / StepWiseRNA_Minimizer.cc	io / silent / SilentFileData.hh
rna / StepWiseRNA_Minimizer.cc	id / TorsionID.hh
rna / StepWiseRNA_Minimizer.cc	types.hh
rna / StepWiseRNA_Minimizer.cc	chemical / util.hh
rna / StepWiseRNA_Minimizer.cc	pose / util.hh
rna / StepWiseRNA_Minimizer.cc	chemical / VariantType.hh
rna / StepWiseRNA_Minimizer.hh	pose / Pose.fwd.hh
rna / StepWiseRNA_Minimizer.hh	conformation / Residue.hh
rna / StepWiseRNA_Minimizer.hh	scoring / ScoreFunction.fwd.hh
rna / StepWiseRNA_Minimizer.hh	io / silent / SilentFileData.fwd.hh
rna / StepWiseRNA_Minimizer.hh	types.hh
rna / StepWiseRNA_OutputData.cc	scoring / constraints / AngleConstraint.hh
rna / StepWiseRNA_OutputData.cc	scoring / constraints / AtomPairConstraint.hh
rna / StepWiseRNA_OutputData.cc	optimization / AtomTreeMinimizer.hh
rna / StepWiseRNA_OutputData.cc	chemical / AtomType.hh
rna / StepWiseRNA_OutputData.cc	io / silent / BinaryRNASilentStruct.hh
rna / StepWiseRNA_OutputData.cc	chemical / ChemicalManager.hh
rna / StepWiseRNA_OutputData.cc	scoring / constraints / ConstraintSet.fwd.hh
rna / StepWiseRNA_OutputData.cc	scoring / constraints / ConstraintSet.hh
rna / StepWiseRNA_OutputData.cc	kinematics / MoveMap.hh
rna / StepWiseRNA_OutputData.cc	pack / pack_rotamers.hh
rna / StepWiseRNA_OutputData.cc	pack / task / PackerTask.hh
rna / StepWiseRNA_OutputData.cc	pose / Pose.hh
rna / StepWiseRNA_OutputData.cc	io / pdb / pose_io.hh
rna / StepWiseRNA_OutputData.cc	conformation / Residue.hh
rna / StepWiseRNA_OutputData.cc	conformation / ResidueFactory.hh
rna / StepWiseRNA_OutputData.cc	chemical / ResidueTypeSet.hh
rna / StepWiseRNA_OutputData.cc	scoring / rms_util.tmpl.hh
rna / StepWiseRNA_OutputData.cc	scoring / rna / RNA_BaseDoubletClasses.hh
rna / StepWiseRNA_OutputData.cc	scoring / rna / RNA_FittedTorsionInfo.hh
rna / StepWiseRNA_OutputData.cc	scoring / rna / RNA_Util.hh
rna / StepWiseRNA_OutputData.cc	pack / rotamer_trials.hh
rna / StepWiseRNA_OutputData.cc	scoring / ScoreFunction.hh
rna / StepWiseRNA_OutputData.cc	scoring / ScoreType.hh
rna / StepWiseRNA_OutputData.cc	io / silent / SilentFileData.fwd.hh
rna / StepWiseRNA_OutputData.cc	io / silent / SilentFileData.hh
rna / StepWiseRNA_OutputData.cc	pack / task / TaskFactory.hh
rna / StepWiseRNA_OutputData.cc	types.hh
rna / StepWiseRNA_OutputData.cc	scoring / constraints / util.hh
rna / StepWiseRNA_OutputData.cc	chemical / util.hh
rna / StepWiseRNA_OutputData.cc	chemical / VariantType.hh
rna / StepWiseRNA_OutputData.hh	chemical / AA.hh
rna / StepWiseRNA_OutputData.hh	io / silent / BinaryRNASilentStruct.hh
rna / StepWiseRNA_OutputData.hh	kinematics / FoldTree.fwd.hh
rna / StepWiseRNA_OutputData.hh	optimization / MinimizerOptions.hh
rna / StepWiseRNA_OutputData.hh	kinematics / MoveMap.hh
rna / StepWiseRNA_OutputData.hh	pose / Pose.fwd.hh
rna / StepWiseRNA_OutputData.hh	conformation / Residue.hh
rna / StepWiseRNA_OutputData.hh	io / silent / RNA_SilentStruct.hh
rna / StepWiseRNA_OutputData.hh	scoring / ScoreFunction.fwd.hh
