protein → core Relation

File in src/protocols/swa/protein	Includes file in src/core
MainChainTorsionClasses.cc	io / silent / BinaryProteinSilentStruct.hh
MainChainTorsionClasses.cc	id / NamedAtomID.hh
MainChainTorsionClasses.cc	pose / Pose.hh
MainChainTorsionClasses.cc	scoring / rms_util.hh
MainChainTorsionClasses.cc	scoring / rms_util.tmpl.hh
MainChainTorsionClasses.cc	io / silent / SilentFileData.hh
MainChainTorsionClasses.cc	types.hh
MainChainTorsionClasses.cc	pose / util.hh
MainChainTorsionClasses.cc	chemical / util.hh
MainChainTorsionClasses.hh	types.hh
MainChainTorsionSet.cc	io / silent / BinaryProteinSilentStruct.hh
MainChainTorsionSet.cc	types.hh
MainChainTorsionSet.hh	types.hh
StepWiseBetaAntiParallelJumpSampleGenerator.cc	kinematics / FoldTree.hh
StepWiseBetaAntiParallelJumpSampleGenerator.cc	kinematics / Jump.hh
StepWiseBetaAntiParallelJumpSampleGenerator.cc	pose / Pose.hh
StepWiseBetaAntiParallelJumpSampleGenerator.cc	types.hh
StepWiseBetaAntiParallelJumpSampleGenerator.hh	kinematics / Jump.hh
StepWiseBetaAntiParallelJumpSampleGenerator.hh	pose / Pose.fwd.hh
StepWiseBetaAntiParallelJumpSampleGenerator.hh	types.hh
StepWiseBetaAntiParallelUtil.cc	pose / annotated_sequence.hh
StepWiseBetaAntiParallelUtil.cc	io / silent / BinaryProteinSilentStruct.hh
StepWiseBetaAntiParallelUtil.cc	chemical / ChemicalManager.hh
StepWiseBetaAntiParallelUtil.cc	scoring / hbonds / HBondOptions.hh
StepWiseBetaAntiParallelUtil.cc	scoring / hbonds / hbonds.hh
StepWiseBetaAntiParallelUtil.cc	scoring / hbonds / HBondSet.hh
StepWiseBetaAntiParallelUtil.cc	import_pose / import_pose.hh
StepWiseBetaAntiParallelUtil.cc	id / NamedAtomID.hh
StepWiseBetaAntiParallelUtil.cc	pose / Pose.hh
StepWiseBetaAntiParallelUtil.cc	scoring / ScoreFunction.hh
StepWiseBetaAntiParallelUtil.cc	scoring / ScoreFunctionFactory.hh
StepWiseBetaAntiParallelUtil.cc	io / silent / SilentFileData.hh
StepWiseBetaAntiParallelUtil.cc	pose / util.hh
StepWiseBetaAntiParallelUtil.cc	chemical / VariantType.hh
StepWiseBetaAntiParallelUtil.hh	pose / Pose.fwd.hh
StepWiseBetaAntiParallelUtil.hh	kinematics / Stub.fwd.hh
StepWiseBetaAntiParallelUtil.hh	types.hh
StepWiseProteinCCD_Closer.cc	id / AtomID.hh
StepWiseProteinCCD_Closer.cc	kinematics / Jump.hh
StepWiseProteinCCD_Closer.cc	pose / Pose.hh
StepWiseProteinCCD_Closer.cc	chemical / ResidueType.hh
StepWiseProteinCCD_Closer.cc	id / TorsionID.hh
StepWiseProteinCCD_Closer.cc	types.hh
StepWiseProteinCCD_Closer.cc	chemical / VariantType.hh
StepWiseProteinCCD_Closer.hh	kinematics / MoveMap.hh
StepWiseProteinCCD_Closer.hh	pose / Pose.fwd.hh
StepWiseProteinCCD_Closer.hh	id / TorsionID.hh
StepWiseProteinFilterer.cc	scoring / Energies.hh
StepWiseProteinFilterer.cc	pose / Pose.hh
StepWiseProteinFilterer.cc	scoring / ScoreFunction.hh
StepWiseProteinFilterer.cc	scoring / ScoreFunctionFactory.hh
StepWiseProteinFilterer.cc	types.hh
StepWiseProteinFilterer.hh	pose / Pose.fwd.hh
StepWiseProteinFilterer.hh	types.hh
