Here is a list of all namespace members with links to the namespace documentation for each member:

- r -

• R : core::scoring
• R2quat() : protocols::simple_filters
• RadiusOfGyrationFeaturesCOP : protocols::features
• RadiusOfGyrationFeaturesOP : protocols::features
• RAINBOW_COLOR : protocols::viewer::graphics_states_param
• RAINBOW_CPK_COLOR : protocols::viewer::graphics_states_param
• rama : core::scoring
• rama2b : core::scoring
• rama_list_pred() : protocols::relax
• Ramachandran2BCOP : core::scoring
• Ramachandran2BOP : core::scoring
• ramachandran_method : core::scoring::methods
• RamachandranCOP : core::scoring
• RamachandranEnergy2BCOP : core::scoring::methods
• RamachandranEnergy2BCreator_registrator : core
• RamachandranEnergy2BOP : core::scoring::methods
• RamachandranEnergyCOP : core::scoring::methods
• RamachandranEnergyCreator_registrator : core
• RamachandranEnergyOP : core::scoring::methods
• RamachandranHash : protocols::features
• RamachandranOP : core::scoring
• RamaScoreCOP : protocols::frag_picker::scores
• RamaScoreOP : protocols::frag_picker::scores
• RampingFuncCOP : protocols::moves
• RampingFuncOP : protocols::moves
• RampingMoverCOP : protocols::moves
• RampingMoverOP : protocols::moves
• rand_rot() : core::scoring::packstat
• RANDOM : core::conformation::symmetry
• random : protocols::rigid
• random_chunk : protocols::hybridization
• random_conformer_tracer() : protocols::ligand_docking
• random_connection() : protocols::ligand_docking
• random_delay() : core
• random_reorientation_matrix() : protocols::geometry
• RANDOM_SIDE : protocols::forge::build::SegmentInsertConnectionScheme
• RandomConformerMoverCOP : protocols::ligand_docking
• RandomConformerMoverOP : protocols::ligand_docking
• randomize_selected_atoms() : protocols::comparative_modeling
• RandomMoverCOP : protocols::moves
• RandomMoverOP : protocols::moves
• RandomMutationCOP : protocols::protein_interface_design::movers
• RandomMutationOP : protocols::protein_interface_design::movers
• RandomSymmetrySliderCOP : protocols::simple_moves::symmetry
• RandomSymmetrySliderOP : protocols::simple_moves::symmetry
• Range : core::fragment
• range() : protocols::sic_dock
• RangeFilterCOP : protocols::simple_filters
• RangeFilterOP : protocols::simple_filters
• RationalMonteCarloCOP : protocols::simple_moves::rational_mc
• RationalMonteCarloOP : protocols::simple_moves::rational_mc
• RationalMonteCarloTrigger : protocols::simple_moves::rational_mc
• RawStructOP : core::io::raw_data
• RB1 : core::id
• RB2 : core::id
• RB3 : core::id
• RB4 : core::id
• RB5 : core::id
• RB6 : core::id
• RB_DEFAULT : protocols::rbsegment_relax
• rb_grid_rotamer_trials_atr_rep() : protocols::ligand_docking
• rb_grid_score_atr_rep() : protocols::ligand_docking
• RB_HELIX : protocols::rbsegment_relax
• RB_SHEET : protocols::rbsegment_relax
• RBConsIt : protocols::rbsegment_relax
• RBIt : protocols::rbsegment_relax
• rbseg_RG() : protocols::rbsegment_relax
• RBSegmentMoverOP : protocols::rbsegment_relax
• RBSegmentOP : protocols::rbsegment_relax
• RBSegmentRelax_main() : protocols
• RBSegmentRelaxImplOP : protocols
• RBSegmentType : protocols::rbsegment_relax
• rcl1 : core::scoring::rna::chemical_shift
• rcl2 : core::scoring::rna::chemical_shift
• rcl3 : core::scoring::rna::chemical_shift
• rdc : core::scoring
• RDC_lines : protocols::scoring
• RDC_lines_collection : protocols::scoring
• rdc_rohl : core::scoring
• rdc_segments : core::scoring
• RDCScoreCOP : protocols::frag_picker::scores
• RDCScoreOP : protocols::frag_picker::scores
• read1() : protocols::cluster
• read_additional_pdb_data() : core::import_pose
• read_alignment_file() : core::sequence
• read_all_alignments() : core::sequence
• read_all_poses() : core::import_pose
• read_aln() : core::sequence
• read_binary() : core::io::serialization
• read_bytes() : core::io::serialization
• read_ddg_predictions_file() : core::io::PositionDdGInfo
• read_disulf_pairing_list() : protocols::jumping
• read_DNA_rotlib() : core::pack::rotamer_set
• read_dunbrack_library() : core::pack::dunbrack
• read_extra_residues() : protocols::comparative_modeling
• read_fasta_file() : core::sequence
• read_fasta_file_return_str() : core::sequence
