Here is a list of all namespace members with links to the namespace documentation for each member:

- o -

• O : protocols::comparative_modeling::features
• O2H : core::scoring::rna
• O2M_MutateMoverSP : protocols::simple_moves
• O2STAR : core::scoring::rna
• o2star_minimize() : protocols::swa::rna
• O_p_sp2 : core::chemical::orbitals
• O_p_sp2_bb : core::chemical::orbitals
• O_p_sp3 : core::chemical::orbitals
• O_pi_sp2 : core::chemical::orbitals
• O_pi_sp2_bb : core::chemical::orbitals
• Oaro : core::chemical::sdf
• ObserverCacheAP : core::pose::datacache
• ObserverCacheCAP : core::pose::datacache
• ObserverCacheCOP : core::pose::datacache
• ObserverCacheOP : core::pose::datacache
• Obsolet_NamedAtomPairConstraintCOP : core::scoring::constraints
• Obsolet_NamedAtomPairConstraintOP : core::scoring::constraints
• occ_sol_exact : core::scoring
• occ_sol_fitted : core::scoring
• occ_sol_fitted_onebody : core::scoring
• OccFitParam : core::scoring::geometric_solvation
• OccFitParam_amp : core::scoring::geometric_solvation
• OccFitParam_cos_angle_mu : core::scoring::geometric_solvation
• OccFitParam_dist_mu : core::scoring::geometric_solvation
• OccFitParam_max_sq_dist : core::scoring::geometric_solvation
• OccFitParam_min_cos_angle : core::scoring::geometric_solvation
• OccFitParam_num_params : core::scoring::geometric_solvation
• OccFitParam_twice_cos_angle_sigma_sq : core::scoring::geometric_solvation
• OccFitParam_twice_dist_sigma_sq : core::scoring::geometric_solvation
• OccludedHbondSolEnergy_onebodyCreator_registrator : core
• OccludedHbondSolEnergyCreator_registrator : core
• OccupiedSpaceHashCOP : protocols::match
• OccupiedSpaceHashOP : protocols::match
• OCTREE : core::conformation
• Odouble : core::chemical::sdf
• OMEGA : core::scoring
• omega : core::scoring , protocols::swa , protocols::swa::protein
• omega_torsion() : core::id
• OmegaTetherCOP : core::scoring
• OmegaTetherEnergyCOP : core::scoring::methods
• OmegaTetherEnergyCreator_registrator : core
• OmegaTetherEnergyOP : core::scoring::methods
• OmegaTetherOP : core::scoring
• on_pose_accept() : protocols::medal
• ONE : core::pack::dunbrack
• OneBodyEnergyCOP : core::scoring::methods
• OneBodyEnergyOP : core::scoring::methods
• oneletter2aa() : core::chemical
• oneletter_code_from_aa() : core::chemical
• oneletter_code_specifies_aa() : core::chemical
• onError() : core::pack::task
• OneToAllEnergyContainerOP : core::scoring
• OneToAllNeighborIteratorOP : core::scoring
• OnTheFlyInteractionGraphCOP : core::pack::interaction_graph
• OnTheFlyInteractionGraphOP : core::pack::interaction_graph
• OOP_POST : core::chemical
• OOP_PRE : core::chemical
• OopDPuckMinusMoverCOP : protocols::simple_moves::oop
• OopDPuckMinusMoverOP : protocols::simple_moves::oop
• OopDPuckPlusMoverCOP : protocols::simple_moves::oop
• OopDPuckPlusMoverOP : protocols::simple_moves::oop
• OopMoverCOP : protocols::simple_moves::oop
• OopMoverOP : protocols::simple_moves::oop
• OopPatcherCOP : protocols::simple_moves::oop
• OopPatcherOP : protocols::simple_moves::oop
• OopPuckMinusMoverCOP : protocols::simple_moves::oop
• OopPuckMinusMoverOP : protocols::simple_moves::oop
• OopPuckPlusMoverCOP : protocols::simple_moves::oop
• OopPuckPlusMoverOP : protocols::simple_moves::oop
• OopRandomPuckMoverCOP : protocols::simple_moves::oop
• OopRandomPuckMoverOP : protocols::simple_moves::oop
• OopRandomSmallMoverCOP : protocols::simple_moves::oop
• OopRandomSmallMoverOP : protocols::simple_moves::oop
• open_stream() : protocols::noesy_assign
• OperateOnCertainResiduesCOP : core::pack::task::operation
• OperateOnCertainResiduesCreator_registrator : core
• OperateOnCertainResiduesOP : core::pack::task::operation
• Operation : protocols::simple_filters
• operator!=() : core::chemical , core::conformation::symmetry , core::kinematics , core::scoring::hbonds , core::scoring::methods , protocols::jd2
• operator*() : core::kinematics
• operator<() : core::chemical , core::kinematics , core::sequence
