- h -

• h : protocols::sic_dock::Rose
• h1_ : protocols::fldsgn::topology::HelixPairing , protocols::sic_dock::SICFast
• H1_t_name_ : protocols::antibody2::Ab_TemplateInfo
• H1_t_pose_ : protocols::antibody2::Ab_TemplateInfo
• h2_ : protocols::fldsgn::topology::HelixPairing , protocols::sic_dock::SICFast
• H2_t_name_ : protocols::antibody2::Ab_TemplateInfo
• H2_t_pose_ : protocols::antibody2::Ab_TemplateInfo
• H3_base_library : protocols::antibody::CDRH3Modeler
• H3_base_library_ : protocols::antibody::AntibodyModeler , protocols::antibody2::H3CterInsert
• h3_cter_insert_mover_ : protocols::antibody2::ModelCDRH3
• H3_filter_ : protocols::antibody2::H3RefineCCD , protocols::antibody2::RefineOneCDRLoop
• h3_filter_ : protocols::antibody2::AntibodyModelerProtocol
• H3_filter_ : protocols::antibody::CDRH3Modeler , protocols::antibody2::H3PerturbCCD
• h3_filter_tolerance_ : protocols::antibody2::AntibodyModelerProtocol
• h3_flank_ : protocols::antibody::CDRH3Modeler
• h3_fraction_ : protocols::antibody2::H3PerturbCCD
• h3_no_stem_graft_ : protocols::antibody2::GraftCDRLoopsProtocol
• h3_perturb_ccd_build_ : protocols::antibody2::ModelCDRH3
• h3_perturb_type_ : protocols::antibody2::AntibodyModelerProtocol
• h3_random_cut_ : protocols::antibody::CDRH3Modeler
• h3_refine_type_ : protocols::antibody2::AntibodyModelerProtocol
• h3_stem_not_graft_ : protocols::antibody2::GraftOneCDRLoop
• H3_t_name_ : protocols::antibody2::Ab_TemplateInfo
• H3_t_pose_ : protocols::antibody2::Ab_TemplateInfo
• H3_ter_library_filename_ : protocols::antibody2::H3CterInsert
• H5_prime_mode_ : core::scoring::rna::chemical_shift::RNA_ChemicalShiftPotential
• h_ : core::scoring::saxs::DistanceHistogram
• H_atom_id_ : protocols::match::upstream::UpstreamResTypeGeometry
• h_deriv : core::scoring::hbonds::HBondDerivs
• H_mult_ : protocols::frag_picker::scores::TalosSSSimilarity
• H_pos_ : protocols::match::upstream::ProteinBackboneBuildPoint
• HA_atom_id_ : protocols::match::upstream::UpstreamResTypeGeometry
• HA_pos_ : protocols::match::upstream::ProteinBackboneBuildPoint
• hackelec_die_ : core::scoring::methods::EnergyMethodOptions
• hackelec_max_dis_ : core::scoring::methods::EnergyMethodOptions
• hackelec_min_dis_ : core::scoring::methods::EnergyMethodOptions
• hackelec_no_dis_dep_die_ : core::scoring::methods::EnergyMethodOptions
• hairpin_list_ : core::scoring::Hairpins
• hairpins_ : core::scoring::SS_Killhairpins_Info
• half_bin_width_root_three_ : protocols::match::Bool3DGrid
• half_width_ : core::scoring::constraints::LinearPenaltyFunction
• halfdimprods_ : protocols::match::Bool3DGrid
• halfdimsizes_ : protocols::match::Bool3DGrid
• hamiltonians_ : protocols::canonical_sampling::HamiltonianExchange
• handedness_score_ : protocols::simple_filters::SheetFilter
• handedness_score_flag_ : core::scoring::SecondaryStructureWeights
• hard_crossover_ : core::scoring::etable::etrie::TrieCountPairGeneric
• hard_scorefxn_ : protocols::ligand_docking::LigandBaseProtocol
• harmonic_ca_cst_std_dev : protocols::simple_moves::ShakeStructureMover
• Haro_index_ : core::chemical::ResidueType
• has_bulge_ : protocols::fldsgn::topology::StrandPairing
• has_child_ : protocols::canonical_sampling::mc_convergence_checks::HPool_RMSD
• has_constraints : protocols::forge::remodel::LineObject
• has_coords_ : core::fragment::BBTorsionSRFD
• has_design_info_ : protocols::forge::remodel::RemodelData
• has_exocyclic_linkage_ : core::chemical::carbohydrates::CarbohydrateInfo
• has_finished_ : protocols::jd2::archive::Batch
• has_key_ : protocols::frag_picker::VallChunk
• has_ligand_ : protocols::forge::remodel::RemodelMover::instruction_flags