• read_fasta_file_str() : core::sequence
• read_fragment_candidates() : protocols::frag_picker
• read_frags() : protocols::topology_broker
• read_general_aln() : core::sequence
• read_general_aln_file() : core::sequence
• read_grishin_aln_file() : core::sequence
• read_H3_cter_fragment() : protocols::antibody
• read_in_mutations() : protocols
• read_loop_fragments() : protocols::loops
• read_pairing_list() : core::scoring::dssp , protocols::jumping
• read_pose_from_pdb() : protocols::enzdes::enzutil
• read_psipred_ss2_file() : core::pose
• read_RBSegment_file() : protocols::rbsegment_relax
• read_std_frags_from_cmd() : core::fragment
• read_stoopid() : core::scoring::packstat
• read_template_scores() : protocols::cluster
• read_topology_file() : core::chemical
• ReadResfileAndObeyLengthEventsCreator_registrator : core
• ReadResfileCreator_registrator : core
• ReadResfileFromDBOP : protocols::toolbox::task_operations
• ReadResfileOP : core::pack::task::operation
• readValueOrDie() : core::scoring::constraints
• READY : protocols::forge::build::BuildInstructionState
• Real : core , protocols::fldsgn::potentials::sspot , protocols::flxbb , protocols::moves , protocols::protein_interface_design::movers , protocols::rosetta_scripts , protocols::sic_dock
• Real3 : core::pack::dunbrack
• Real4 : core::pack::dunbrack
• Real6 : protocols::match
• RealAngleToShort() : protocols::loophash
• RealArrayPoolCOP : core::graph
• RealArrayPoolOP : core::graph
• RealCIter : core::scoring::packstat
• RealIter : core::scoring::packstat
• REALLY_BAD_SCORE() : protocols::loops::loop_closure::ccd
• Reals : core::scoring::packstat , protocols::kinmatch , protocols::sasa_scores , protocols::sic_dock
• rebuild_disulfide() : core::util
• rebuild_loops_until_closed() : protocols::comparative_modeling
• RECEIVE_MESSAGE_TAG : protocols::jd2
• recenter() : core::conformation::symmetry
• Record : core::io::pdb
• RecordRef : core::io::pdb
• RecoverSideChainsMoverCOP : protocols::comparative_modeling
• RecoverSideChainsMoverOP : protocols::comparative_modeling
• recreate_task() : protocols::enzdes::enzutil
• reduced_size() : protocols::scoring::methods::pcs2
• ref : core::scoring
• ref_nc : core::scoring
• ref_spectrum : core::scoring::saxs
• reference_e_method : core::scoring::methods
• ReferenceEnergyCOP : core::scoring::methods
• ReferenceEnergyCreator_registrator : core
• ReferenceEnergyNoncanonicalCOP : core::scoring::methods
• ReferenceEnergyNoncanonicalCreator_registrator : core
• ReferenceEnergyNoncanonicalOP : core::scoring::methods
• ReferenceEnergyOP : core::scoring::methods
• refine_mindis_with_xyzHash() : protocols::sic_dock
• RefineBetaBarrelCOP : protocols::antibody2
• RefineBetaBarrelOP : protocols::antibody2
• RefineOneCDRLoopCentroidCOP : protocols::antibody2
• RefineOneCDRLoopCentroidOP : protocols::antibody2
• RefineOneCDRLoopCOP : protocols::antibody2
• RefineOneCDRLoopOP : protocols::antibody2
• refold_loop_torsion() : protocols::loops::loop_closure::ccd
• RefTag : core::import_pose::atom_tree_diffs
• RefTags : core::import_pose::atom_tree_diffs
• RegionCOP : protocols::nonlocal
• RegionOP : protocols::nonlocal
• register_cutoff() : protocols::abinitio
• register_options() : protocols::evaluation , protocols::jd2
• register_options_broker() : protocols::abinitio
• register_options_universal_main() : protocols::jobdist
• regular_edges_within_interval() : protocols::forge::methods
• regular_facet_containing_position() : protocols::forge::methods
• reinitialize_mingraph_neighborhood_for_residue() : core::pack
• reinstate_side_chain_angles() : protocols::swa::protein
• reject : protocols::hotspot_hashing
• RelativeConnectRightAP : protocols::forge::build
• RelativeConnectRightCAP : protocols::forge::build
• RelativeConnectRightCOP : protocols::forge::build
• RelativeConnectRightOP : protocols::forge::build
• RelativePoseFilterCOP : protocols::simple_filters
• RelativePoseFilterOP : protocols::simple_filters
• RelativeSegmentCOP : protocols::protein_interface_design::filters
• RelativeSegmentOP : protocols::protein_interface_design::filters
• RelativeSequencePositionAP : protocols::forge::build
• RelativeSequencePositionCAP : protocols::forge::build
