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rna → core Relation

File in src/protocols/rnaIncludes file in src/core
FullAtomRNA_Fragments.ccid / AtomID.hh
FullAtomRNA_Fragments.ccid / NamedAtomID.hh
FullAtomRNA_Fragments.ccpose / Pose.hh
FullAtomRNA_Fragments.ccconformation / Residue.hh
FullAtomRNA_Fragments.ccscoring / rna / RNA_Util.hh
FullAtomRNA_Fragments.ccid / TorsionID.hh
FullAtomRNA_Fragments.cctypes.hh
FullAtomRNA_Fragments.ccpose / util.hh
FullAtomRNA_Fragments.hhpose / Pose.fwd.hh
FullAtomRNA_Fragments.hhtypes.hh
MultipleDomainMover.ccid / AtomID.hh
MultipleDomainMover.ccconformation / Conformation.hh
MultipleDomainMover.cckinematics / FoldTree.hh
MultipleDomainMover.cckinematics / Jump.hh
MultipleDomainMover.ccid / NamedAtomID.hh
MultipleDomainMover.ccpose / Pose.hh
MultipleDomainMover.ccconformation / Residue.hh
MultipleDomainMover.cckinematics / Stub.hh
MultipleDomainMover.cctypes.hh
MultipleDomainMover.hhpose / Pose.fwd.hh
MultipleDomainMover.hhtypes.hh
RNA_BasePairClassifier.ccchemical / AA.hh
RNA_BasePairClassifier.ccscoring / hbonds / HBondOptions.hh
RNA_BasePairClassifier.ccscoring / hbonds / hbonds.hh
RNA_BasePairClassifier.ccscoring / hbonds / HBondSet.hh
RNA_BasePairClassifier.ccpose / Pose.hh
RNA_BasePairClassifier.ccconformation / Residue.hh
RNA_BasePairClassifier.ccscoring / rna / RNA_BaseDoubletClasses.hh
RNA_BasePairClassifier.ccscoring / rna / RNA_CentroidInfo.hh
RNA_BasePairClassifier.ccscoring / rna / RNA_ScoringInfo.hh
RNA_BasePairClassifier.ccscoring / rna / RNA_Util.hh
RNA_BasePairClassifier.ccscoring / ScoreFunction.hh
RNA_BasePairClassifier.ccscoring / ScoreFunctionFactory.hh
RNA_BasePairClassifier.hhpose / Pose.fwd.hh
RNA_BasePairClassifier.hhscoring / rna / RNA_BaseDoubletClasses.hh
RNA_ChunkLibrary.ccid / AtomID.hh
RNA_ChunkLibrary.ccchemical / ChemicalManager.hh
RNA_ChunkLibrary.cckinematics / FoldTree.hh
RNA_ChunkLibrary.ccimport_pose / import_pose.hh
RNA_ChunkLibrary.cckinematics / Jump.hh
RNA_ChunkLibrary.ccpose / MiniPose.fwd.hh
RNA_ChunkLibrary.ccpose / MiniPose.hh
RNA_ChunkLibrary.ccpose / Pose.hh
RNA_ChunkLibrary.ccconformation / Residue.hh
RNA_ChunkLibrary.ccchemical / ResidueType.hh
RNA_ChunkLibrary.ccscoring / rms_util.hh
RNA_ChunkLibrary.ccio / silent / SilentFileData.hh
RNA_ChunkLibrary.cckinematics / Stub.hh
RNA_ChunkLibrary.cctypes.hh
RNA_ChunkLibrary.ccpose / util.hh
RNA_ChunkLibrary.hhpose / MiniPose.fwd.hh
RNA_ChunkLibrary.hhpose / Pose.fwd.hh
RNA_ChunkLibrary.hhtypes.hh
