Here is a list of all namespace members with links to the namespace documentation for each member:

- l -

• L : protocols::features
• l1 : protocols::antibody2
• l2 : protocols::antibody2
• L2DChiralData : protocols::simple_moves::chiral
• L2DChiralMap() : protocols::simple_moves::chiral
• l3 : protocols::antibody2
• L_chain_last_loop : protocols::antibody2
• L_CHIRALITY : protocols::simple_moves::chiral
• L_SS : protocols::comparative_modeling::features
• LargeFragWeightAP : protocols::topology_broker::weights
• LargeFragWeightCAP : protocols::topology_broker::weights
• LargeFragWeightCOP : protocols::topology_broker::weights
• LargeFragWeightOP : protocols::topology_broker::weights
• last_atomdesc : core::scoring::rna::chemical_shift
• last_DNA_aa : core::chemical
• LAST_STAGE : protocols::abinitio
• LayerDesignOperationOP : protocols::flxbb
• LazyInteractionGraphCOP : core::pack::interaction_graph
• LazyInteractionGraphOP : core::pack::interaction_graph
• LazySilentFileJobInputterOP : protocols::jd2
• LazySilentFilePoseInputStreamOP : core::import_pose::pose_stream
• left : core::sequence
• Length : core
• LENGTH_TLC() : protocols::unfolded_state_energy_calculator
• LengthEventCollectorAP : core::pose::datacache
• LengthEventCollectorCAP : core::pose::datacache
• LengthEventCollectorCOP : core::pose::datacache
• LengthEventCollectorOP : core::pose::datacache
• LengthGenAP : core::fragment::picking_old::vall::gen
• LengthGenCAP : core::fragment::picking_old::vall::gen
• LengthGenCOP : core::fragment::picking_old::vall::gen
• LengthGenOP : core::fragment::picking_old::vall::gen
• LengthSquared : core
• let_rigid_body_jumps_move() : protocols::rna
• LHRepulsiveRampCOP : protocols::antibody2
• LHRepulsiveRampLegacyCOP : protocols::antibody2
• LHRepulsiveRampLegacyOP : protocols::antibody2
• LHRepulsiveRampOP : protocols::antibody2
• LHSnugFitLegacyCOP : protocols::antibody2
• LHSnugFitLegacyOP : protocols::antibody2
• lib_full_path() : protocols::canonical_sampling::mc_convergence_checks
• ligand_area_tracer() : protocols::ligand_docking
• ligand_design_tracer() : protocols::ligand_docking
• ligand_scores_tracer() : protocols::ligand_docking
• LigandAreaCOP : protocols::ligand_docking
• LigandAreaCOPs : protocols::ligand_docking
• LigandAreaOP : protocols::ligand_docking
• LigandAreaOPs : protocols::ligand_docking
• LigandAreas : protocols::ligand_docking
• LigandBaseProtocolCOP : protocols::ligand_docking
• LigandBaseProtocolOP : protocols::ligand_docking
• LigandConformerBuilderCOP : protocols::match::downstream
• LigandConformerBuilderOP : protocols::match::downstream
• LigandConformerCOP : protocols::toolbox::match_enzdes_util
• LigandConformerOP : protocols::toolbox::match_enzdes_util
• LigandDesignCOP : protocols::ligand_docking
• LigandDesignOP : protocols::ligand_docking
• LigandDockMainOP : protocols::ligand_docking
• LigandDockProtocolCOP : protocols::ligand_docking
• LigandDockProtocolOP : protocols::ligand_docking
• LigandMotifSearchCOP : protocols::motifs
• LigandMotifSearchOP : protocols::motifs
• limit_chunk_size() : protocols::nonlocal
• limit_rotamer_set() : protocols::multistate_design
• LimitAromaChi2_RotamerSetOperationCOP : protocols::toolbox::task_operations
