Here is a list of all namespace members with links to the namespace documentation for each member:

- n -

• N : protocols::forge::build::SegmentInsertConnectionScheme
• n2c : protocols::rigid
• N_ACETYLATION() : core::chemical
• n_ci_2b_score_types : core::scoring
• n_correctly_aligned_positions() : core::sequence
• n_daemon_set_messages : protocols::pack_daemon
• n_DOF_Type() : core::id
• n_energy_method_types : core::scoring::methods
• n_energy_methods : core::scoring::methods
• n_external_transforms : protocols::toolbox::match_enzdes_util
• n_fold_types : protocols::fldsgn::topology
• n_inner_iterations() : core::pack
• n_long_range_types : core::scoring::methods
• n_min_pair_data : core::scoring
• n_min_single_data : core::scoring
• n_optE_data_types : protocols::optimize_weights
• N_p_sp2 : core::chemical::orbitals
• N_pi_sp2 : core::chemical::orbitals
• n_probe_radii : protocols::match
• N_PROBES : core::scoring::packstat
• n_score_types : core::scoring
• n_shortranged_2b_score_types : core::scoring
• n_ss_types : protocols::comparative_modeling::features
• n_torsion_bins : protocols::comparative_modeling::features
• na_ade : core::chemical
• NA_ChemicalShiftEnergyCreator_registrator : core
• na_cyt : core::chemical
• na_gua : core::chemical
• na_rad : core::chemical
• na_rcy : core::chemical
• na_rgu : core::chemical
• na_thy : core::chemical
• na_ura : core::chemical
• NAIVE : core::conformation
• name2aa() : core::chemical
• name2type() : protocols::frag_picker
• name3_from_oneletter() : protocols::motifs
• name_from_aa() : core::chemical
• name_from_score_type() : core::scoring
• named_atom_id_to_atom_id() : core::conformation , core::pose
• named_stub_id_to_stub_id() : core::conformation , core::pose
• NamedAtomPairConstraintCOP : core::scoring::constraints
• NamedAtomPairConstraintOP : core::scoring::constraints
• NamedAtoms : core::scoring::constraints
• NAND : protocols::filters
• Naro : core::chemical::sdf
• natbias_hh : core::scoring
• natbias_hs : core::scoring
• natbias_ss : core::scoring
• natbias_stwist : core::scoring
• NatbiasHelicesSheetPotentialOP : protocols::fldsgn::potentials::sspot
• NatbiasHelixPairPotentialOP : protocols::fldsgn::potentials::sspot
• NatbiasSheetPotentialOP : protocols::fldsgn::potentials::sspot
• NatbiasStrandPairPotentialOP : protocols::fldsgn::potentials::sspot
• native_CA_gdtmm() : core::scoring
• native_CA_rmsd() : core::scoring
• native_loop_core_CA_rmsd() : protocols::loops
• natom_aligned() : protocols::hybridization
• NBListCacheOP : core::scoring::symmetry
• NBR : protocols::sic_dock
• nbr_atom_rmsd() : core::scoring
• nbytes : core::scoring::packstat::old
• NCaCaC_Dihedral_FuncAP : core::scoring::disulfides
• NCaCaC_Dihedral_FuncCAP : core::scoring::disulfides
• NCaCaC_Dihedral_FuncCOP : core::scoring::disulfides
• NCaCaC_Dihedral_FuncOP : core::scoring::disulfides
• NcontactsFilterCOP : protocols::fldsgn::filters
• NcontactsFilterOP : protocols::fldsgn::filters
• nCPCrossoverBehaviors : core::scoring::etable::count_pair
• nCPResidueConnectionTypes : core::scoring::etable::count_pair
• Ndouble : core::chemical::sdf
• nearest_atom_for_constraint() : protocols::protein_interface_design::movers
• neigh_count : core::scoring
• neigh_vect : core::scoring
• neigh_vect_raw : core::scoring
• neighbor_count() : protocols::sic_dock