• operator<<() : core::kinematics , protocols::loops , core::kinematics , protocols::motifs , core::kinematics , protocols::motifs , protocols::moves , core::kinematics , protocols::moves , core::kinematics , protocols::moves , core::optimization , protocols::noesy_assign , core::pack::interaction_graph , protocols::noesy_assign , core::pack::interaction_graph , protocols::optimize_weights , protocols::pmut_scan , core::pack::task , protocols::pmut_scan , protocols::rigid , core::pose , protocols::rigid , core::pose , protocols::rigid , core::scoring , protocols::scoring::methods::pcs , core::scoring , protocols::scoring::methods::pcs , core::scoring::constraints , protocols::scoring::methods::pcs , core::scoring::constraints , protocols::scoring::methods::pcs2 , core::scoring::constraints , protocols::scoring::methods::pcs2 , core::scoring::constraints , protocols::scoring::methods::pcs2 , core::scoring , protocols::scoring::methods::pcs2 , core::scoring , protocols::scoring::methods::pcs2 , protocols::topology_broker , protocols::toolbox , protocols::scoring::methods::pcs2 , protocols::simple_moves , core::scoring::dssp , protocols::scoring::methods::pcs2 , protocols::simple_moves , protocols::scoring::methods::pcs2 , core::scoring::dssp , protocols::scoring , protocols::sic_dock , core::scoring::dssp , protocols::simple_moves , protocols::simple_moves::carbohydrates , core::scoring::dssp , protocols::simple_moves , core::scoring , protocols::simple_moves , core::scoring::etable::etrie , protocols::toolbox , core::scoring::etable::etrie , protocols::topology_broker , core::scoring::etable::etrie , core::scoring::hackelec , core::scoring::hbonds , core::scoring::hbonds::hbtrie , core::scoring::hbonds , core::scoring::methods , core::scoring::mm , core::scoring::mm::mmtrie , core::scoring::packstat , core::scoring , protocols::loops::loop_mover::refine , core::sequence , protocols::loops::loop_mover::refine , core::sequence , protocols::loops , protocols::ligand_docking::ligand_options , protocols::jumping , core::sequence , protocols::jumping , core::sequence , protocols::jd2::archive , protocols::hotspot_hashing , protocols::abinitio , protocols::frag_picker , protocols::abinitio , protocols::fldsgn::topology , protocols::abinitio , protocols::fldsgn::topology , protocols::abinitio , protocols::antibody2 , protocols::fldsgn::topology , protocols::antibody2 , protocols::fldsgn::topology , protocols::antibody2 , core::chemical , protocols::docking , protocols::antibody2 , protocols::docking , protocols::antibody2 , core::chemical , protocols::dna , protocols::antibody2 , core::chemical , protocols::canonical_sampling , protocols::dna , core::chemical::carbohydrates , protocols::dna , core::chemical , core::conformation , protocols::docking , core::conformation , protocols::docking , core::conformation::symmetry , protocols::docking , protocols::features::helixAssembly , core::fragment , protocols::fldsgn::topology , core::fragment , protocols::fldsgn::topology , core::fragment::picking_old::vall::scores , protocols::fldsgn::topology , core::fragment , protocols::fldsgn::topology , core::fragment , core::id , protocols::fldsgn::topology , core::id , protocols::genetic_algorithm , core::id , protocols::jd2 , core::id , protocols::jumping , core::id , core::io::pdb , protocols::loops::loop_closure::ccd , protocols::loops::loop_mover::perturb , core::io::pdb , protocols::loops::loop_mover::refine , core::kinematics
• operator==() : core::scoring::hbonds , protocols::jd2 , core::scoring::methods , boost::tuples , core::kinematics , core::conformation::symmetry , core::kinematics , core::conformation::symmetry , core::chemical , core::conformation::symmetry , core::scoring::hbonds , boost::tuples , core::scoring , protocols::jd2 , boost::tuples
• operator>>() : protocols::abinitio , core::sequence , protocols::topology_broker , protocols::noesy_assign , protocols::toolbox , protocols::sasa_scores , protocols::abinitio , core::scoring::dssp , core::scoring::packstat , core::kinematics , core::fragment , core::conformation::symmetry , core::chemical , core::scoring::dssp , core::kinematics , protocols::abinitio , core::id , core::kinematics , core::scoring::packstat , core::scoring , core::sequence , protocols::hotspot_hashing , protocols::jd2::archive , protocols::noesy_assign , protocols::toolbox , protocols::sasa_scores , core::kinematics