StepWiseProteinFragmentSampleGenerator.cc	fragment / ConstantLengthFragSet.hh
StepWiseProteinFragmentSampleGenerator.cc	fragment / FragSet.hh
StepWiseProteinFragmentSampleGenerator.cc	fragment / Frame.hh
StepWiseProteinFragmentSampleGenerator.cc	fragment / FrameList.hh
StepWiseProteinFragmentSampleGenerator.cc	types.hh
StepWiseProteinFragmentSampleGenerator.hh	fragment / Frame.fwd.hh
StepWiseProteinFragmentSampleGenerator.hh	pose / Pose.fwd.hh
StepWiseProteinFragmentSampleGenerator.hh	types.hh
StepWiseProteinJumpSampleGenerator.cc	kinematics / Jump.hh
StepWiseProteinJumpSampleGenerator.cc	pose / Pose.hh
StepWiseProteinJumpSampleGenerator.cc	types.hh
StepWiseProteinJumpSampleGenerator.hh	kinematics / Jump.hh
StepWiseProteinJumpSampleGenerator.hh	pose / Pose.fwd.hh
StepWiseProteinJumpSampleGenerator.hh	types.hh
StepWiseProteinLoopBridger.cc	kinematics / FoldTree.hh
StepWiseProteinLoopBridger.cc	kinematics / Jump.hh
StepWiseProteinLoopBridger.cc	pose / Pose.hh
StepWiseProteinLoopBridger.cc	scoring / Ramachandran.hh
StepWiseProteinLoopBridger.cc	conformation / Residue.hh
StepWiseProteinLoopBridger.cc	chemical / ResidueConnection.hh
StepWiseProteinLoopBridger.cc	io / silent / SilentFileData.fwd.hh
StepWiseProteinLoopBridger.cc	id / TorsionID.hh
StepWiseProteinLoopBridger.cc	types.hh
StepWiseProteinLoopBridger.cc	chemical / VariantType.hh
StepWiseProteinLoopBridger.hh	pose / Pose.fwd.hh
StepWiseProteinLoopBridger.hh	scoring / Ramachandran.hh
StepWiseProteinLoopBridger.hh	id / TorsionID.fwd.hh
StepWiseProteinMainChainSampleGenerator.cc	pose / Pose.hh
StepWiseProteinMainChainSampleGenerator.cc	id / TorsionID.hh
StepWiseProteinMainChainSampleGenerator.cc	types.hh
StepWiseProteinMainChainSampleGenerator.hh	pose / Pose.fwd.hh
StepWiseProteinMainChainSampleGenerator.hh	id / TorsionID.fwd.hh
StepWiseProteinMainChainSampleGenerator.hh	types.hh
StepWiseProteinPacker.cc	scoring / Energies.hh
StepWiseProteinPacker.cc	scoring / EnergyGraph.hh
StepWiseProteinPacker.cc	graph / Graph.hh
StepWiseProteinPacker.cc	kinematics / Jump.hh
StepWiseProteinPacker.cc	pack / pack_rotamers.hh
StepWiseProteinPacker.cc	pack / task / PackerTask.hh
StepWiseProteinPacker.cc	pose / Pose.hh
StepWiseProteinPacker.cc	conformation / Residue.hh
StepWiseProteinPacker.cc	pack / rotamer_trials.hh
StepWiseProteinPacker.cc	kinematics / RT.hh
StepWiseProteinPacker.cc	scoring / ScoreFunction.hh
StepWiseProteinPacker.cc	scoring / ScoreFunctionFactory.hh
StepWiseProteinPacker.cc	io / silent / SilentFileData.fwd.hh
StepWiseProteinPacker.cc	io / silent / SilentFileData.hh
StepWiseProteinPacker.cc	pack / task / TaskFactory.hh
StepWiseProteinPacker.cc	pack / task / operation / TaskOperations.hh
StepWiseProteinPacker.cc	types.hh
StepWiseProteinPacker.hh	pack / task / PackerTask.fwd.hh
StepWiseProteinPacker.hh	pose / Pose.fwd.hh
StepWiseProteinPacker.hh	scoring / ScoreFunction.fwd.hh
StepWiseProteinPacker.hh	io / silent / SilentFileData.fwd.hh
StepWiseProteinPacker.hh	types.hh