• neighbor_type_filter_tracer() : protocols::simple_filters
• NeighborDependentTabooSamplingKinematicPerturberCOP : protocols::loops::loop_closure::kinematic_closure
• NeighborDependentTabooSamplingKinematicPerturberOP : protocols::loops::loop_closure::kinematic_closure
• NeighborDependentTorsionSamplingKinematicPerturberCOP : protocols::loops::loop_closure::kinematic_closure
• NeighborDependentTorsionSamplingKinematicPerturberOP : protocols::loops::loop_closure::kinematic_closure
• NEIGHBORHOOD_CALC() : protocols::anchored_design
• NeighborhoodByDistanceCalculatorCOP : protocols::toolbox::pose_metric_calculators
• NeighborhoodByDistanceCalculatorOP : protocols::toolbox::pose_metric_calculators
• NeighborListCOP : core::scoring
• NeighborListOP : core::scoring
• NeighborsByDistanceCalculatorCOP : protocols::toolbox::pose_metric_calculators
• NeighborsByDistanceCalculatorOP : protocols::toolbox::pose_metric_calculators
• NestedEnergyTermDDGMutationOptEDataOP : protocols::optimize_weights
• NestedEnergyTermPNatAAOptEPositionDataOP : protocols::optimize_weights
• Neutral : protocols::antibody2
• NEW_JOB_ID : protocols::jd2
• NEW_JOB_ID_TAG : protocols::jd2
• NIT : protocols::match
• nmer_pssm : core::scoring
• nmer_ref : core::scoring
• NMerPSSMEnergyCOP : core::scoring::methods
• NMerPSSMEnergyCreator_registrator : core
• NMerPSSMEnergyOP : core::scoring::methods
• NMerRefEnergyCOP : core::scoring::methods
• NMerRefEnergyCreator_registrator : core
• NMerRefEnergyOP : core::scoring::methods
• NO_ADD_OR_DELETE : protocols::swa::monte_carlo
• NO_CASE : protocols::swa::monte_carlo
• NO_DERIVATIVES_FOR_ATOM : core::scoring::disulfides
• NO_EXTRA_CHI_SAMPLES : core::pack::task
• no_samples : protocols::match::upstream
• no_stats : protocols::moves
• NO_STRANDS : protocols::fldsgn::topology
• NO_SYMMETRIZATION_REQUEST : core::pack::task
• noe_stage() : protocols::abinitio
• NoesyModuleAP : protocols::noesy_assign
• NoesyModuleCAP : protocols::noesy_assign
• NoesyModuleCOP : protocols::noesy_assign
• NoesyModuleOP : protocols::noesy_assign
• nolp : core::scoring::packstat::old
• non_main_chain_sugar_atoms : core::scoring::rna
• non_residue_type_constraint_tracer() : core::scoring::constraints
• noncanonical_atom_count() : core::pose
• noncanonical_chi_count() : core::pose
• noncanonical_residue_count() : core::pose
• nonconst_Membrane_FAEmbed_from_pose() : core::scoring
• nonconst_MembraneEmbed_from_pose() : core::scoring
• nonconst_MembraneTopology_from_pose() : core::scoring
• nonconst_rna_scoring_info_from_pose() : core::scoring::rna
• nonconst_sub_to_full_info_from_pose() : protocols::swa::monte_carlo
• NONE : protocols::jd2::JobInputterInputSource , protocols::swa::rna
• NonlocalFrags_main() : protocols::frag_picker::nonlocal
• NonlocalFragsCOP : protocols::frag_picker::nonlocal
• NonlocalFragsOP : protocols::frag_picker::nonlocal
• NonlocalPairCOP : protocols::frag_picker::nonlocal
• NonlocalPairOP : protocols::frag_picker::nonlocal
• NonPlaidFingerprintCOP : protocols::pockets
• NonPlaidFingerprintOP : protocols::pockets
• NonResidueTypeConstraintCOP : core::scoring::constraints
• NonResidueTypeConstraintOP : core::scoring::constraints
• nonrotameric_chi_sample_wi_nrchi_bin : protocols::match::upstream
• nonrotameric_chi_sample_wi_nrchi_bin_to_lower_boundary : protocols::match::upstream