RNA_DataReader.ccpose / Pose.hh
RNA_DataReader.ccscoring / rna / RNA_DataInfo.hh
RNA_DataReader.ccscoring / rna / RNA_ScoringInfo.hh
RNA_DataReader.ccscoring / rna / RNA_Util.hh
RNA_DataReader.cctypes.hh
RNA_DataReader.hhkinematics / Jump.hh
RNA_DataReader.hhpose / Pose.fwd.hh
RNA_DataReader.hhscoring / rna / RNA_DataInfo.hh
RNA_DataReader.hhtypes.hh
RNA_DeNovoProtocol.ccid / AtomID.hh
RNA_DeNovoProtocol.ccid / AtomID_Map.hh
RNA_DeNovoProtocol.ccio / silent / BinaryRNASilentStruct.hh
RNA_DeNovoProtocol.ccscoring / constraints / ConstraintSet.hh
RNA_DeNovoProtocol.ccid / DOF_ID.hh
RNA_DeNovoProtocol.ccscoring / Energies.hh
RNA_DeNovoProtocol.ccscoring / EnergyMap.hh
RNA_DeNovoProtocol.cckinematics / MoveMap.hh
RNA_DeNovoProtocol.ccpose / Pose.hh
RNA_DeNovoProtocol.ccio / pdb / pose_io.hh
RNA_DeNovoProtocol.ccconformation / Residue.hh
RNA_DeNovoProtocol.ccscoring / rms_util.hh
RNA_DeNovoProtocol.ccscoring / rna / RNA_BaseDoubletClasses.hh
RNA_DeNovoProtocol.ccscoring / rna / chemical_shift / RNA_ChemicalShiftPotential.hh
RNA_DeNovoProtocol.ccscoring / rna / RNA_LowResolutionPotential.hh
RNA_DeNovoProtocol.ccio / silent / RNA_SilentStruct.hh
RNA_DeNovoProtocol.ccscoring / rna / RNA_Util.hh
RNA_DeNovoProtocol.ccscoring / ScoreFunction.fwd.hh
RNA_DeNovoProtocol.ccscoring / ScoreFunction.hh
RNA_DeNovoProtocol.ccscoring / ScoreFunctionFactory.hh
RNA_DeNovoProtocol.ccscoring / ScoreType.hh
RNA_DeNovoProtocol.ccscoring / ScoringManager.hh
RNA_DeNovoProtocol.cckinematics / ShortestPathInFoldTree.hh
RNA_DeNovoProtocol.ccio / silent / SilentFileData.hh
RNA_DeNovoProtocol.cctypes.hh
RNA_DeNovoProtocol.hhscoring / constraints / ConstraintSet.fwd.hh
RNA_DeNovoProtocol.hhpose / Pose.fwd.hh
RNA_DeNovoProtocol.hhscoring / rna / RNA_LowResolutionPotential.hh
RNA_DeNovoProtocol.hhscoring / ScoreFunction.fwd.hh
RNA_DeNovoProtocol.hhio / silent / silent.fwd.hh
RNA_DeNovoProtocol.hhtypes.hh
RNA_FragmentMover.cckinematics / Jump.hh
RNA_FragmentMover.ccpose / Pose.hh
RNA_FragmentMover.ccconformation / Residue.hh
RNA_FragmentMover.cctypes.hh
RNA_FragmentMover.fwd.hhtypes.hh
RNA_FragmentMover.hhpose / Pose.fwd.hh
RNA_FragmentMover.hhtypes.hh
RNA_Fragments.cctypes.hh
RNA_Fragments.hhpose / Pose.fwd.hh
RNA_Fragments.hhtypes.hh
rna_fragments_classes.fwd.hhpose / Pose.fwd.hh
rna_fragments_classes.fwd.hhtypes.hh
RNA_FragmentsClasses.ccpose / Pose.hh
RNA_FragmentsClasses.ccscoring / rna / RNA_Util.hh
RNA_FragmentsClasses.cctypes.hh
RNA_FragmentsClasses.hhpose / Pose.fwd.hh
RNA_FragmentsClasses.hhtypes.hh