rna / StepWiseRNA_OutputData.hh	io / silent / SilentFileData.hh
rna / StepWiseRNA_OutputData.hh	types.hh
rna / StepWiseRNA_PoseSetup.cc	pose / annotated_sequence.hh
rna / StepWiseRNA_PoseSetup.cc	scoring / constraints / AtomPairConstraint.hh
rna / StepWiseRNA_PoseSetup.cc	io / silent / BinaryRNASilentStruct.hh
rna / StepWiseRNA_PoseSetup.cc	chemical / ChemicalManager.hh
rna / StepWiseRNA_PoseSetup.cc	scoring / constraints / ConstraintSet.hh
rna / StepWiseRNA_PoseSetup.cc	scoring / constraints / FadeFunc.hh
rna / StepWiseRNA_PoseSetup.cc	kinematics / FoldTree.hh
rna / StepWiseRNA_PoseSetup.cc	scoring / constraints / Func.fwd.hh
rna / StepWiseRNA_PoseSetup.cc	import_pose / import_pose.hh
rna / StepWiseRNA_PoseSetup.cc	pose / Pose.hh
rna / StepWiseRNA_PoseSetup.cc	conformation / Residue.hh
rna / StepWiseRNA_PoseSetup.cc	conformation / ResidueFactory.hh
rna / StepWiseRNA_PoseSetup.cc	chemical / ResidueTypeSet.hh
rna / StepWiseRNA_PoseSetup.cc	scoring / rms_util.tmpl.hh
rna / StepWiseRNA_PoseSetup.cc	scoring / rna / RNA_Util.hh
rna / StepWiseRNA_PoseSetup.cc	id / TorsionID.hh
rna / StepWiseRNA_PoseSetup.cc	types.hh
rna / StepWiseRNA_PoseSetup.cc	pose / util.hh
rna / StepWiseRNA_PoseSetup.cc	chemical / util.hh
rna / StepWiseRNA_PoseSetup.cc	chemical / VariantType.hh
rna / StepWiseRNA_PoseSetup.hh	pose / Pose.fwd.hh
rna / StepWiseRNA_PoseSetup.hh	chemical / ResidueTypeSet.fwd.hh
rna / StepWiseRNA_PoseSetup.hh	types.hh
rna / StepWiseRNA_ResidueInfo.cc	chemical / AtomType.hh
rna / StepWiseRNA_ResidueInfo.cc	conformation / Conformation.hh
rna / StepWiseRNA_ResidueInfo.cc	pose / Pose.fwd.hh
rna / StepWiseRNA_ResidueInfo.cc	pose / Pose.hh
rna / StepWiseRNA_ResidueInfo.cc	conformation / Residue.hh
rna / StepWiseRNA_ResidueInfo.hh	pose / Pose.fwd.hh
rna / StepWiseRNA_ResidueInfo.hh	types.hh
rna / StepWiseRNA_ResidueSampler.cc	id / AtomID.hh
rna / StepWiseRNA_ResidueSampler.cc	chemical / AtomType.hh
rna / StepWiseRNA_ResidueSampler.cc	io / silent / BinaryRNASilentStruct.hh
rna / StepWiseRNA_ResidueSampler.cc	chemical / ChemicalManager.hh
rna / StepWiseRNA_ResidueSampler.cc	id / DOF_ID.hh
rna / StepWiseRNA_ResidueSampler.cc	scoring / Energies.hh
rna / StepWiseRNA_ResidueSampler.cc	scoring / EnergyGraph.hh
rna / StepWiseRNA_ResidueSampler.cc	scoring / EnergyMap.fwd.hh
rna / StepWiseRNA_ResidueSampler.cc	scoring / EnergyMap.hh
rna / StepWiseRNA_ResidueSampler.cc	pack / pack_rotamers.hh
rna / StepWiseRNA_ResidueSampler.cc	pack / task / PackerTask.hh
rna / StepWiseRNA_ResidueSampler.cc	pose / Pose.hh
rna / StepWiseRNA_ResidueSampler.cc	io / pdb / pose_io.hh
rna / StepWiseRNA_ResidueSampler.cc	conformation / Residue.hh
rna / StepWiseRNA_ResidueSampler.cc	conformation / ResidueFactory.hh
rna / StepWiseRNA_ResidueSampler.cc	chemical / ResidueTypeSet.hh
rna / StepWiseRNA_ResidueSampler.cc	scoring / rms_util.tmpl.hh
rna / StepWiseRNA_ResidueSampler.cc	scoring / rna / RNA_FittedTorsionInfo.hh
rna / StepWiseRNA_ResidueSampler.cc	scoring / rna / RNA_Util.hh