• RelativeSequencePositionCOP : protocols::forge::build
• RelativeSequencePositionOP : protocols::forge::build
• RELAX : protocols::abinitio
• Relax_main() : protocols::relax
• relax_pose() : protocols::relax
• RelaxProtocolBaseAP : protocols::relax
• RelaxProtocolBaseCAP : protocols::relax
• RelaxProtocolBaseCOP : protocols::relax
• RelaxProtocolBaseOP : protocols::relax
• remap_rb_segments() : protocols::rbsegment_relax
• RemarksOP : core::pose
• remodel_fold_tree_to_account_for_insertion() : core::kinematics
• remodel_generic_taskfactory() : protocols::forge::methods
• RemodelConstraintGeneratorAP : protocols::forge::remodel
• RemodelConstraintGeneratorCAP : protocols::forge::remodel
• RemodelConstraintGeneratorCOP : protocols::forge::remodel
• RemodelConstraintGeneratorOP : protocols::forge::remodel
• RemodelEnzdesCstModuleOP : protocols::forge::remodel
• RemodelLoopMoverAP : protocols::forge::remodel
• RemodelLoopMoverCAP : protocols::forge::remodel
• RemodelLoopMoverCOP : protocols::forge::remodel
• RemodelLoopMoverOP : protocols::forge::remodel
• RemodelMover_AP : protocols::forge::remodel
• RemodelMover_CAP : protocols::forge::remodel
• RemodelMover_COP : protocols::forge::remodel
• RemodelMover_OP : protocols::forge::remodel
• RemodelRotamerLinksOP : protocols::forge::remodel
• REMOVE : protocols::enzdes
• remove_all_enzdes_constraints() : protocols::enzdes::enzutil
• remove_all_variant_types() : protocols::swa::rna
• remove_chain_break_jump_point() : protocols::swa::rna
• remove_chainbreaks_according_to_jumps() : protocols::toolbox::pose_manipulation
• remove_constraint_from_residue_constraints() : core::scoring::constraints
• remove_coordinate_constraints_from_pose() : protocols::protein_interface_design
• remove_cut() : protocols::jumping
• remove_cutpoint() : protocols::forge::methods
• remove_cutpoint_closed() : protocols::rna
• remove_cutpoint_variants() : core::util , protocols::forge::methods , protocols::loops
• remove_cutpoints() : protocols::forge::methods
• remove_cutpoints_closed() : protocols::rna
• remove_end_variants() : protocols::swa::protein
• remove_file() : protocols::swa::rna
• remove_hotspot_constraints_from_pose() : protocols::hotspot_hashing
• remove_ligand_canonical_residues() : core::pose
• remove_lower_terminus_type_from_conformation_residue() : core::conformation
• remove_lower_terminus_type_from_pose_residue() : core::pose
• remove_missing_density() : protocols::loops
• remove_non_protein_residues() : protocols::toolbox::pose_manipulation
• remove_nonprotein_residues() : core::pose
• remove_remark_header_for_geomcst() : protocols::enzdes::enzutil
• remove_residues() : protocols::hybridization
• remove_short_chunks() : protocols::loops
• remove_small_gaps() : protocols::loops
• remove_upper_terminus_type_from_conformation_residue() : core::conformation
• remove_upper_terminus_type_from_pose_residue() : core::pose
• remove_variant_type_from_conformation_residue() : core::conformation
• remove_variant_type_from_pose_residue() : core::pose
• remove_variant_type_from_residue() : core::pose
• Remove_virtual_O2Star_hydrogen() : protocols::swa::rna
• remove_virtual_residues() : core::pose
• remove_virtual_rna_residue_variant_type() : protocols::swa::rna
• remove_whitespaces() : core::scoring::rna::chemical_shift
• renumber_pdbinfo_based_on_conf_chains() : core::pose
• renumber_with_pdb_info() : protocols::hybridization
• reorder_after_append() : protocols::swa::monte_carlo
• reorder_after_delete() : protocols::swa::monte_carlo
• reorder_after_insert() : protocols::swa::monte_carlo
• reorder_after_prepend() : protocols::swa::monte_carlo
• reorder_sub_to_full_info_after_append() : protocols::swa::monte_carlo
• reorder_sub_to_full_info_after_delete() : protocols::swa::monte_carlo
• reorder_sub_to_full_info_after_prepend() : protocols::swa::monte_carlo
• reorder_with_first_non_mobile_as_root() : protocols::ligand_docking
• reorient_extended_fibril() : protocols::fibril
• repackable_residues() : core::pack
• repackable_residues_dup() : core::pack
• RepackSidechainsMoverCOP : protocols::simple_moves
• RepackSidechainsMoverOP : protocols::simple_moves
• RepackTrialCOP : protocols::loops::loop_mover::refine