RNA_HelixAssembler.ccchemical / AA.hh
RNA_HelixAssembler.ccpose / annotated_sequence.hh
RNA_HelixAssembler.ccoptimization / AtomTreeMinimizer.hh
RNA_HelixAssembler.ccchemical / ChemicalManager.hh
RNA_HelixAssembler.ccscoring / constraints / ConstraintSet.hh
RNA_HelixAssembler.cckinematics / FoldTree.hh
RNA_HelixAssembler.cckinematics / Jump.hh
RNA_HelixAssembler.ccoptimization / MinimizerOptions.hh
RNA_HelixAssembler.cckinematics / MoveMap.hh
RNA_HelixAssembler.ccpose / Pose.hh
RNA_HelixAssembler.ccconformation / Residue.hh
RNA_HelixAssembler.ccconformation / ResidueFactory.hh
RNA_HelixAssembler.ccchemical / ResidueTypeSet.hh
RNA_HelixAssembler.ccscoring / rna / RNA_Util.hh
RNA_HelixAssembler.ccscoring / ScoreFunction.hh
RNA_HelixAssembler.ccscoring / ScoreFunctionFactory.hh
RNA_HelixAssembler.cctypes.hh
RNA_HelixAssembler.hhpose / Pose.fwd.hh
RNA_HelixAssembler.hhchemical / ResidueTypeSet.fwd.hh
RNA_HelixAssembler.hhscoring / ScoreFunction.fwd.hh
RNA_HelixAssembler.hhtypes.hh
RNA_IdealCoord.ccid / AtomID.hh
RNA_IdealCoord.ccchemical / ChemicalManager.hh
RNA_IdealCoord.ccconformation / Conformation.hh
RNA_IdealCoord.ccimport_pose / import_pose.hh
RNA_IdealCoord.ccpose / Pose.hh
RNA_IdealCoord.ccchemical / ResidueTypeSet.hh
RNA_IdealCoord.ccscoring / rna / RNA_FittedTorsionInfo.hh
RNA_IdealCoord.ccid / TorsionID.hh
RNA_IdealCoord.ccpose / util.hh
RNA_IdealCoord.hhid / AtomID.fwd.hh
RNA_IdealCoord.hhpose / Pose.fwd.hh
RNA_IdealCoord.hhpose / Pose.hh
RNA_IdealCoord.hhconformation / Residue.fwd.hh
RNA_IdealCoord.hhid / TorsionID.fwd.hh
RNA_IdealCoord.hhtypes.hh
RNA_JumpLibrary.cctypes.hh
RNA_JumpLibrary.hhkinematics / Jump.hh
RNA_JumpLibrary.hhtypes.hh
RNA_LoopCloser.cckinematics / tree / Atom.hh
RNA_LoopCloser.ccid / AtomID.hh
RNA_LoopCloser.ccid / AtomID_Map.hh
RNA_LoopCloser.cckinematics / AtomTree.hh
RNA_LoopCloser.ccoptimization / AtomTreeMinimizer.hh
RNA_LoopCloser.ccconformation / Conformation.hh
RNA_LoopCloser.ccscoring / constraints / Constraint.fwd.hh
RNA_LoopCloser.ccscoring / constraints / ConstraintSet.hh
RNA_LoopCloser.ccid / DOF_ID.hh
RNA_LoopCloser.cckinematics / FoldTree.hh
RNA_LoopCloser.ccoptimization / MinimizerOptions.hh
RNA_LoopCloser.cckinematics / MoveMap.hh
RNA_LoopCloser.ccpose / Pose.hh
RNA_LoopCloser.ccconformation / Residue.hh
RNA_LoopCloser.ccscoring / rna / RNA_Util.hh
RNA_LoopCloser.ccscoring / ScoreFunction.fwd.hh
RNA_LoopCloser.ccscoring / ScoreFunction.hh
RNA_LoopCloser.ccscoring / ScoreFunctionFactory.hh