rna / StepWiseRNA_ResidueSampler.cc	pack / rotamer_trials.hh
rna / StepWiseRNA_ResidueSampler.cc	scoring / ScoreFunction.hh
rna / StepWiseRNA_ResidueSampler.cc	scoring / ScoreFunctionFactory.hh
rna / StepWiseRNA_ResidueSampler.cc	scoring / ScoreType.hh
rna / StepWiseRNA_ResidueSampler.cc	io / silent / SilentFileData.fwd.hh
rna / StepWiseRNA_ResidueSampler.cc	io / silent / SilentFileData.hh
rna / StepWiseRNA_ResidueSampler.cc	pack / task / TaskFactory.hh
rna / StepWiseRNA_ResidueSampler.cc	pack / task / operation / TaskOperations.hh
rna / StepWiseRNA_ResidueSampler.cc	id / TorsionID.hh
rna / StepWiseRNA_ResidueSampler.cc	types.hh
rna / StepWiseRNA_ResidueSampler.cc	chemical / util.hh
rna / StepWiseRNA_ResidueSampler.cc	pose / util.hh
rna / StepWiseRNA_ResidueSampler.cc	chemical / VariantType.hh
rna / StepWiseRNA_ResidueSampler.hh	pack / task / PackerTask.fwd.hh
rna / StepWiseRNA_ResidueSampler.hh	pose / Pose.fwd.hh
rna / StepWiseRNA_ResidueSampler.hh	conformation / Residue.hh
rna / StepWiseRNA_ResidueSampler.hh	scoring / ScoreFunction.fwd.hh
rna / StepWiseRNA_ResidueSampler.hh	io / silent / SilentFileData.fwd.hh
rna / StepWiseRNA_ResidueSampler.hh	types.hh
rna / StepWiseRNA_RotamerGenerator.cc	pose / Pose.hh
rna / StepWiseRNA_RotamerGenerator.cc	scoring / rna / RNA_FittedTorsionInfo.hh
rna / StepWiseRNA_RotamerGenerator.cc	scoring / rna / RNA_Util.hh
rna / StepWiseRNA_RotamerGenerator.cc	id / TorsionID.hh
rna / StepWiseRNA_RotamerGenerator.hh	pose / Pose.fwd.hh
rna / StepWiseRNA_RotamerGenerator.hh	id / TorsionID.fwd.hh
rna / StepWiseRNA_RotamerGenerator.hh	id / TorsionID.hh
rna / StepWiseRNA_RotamerGenerator.hh	types.hh
rna / StepWiseRNA_RotamerGenerator_Wrapper.cc	pose / Pose.hh
rna / StepWiseRNA_RotamerGenerator_Wrapper.cc	scoring / rna / RNA_Util.hh
rna / StepWiseRNA_RotamerGenerator_Wrapper.cc	id / TorsionID.hh
rna / StepWiseRNA_RotamerGenerator_Wrapper.hh	pose / Pose.fwd.hh
rna / StepWiseRNA_RotamerGenerator_Wrapper.hh	id / TorsionID.fwd.hh
rna / StepWiseRNA_RotamerGenerator_Wrapper.hh	id / TorsionID.hh
rna / StepWiseRNA_RotamerGenerator_Wrapper.hh	types.hh
rna / StepWiseRNA_Util.cc	scoring / constraints / AngleConstraint.hh
rna / StepWiseRNA_Util.cc	id / AtomID.hh
rna / StepWiseRNA_Util.cc	id / AtomID_Map.hh
rna / StepWiseRNA_Util.cc	scoring / constraints / AtomPairConstraint.hh
rna / StepWiseRNA_Util.cc	optimization / AtomTreeMinimizer.hh
rna / StepWiseRNA_Util.cc	chemical / AtomType.hh
rna / StepWiseRNA_Util.cc	io / silent / BinaryRNASilentStruct.hh
rna / StepWiseRNA_Util.cc	chemical / ChemicalManager.hh
rna / StepWiseRNA_Util.cc	scoring / constraints / ConstraintSet.fwd.hh
rna / StepWiseRNA_Util.cc	scoring / constraints / ConstraintSet.hh
rna / StepWiseRNA_Util.cc	import_pose / import_pose.hh
rna / StepWiseRNA_Util.cc	kinematics / MoveMap.hh
rna / StepWiseRNA_Util.cc	pack / pack_rotamers.hh
rna / StepWiseRNA_Util.cc	pack / task / PackerTask.hh
rna / StepWiseRNA_Util.cc	pose / Pose.hh
rna / StepWiseRNA_Util.cc	conformation / Residue.hh