• RepackTrialOP : protocols::loops::loop_mover::refine
• RepeatMoverCOP : protocols::moves
• RepeatMoverOP : protocols::moves
• RepGridTracer() : protocols::qsar::scoring_grid
• replace() : protocols::forge::methods
• replace_conformation_residue_copying_existing_coordinates() : core::conformation
• replace_pose_residue_copying_existing_coordinates() : core::pose
• replace_region() : protocols::grafting
• replace_residue_in_atom_tree() : core::conformation
• replace_residue_keeping_all_atom_positions() : protocols::toolbox::match_enzdes_util
• replace_substr() : core::kinematics
• replaced_symmetric_foldtree_with_new_monomer() : core::conformation::symmetry
• ReplicaExchangeMC_COP : protocols::moves
• ReplicaExchangeMC_OP : protocols::moves
• ReplicateFilterCOP : protocols::filters
• ReplicateFilterOP : protocols::filters
• ReplicateTaskAP : core::pack::task::operation
• ReplicateTaskCAP : core::pack::task::operation
• ReplicateTaskCOP : core::pack::task::operation
• ReplicateTaskCreator_registrator : core
• ReplicateTaskOP : core::pack::task::operation
• REPLONLY : core::chemical
• report_application_command() : core
• report_batch_inconsistency() : protocols::jd2::archive
• report_tag_error() : protocols::jd2::archive
• report_value_error() : protocols::jd2::archive
• ReportCOP : protocols::features
• ReportOP : protocols::features
• ReportToDBCOP : protocols::features
• ReportToDBOP : protocols::features
• RepulsiveOnlyMoverCOP : protocols::simple_moves
• RepulsiveOnlyMoverOP : protocols::simple_moves
• REQUEST_MESSAGE_TAG : protocols::jd2
• REQUEST_SYMMETRIZE_BY_INTERSECTION : core::pack::task
• REQUEST_SYMMETRIZE_BY_UNION : core::pack::task
• requires_CB_mapping() : core::scoring::constraints
• res1_pointed_at_res2() : core::pack::task::operation::util
• res_type_constraint : core::scoring
• res_type_linking_constraint : core::scoring
• resample() : core::scoring::electron_density
• rescale_scorefxn() : protocols::swa::rna
• reset_x() : protocols::toolbox
• ResfileCommandCOP : core::pack::task
• ResfileCommandOP : core::pack::task
• ResfileContentsCOP : core::pack::task
• ResfileContentsOP : core::pack::task
• ResFileOutputterSP : protocols::outputter
• ResFilterCOP : core::pack::task::operation
• ResFilterCreatorCOP : core::pack::task::operation
• ResFilterCreatorOP : core::pack::task::operation
• ResFilterFactoryCOP : core::pack::task::operation
• ResFilterFactoryOP : core::pack::task::operation
• ResFilterOP : core::pack::task::operation
• ResIdCOP : protocols::moves
• ResIdOP : protocols::moves
• ResidualDipolarCoupling_RohlCOP : core::scoring
• ResidualDipolarCoupling_RohlOP : core::scoring
• ResidualDipolarCouplingCOP : core::scoring
• ResidualDipolarCouplingEnergy_RohlCreator_registrator : core
• ResidualDipolarCouplingEnergyCreator_registrator : core
• ResidualDipolarCouplingEnergyOP : core::scoring::methods
• ResidualDipolarCouplingEnergyRigidSegmentsOP : core::scoring::methods , protocols::scoring::methods
• ResidualDipolarCouplingOP : core::scoring
• ResidualDipolarCouplingRigidSegmentsCOP : protocols::scoring
• ResidualDipolarCouplingRigidSegmentsOP : protocols::scoring
• residue_addition_type : protocols::simple_moves
• residue_burial_filter_tracer() : protocols::simple_filters
• residue_center_of_mass() : core::conformation::symmetry , protocols::geometry
• RESIDUE_COLOR : protocols::viewer::graphics_states_param
• RESIDUE_CPK_COLOR : protocols::viewer::graphics_states_param
• residue_cutoff() : protocols::abinitio
• residue_distance_filter_tracer() : protocols::simple_filters
• residue_fast_pair_energy_attached_H() : core::scoring
• residue_is_bulge() : protocols::rna
• residue_list_sort_citeria() : protocols::swa::rna
• residue_packer_states() : protocols::rosetta_scripts
• residue_point_graph_from_conformation() : core::conformation
• residue_sc_rmsd_no_super() : core::scoring , protocols::hotspot_hashing
• residue_selector_single_from_line() : core::chemical
• residue_type_all_patches_name() : core::chemical
• residue_type_base_name() : core::chemical
• residue_type_has_waters() : core::scoring::methods
• residue_types_from_saccharide_sequence() : core::pose
• residue_types_from_sequence() : core::pose
• ResidueAP : core::conformation