• OperatorCOP : protocols::simple_filters
• OperatorOP : protocols::simple_filters
• oprod() : protocols::toolbox
• OptCysHGAP : core::pack::task::operation
• OptCysHGCAP : core::pack::task::operation
• OptCysHGCOP : core::pack::task::operation
• OptCysHGCreator_registrator : core
• OptCysHGOP : core::pack::task::operation
• optE_RG() : protocols::optimize_weights
• OptEDataOP : protocols::optimize_weights
• OptEMultifuncCOP : protocols::optimize_weights
• OptEMultifuncMPIMessages : protocols::optimize_weights
• OptEMultifuncOP : protocols::optimize_weights
• OptEPositionDataOP : protocols::optimize_weights
• OptEPositionDataOPs : protocols::optimize_weights
• OptEPositionDataType : protocols::optimize_weights
• OptEVariableExpressionCOP : protocols::optimize_weights
• OptEVariableExpressionOP : protocols::optimize_weights
• OptHAP : core::pack::task::operation
• OptHCAP : core::pack::task::operation
• OptHCOP : core::pack::task::operation
• OptHCreator_registrator : core
• OptHOP : core::pack::task::operation
• optimal_connection_point() : protocols::protein_interface_design
• optimal_water_distance() : core::scoring::methods
• optimize_H_and_notify() : core::pack
• optimizeH() : core::pack
• options_registered_ : protocols::evaluation
• OR : protocols::filters
• orbital_type_enum : core::chemical::orbitals
• OrbitalBond : core::chemical
• OrbitalCOP : core::chemical
• OrbitalCOPs : core::chemical
• OrbitalIndices : core::chemical
• OrbitalOP : core::chemical
• OrbitalOPs : core::chemical
• orbitals_haro : core::scoring
• orbitals_hpol : core::scoring
• orbitals_hpol_bb : core::scoring
• orbitals_orbitals : core::scoring
• OrbitalsFeaturesCOP : protocols::features
• OrbitalsFeaturesOP : protocols::features
• OrbitalsLookupCOP : core::scoring::orbitals
• OrbitalsLookupOP : core::scoring::orbitals
• OrbitalsScoreCreator_registrator : core
• OrbitalTypeSetAP : core::chemical::orbitals
• OrbitalTypeSetCAP : core::chemical::orbitals
• OrbitalTypeSetOP : core::chemical::orbitals
• order() : protocols::forge::methods
• ORDERED_SEQUENTIAL : core::conformation::symmetry
• OrderedFragSetCOP : core::fragment
• OrderedFragSetOP : core::fragment
• OrderedSequentialSymmetrySliderCOP : protocols::simple_moves::symmetry
• OrderedSequentialSymmetrySliderOP : protocols::simple_moves::symmetry
• orient_residue_for_ideal_bond() : core::conformation
• OriginalBackboneBuildPointCOP : protocols::match::upstream
• OriginalBackboneBuildPointOP : protocols::match::upstream
• ORNOT : protocols::filters
• oshi : core::scoring::rna::chemical_shift
• Osingle : core::chemical::sdf
• OTFFlexbbInteractionGraphCOP : protocols::flexpack::interaction_graph
• OTFFlexbbInteractionGraphOP : protocols::flexpack::interaction_graph
• OtherContextScoreFunctionCOP : protocols::flexpack
• OtherContextScoreFunctionOP : protocols::flexpack
• Output_bool_list() : protocols::swa::rna
• Output_boolean() : protocols::swa , protocols::swa::rna , protocols::swa , protocols::swa::rna
• Output_data() : protocols::swa::rna
• output_error_message() : protocols::scoring::methods::pcs2
• Output_fold_tree_info() : protocols::swa::rna
• output_interaction_graph_memory_usage : core::graph
• output_intermediate_pose() : protocols::jd2
• Output_is_prepend_map() : protocols::swa::rna
• Output_movemap() : protocols::swa , protocols::swa::rna
• output_packstat() : protocols::vip
• output_packstat_pdb() : core::scoring::packstat
• output_pair_size() : protocols::swa::rna
• output_pair_size_vector() : protocols::swa::rna
• output_res_map() : protocols::swa::rna
• Output_residue_list() : protocols::swa::rna
• Output_residue_struct() : protocols::swa::rna
• output_rotamer() : protocols::swa::rna
• Output_seq_num_list() : protocols::swa::rna
• output_silent_struct() : protocols::swa::protein
• Output_size_list() : protocols::swa::rna
• OUTPUT_TAG : protocols::canonical_sampling::mc_convergence_checks
• Output_title_text() : protocols::swa::rna
• OutputterSP : protocols::outputter
• OutputWriterCOP : protocols::match::output
• OutputWriterOP : protocols::match::output
• overlap() : core::scoring::packstat
• overlap_chainbreak() : protocols::forge::methods , core::scoring , protocols::forge::methods
• OXY : protocols::match