rna / StepWiseRNA_Util.cc	conformation / ResidueFactory.hh
rna / StepWiseRNA_Util.cc	chemical / ResidueTypeSet.hh
rna / StepWiseRNA_Util.cc	scoring / rms_util.tmpl.hh
rna / StepWiseRNA_Util.cc	scoring / rna / RNA_BaseDoubletClasses.hh
rna / StepWiseRNA_Util.cc	scoring / rna / RNA_FittedTorsionInfo.hh
rna / StepWiseRNA_Util.cc	scoring / rna / RNA_Util.hh
rna / StepWiseRNA_Util.cc	pack / rotamer_trials.hh
rna / StepWiseRNA_Util.cc	scoring / ScoreFunction.hh
rna / StepWiseRNA_Util.cc	scoring / ScoreType.hh
rna / StepWiseRNA_Util.cc	io / silent / SilentFileData.fwd.hh
rna / StepWiseRNA_Util.cc	io / silent / SilentFileData.hh
rna / StepWiseRNA_Util.cc	pack / task / TaskFactory.hh
rna / StepWiseRNA_Util.cc	types.hh
rna / StepWiseRNA_Util.cc	scoring / constraints / util.hh
rna / StepWiseRNA_Util.cc	pose / util.hh
rna / StepWiseRNA_Util.cc	chemical / util.hh
rna / StepWiseRNA_Util.cc	pose / util.tmpl.hh
rna / StepWiseRNA_Util.cc	chemical / VariantType.hh
rna / StepWiseRNA_Util.hh	chemical / AA.hh
rna / StepWiseRNA_Util.hh	io / silent / BinaryRNASilentStruct.hh
rna / StepWiseRNA_Util.hh	kinematics / FoldTree.fwd.hh
rna / StepWiseRNA_Util.hh	optimization / MinimizerOptions.hh
rna / StepWiseRNA_Util.hh	kinematics / MoveMap.hh
rna / StepWiseRNA_Util.hh	pack / task / PackerTask.fwd.hh
rna / StepWiseRNA_Util.hh	pose / Pose.fwd.hh
rna / StepWiseRNA_Util.hh	conformation / Residue.hh
rna / StepWiseRNA_Util.hh	io / silent / RNA_SilentStruct.hh
rna / StepWiseRNA_Util.hh	scoring / ScoreFunction.fwd.hh
rna / StepWiseRNA_Util.hh	io / silent / SilentFileData.hh
rna / StepWiseRNA_Util.hh	types.hh
rna / StepWiseRNA_VDW_Bin_Screener.cc	id / AtomID_Map.hh
rna / StepWiseRNA_VDW_Bin_Screener.cc	chemical / AtomType.hh
rna / StepWiseRNA_VDW_Bin_Screener.cc	chemical / ChemicalManager.hh
rna / StepWiseRNA_VDW_Bin_Screener.cc	import_pose / import_pose.hh
rna / StepWiseRNA_VDW_Bin_Screener.cc	kinematics / MoveMap.hh
rna / StepWiseRNA_VDW_Bin_Screener.cc	pose / Pose.hh
rna / StepWiseRNA_VDW_Bin_Screener.cc	conformation / Residue.hh
rna / StepWiseRNA_VDW_Bin_Screener.cc	conformation / ResidueFactory.hh
rna / StepWiseRNA_VDW_Bin_Screener.cc	chemical / ResidueTypeSet.hh
rna / StepWiseRNA_VDW_Bin_Screener.cc	scoring / rms_util.tmpl.hh
rna / StepWiseRNA_VDW_Bin_Screener.cc	scoring / rna / RNA_Util.hh
rna / StepWiseRNA_VDW_Bin_Screener.cc	types.hh
rna / StepWiseRNA_VDW_Bin_Screener.cc	chemical / util.hh
rna / StepWiseRNA_VDW_Bin_Screener.cc	chemical / VariantType.hh
rna / StepWiseRNA_VDW_Bin_Screener.hh	chemical / AA.hh
rna / StepWiseRNA_VDW_Bin_Screener.hh	kinematics / FoldTree.fwd.hh
rna / StepWiseRNA_VDW_Bin_Screener.hh	pose / Pose.fwd.hh
rna / StepWiseRNA_VDW_Bin_Screener.hh	pose / Pose.hh
rna / StepWiseRNA_VDW_Bin_Screener.hh	conformation / Residue.hh