• ResidueAtomTreeCollectionCOP : core::pack::scmin
• ResidueAtomTreeCollectionMomentoCOP : core::pack::scmin
• ResidueAtomTreeCollectionMomentoOP : core::pack::scmin
• ResidueAtomTreeCollectionOP : core::pack::scmin
• ResidueBurialFeaturesCOP : protocols::features
• ResidueBurialFeaturesOP : protocols::features
• ResidueCAP : core::conformation
• ResidueCAPs : core::conformation
• ResidueCartBondedParametersAP : core::scoring::methods
• ResidueCartBondedParametersCAP : core::scoring::methods
• ResidueCartBondedParametersCOP : core::scoring::methods
• ResidueCartBondedParametersOP : core::scoring::methods
• ResidueConformationFeaturesCOP : protocols::features
• ResidueConformationFeaturesOP : protocols::features
• ResidueConstraintsCOP : core::scoring::constraints
• ResidueConstraintsOP : core::scoring::constraints
• ResidueCoordinateChangeListOP : core::kinematics
• ResidueCOP : core::conformation
• ResidueCOPs : core::conformation
• ResidueDecompositionByChainCalculatorCOP : protocols::toolbox::pose_metric_calculators
• ResidueDecompositionByChainCalculatorOP : protocols::toolbox::pose_metric_calculators
• ResidueFeatureCOP : protocols::comparative_modeling::features
• ResidueFeatureOP : protocols::comparative_modeling::features
• ResidueFeaturesCOP : protocols::features
• ResidueFeaturesOP : protocols::features
• ResidueGridScoresFeaturesCOP : protocols::features
• ResidueGridScoresFeaturesOP : protocols::features
• ResidueHasPropertyCreator_registrator : core
• ResidueHasPropertyOP : core::pack::task::operation
• ResidueIdentifier : protocols::loops
• ResidueIEFilterCOP : protocols::simple_filters
• ResidueIEFilterOP : protocols::simple_filters
• ResidueIndexIsCreator_registrator : core
• ResidueIndexIsntCreator_registrator : core
• ResidueIndexIsntOP : core::pack::task::operation
• ResidueIndexIsOP : core::pack::task::operation
• ResidueIndexList : core::kinematics
• ResidueKinWriterCOP : core::conformation
• ResidueKinWriterOP : core::conformation
• ResidueLacksPropertyCreator_registrator : core
• ResidueLacksPropertyOP : core::pack::task::operation
• ResidueListIterator : core::kinematics
• ResidueLoaderCreator_registrator : core
• ResidueMatcherCOP : core::conformation
• ResidueMatcherOP : core::conformation
• ResidueName3IsCreator_registrator : core
• ResidueName3IsntCreator_registrator : core
• ResidueName3IsntOP : core::pack::task::operation
• ResidueName3IsOP : core::pack::task::operation
• ResidueNblistDataCOP : core::scoring
• ResidueNblistDataOP : core::scoring
• ResidueNeighborConstIteratorCOP : core::scoring
• ResidueNeighborConstIteratorOP : core::scoring
• ResidueNeighborIteratorCOP : core::scoring
• ResidueNeighborIteratorOP : core::scoring
• ResidueOP : core::conformation
• ResidueOPs : core::conformation
• ResiduePairEvalType : core::pack::interaction_graph
• ResiduePairJumpCOP : protocols::jumping
• ResiduePairJumpOP : protocols::jumping
• ResiduePairJumpSetupCOP : protocols::jumping
• ResiduePairJumpSetupOP : protocols::jumping
• ResiduePairJumpSetupSingleCOP : protocols::jumping
• ResiduePairJumpSetupSingleOP : protocols::jumping
• ResiduePairJumpSingleCOP : protocols::jumping
• ResiduePairJumpSingleOP : protocols::jumping
• ResiduePairNeighborListCOP : core::scoring
• ResiduePairNeighborListOP : core::scoring
• ResiduePDBIndexIsCreator_registrator : core
• ResiduePDBIndexIsntCreator_registrator : core
• ResiduePDBIndexIsntOP : core::pack::task::operation
• ResiduePDBIndexIsOP : core::pack::task::operation
• residues_in_interface_tracer() : protocols::simple_filters
• residues_interact() : core::scoring::methods
• ResidueScoresFeaturesCOP : protocols::features
• ResidueScoresFeaturesOP : protocols::features
• ResidueSecondaryStructureFeaturesCOP : protocols::features
• ResidueSecondaryStructureFeaturesOP : protocols::features
• ResidueSelection : core::scoring
• ResidueSelectionVector : core::scoring
• ResidueSelectorOP : core::chemical
• ResidueSelectorSingleOP : core::chemical
• ResidueTorsionRestraintsCOP : protocols::ligand_docking
• ResidueTorsionRestraintsOP : protocols::ligand_docking
• ResidueTotalScoresFeaturesCOP : protocols::features
• ResidueTotalScoresFeaturesOP : protocols::features
