constraints Directory Reference

Directory dependency graph for constraints:

Files
file	AmberPeriodicFunc.cc [code]
	Definition for periodic functions.
file	AmberPeriodicFunc.fwd.hh [code]
	forward declaration for Mixture functions
file	AmberPeriodicFunc.hh [code]
	Definition for a periodic function used in constraints.
file	AmbiguousConstraint.cc [code]
	contains declarations for a type of constraint that holds a number of constraints
file	AmbiguousConstraint.fwd.hh [code]
file	AmbiguousConstraint.hh [code]
	contains declarations for a type of constraint that holds multiple other
file	AmbiguousNMRConstraint.cc [code]
	contains declarations for a type of constraint that holds a number of constraints
file	AmbiguousNMRConstraint.fwd.hh [code]
file	AmbiguousNMRConstraint.hh [code]
	contains declarations for a type of constraint that holds multiple other constrains that belong to each other and are all evaluate at once
file	AmbiguousNMRDistanceConstraint.cc [code]
file	AmbiguousNMRDistanceConstraint.fwd.hh [code]
file	AmbiguousNMRDistanceConstraint.hh [code]
file	AngleConstraint.cc [code]
	Definition of AngularConstraints.
file	AngleConstraint.fwd.hh [code]
file	AngleConstraint.hh [code]
file	AtomPairConstraint.cc [code]
file	AtomPairConstraint.fwd.hh [code]
file	AtomPairConstraint.hh [code]
file	BackboneStubConstraint.cc [code]
file	BackboneStubConstraint.fwd.hh [code]
file	BackboneStubConstraint.hh [code]
file	BasicConstraintCreators.cc [code]
file	BasicConstraintCreators.hh [code]
file	BigBinConstraint.cc [code]
file	BigBinConstraint.hh [code]
file	BoundConstraint.cc [code]
file	BoundConstraint.fwd.hh [code]
file	BoundConstraint.hh [code]
file	CharmmPeriodicFunc.cc [code]
	Definition for periodic functions.
file	CharmmPeriodicFunc.hh [code]
	Definition for a periodic function used in constraints.
file	CircularGeneral1D_Func.cc [code]
	A general 1D function that can be initialized by FArray or from text file. There's stuff like this all over Rosetta.
file	CircularGeneral1D_Func.fwd.hh [code]
	forward declaration for CircularGeneral1D_Func class
file	CircularGeneral1D_Func.hh [code]
	A general 1D function that can be initialized by FArray or from text file. There's stuff like this all over Rosetta.
file	CircularHarmonicFunc.cc [code]
	Definition for functions used in definition of constraints.
file	CircularHarmonicFunc.fwd.hh [code]
	forward declaration for CircularHarmonicFunc class
file	CircularHarmonicFunc.hh [code]
file	CircularPowerFunc.cc [code]
file	CircularPowerFunc.fwd.hh [code]
	forward declaration for CircularPowerFunc class
file	CircularPowerFunc.hh [code]
	Definition for functions used in definition of constraints.
file	CircularSigmoidalFunc.cc [code]
	Definition for functions used in definition of constraints.
file	CircularSigmoidalFunc.fwd.hh [code]
	forward declaration for CircularSigmoidalFunc class
file	CircularSigmoidalFunc.hh [code]
file	ConstantConstraint.cc [code]
file	ConstantConstraint.hh [code]
file	ConstantFunc.cc [code]
	Definition for functions used in definition of constraints.
file	ConstantFunc.fwd.hh [code]
	forward declaration for Constant functions
file	ConstantFunc.hh [code]
	Definition for functions used in definition of constraints.
file	Constraint.cc [code]
file	Constraint.fwd.hh [code]
file	Constraint.hh [code]
	Base class definition for Constraint class hierarchy.
file	ConstraintCreator.cc [code]
file	ConstraintCreator.fwd.hh [code]
file	ConstraintCreator.hh [code]
	Base class for ConstraintCreators for the Constraint load-time factory registration scheme.
file	ConstraintEnergyContainer.cc [code]
file	ConstraintEnergyContainer.fwd.hh [code]
file	ConstraintEnergyContainer.hh [code]
file	ConstraintFactory.cc [code]
	Factory for creating various types of constraints.
file	ConstraintFactory.hh [code]
	Factory for creating various types of constraints.
file	ConstraintGraph.cc [code]
file	ConstraintGraph.fwd.hh [code]
	Constraints Energy Graph class forward declaration.
file	ConstraintGraph.hh [code]
file	ConstraintIO.cc [code]
file	ConstraintIO.hh [code]
file	Constraints.cc [code]
file	Constraints.fwd.hh [code]
file	Constraints.hh [code]
file	ConstraintsEnergy.cc [code]
file	ConstraintsEnergy.fwd.hh [code]
	Constraints Energy Method forward declaration.