rna / StepWiseRNA_VDW_Bin_Screener.hh	types.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	scoring / constraints / AngleConstraint.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	scoring / constraints / AtomPairConstraint.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	optimization / AtomTreeMinimizer.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	chemical / AtomType.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	io / silent / BinaryRNASilentStruct.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	chemical / ChemicalManager.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	conformation / Conformation.fwd.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	scoring / constraints / ConstraintSet.fwd.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	scoring / constraints / ConstraintSet.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	scoring / Energies.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	scoring / EnergyMap.fwd.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	scoring / EnergyMap.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	optimization / MinimizerOptions.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	pack / pack_rotamers.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	pack / task / PackerTask.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	pose / Pose.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	io / pdb / pose_io.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	conformation / Residue.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	conformation / ResidueFactory.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	chemical / ResidueTypeSet.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	scoring / rms_util.tmpl.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	scoring / rna / RNA_FittedTorsionInfo.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	scoring / rna / RNA_TorsionPotential.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	scoring / rna / RNA_Util.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	pack / rotamer_trials.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	scoring / ScoreFunction.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	scoring / ScoreFunctionFactory.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	io / silent / SilentFileData.fwd.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	io / silent / SilentFileData.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	pack / task / TaskFactory.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	id / TorsionID.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	types.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	scoring / constraints / util.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	chemical / util.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	pose / util.hh
rna / StepWiseRNA_VirtualRiboseSampler.cc	chemical / VariantType.hh
rna / StepWiseRNA_VirtualRiboseSampler.hh	chemical / AA.hh
rna / StepWiseRNA_VirtualRiboseSampler.hh	scoring / constraints / ConstraintSet.fwd.hh
rna / StepWiseRNA_VirtualRiboseSampler.hh	scoring / constraints / ConstraintSet.hh