• ResidueTypeAP : core::chemical
• ResidueTypeCAP : core::chemical
• ResidueTypeCAPs : core::chemical
• ResidueTypeConstraintCOP : core::scoring::constraints
• ResidueTypeConstraintOP : core::scoring::constraints
• ResidueTypeCOP : core::chemical
• ResidueTypeCOPs : core::chemical
• ResidueTypeLinkingConstraintCOP : core::scoring::constraints
• ResidueTypeLinkingConstraintOP : core::scoring::constraints
• ResidueTypeOP : core::chemical
• ResidueTypeOPs : core::chemical
• ResidueTypeResFilterCreator_registrator : core
• ResidueTypeSetCAP : core::chemical
• ResidueTypeSetOP : core::chemical
• ResidueTypesFeaturesCOP : protocols::features
• ResidueTypesFeaturesOP : protocols::features
• ResidueVicinityInfoCOP : protocols::forge::remodel
• ResidueVicinityInfoOP : protocols::forge::remodel
• ResidueVicinityRCGCAP : protocols::forge::remodel
• ResidueVicinityRCGOP : protocols::forge::remodel
• ResiudeLoaderOptionsCreator_registrator : core
• ResLvlTaskOperationCOP : core::pack::task::operation
• ResLvlTaskOperationCreatorCOP : core::pack::task::operation
• ResLvlTaskOperationCreatorOP : core::pack::task::operation
• ResLvlTaskOperationFactoryCOP : core::pack::task::operation
• ResLvlTaskOperationFactoryOP : core::pack::task::operation
• ResLvlTaskOperationOP : core::pack::task::operation
• ResMap : core::pose , protocols::swa::protein , protocols::swa
• ResolutionSwitcherCOP : protocols::abinitio
• ResolutionSwitcherOP : protocols::abinitio
• ResonanceAP : protocols::noesy_assign
• ResonanceCAP : protocols::noesy_assign
• ResonanceCOP : protocols::noesy_assign
• ResonanceListAP : protocols::noesy_assign
• ResonanceListCAP : protocols::noesy_assign
• ResonanceListCOP : protocols::noesy_assign
• ResonanceListOP : protocols::noesy_assign
• ResonanceOP : protocols::noesy_assign
• RESOURCE_MANAGED_JOB : protocols::jd2::JobInputterInputSource
• RespairInteractionsCOP : core::scoring::custom_pair_distance
• RespairInteractionsOP : core::scoring::custom_pair_distance
• ResPairMinimizationDataCOP : core::scoring
• ResPairMinimizationDataOP : core::scoring
• resSeq : protocols::loops
• ResSingleMinimizationDataCOP : core::scoring
• ResSingleMinimizationDataOP : core::scoring
• restore_pose_from_rbsegs() : protocols::rbsegment_relax
• restore_residues() : protocols::forge::methods
• restrain_ligand_nbr_atom() : protocols::ligand_docking
• restrict_dna_rotamers() : protocols::dna
• restrict_prec() : core::io::pdb
• restrict_to_canonical_aas() : protocols::multistate_design
• restrict_to_protein_residues() : protocols::ligand_docking
• restrict_to_single_sequence() : protocols::dna
• RestrictAbsentCanonicalAASCreator_registrator : core
• RestrictAbsentCanonicalAASOP : core::pack::task::operation
• RestrictAbsentCanonicalAASRLTCreator_registrator : core
• RestrictAbsentCanonicalAASRLTOP : core::pack::task::operation
• RestrictByCalculatorsOperationCOP : protocols::toolbox::task_operations
• RestrictByCalculatorsOperationOP : protocols::toolbox::task_operations
• RestrictChainToRepackingOperationCOP : protocols::toolbox::task_operations
• RestrictChainToRepackingOperationOP : protocols::toolbox::task_operations
• RestrictConservedLowDdgOperationOP : protocols::toolbox::task_operations
• RestrictDesignToProteinDNAInterfaceOP : protocols::dna
• RestrictIdentitiesAtAlignedPositionsOperationCOP : protocols::toolbox::task_operations
• RestrictIdentitiesAtAlignedPositionsOperationOP : protocols::toolbox::task_operations
• RestrictInterGroupVectorOperationCOP : protocols::toolbox::task_operations
• RestrictInterGroupVectorOperationOP : protocols::toolbox::task_operations
• RestrictNativeResiduesOperationOP : protocols::toolbox::task_operations
• RestrictNonSurfaceToRepackingOperationOP : protocols::toolbox::task_operations
• RestrictOperationsBaseCOP : protocols::toolbox::task_operations
• RestrictOperationsBaseOP : protocols::toolbox::task_operations
• RestrictResiduesToRepackingOperationCOP : protocols::toolbox::task_operations
• RestrictResiduesToRepackingOperationOP : protocols::toolbox::task_operations
• RestrictResidueToRepackingCreator_registrator : core
• RestrictResidueToRepackingOP : core::pack::task::operation
• RestrictToAlignedSegmentsOperationCOP : protocols::toolbox::task_operations