StepWiseProteinPoseMinimizer.cc	optimization / AtomTreeMinimizer.hh
StepWiseProteinPoseMinimizer.cc	io / silent / BinaryProteinSilentStruct.hh
StepWiseProteinPoseMinimizer.cc	conformation / Conformation.hh
StepWiseProteinPoseMinimizer.cc	scoring / constraints / ConstraintSet.hh
StepWiseProteinPoseMinimizer.cc	scoring / Energies.hh
StepWiseProteinPoseMinimizer.cc	scoring / EnergyGraph.hh
StepWiseProteinPoseMinimizer.cc	optimization / MinimizerOptions.hh
StepWiseProteinPoseMinimizer.cc	kinematics / MoveMap.hh
StepWiseProteinPoseMinimizer.cc	pose / Pose.hh
StepWiseProteinPoseMinimizer.cc	scoring / ScoreFunction.hh
StepWiseProteinPoseMinimizer.cc	scoring / ScoreFunctionFactory.hh
StepWiseProteinPoseMinimizer.cc	io / silent / SilentFileData.fwd.hh
StepWiseProteinPoseMinimizer.cc	io / silent / SilentFileData.hh
StepWiseProteinPoseMinimizer.cc	import_pose / pose_stream / SilentFilePoseInputStream.hh
StepWiseProteinPoseMinimizer.cc	id / TorsionID.hh
StepWiseProteinPoseMinimizer.cc	types.hh
StepWiseProteinPoseMinimizer.cc	scoring / constraints / util.hh
StepWiseProteinPoseMinimizer.cc	pose / util.hh
StepWiseProteinPoseMinimizer.cc	conformation / util.hh
StepWiseProteinPoseMinimizer.hh	kinematics / MoveMap.fwd.hh
StepWiseProteinPoseMinimizer.hh	pose / Pose.fwd.hh
StepWiseProteinPoseMinimizer.hh	scoring / ScoreFunction.fwd.hh
StepWiseProteinPoseMinimizer.hh	io / silent / SilentFileData.fwd.hh
StepWiseProteinPoseMinimizer.hh	types.hh
StepWiseProteinPoseSetup.cc	pose / annotated_sequence.hh
StepWiseProteinPoseSetup.cc	id / AtomID.hh
StepWiseProteinPoseSetup.cc	chemical / ChemicalManager.hh
StepWiseProteinPoseSetup.cc	import_pose / import_pose.hh
StepWiseProteinPoseSetup.cc	pose / Pose.hh
StepWiseProteinPoseSetup.cc	conformation / Residue.hh
StepWiseProteinPoseSetup.cc	chemical / ResidueTypeSet.hh
StepWiseProteinPoseSetup.cc	io / silent / SilentFileData.hh
StepWiseProteinPoseSetup.cc	types.hh
StepWiseProteinPoseSetup.cc	pose / util.hh
StepWiseProteinPoseSetup.hh	pose / Pose.fwd.hh
StepWiseProteinPoseSetup.hh	chemical / ResidueTypeSet.fwd.hh
StepWiseProteinPoseSetup.hh	types.hh
StepWiseProteinPoseSetup.hh	chemical / VariantType.fwd.hh
StepWiseProteinResidueSampler.cc	id / AtomID.hh
StepWiseProteinResidueSampler.cc	id / DOF_ID.hh
StepWiseProteinResidueSampler.cc	scoring / Energies.hh
StepWiseProteinResidueSampler.cc	scoring / EnergyGraph.hh
StepWiseProteinResidueSampler.cc	kinematics / Jump.hh
StepWiseProteinResidueSampler.cc	id / NamedAtomID.hh
StepWiseProteinResidueSampler.cc	pack / pack_rotamers.hh
StepWiseProteinResidueSampler.cc	pack / task / PackerTask.hh
StepWiseProteinResidueSampler.cc	pose / Pose.hh
StepWiseProteinResidueSampler.cc	pack / rotamer_trials.hh
StepWiseProteinResidueSampler.cc	kinematics / RT.hh
StepWiseProteinResidueSampler.cc	scoring / ScoreFunction.hh
StepWiseProteinResidueSampler.cc	scoring / ScoreFunctionFactory.hh
StepWiseProteinResidueSampler.cc	io / silent / SilentFileData.fwd.hh
StepWiseProteinResidueSampler.cc	io / silent / SilentFileData.hh