rna / StepWiseRNA_VirtualRiboseSampler.hh	kinematics / FoldTree.fwd.hh
rna / StepWiseRNA_VirtualRiboseSampler.hh	kinematics / FoldTree.hh
rna / StepWiseRNA_VirtualRiboseSampler.hh	kinematics / MoveMap.hh
rna / StepWiseRNA_VirtualRiboseSampler.hh	pose / Pose.fwd.hh
rna / StepWiseRNA_VirtualRiboseSampler.hh	pose / Pose.hh
rna / StepWiseRNA_VirtualRiboseSampler.hh	conformation / Residue.hh
rna / StepWiseRNA_VirtualRiboseSampler.hh	io / silent / RNA_SilentStruct.hh
rna / StepWiseRNA_VirtualRiboseSampler.hh	scoring / rna / RNA_Util.hh
rna / StepWiseRNA_VirtualRiboseSampler.hh	scoring / ScoreFunction.fwd.hh
rna / StepWiseRNA_VirtualRiboseSampler.hh	io / silent / SilentFileData.hh
rna / StepWiseRNA_VirtualRiboseSampler.hh	types.hh
StepWiseScreener.cc	pose / annotated_sequence.hh
StepWiseScreener.cc	id / AtomID.hh
StepWiseScreener.cc	chemical / ChemicalManager.hh
StepWiseScreener.cc	scoring / dssp / Dssp.hh
StepWiseScreener.cc	scoring / Energies.hh
StepWiseScreener.cc	kinematics / Jump.hh
StepWiseScreener.cc	pose / Pose.hh
StepWiseScreener.cc	io / silent / ProteinSilentStruct.hh
StepWiseScreener.cc	scoring / Ramachandran.hh
StepWiseScreener.cc	scoring / rms_util.tmpl.hh
StepWiseScreener.cc	scoring / ScoreFunction.hh
StepWiseScreener.cc	scoring / ScoreFunctionFactory.hh
StepWiseScreener.cc	scoring / ScoreType.hh
StepWiseScreener.cc	io / silent / SilentFileData.fwd.hh
StepWiseScreener.cc	io / silent / SilentFileData.hh
StepWiseScreener.cc	util / SwitchResidueTypeSet.hh
StepWiseScreener.cc	types.hh
StepWiseScreener.cc	pose / util.hh
StepWiseScreener.hh	kinematics / FoldTree.fwd.hh
StepWiseScreener.hh	pose / Pose.fwd.hh
StepWiseScreener.hh	scoring / Ramachandran.hh
StepWiseScreener.hh	scoring / ScoreFunction.fwd.hh
StepWiseScreener.hh	types.hh
StepWiseUtil.cc	id / AtomID.hh
StepWiseUtil.cc	id / AtomID_Map.hh
StepWiseUtil.cc	conformation / Conformation.hh
StepWiseUtil.cc	scoring / constraints / ConstraintSet.hh
StepWiseUtil.cc	kinematics / MoveMap.hh
StepWiseUtil.cc	pose / Pose.hh
StepWiseUtil.cc	conformation / Residue.hh
StepWiseUtil.cc	chemical / ResidueTypeSet.hh
StepWiseUtil.cc	scoring / rna / RNA_CentroidInfo.hh
StepWiseUtil.cc	scoring / rna / RNA_Util.hh
StepWiseUtil.cc	scoring / ScoreFunction.hh
StepWiseUtil.cc	id / SequenceMapping.hh
StepWiseUtil.cc	types.hh
StepWiseUtil.cc	pose / util.hh
StepWiseUtil.cc	pose / util.tmpl.hh
StepWiseUtil.cc	chemical / VariantType.hh
StepWiseUtil.hh	id / AtomID.fwd.hh
StepWiseUtil.hh	id / AtomID_Map.fwd.hh
StepWiseUtil.hh	scoring / constraints / ConstraintSet.fwd.hh
StepWiseUtil.hh	kinematics / FoldTree.fwd.hh
StepWiseUtil.hh	kinematics / MoveMap.fwd.hh
StepWiseUtil.hh	pose / Pose.fwd.hh
StepWiseUtil.hh	io / silent / RNA_SilentStruct.hh
StepWiseUtil.hh	scoring / ScoreFunction.fwd.hh
StepWiseUtil.hh	types.hh
monte_carlo / SubToFullInfo.cc	pose / datacache / CacheableDataType.hh
monte_carlo / SubToFullInfo.cc	pose / Pose.hh
monte_carlo / SubToFullInfo.hh	pose / Pose.fwd.hh
monte_carlo / SubToFullInfo.hh	types.hh