file	ConstraintsEnergy.hh [code]
	Constraints Energy Method declaration.
file	ConstraintsEnergyCreator.hh [code]
	Declaration for the class that connects ConstraintsEnergy with the ScoringManager.
file	ConstraintSet.cc [code]
file	ConstraintSet.fwd.hh [code]
file	ConstraintSet.hh [code]
file	CoordinateConstraint.cc [code]
file	CoordinateConstraint.hh [code]
file	CountViolFunc.cc [code]
	Weighted constraint function that reweights other constraints by a constant scalar value.
file	CountViolFunc.hh [code]
file	CstMinimizationData.hh [code]
	A cacheable data wrapper for ConstraintsOPs for use in minimization.
file	DihedralConstraint.cc [code]
file	DihedralConstraint.fwd.hh [code]
file	DihedralConstraint.hh [code]
file	DihedralPairConstraint.cc [code]
file	DihedralPairConstraint.hh [code]
file	DistancePairConstraint.cc [code]
file	DistancePairConstraint.hh [code]
file	DOF_Constraint.fwd.hh [code]
file	DOF_Constraint.hh [code]
file	EtableFunc.cc [code]
file	EtableFunc.fwd.hh [code]
	forward declaration for Etable functions
file	EtableFunc.hh [code]
	Definition for functions used in definition of constraints.
file	FabConstraint.cc [code]
	This class is specific to antibodies and penalizes presence of non-cdr residues.
file	FabConstraint.fwd.hh [code]
	This class is specific to antibodies and penalizes presence of residues flanking.
file	FabConstraint.hh [code]
	This class is specific to antibodies and penalizes presence of residues flanking.
file	FadeFunc.cc [code]
file	FadeFunc.fwd.hh [code]
	forward declaration for Mixture functions
file	FadeFunc.hh [code]
	Definition for functions used in definition of constraints.
file	FlatHarmonicFunc.cc [code]
file	FlatHarmonicFunc.fwd.hh [code]
	forward declaration for Mixture functions
file	FlatHarmonicFunc.hh [code]
	Definition for functions used in definition of constraints.
file	FourPointsFunc.cc [code]
file	FourPointsFunc.fwd.hh [code]
file	FourPointsFunc.hh [code]
file	Func.cc [code]
	Definition for functions used in definition of constraints.
file	Func.fwd.hh [code]
file	Func.hh [code]
	Definition for functions used in definition of constraints.
file	FuncFactory.cc [code]
	Factory for creating various types of constraints.
file	FuncFactory.fwd.hh [code]
	Factory for creating various types of constraints.
file	FuncFactory.hh [code]
	Factory for creating various types of constraints.
file	GaussianFunc.cc [code]
file	GaussianFunc.fwd.hh [code]
	forward declaration for Gaussian functions
file	GaussianFunc.hh [code]
	Definition for functions used in definition of constraints.
file	HarmonicFunc.cc [code]
file	HarmonicFunc.fwd.hh [code]
	forward declaration for Mixture functions
file	HarmonicFunc.hh [code]
	Definition for functions used in definition of constraints.
file	IdentityFunc.cc [code]
file	IdentityFunc.fwd.hh [code]
	forward declaration for Identity function
file	IdentityFunc.hh [code]
	Definition for functions used in definition of constraints.
file	KarplusFunc.cc [code]
	Definition for functions used in definition of constraints.
file	KarplusFunc.fwd.hh [code]
file	KarplusFunc.hh [code]
file	KofNConstraint.cc [code]
	meta constraint where N constraints declared
file	KofNConstraint.fwd.hh [code]
	meta constraint where N constraints declared
file	KofNConstraint.hh [code]
	meta constraint where N constraints declared
file	LinearPenaltyFunction.cc [code]
file	LinearPenaltyFunction.hh [code]
	Linear penalty for values outside a certain range.
file	LocalCoordinateConstraint.cc [code]
file	LocalCoordinateConstraint.hh [code]
file	MinMultiHarmonicFunc.cc [code]
file	MinMultiHarmonicFunc.fwd.hh [code]
	forward declaration for Mixture functions
file	MinMultiHarmonicFunc.hh [code]
file	MixtureFunc.cc [code]
	Definition for functions used in definition of constraints.
file	MixtureFunc.fwd.hh [code]
	forward declaration for Mixture functions
file	MixtureFunc.hh [code]
	Definition for functions used in definition of constraints.
file	MultiConstraint.cc [code]
	contains declarations for a type of constraint that holds multiple other constrains that belong to each other and are all evaluate at once
file	MultiConstraint.fwd.hh [code]
file	MultiConstraint.hh [code]
	contains declarations for a type of constraint that holds multiple other constrains that belong to each other and are all evaluate at once
file	NamedAtomPairConstraint.cc [code]
file	NamedAtomPairConstraint.fwd.hh [code]
file	NamedAtomPairConstraint.hh [code]
file	NonResidueTypeConstraint.cc [code]
file	NonResidueTypeConstraint.fwd.hh [code]
file	NonResidueTypeConstraint.hh [code]
file	PeriodicFunc.cc [code]
	Definition for periodic functions.