• RestrictToAlignedSegmentsOperationOP : protocols::toolbox::task_operations
• RestrictToCDRH3LoopOP : protocols::toolbox::task_operations
• RestrictToInterfaceCOP : protocols::toolbox::task_operations
• RestrictToInterfaceOP : protocols::toolbox::task_operations
• RestrictToInterfaceOperationCOP : protocols::toolbox::task_operations
• RestrictToInterfaceOperationOP : protocols::toolbox::task_operations
• RestrictToInterfaceVectorOperationCOP : protocols::toolbox::task_operations
• RestrictToInterfaceVectorOperationOP : protocols::toolbox::task_operations
• RestrictToLoopsAndNeighborsOP : protocols::toolbox::task_operations
• RestrictToNeighborhoodOperationCOP : protocols::toolbox::task_operations
• RestrictToNeighborhoodOperationOP : protocols::toolbox::task_operations
• RestrictToRepackingCreator_registrator : core
• RestrictToRepackingOP : core::pack::task::operation
• RestrictToRepackingRLTCreator_registrator : core
• RestrictToRepackingRLTOP : core::pack::task::operation
• RestrictToTerminiOperationCOP : protocols::toolbox::task_operations
• RestrictToTerminiOperationOP : protocols::toolbox::task_operations
• RestrictYSDesignCreator_registrator : core
• ResTypeSequence : protocols::dna
• ResTypeSequences : protocols::dna
• RESULTS : core::scoring::sc
• retain_top() : core::fragment
• retrieve_assignment() : protocols::noesy_assign
• retrieve_base_partner_from_pose() : core::scoring::dna
• retrieve_base_partner_from_pose_inline() : core::scoring::methods
• retrieve_const_ss_info_from_pose() : core::scoring
• retrieve_coordinates() : core::scoring
• retrieve_CSA_from_pose() : core::scoring
• retrieve_DC_from_pose() : core::scoring
• retrieve_nonconst_residue_info() : core::scoring::methods
• retrieve_nonconst_ss_info_from_pose() : core::scoring
• retrieve_RDC_from_pose() : core::scoring
• retrieve_RDC_ROHL_from_pose() : core::scoring
• retrieve_RDC_segments_from_pose() : protocols::scoring
• retrieve_residue_info() : core::scoring::methods
• retrieve_rotamer_set_info() : core::scoring::methods
• return_nearest_residue() : core::conformation::symmetry , protocols::geometry
• return_region() : protocols::grafting
• ReturnSidechainMoverCOP : protocols::simple_moves
• ReturnSidechainMoverOP : protocols::simple_moves
• Reversions : protocols::dna
• RFd_like : protocols::fldsgn::topology
• rg : core::scoring
• RG() : core::conformation::symmetry , core::fragment::picking_old::vall::eval , core::fragment , core::io::pdb , core::io::silent , core::kinematics , core::optimization , core::pack::annealer , core::pack::interaction_graph , core::pack::rotamer_set , core::pose::symmetry , core::scoring::constraints , protocols::abinitio , protocols::ub_e2c , protocols::cluster , protocols::coarse_rna , protocols::comparative_modeling , protocols::ddg , protocols::design_opt , protocols::flexpack::annealer , protocols::forge::build , protocols::forge::methods , protocols::forge::remodel , protocols::wum , protocols::hybridization , protocols::idealize , protocols::jobdist , protocols::jumping , protocols::loop_build , protocols::loophash , protocols::loops , protocols::loops::loop_closure::ccd , protocols::loops::loop_mover , protocols::loops::loop_mover::perturb , protocols::loops::loop_mover::refine , protocols , protocols::loops , protocols::match , protocols::moves , protocols::nonlocal , protocols::toolbox::pose_metric_calculators , protocols::protein_interface_design::movers , protocols::rbsegment_relax , protocols::rigid , protocols::rna , protocols::simple_moves , protocols::rna , protocols::rosetta_scripts , protocols::simple_moves::asym_fold_and_dock , protocols::simple_moves , protocols::seeded_abinitio , protocols::simple_moves , protocols::simple_moves::symmetry , protocols::simple_moves , protocols::wum , protocols::rna , protocols::protein_interface_design::movers , protocols::loops , protocols::loops::loop_mover::refine , protocols::loops::loop_closure::kinematic_closure , protocols::loophash , protocols::ligand_docking , protocols::frag_picker::scores , protocols::forge::methods , protocols::enzdes , protocols::abinitio , core::scoring , core::pack , core::fragment::picking_old::vall::eval
• rg() : protocols::simple_moves