• has_path_ : protocols::motifs::Motif
• has_pseudobonds_ : core::scoring::trie::CPDataCorrespondence
• has_range1_lower_ : core::conformation::symmetry::SymDof
• has_range1_upper_ : core::conformation::symmetry::SymDof
• has_range2_lower_ : core::conformation::symmetry::SymDof
• has_range2_upper_ : core::conformation::symmetry::SymDof
• has_remark_ : protocols::motifs::Motif
• has_sc_orbitals_ : core::chemical::ResidueType
• has_silent_in_ : protocols::jd2::archive::Batch
• has_waters_ : core::scoring::methods::LKB_ResidueInfo
• hASA_to_score_ : core::pack::interaction_graph::SurfacePotential
• hash_ : protocols::loophash::LoopHashLibrary , protocols::loophash::LoopHashMap , protocols::match::HitNeighborFinder , protocols::match::MatchCounter , protocols::match::MatchOutputTracker , protocols::match::OccupiedSpaceHash
• hash_pose1_ : protocols::sic_dock::CBScore
• hash_size_ : core::pack::annealer::FASTERAnnealer
• hash_sizes_ : protocols::loophash::LoopHashLibrary
• hasher : core::kinematics::FoldTree , protocols::abinitio::IterativeBase
• hashin_fname_ : protocols::protein_interface_design::movers::HotspotHasherMover
• hashout_fname_ : protocols::protein_interface_design::movers::HotspotHasherMover
• hasInsertion : protocols::forge::remodel::WorkingRemodelSet
• have_contributed_deltaE_following_perturbation_ : core::pack::interaction_graph::FASTERNode , core::pack::interaction_graph::FASTEREdge
• have_cst_ : core::scoring::methods::CustomAtomPairEnergy
• have_not_committed_last_substitution_ : core::pack::interaction_graph::LinearMemoryInteractionGraph , core::pack::interaction_graph::SymmLinearMemoryInteractionGraph , core::pack::interaction_graph::SymmMinimalistInteractionGraph
• have_prepared_for_simA_ : core::pack::interaction_graph::SurfaceNode< V, E, G > , core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >
• have_prepared_once_for_FASTER_ : core::pack::interaction_graph::FASTERNode
• have_relaxed_since_neighbors_perturbation_ : core::pack::interaction_graph::FASTERNode
• hb_chem_type_ : core::scoring::hbonds::hbtrie::HBAtom
• hb_database : protocols::toolbox::pose_metric_calculators::NumberHBondsCalculator
• hb_database_ : core::scoring::geometric_solvation::ContextIndependentGeometricSolEnergy , core::scoring::geometric_solvation::WaterWeightGridSet , core::scoring::geometric_solvation::ExactOccludedHbondSolEnergy , core::scoring::geometric_solvation::GeometricSolEnergy , core::scoring::WaterAdductHBondPotential , protocols::dna::RotamerDNAHBondFilter , protocols::toolbox::pose_metric_calculators::SemiExplicitWaterUnsatisfiedPolarsCalculator
• HB_DHO_AngleList : protocols::sparta::PDB
• hb_filter : protocols::flexpep_docking::FlexPepDockingFlags
• HB_HOA_AngleList : protocols::sparta::PDB
• HBDistList : protocols::sparta::PDB
• HBEnergyList : protocols::sparta::PDB
• HBFadeInterval_lookup_ : core::scoring::hbonds::HBondDatabase
• HBFadeInterval_lookup_by_name_ : core::scoring::hbonds::HBondDatabase
• hbond_acceptor_limit_ : protocols::ligand_docking::HBondAcceptorFilter
• hbond_bb_pair_score_ : core::scoring::dssp::Dssp
• hbond_donor_limit_ : protocols::ligand_docking::HBondDonorFilter
• hbond_energy_threshold_ : protocols::protein_interface_design::movers::DesignMinimizeHbonds
• hbond_options_ : core::scoring::methods::EnergyMethodOptions , core::scoring::rna::RNA_Mg_Energy
• hbondoptions_ : core::scoring::geometric_solvation::WaterWeightGridSet , core::scoring::geometric_solvation::ExactOccludedHbondSolEnergy , core::scoring::WaterAdductHBondPotential , protocols::dna::RotamerDNAHBondFilter
• hbonds_ : core::scoring::hbonds::HBondSet