StepWiseProteinResidueSampler.cc	pack / task / TaskFactory.hh
StepWiseProteinResidueSampler.cc	pack / task / operation / TaskOperations.hh
StepWiseProteinResidueSampler.cc	id / TorsionID.hh
StepWiseProteinResidueSampler.cc	types.hh
StepWiseProteinResidueSampler.cc	pose / util.hh
StepWiseProteinResidueSampler.hh	kinematics / Jump.hh
StepWiseProteinResidueSampler.hh	pack / task / PackerTask.fwd.hh
StepWiseProteinResidueSampler.hh	pose / Pose.fwd.hh
StepWiseProteinResidueSampler.hh	scoring / ScoreFunction.fwd.hh
StepWiseProteinResidueSampler.hh	io / silent / SilentFileData.fwd.hh
StepWiseProteinResidueSampler.hh	id / TorsionID.fwd.hh
StepWiseProteinResidueSampler.hh	types.hh
StepWiseProteinScreener.cc	pose / annotated_sequence.hh
StepWiseProteinScreener.cc	id / AtomID.hh
StepWiseProteinScreener.cc	chemical / ChemicalManager.hh
StepWiseProteinScreener.cc	scoring / dssp / Dssp.hh
StepWiseProteinScreener.cc	scoring / Energies.hh
StepWiseProteinScreener.cc	kinematics / Jump.hh
StepWiseProteinScreener.cc	pose / Pose.hh
StepWiseProteinScreener.cc	io / silent / ProteinSilentStruct.hh
StepWiseProteinScreener.cc	scoring / Ramachandran.hh
StepWiseProteinScreener.cc	scoring / rms_util.tmpl.hh
StepWiseProteinScreener.cc	scoring / ScoreFunction.hh
StepWiseProteinScreener.cc	scoring / ScoreFunctionFactory.hh
StepWiseProteinScreener.cc	scoring / ScoreType.hh
StepWiseProteinScreener.cc	io / silent / SilentFileData.fwd.hh
StepWiseProteinScreener.cc	io / silent / SilentFileData.hh
StepWiseProteinScreener.cc	util / SwitchResidueTypeSet.hh
StepWiseProteinScreener.cc	id / TorsionID.hh
StepWiseProteinScreener.cc	types.hh
StepWiseProteinScreener.cc	pose / util.hh
StepWiseProteinScreener.hh	kinematics / FoldTree.fwd.hh
StepWiseProteinScreener.hh	pose / Pose.fwd.hh
StepWiseProteinScreener.hh	scoring / Ramachandran.hh
StepWiseProteinScreener.hh	scoring / ScoreFunction.fwd.hh
StepWiseProteinScreener.hh	id / TorsionID.fwd.hh
StepWiseProteinScreener.hh	types.hh
StepWiseProteinUtil.cc	id / AtomID.hh
StepWiseProteinUtil.cc	id / AtomID_Map.hh
StepWiseProteinUtil.cc	io / silent / BinaryProteinSilentStruct.hh
StepWiseProteinUtil.cc	fragment / ConstantLengthFragSet.hh
StepWiseProteinUtil.cc	fragment / FragData.hh
StepWiseProteinUtil.cc	fragment / FragSet.hh
StepWiseProteinUtil.cc	fragment / Frame.hh
StepWiseProteinUtil.cc	fragment / FrameList.hh
StepWiseProteinUtil.cc	id / NamedAtomID.hh
StepWiseProteinUtil.cc	pose / Pose.hh
StepWiseProteinUtil.cc	scoring / rms_util.hh
StepWiseProteinUtil.cc	io / silent / SilentFileData.fwd.hh
StepWiseProteinUtil.cc	io / silent / SilentFileData.hh
StepWiseProteinUtil.cc	types.hh
StepWiseProteinUtil.cc	pose / util.hh
StepWiseProteinUtil.hh	id / AtomID.fwd.hh
StepWiseProteinUtil.hh	id / AtomID_Map.fwd.hh
StepWiseProteinUtil.hh	fragment / ConstantLengthFragSet.fwd.hh
StepWiseProteinUtil.hh	pose / Pose.fwd.hh
StepWiseProteinUtil.hh	io / silent / SilentFileData.hh
StepWiseProteinUtil.hh	types.hh