- v -
- V
: protocols::sic_dock::Rose
- VallFragmentEval
: core::fragment::picking_old::vall::VallLibrarian
- VallFragmentEvalCOP
: core::fragment::picking_old::vall::VallLibrarian
- VallFragmentEvalOP
: core::fragment::picking_old::vall::VallLibrarian
- VallFragmentEvalOPs
: core::fragment::picking_old::vall::VallLibrarian
- VallFragmentGenCOP
: core::fragment::picking_old::vall::VallLibrarian
- VallFragmentGenOP
: core::fragment::picking_old::vall::VallLibrarian
- VallFragmentGenOPs
: core::fragment::picking_old::vall::VallLibrarian
- VallFragmentScore
: core::fragment::picking_old::vall::eval::ABEGOEval
, core::fragment::picking_old::vall::eval::EnergyEval
, core::fragment::picking_old::vall::eval::IdentityEval
, core::fragment::picking_old::vall::eval::VallFragmentEval
, core::fragment::picking_old::vall::VallLibrarian
- VallResidueConstIterator
: core::fragment::picking_old::vall::eval::IdentityEval
, core::fragment::picking_old::vall::eval::VallFragmentEval
, core::fragment::picking_old::vall::scores::VallFragmentScore
, core::fragment::picking_old::vall::VallLibrarian
, core::fragment::picking_old::vall::VallSection
, core::fragment::picking_old::vall::eval::ABEGOEval
, core::fragment::picking_old::vall::eval::EnergyEval
- VallResidueIterator
: core::fragment::picking_old::vall::gen::LengthGen
, core::fragment::picking_old::vall::gen::SecStructGen
, core::fragment::picking_old::vall::gen::VallFragmentGen
, core::fragment::picking_old::vall::VallLibrarian
, core::fragment::picking_old::vall::VallSection
- VallSectionConstIterator
: core::fragment::picking_old::vall::VallLibrarian
, core::fragment::picking_old::vall::VallLibrary
- VallSectionIterator
: core::fragment::picking_old::vall::VallLibrarian
, core::fragment::picking_old::vall::VallLibrary
- Value
: core::id::AtomID_Map< T >
, core::id::DOF_ID_Map< T >
- value_type
: core::id::AtomID_Map< T >
, core::id::DOF_ID_Map< T >
, core::import_pose::atom_tree_diffs::ScoreLessThanComparator
, core::io::silent::SilentFileData::iterator
, core::io::silent::SilentFileData::const_iterator
, core::pack::interaction_graph::AminoAcidNeighborSparseMatrix< T >
, protocols::toolbox::OP_const_iterator< const_iterator, SomeOP >
- values
: protocols::pack_daemon::VectorExpression
- ValueType
: core::fragment::FragCache< T >
, core::fragment::FragStore< T >
- VariableExpression
: protocols::pack_daemon::DynamicAggregateFunction
, protocols::pack_daemon::EntityFunc
- VariableExpressionCOP
: protocols::pack_daemon::IterativeVectorExpression
, protocols::pack_daemon::DynamicAggregateFunction
, protocols::pack_daemon::EntityFunc
- VariableExpressionOP
: protocols::pack_daemon::IterativeVectorExpression
, protocols::pack_daemon::DynamicAggregateFunction
, protocols::pack_daemon::EntityFunc
- VariableExpressions
: protocols::pack_daemon::VariableVectorExpression
- VarLengthBuild
: protocols::fldsgn::BluePrintBDR
, protocols::forge::remodel::RemodelMover
- VarLengthBuildAP
: protocols::forge::remodel::RemodelConstraintGenerator
- VarLengthBuildOP
: protocols::fldsgn::BluePrintBDR
, protocols::forge::remodel::RemodelMover
- VC
: protocols::sic_dock::Rose
- VCR
: protocols::sic_dock::Rose
- VdRdPhi
: protocols::simple_moves::BBGaussianMover
- Vec
: protocols::sic_dock::RigidScore
, protocols::sic_dock::SICFast
- Vec1Hash
: protocols::pack_daemon::PackDaemon
- Vec3
: core::scoring::sc::MolecularSurfaceCalculator
- VecInt
: protocols::fldsgn::topology::SheetSet
, protocols::fldsgn::topology::Sheet
- vecQueue
: protocols::viewer::triangleIterator
- VecReal
: protocols::fldsgn::topology::Sheet
, protocols::fldsgn::topology::SheetSet
- Vecs
: protocols::sic_dock::RigidScore
- VecSize
: protocols::fldsgn::MatchResidues
, protocols::fldsgn::topology::Sheet
, protocols::fldsgn::topology::StrandPairingSet
, protocols::fldsgn::topology::SheetSet
- VecTaskOP
: protocols::flxbb::CombinedTaskOperation
- Vector
: core::kinematics::Stub
, protocols::match::HitHasher
, protocols::match::HitNeighborFinder
, protocols::match::downstream::ActiveSiteGrid
, protocols::match::Matcher
, protocols::match::output::SameSequenceAndDSPositionGrouper
, protocols::simple_moves::BBGaussianMover
, protocols::fldsgn::topology::BetaAlphaBetaMotif
, protocols::match::BumpGrid
, protocols::match::output::DownstreamRMSEvaluator
, protocols::fldsgn::topology::Sheet
, protocols::fldsgn::topology::SS_Base
, protocols::fldsgn::topology::BB_Pos
, protocols::match::upstream::ProteinUpstreamBuilder
, protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential
, protocols::hotspot_hashing::StubGenerator
, protocols::match::VoxelSetIterator
, protocols::match::upstream::UpstreamResTypeGeometry
, protocols::fldsgn::potentials::sspot::NatbiasSheetPotential
, protocols::match::downstream::DownstreamBuilder
, protocols::match::Bool3DGrid
, protocols::fldsgn::topology::Loop
, protocols::flexpack::interaction_graph::OTFFlexbbNode
, protocols::match::downstream::TargetRotamerCoords
, protocols::match::MatchCounter
, protocols::match::output::WriteUpstreamCoordinateKinemage
, protocols::match::upstream::UpstreamBuilder
, core::kinematics::RT
, protocols::fldsgn::potentials::sspot::HSPairPotential
, protocols::simple_moves::MinimalRotamer
, protocols::match::Bool3DGridKinemageWriter
, protocols::match::upstream::ProteinBackboneBuildPoint
, protocols::fldsgn::topology::HelixPairing
, protocols::toolbox::match_enzdes_util::LigandConformer
, protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential
, protocols::fldsgn::topology::HSSTriplet
, protocols::match::OccupiedSpaceHash
, protocols::fldsgn::potentials::sspot::SSPairPotential
, core::conformation::symmetry::SymmData
, protocols::fldsgn::topology::Helix
, protocols::match::downstream::DownstreamAlgorithm
, core::kinematics::Jump
, protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
, protocols::match::MatcherTask
, protocols::simple_moves::GreenPacker
- Vectors
: core::scoring::methods::LK_BallEnergy
, core::scoring::methods::LKB_ResidueInfo
- VecVecSize
: protocols::fldsgn::MatchResidues
- VertexClass
: core::graph::UEEdge< V, E >
, core::graph::UEVertex< V, E >
, core::graph::UpperEdgeGraph< V, E >
- VertexVector
: core::graph::UpperEdgeGraph< V, E >
- VMatrix
: protocols::simple_moves::BBGaussianMover