• HBPoly1D_lookup_ : core::scoring::hbonds::HBondDatabase
• HBPoly1D_lookup_by_name_ : core::scoring::hbonds::HBondDatabase
• hbs_post_pos_ : protocols::simple_moves::hbs::HbsPatcher
• hbs_pre_pos_ : protocols::simple_moves::hbs::HbsPatcher
• hcut_ : protocols::hybridization::DDomainParse , protocols::hybridization::HybridizeProtocol
• he : protocols::sic_dock::XfoxmScore
• header : core::io::pdb::FileData , protocols::wum::WorkUnitBase
• header_information_ : core::pose::PDBInfo
• heat_after_cycles_ : protocols::moves::MonteCarlo
• heat_structure_ : protocols::rna::RNA_DeNovoProtocol
• heavy_atom_limit_ : protocols::filters::HeavyAtomFilter , protocols::ligand_docking::HeavyAtomFilter
• heavy_chain : protocols::toolbox::task_operations::RestrictToCDRH3Loop
• heavyatom_has_polar_hydrogens_ : core::chemical::ResidueType
• heavyatom_is_an_acceptor_ : core::chemical::ResidueType
• hedge_archive_ : protocols::abinitio::IterativeBase
• height : core::scoring::sc::_PROBE
• helical_sigOffAxisR : protocols::rbsegment_relax::RBSegmentRelax
• helical_sigOffAxisT : protocols::rbsegment_relax::RBSegmentRelax
• helical_sigR : protocols::rbsegment_relax::RBSegmentRelax
• helical_sigT : protocols::rbsegment_relax::RBSegmentRelax
• helices_ : core::scoring::SS_Info , protocols::fldsgn::topology::SS_Info2
• helix2hss_ : protocols::fldsgn::topology::HSSTripletSet
• helix_ : protocols::fldsgn::topology::BetaAlphaBetaMotif , protocols::fldsgn::topology::HSSTriplet , protocols::nonlocal::HelixRotate
• helix_cap_dist_cutoff_ : protocols::features::helixAssembly::HelixBundleFeatures
• helix_cycle_ : protocols::fldsgn::topology::BetaAlphaBetaMotif
• helix_id_ : core::scoring::MembraneTopology , protocols::fldsgn::topology::SS_Info2
• helix_pairings_ : protocols::abinitio::TemplateJumpSetup , protocols::fldsgn::topology::HelixPairingSet , protocols::jd2::parser::BluePrint
• helix_size_ : protocols::features::helixAssembly::HelixBundleFeatures
• helixjump_pick_list_ : protocols::abinitio::Templates
• HelixMoveSet_ : protocols::rbsegment_relax::RBSegmentRelax
• help_ : protocols::forge::remodel::RemodelMover::instruction_flags
• hetatm_cst_weight_ : protocols::hybridization::FoldTreeHybridize , protocols::hybridization::HybridizeProtocol
• heterogen_names : core::io::pdb::FileData
• hfr_ : protocols::antibody::Antibody
• hfr_pose_ : protocols::antibody2::ModelCDRH3
• Hfr_t_name_ : protocols::antibody2::Ab_TemplateInfo
• hh : protocols::sic_dock::XfoxmScore
• hh_align_angle_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hh_align_angle_sigma2_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hh_align_angle_wts_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• HH_cutoff_ : core::scoring::NeighborList
• HH_cutoff_wide_ : core::scoring::NeighborList
• HH_helix_end : core::scoring::Helices
• HH_resnum : core::scoring::Helices
• hh_scores_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential , protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential
• hh_weight_ : protocols::fldsgn::potentials::SetSecStructEnergies
• hhpot_ : protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
• hi_poly_ : core::scoring::hackelec::HackElecEnergy
• hi_poly_end2_ : core::scoring::hackelec::HackElecEnergy
• hi_poly_end_ : core::scoring::hackelec::HackElecEnergy
• hi_poly_invwidth_ : core::scoring::hackelec::HackElecEnergy
• hi_poly_start2_ : core::scoring::hackelec::HackElecEnergy
• hi_poly_start_ : core::scoring::hackelec::HackElecEnergy
• hi_poly_width_ : core::scoring::hackelec::HackElecEnergy
• high_color_ : protocols::qsar::RenderGridsToKinemage