• LimitAromaChi2_RotamerSetOperationOP : protocols::toolbox::task_operations
• LimitAromaChi2OperationCOP : protocols::toolbox::task_operations
• LimitAromaChi2OperationOP : protocols::toolbox::task_operations
• LimitHitsPerRotamerFilterCOP : protocols::match::output
• LimitHitsPerRotamerFilterOP : protocols::match::output
• linear : protocols::canonical_sampling
• linear_chainbreak : core::scoring , protocols::forge::methods
• linear_interpolate() : core::scoring::constraints
• LinearChainbreakEnergyCreator_registrator : core
• linearize_fold_tree() : core::kinematics
• LinearMemoryHPatchInteractionGraph : core::pack::interaction_graph
• LinearMemoryHPatchInteractionGraphOP : core::pack::interaction_graph
• LinearMemoryInteractionGraphCOP : core::pack::interaction_graph
• LinearMemoryInteractionGraphOP : core::pack::interaction_graph
• LinearMemorySurfaceInteractionGraph : core::pack::interaction_graph
• LinearMemorySurfaceInteractionGraphOP : core::pack::interaction_graph
• LineMinimizationAlgorithmCOP : core::optimization
• LineMinimizationAlgorithmOP : core::optimization
• linker_count2score() : protocols::sic_dock
• LinkerScoreCOP : protocols::sic_dock
• LinkerScoreOP : protocols::sic_dock
• Links : core::kinematics
• list_amino_acid_options() : protocols::multistate_design
• lk_ball : core::scoring
• lk_ball_iso : core::scoring
• LK_BALL_ROTAMER_SET_INFO : core::conformation::RotamerSetCacheableDataType
• LK_BallEnergyCreator_registrator : core
• lk_costheta : core::scoring
• LK_CosThetaEnergyCreator_registrator : core
• lk_hack : core::scoring
• LK_hackCreator_registrator : core
• LK_MATCHING_WEIGHT_EXACT : core::scoring::geometric_solvation
• LK_MATCHING_WEIGHT_OLD_EXACT : core::scoring::geometric_solvation
• lk_nonpolar : core::scoring
• lk_nonpolar_intra_RNA : core::scoring
• lk_polar : core::scoring
• lk_polar_intra_RNA : core::scoring
• lk_sol : core::scoring
• LKB_PoseInfo : core::scoring::methods
• LKB_PoseInfoOP : core::scoring::methods
• LKB_ResidueInfoOP : core::scoring::methods
• LKB_RotamerSetInfo : core::scoring::methods
• LKB_RotamerSetInfoOP : core::scoring::methods
• LnExpressionCOP : protocols::pack_daemon
• LnExpressionOP : protocols::pack_daemon
• load_avge_polynomial_coefficients() : protocols::sasa_scores
• load_build_position_data() : protocols::motifs
• load_checkpoint() : protocols::dna
• load_component_weights() : protocols::optimize_weights
• load_coords_and_torsions() : protocols::loops::loop_closure::ccd
• load_dna_design_defs_from_file() : protocols::dna
• load_dna_design_defs_from_options() : protocols::dna
• load_dna_design_defs_from_strings() : protocols::dna
• load_fastsax_spectrum() : core::scoring::saxs
• load_form_factors() : core::scoring::saxs
• load_loop_definitions() : protocols::loops::loops_definers
• load_s_and_l() : protocols::jobdist , protocols::swa
• load_sasapack_polynomial_coefficients() : protocols::sasa_scores
• load_unboundrot() : core::pack::dunbrack
• LoadPDBMoverCOP : protocols::simple_moves
• LoadPDBMoverOP : protocols::simple_moves
• LoadUnboundRotMoverCOP : protocols::simple_moves
• LoadUnboundRotMoverOP : protocols::simple_moves
• loc_lj : core::scoring
• local_strip_whitespace() : core::io::pdb
• LocalCoordinateConstraintCOP : core::scoring::constraints