RNA_LoopCloser.cctypes.hh
RNA_LoopCloser.ccpose / util.hh
RNA_LoopCloser.ccscoring / constraints / util.hh
RNA_LoopCloser.ccchemical / VariantType.hh
RNA_LoopCloser.hhpose / Pose.fwd.hh
RNA_LoopCloser.hhscoring / ScoreFunction.fwd.hh
RNA_LoopCloser.hhtypes.hh
RNA_MatchType.hhtypes.hh
RNA_Minimizer.ccid / AtomID.hh
RNA_Minimizer.ccid / AtomID_Map.hh
RNA_Minimizer.ccoptimization / AtomTreeMinimizer.hh
RNA_Minimizer.ccconformation / Conformation.hh
RNA_Minimizer.ccscoring / constraints / ConstraintSet.fwd.hh
RNA_Minimizer.ccscoring / constraints / ConstraintSet.hh
RNA_Minimizer.ccid / DOF_ID.hh
RNA_Minimizer.cckinematics / FoldTree.hh
RNA_Minimizer.ccscoring / constraints / HarmonicFunc.hh
RNA_Minimizer.ccoptimization / MinimizerOptions.hh
RNA_Minimizer.cckinematics / MoveMap.hh
RNA_Minimizer.ccid / NamedAtomID.hh
RNA_Minimizer.ccpack / pack_rotamers.hh
RNA_Minimizer.ccpack / task / PackerTask.hh
RNA_Minimizer.ccpose / Pose.hh
RNA_Minimizer.ccconformation / Residue.hh
RNA_Minimizer.ccscoring / rna / RNA_Util.hh
RNA_Minimizer.ccpack / rotamer_trials.hh
RNA_Minimizer.ccscoring / ScoreFunction.fwd.hh
RNA_Minimizer.ccscoring / ScoreFunction.hh
RNA_Minimizer.ccscoring / ScoreFunctionFactory.hh
RNA_Minimizer.ccscoring / ScoreType.hh
RNA_Minimizer.ccpack / task / TaskFactory.hh
RNA_Minimizer.ccid / TorsionID.hh
RNA_Minimizer.cctypes.hh
RNA_Minimizer.ccscoring / constraints / util.hh
RNA_Minimizer.ccpose / util.hh
RNA_Minimizer.hhkinematics / MoveMap.fwd.hh
RNA_Minimizer.hhpose / Pose.fwd.hh
RNA_Minimizer.hhscoring / ScoreFunction.hh
RNA_ProtocolUtil.ccpose / annotated_sequence.hh
RNA_ProtocolUtil.cckinematics / tree / Atom.hh
RNA_ProtocolUtil.ccid / AtomID.hh
RNA_ProtocolUtil.ccscoring / constraints / AtomPairConstraint.hh
RNA_ProtocolUtil.cckinematics / AtomTree.hh
RNA_ProtocolUtil.ccchemical / ChemicalManager.hh
RNA_ProtocolUtil.ccscoring / constraints / ConstraintSet.fwd.hh
RNA_ProtocolUtil.ccscoring / constraints / FadeFunc.hh
RNA_ProtocolUtil.ccscoring / constraints / HarmonicFunc.hh
RNA_ProtocolUtil.cckinematics / MoveMap.hh
RNA_ProtocolUtil.ccid / NamedAtomID.hh
RNA_ProtocolUtil.ccpose / Pose.hh
RNA_ProtocolUtil.ccconformation / Residue.hh
RNA_ProtocolUtil.ccscoring / rna / RNA_ScoringInfo.hh
RNA_ProtocolUtil.ccio / silent / RNA_SilentStruct.hh
RNA_ProtocolUtil.ccscoring / rna / RNA_Util.hh
RNA_ProtocolUtil.ccscoring / ScoreFunction.fwd.hh
RNA_ProtocolUtil.ccscoring / ScoreFunction.hh
RNA_ProtocolUtil.ccscoring / ScoreFunctionFactory.hh