• high_cst_ : protocols::antibody::CDRH3Modeler , protocols::antibody2::AntibodyModelerProtocol , protocols::antibody2::CDRsMinPackMin , protocols::antibody2::H3RefineCCD , protocols::antibody2::RefineOneCDRLoop
• high_entropy_rms_cutoff_ : protocols::optimize_weights::PNatStructureOptEData
• high_move_temp_ : protocols::antibody2::H3RefineCCD
• high_res_angstroms_ : protocols::ligand_docking::LigandArea
• high_res_degrees_ : protocols::ligand_docking::LigandArea
• high_resolution_step_ : protocols::antibody2::SnugDock
• high_temp_ : core::pack::task::PackerTask_ , protocols::toolbox::task_operations::ModifyAnnealer
• higher_d77_pert_mode_ : protocols::ub_e2c::ubi_e2c_modeler
• highres_filter_ : protocols::docking::DockingProtocol
• highres_reference_energies_ : protocols::docking::DockingEnsemble
• highres_scorefxn_ : protocols::antibody::CDRH3Modeler , protocols::antibody::LoopRlxMover , protocols::antibody2::H3RefineCCD , protocols::seeded_abinitio::SegmentHybridizer
• hightemp : core::pack::annealer::SimAnnealerBase
• hightemp_ : core::pack::annealer::SimAnnealerBase
• highval_ : protocols::match::downstream::AtomGeometrySecMatchRPE
• hires_cut : core::scoring::electron_density::ElectronDensity
• hires_score_ : protocols::protein_interface_design::movers::LoopRemodel , protocols::protein_interface_design::movers::LoopMoverFromCommandLine
• hires_scorefxn_ : protocols::rna::RNA_DeNovoProtocol , protocols::protein_interface_design::movers::PlaceOnLoop
• hist_dist6_ : protocols::noesy_assign::FragsToAtomDist::DistanceRecord
• hist_dist_ : protocols::noesy_assign::FragsToAtomDist::DistanceRecord
• histogram_vector_ : core::scoring::orbitals::OrbitalsStatistics
• histograms_ : protocols::simple_moves::DOFHistogramRecorder
• history_ : protocols::hybridization::TemplateHistory
• hit_cacher_ : protocols::match::output::SameChiBinComboGrouper , protocols::match::output::SameSequenceGrouper
• hit_data_ : protocols::match::downstream::TargetRotamerCoords
• hit_hashes_ : protocols::match::HitHasher
• hit_score_cutoff_ : protocols::swa::StepWiseClusterer
• hits_ : protocols::match::Matcher
• hits_for_focused_geomcst_and_build_point_begin_ : protocols::match::downstream::SecondaryMatcherToDownstreamResidue
• hits_for_focused_geomcst_and_build_point_end_ : protocols::match::downstream::SecondaryMatcherToDownstreamResidue
• hits_for_focused_geomcst_end_ : protocols::match::downstream::SecondaryMatcherToDownstreamResidue
• hl : protocols::sic_dock::XfoxmScore
• hlevel_ : protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD
• HN_S2 : protocols::sparta::PDB
• ho2star_index_ : core::chemical::rna::RNA_ResidueType
• HOMO_Tab : protocols::sparta::Sparta::SpartaLib
• homoFileName : protocols::sparta::Sparta::SpartaLib
• homologs_ : protocols::loophash::BackboneDB
• host_chain_ : protocols::protein_interface_design::movers::PlaceOnLoop , protocols::protein_interface_design::movers::PlaceSimultaneouslyMover , protocols::protein_interface_design::movers::PlaceStubMover , protocols::protein_interface_design::movers::PlacementAuctionMover , protocols::protein_interface_design::movers::BestHotspotCstMover , protocols::protein_interface_design::filters::StubScoreFilter , protocols::protein_interface_design::movers::PlacementMinimizationMover , protocols::protein_interface_design::movers::SetAtomTree
• hotspot_filter : protocols::flexpep_docking::FlexPepDockingFlags
• hotspot_filter_ : protocols::protein_interface_design::movers::HotspotHasherMover
• hotspot_length_ : protocols::hotspot_hashing::HotspotStubSet
• hotspot_stub_set_ : protocols::protein_interface_design::movers::SetupHotspotConstraintsMover , protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMover
• hpairpot_ : protocols::fldsgn::potentials::SetSecStructEnergies
• hpairset_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential , protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential , protocols::fldsgn::filters::HelixPairingFilter
• hpairset_name_ : protocols::fldsgn::topology::HelixPairingSet
• hpatch_energy_alternate_state_assignment_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
• hpatch_energy_current_state_assignment_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
• HPATCH_SCORE_BIN_SIZE : core::pack::interaction_graph::SurfacePotential
• hpatch_score_min_last_100_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
• hpatch_score_min_recent_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
• hpatch_score_weight_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
• hphobe_ats_ : core::pack::interaction_graph::HPatchBackgroundNode< V, E, G >
• hphobe_ats_for_restype_group_ : core::pack::interaction_graph::HPatchNode< V, E, G >
• Hpol_index_ : core::chemical::ResidueType
• Hpos_apolar_ : core::chemical::ResidueType
• Hpos_polar_ : core::chemical::ResidueType
• Hpos_polar_sc_ : core::chemical::ResidueType
• hs1_dist_ : protocols::fldsgn::topology::HSSTriplet , protocols::fldsgn::topology::BetaAlphaBetaMotif
• hs1_orient_ : protocols::fldsgn::topology::HSSTriplet
• hs2_dist_ : protocols::fldsgn::topology::BetaAlphaBetaMotif , protocols::fldsgn::topology::HSSTriplet
• hs2_orient_ : protocols::fldsgn::topology::HSSTriplet
• hs_angle_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential , protocols::fldsgn::topology::BetaAlphaBetaMotif , protocols::fldsgn::topology::HSSTriplet
• hs_angle_sigma2_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hs_angle_wts_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hs_dist_ : protocols::fldsgn::topology::BetaAlphaBetaMotif , protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hs_dist_sigma2_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hs_dist_wts_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hs_dp_ : core::scoring::SecondaryStructurePotential
• hs_pair_weight_ : protocols::fldsgn::potentials::SetSecStructEnergies
• hs_scores_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hs_weight_ : protocols::fldsgn::potentials::SetSecStructEnergies
• hsheet_dist_ : protocols::fldsgn::topology::HSSTriplet
• hsheet_dist_repulsive_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hsheet_elev_angle_ : protocols::fldsgn::topology::BetaAlphaBetaMotif
• hspot_ : protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy , protocols::fldsgn::potentials::SetSecStructEnergies
• hss3set_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential , protocols::fldsgn::filters::HSSTripletFilter
• hss_triplets_ : protocols::fldsgn::topology::HSSTripletSet , protocols::jd2::parser::BluePrint
• ht_for_chitip_atoms_ : protocols::match::upstream::UpstreamResTypeGeometry
• hurry_ : protocols::protein_interface_design::movers::LoopRemodel , protocols::protein_interface_design::movers::PlaceStubMover , protocols::symmetric_docking::SymDockProtocol
• hybridization_ : core::chemical::AtomType , core::chemical::orbitals::OrbitalType
• hybridization_type2name_ : core::scoring::hbonds::HBondTypeManager
• hydrogen_interaction : core::scoring::etable::EtableParamsOnePair
• hydrogen_interaction_cutoff2_ : core::scoring::etable::BaseEtableEnergy< Derived > , core::scoring::etable::EtableEvaluator , core::scoring::etable::Etable , core::scoring::etable::MembEtable
• hydrophobic_ : protocols::simple_filters::InterfaceSasaFilter