• LocalCoordinateConstraintCreator_registrator : core
• LocalCoordinateConstraintOP : core::scoring::constraints
• LocalInserter_SimpleMinCOP : protocols::loophash
• LocalInserter_SimpleMinOP : protocols::loophash
• LocalInserterCOP : protocols::loophash
• LocalInserterOP : protocols::loophash
• locate_rosetta_database() : core
• logdgaussian() : core::scoring::constraints
• logdgaussian_deriv() : core::scoring::constraints
• LongRangeEnergyType : core::scoring::methods
• LongRangeTwoBodyEnergyCOP : core::scoring::methods
• LongRangeTwoBodyEnergyOP : core::scoring::methods
• LOOP_CLOSURE : protocols::abinitio
• loop_local_rmsd() : protocols::loops
• loop_rmsd() : protocols::loops
• loop_rmsd_with_superimpose() : protocols::loops
• loop_rmsd_with_superimpose_core() : protocols::loops
• LoopAnalyzerMoverOP : protocols::analysis
• LoopAnchorFeaturesCOP : protocols::features
• LoopAnchorFeaturesOP : protocols::features
• LoopBuild_main() : protocols::loop_build
• LoopBuildMoverCOP : protocols::loop_build
• LoopBuildMoverOP : protocols::loop_build
• LoopClosureCOP : protocols::loops::loop_closure::ccd
• LoopClosureOP : protocols::loops::loop_closure::ccd
• LoopConfiguration : protocols::loops
• LoopCOP : protocols::fldsgn::topology , protocols::loops
• loopfinder() : protocols::loops
• LoopFragmentClaimerAP : protocols::topology_broker
• LoopFragmentClaimerCAP : protocols::topology_broker
• LoopFragmentClaimerCOP : protocols::topology_broker
• LoopFragmentClaimerOP : protocols::topology_broker
• loophash_main() : protocols::loophash
• LoopHashInserterCOP : protocols::loophash
• LoopHashInserterOP : protocols::loophash
• LoopHashLibraryCOP : protocols::loophash
• LoopHashLibraryOP : protocols::loophash
• LoopHashRelaxProtocolCOP : protocols::loophash
• LoopHashRelaxProtocolOP : protocols::loophash
• LoopHashSamplerCOP : protocols::loophash
• LoopHashSamplerOP : protocols::loophash
• LoopJumpFoldCstCOP : protocols::abinitio
• LoopJumpFoldCstOP : protocols::abinitio
• LoopLengthChangeCOP : protocols::protein_interface_design::movers
• LoopLengthChangeOP : protocols::protein_interface_design::movers
• LoopMover_Perturb_CCDCOP : protocols::loops::loop_mover::perturb
• LoopMover_Perturb_CCDOP : protocols::loops::loop_mover::perturb
• LoopMover_Perturb_KICCOP : protocols::loops::loop_mover::perturb
• LoopMover_Perturb_KICOP : protocols::loops::loop_mover::perturb
• LoopMover_Perturb_QuickCCD_MovesCOP : protocols::loops::loop_mover::perturb
• LoopMover_Perturb_QuickCCD_MovesOP : protocols::loops::loop_mover::perturb
• LoopMover_Perturb_QuickCCDCOP : protocols::loops::loop_mover::perturb
• LoopMover_Perturb_QuickCCDOP : protocols::loops::loop_mover::perturb
• LoopMover_Refine_BackrubCOP : protocols::loops::loop_mover::refine
• LoopMover_Refine_BackrubOP : protocols::loops::loop_mover::refine
• LoopMover_Refine_CCDAP : protocols::loops::loop_mover::refine
• LoopMover_Refine_CCDCAP : protocols::loops::loop_mover::refine
• LoopMover_Refine_CCDCOP : protocols::loops::loop_mover::refine
• LoopMover_Refine_CCDOP : protocols::loops::loop_mover::refine
• LoopMover_Refine_KICCOP : protocols::loops::loop_mover::refine
• LoopMover_Refine_KICOP : protocols::loops::loop_mover::refine
• LoopMoverAP : protocols::loops::loop_mover