file	PeriodicFunc.hh [code]
	Definition for a periodic function used in constraints.
file	ResidueTypeConstraint.cc [code]
file	ResidueTypeConstraint.fwd.hh [code]
file	ResidueTypeConstraint.hh [code]
file	ResidueTypeLinkingConstraint.cc [code]
file	ResidueTypeLinkingConstraint.fwd.hh [code]
	constrainting two residues to be the same type, based on
file	ResidueTypeLinkingConstraint.hh [code]
file	ScalarWeightedFunc.cc [code]
	Weighted constraint function that reweights other constraints by a constant scalar value.
file	ScalarWeightedFunc.fwd.hh [code]
file	ScalarWeightedFunc.hh [code]
	Weighted constraint function that encapsulates other constraints.
file	SequenceProfileConstraint.cc [code]
	This is a constraint that refers to a core::sequence::SequenceProfile? in order to influence the scoring of amino acid types based on multiple sequence alignments (i.e. for biasing amino acid choices during design). A note about the SequenceProfile::read_from_checkpoint function that is used to read in scores for amino acid types: the first line of the file will be ignored.
file	SequenceProfileConstraint.fwd.hh [code]
file	SequenceProfileConstraint.hh [code]
	This is a constraint that refers to a core::sequence::SequenceProfile? in order to influence the scoring of amino acid types based on multiple sequence alignments (i.e. for biasing amino acid choices during design).
file	SequenceProfileConstraintCreator.hh [code]
file	SigmoidFunc.cc [code]
file	SigmoidFunc.fwd.hh [code]
file	SigmoidFunc.hh [code]
	Definition for functions used in definition of constraints.
file	SiteConstraint.cc [code]
	This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
file	SiteConstraint.fwd.hh [code]
	This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
file	SiteConstraint.hh [code]
	This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
file	SiteConstraintResidues.cc [code]
	This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
file	SiteConstraintResidues.fwd.hh [code]
	This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
file	SiteConstraintResidues.hh [code]
	This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
file	SkipViolFunc.cc [code]
	Weighted constraint function that reweights other constraints by a constant scalar value.
file	SkipViolFunc.hh [code]
file	SoedingFunc.cc [code]
file	SoedingFunc.fwd.hh [code]
	forward declaration for SoedingFunc class.
file	SoedingFunc.hh [code]
	Definition for functions used in definition of constraints.
file	SOGFunc.cc [code]
file	SOGFunc.fwd.hh [code]
	forward declaration for SOG functions
file	SOGFunc.hh [code]
	Definition for functions used in definition of constraints.
file	SOGFunc_Impl.cc [code]
	Definition for functions used in definition of constraints.
file	SOGFunc_Impl.fwd.hh [code]
	forward declaration for SOG functions
file	SOGFunc_Impl.hh [code]
	Definition for functions used in definition of constraints.
file	SplineFunc.cc [code]
	Constraint function for looking up data in a histogram over which a spline is created.
file	SplineFunc.fwd.hh [code]
	forward declaration for SplineFunc
file	SplineFunc.hh [code]
	Constraint function for looking up data in a histogram over which a spline is created.
file	SquareWell2Func.cc [code]
file	SquareWell2Func.fwd.hh [code]
	forward declaration for Mixture functions
file	SquareWell2Func.hh [code]
	Definition for functions used in definition of constraints.
file	SquareWellFunc.cc [code]
file	SquareWellFunc.fwd.hh [code]
	forward declaration for Mixture functions
file	SquareWellFunc.hh [code]
	Definition for functions used in definition of constraints.
file	SumFunc.cc [code]
	Weighted constraint function that reweights other constraints by a constant scalar value.
file	SumFunc.fwd.hh [code]
file	SumFunc.hh [code]
	Sum of several individual constraints.
file	TopOutFunc.cc [code]
file	TopOutFunc.fwd.hh [code]
	Implementation of phenix "top-out" function.
file	TopOutFunc.hh [code]
	Implementation of phenix "top-out" function Similar to Geman-McClure: harmonic near 'x0_', flat past 'limit_'.
file	USOGFunc.cc [code]
file	USOGFunc.fwd.hh [code]
file	USOGFunc.hh [code]
file	util.cc [code]
	utility functions for defining constraints. Maybe better placed in src/numeric?
file	util.hh [code]
	utility functions for defining constraints. Maybe better placed in src/numeric?
file	XYZ_Func.cc [code]
file	XYZ_Func.fwd.hh [code]
file	XYZ_Func.hh [code]