RNA_ProtocolUtil.ccio / silent / SilentFileData.hh
RNA_ProtocolUtil.ccid / TorsionID.hh
RNA_ProtocolUtil.cctypes.hh
RNA_ProtocolUtil.ccpose / util.hh
RNA_ProtocolUtil.ccchemical / VariantType.hh
RNA_ProtocolUtil.hhkinematics / FoldTree.fwd.hh
RNA_ProtocolUtil.hhkinematics / MoveMap.fwd.hh
RNA_ProtocolUtil.hhpose / Pose.fwd.hh
RNA_ProtocolUtil.hhconformation / Residue.fwd.hh
RNA_ProtocolUtil.hhscoring / ScoreFunction.fwd.hh
RNA_ProtocolUtil.hhtypes.hh
RNA_Relaxer.ccscoring / constraints / ConstraintSet.hh
RNA_Relaxer.cckinematics / Jump.hh
RNA_Relaxer.ccpose / Pose.hh
RNA_Relaxer.ccscoring / rms_util.hh
RNA_Relaxer.ccscoring / ScoreFunction.fwd.hh
RNA_Relaxer.ccscoring / ScoreFunction.hh
RNA_Relaxer.ccscoring / ScoreFunctionFactory.hh
RNA_Relaxer.ccscoring / ScoreType.hh
RNA_Relaxer.cctypes.hh
RNA_Relaxer.hhpose / Pose.fwd.hh
RNA_Relaxer.hhtypes.hh
RNA_SecStructInfo.ccchemical / AA.hh
RNA_SecStructInfo.ccpose / datacache / CacheableDataType.hh
RNA_SecStructInfo.ccpose / Pose.hh
RNA_SecStructInfo.hhpose / Pose.fwd.hh
RNA_StructureParameters.cckinematics / tree / Atom.hh
RNA_StructureParameters.ccid / AtomID.hh
RNA_StructureParameters.cckinematics / AtomTree.hh
RNA_StructureParameters.ccscoring / constraints / ConstraintSet.fwd.hh
RNA_StructureParameters.cckinematics / FoldTree.hh
RNA_StructureParameters.ccid / NamedAtomID.hh
RNA_StructureParameters.ccpose / Pose.hh
RNA_StructureParameters.ccconformation / Residue.hh
RNA_StructureParameters.ccconformation / ResidueFactory.hh
RNA_StructureParameters.ccchemical / ResidueTypeSet.hh
RNA_StructureParameters.ccscoring / rna / RNA_DataInfo.hh
RNA_StructureParameters.ccscoring / rna / RNA_LowResolutionPotential.hh
RNA_StructureParameters.ccscoring / rna / RNA_ScoringInfo.hh
RNA_StructureParameters.ccscoring / rna / RNA_Util.hh
RNA_StructureParameters.ccscoring / ScoreType.hh
RNA_StructureParameters.ccid / TorsionID.hh
RNA_StructureParameters.cctypes.hh
RNA_StructureParameters.ccpose / util.hh
RNA_StructureParameters.ccchemical / VariantType.hh
RNA_StructureParameters.hhkinematics / FoldTree.fwd.hh
RNA_StructureParameters.hhkinematics / Jump.hh
RNA_StructureParameters.hhpose / Pose.fwd.hh
RNA_StructureParameters.hhtypes.hh
RNA_SuiteAssign.ccpose / Pose.hh
RNA_SuiteAssign.ccconformation / Residue.hh
RNA_SuiteAssign.ccscoring / rna / RNA_FittedTorsionInfo.hh
RNA_SuiteAssign.hhpose / Pose.fwd.hh
RNA_SuiteAssign.hhconformation / Residue.fwd.hh
RNA_SuiteAssign.hhtypes.hh
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