• LoopMoverCAP : protocols::loops::loop_mover
• LoopMoverCOP : protocols::loops::loop_mover
• LoopMoverFromCommandLineCOP : protocols::protein_interface_design::movers
• LoopMoverFromCommandLineOP : protocols::protein_interface_design::movers
• LoopMoverOP : protocols::loops::loop_mover
• LoopOP : protocols::fldsgn::topology , protocols::loops
• LoopRefineInnerCycleContainerCOP : protocols::loops::loop_mover::refine
• LoopRefineInnerCycleContainerOP : protocols::loops::loop_mover::refine
• LoopRefineInnerCycleCOP : protocols::loops::loop_mover::refine
• LoopRefineInnerCycleName : protocols::loops::loop_mover::refine
• LoopRefineInnerCycleOP : protocols::loops::loop_mover::refine
• LoopRelaxMoverCOP : protocols::comparative_modeling
• LoopRelaxMoverOP : protocols::comparative_modeling
• LoopRelaxThreadingMoverCOP : protocols::comparative_modeling
• LoopRelaxThreadingMoverOP : protocols::comparative_modeling
• LoopRemodelCOP : protocols::protein_interface_design::movers
• LoopRemodelOP : protocols::protein_interface_design::movers
• LoopResult : protocols::loops::loop_mover
• LoopRlxMoverCOP : protocols::antibody
• LoopRlxMoverOP : protocols::antibody
• Loops : protocols::fldsgn::topology
• loops_are_closed() : protocols::comparative_modeling
• loops_around_residues() : protocols::loops
• loops_from_alignment() : protocols::comparative_modeling
• loops_from_string() : protocols::loops
• loops_from_transitive_alignments() : protocols::comparative_modeling
• loops_set_chainbreak_weight() : protocols::loops::loop_mover
• loops_set_move_map() : protocols::loops
• LoopsCOP : protocols::loops
• LoopsDatabaseDefinerCOP : protocols::loops::loops_definers
• LoopsDatabaseDefinerCreatorCOP : protocols::loops::loops_definers
• LoopsDatabaseDefinerCreatorOP : protocols::loops::loops_definers
• LoopsDatabaseDefinerOP : protocols::loops::loops_definers
• LoopsDefinerCOP : protocols::loops::loops_definers
• LoopsDefinerCreatorCOP : protocols::loops::loops_definers
• LoopsDefinerCreatorOP : protocols::loops::loops_definers
• LoopsDefinerOP : protocols::loops::loops_definers
• LoopsExplicitDefinerCOP : protocols::loops::loops_definers
• LoopsExplicitDefinerCreatorCOP : protocols::loops::loops_definers
• LoopsExplicitDefinerCreatorOP : protocols::loops::loops_definers
• LoopsExplicitDefinerOP : protocols::loops::loops_definers
• LoopsFileDataCOP : protocols::loops
• LoopsFileDataOP : protocols::loops
• LoopsFileDefinerCOP : protocols::loops::loops_definers
• LoopsFileDefinerCreatorCOP : protocols::loops::loops_definers
• LoopsFileDefinerCreatorOP : protocols::loops::loops_definers
• LoopsFileDefinerOP : protocols::loops::loops_definers
• LoopsFileFallbackConfigurationCOP : protocols::loops
• LoopsFileFallbackConfigurationOP : protocols::loops
• LoopsFileIOCOP : protocols::loops
• LoopsFileIOOP : protocols::loops
• LoopsFileLoaderCOP : protocols::loops
• LoopsFileLoaderOP : protocols::loops
• LoopsFileOptionsCOP : protocols::loops
• LoopsFileOptionsOP : protocols::loops
• LoopsOP : protocols::loops
• LOWER_TERMINUS : core::chemical
• LREnergyContainerCOP : core::scoring
• LREnergyContainerOP : core::scoring
• lsf_normal() : core::scoring::dna
• lt_OP_deref() : protocols::genetic_algorithm
• lzs() : protocols::kinmatch