• nonzero_hbond_weight() : core::scoring::hbonds
• NOPARENT : core::conformation::symmetry
• NOR : protocols::filters
• NoRepackDisulfidesAP : core::pack::task::operation
• NoRepackDisulfidesCAP : core::pack::task::operation
• NoRepackDisulfidesCOP : core::pack::task::operation
• NoRepackDisulfidesCreator_registrator : core
• NoRepackDisulfidesOP : core::pack::task::operation
• NoResFilterCreator_registrator : core
• nori : core::scoring::packstat::old
• Normal : protocols::nonlocal
• NORMALIZED_SUM : protocols::simple_filters
• NORTH : protocols::swa::rna
• NOT : protocols::filters
• not_already_connected() : protocols::dna
• not_universal_main() : protocols::jobdist
• NPDPropCalculatorCOP : protocols::pack_daemon
• NPDPropCalculatorCreatorCOP : protocols::pack_daemon
• NPDPropCalculatorCreatorOP : protocols::pack_daemon
• NPDPropCalculatorOP : protocols::pack_daemon
• nphi : core::scoring::packstat::old
• Nsingle : core::chemical::sdf
• ntheta : core::scoring::packstat::old
• NtoC_RCGOP : protocols::forge::constraints
• Ntriple : core::chemical::sdf
• NU0 : core::scoring::dna
• NU1 : core::scoring::rna , core::scoring::dna
• NU2 : core::scoring::rna , core::scoring::dna
• NU3 : core::scoring::dna
• NU4 : core::scoring::dna
• NullMoverCOP : protocols::moves
• NullMoverOP : protocols::moves
• num_aa_types : core::chemical
• num_atoms() : core::pose
• Num_BBdisplayState : protocols::viewer::graphics_states_param
• num_bytes : core::scoring
• num_cacheable_data_types : core::conformation::RotamerSetCacheableDataType , core::scoring::EnergiesCacheableDataType
• num_canonical_aas : core::chemical
• num_cdr_loops : protocols::antibody2
• num_chi_angles() : core::pose
• Num_ColorModes : protocols::viewer::graphics_states_param
• num_contact_types : protocols::frag_picker
• num_context_graph_types : core::scoring
• num_cstType : protocols::jumping
• num_dofType : protocols::jumping
• NUM_EDGES() : core::scoring::rna
• num_hbond_acceptors() : core::pose
• num_hbond_donors() : core::pose
• num_heavy_atoms() : core::pose
• num_orbital_types : core::chemical::orbitals
• num_orientations : core::scoring
• num_overlaps : core::scoring
• num_phi : core::scoring
• NUM_RNA_CHI_TORSIONS() : core::scoring::rna
• NUM_RNA_MAINCHAIN_TORSIONS() : core::scoring::rna
• NUM_RNA_TORSIONS() : core::scoring::rna
• Num_SCdisplayState : protocols::viewer::graphics_states_param
• Num_ShowHState : protocols::viewer::graphics_states_param
• num_theta : core::scoring
• Num_TrajectoryState : protocols::viewer::graphics_states_param
• number_of_configuration_keywords : protocols::loops
• number_of_loop_refine_inner_cycle_names : protocols::loops::loop_mover::refine
• number_of_ramachandran_hashes : protocols::features
• number_of_residue_identifiers : protocols::loops
• NumDerivCheckDataCOP : core::optimization
• NumDerivCheckDataOP : core::optimization
• numerical_derivative_check() : core::optimization::symmetry , core::optimization
• NumericalDerivCheckResultCOP : core::optimization
• NumericalDerivCheckResultOP : core::optimization
• NVlookupCOP : core::scoring::nv
• NVlookupOP : core::scoring::nv
• NVscoreCOP : core::scoring::nv
• NVscoreCreator_registrator : core
• NVscoreOP : core::scoring::nv
• NWAlignerCOP : core::sequence
• NWAlignerOP : core::sequence