• RG_Energy_FastCreator_registrator : core
• RG_Energy_RNACreator_registrator : core
• RG_MinDataOP : core::scoring::methods
• RHIJU_COLOR : protocols::viewer::graphics_states_param
• RigidBodyDofPerturbMoverCOP : protocols::rigid
• RigidBodyDofPerturbMoverOP : protocols::rigid
• RigidBodyDofRandomizeMoverCOP : protocols::rigid
• RigidBodyDofRandomizeMoverOP : protocols::rigid
• RigidBodyDofRandomTransMoverCOP : protocols::rigid
• RigidBodyDofRandomTransMoverOP : protocols::rigid
• RigidBodyDofSeqPerturbMoverCOP : protocols::rigid
• RigidBodyDofSeqPerturbMoverOP : protocols::rigid
• RigidBodyDofSeqRandomizeMoverCOP : protocols::rigid
• RigidBodyDofSeqRandomizeMoverOP : protocols::rigid
• RigidBodyDofSeqTransMoverCOP : protocols::rigid
• RigidBodyDofSeqTransMoverOP : protocols::rigid
• RigidBodyDofTransMoverCOP : protocols::rigid
• RigidBodyDofTransMoverOP : protocols::rigid
• RigidBodyInfoOP : protocols::docking
• RigidBodyMotionMoverCOP : protocols::rigid
• RigidBodyMotionMoverOP : protocols::rigid
• RigidBodyMoverCOP : protocols::rigid
• RigidBodyMoverOP : protocols::rigid
• RigidBodyMoveRSOCOP : protocols::toolbox::rotamer_set_operations
• RigidBodyMoveRSOOP : protocols::toolbox::rotamer_set_operations
• RigidBodyPerturbMoverCOP : protocols::rigid
• RigidBodyPerturbMoverOP : protocols::rigid
• RigidBodyPerturbNoCenterMoverCOP : protocols::rigid
• RigidBodyPerturbNoCenterMoverOP : protocols::rigid
• RigidBodyRandomizeMoverCOP : protocols::rigid
• RigidBodyRandomizeMoverOP : protocols::rigid
• RigidBodySamplerCOP : protocols::swa
• RigidBodySamplerOP : protocols::swa
• RigidBodySpinMoverCOP : protocols::rigid
• RigidBodySpinMoverOP : protocols::rigid
• RigidBodyTransMoverCOP : protocols::rigid
• RigidBodyTransMoverOP : protocols::rigid
• RigidChunkClaimerAP : protocols::topology_broker
• RigidChunkClaimerCAP : protocols::topology_broker
• RigidChunkClaimerCOP : protocols::topology_broker
• RigidChunkClaimerOP : protocols::topology_broker
• RigidLigandBuilderCOP : protocols::match::downstream
• RigidLigandBuilderOP : protocols::match::downstream
• RigidScoreCOP : protocols::sic_dock
• RigidScoreOP : protocols::sic_dock
• RigidSearchMoverCOP : protocols::ligand_docking
• RigidSearchMoverOP : protocols::ligand_docking
• ring_current_effect() : core::scoring::rna::chemical_shift
• ring_current_effect_individual_ring() : core::scoring::rna::chemical_shift
• RING_HYBRID : core::chemical
• ring_pos() : core::scoring::rna::chemical_shift
• RingConformationMoverCOP : protocols::simple_moves::carbohydrates
• RingConformationMoverOP : protocols::simple_moves::carbohydrates
• rms : core::scoring
• rms_at_all_corresponding_atoms() : core::scoring
• rms_at_corresponding_atoms() : core::scoring
• rms_at_corresponding_atoms_no_super() : core::scoring
• rms_at_corresponding_heavy_atoms() : core::scoring
• RMS_EnergyCreator_registrator : core
• rms_error_with_noise() : core::import_pose::atom_tree_diffs
• RMSD_FRAG_STORE() : protocols::loops::loop_closure::ccd
• rmsd_no_super() : core::scoring
• rmsd_no_super_subset() : core::scoring
• rmsd_over_residue_list() : protocols::swa::rna
• rmsd_with_super() : core::scoring
• rmsd_with_super_subset() : core::scoring
• RMSwrapper() : protocols::simple_filters
• RNA : core::chemical
• RNA_AddMoverOP : protocols::swa::monte_carlo
• RNA_AddOrDeleteMoverOP : protocols::swa::monte_carlo
• RNA_AnalyticLoopCloserOP : protocols::coarse_rna
• RNA_AtomVDWCOP : core::scoring::rna
• RNA_AtomVDWOP : core::scoring::rna
• rna_backbone_backbone : core::scoring
• rna_base_axis : core::scoring
• rna_base_axis_pairwise : core::scoring
• rna_base_backbone : core::scoring
• rna_base_pair : core::scoring
• rna_base_pair_pairwise : core::scoring
• rna_base_stack : core::scoring
• rna_base_stack_axis : core::scoring
• rna_base_stack_axis_pairwise : core::scoring
• rna_base_stack_pairwise : core::scoring
• rna_base_stagger : core::scoring
• rna_base_stagger_pairwise : core::scoring
• rna_bond_geometry : core::scoring
• rna_bulge : core::scoring
• RNA_BulgeEnergyCreator_registrator : core
• RNA_CentroidInfoOP : core::scoring::rna
• rna_chem_shift : core::scoring
• RNA_ChunkLibraryOP : protocols::rna
• RNA_Data : core::scoring::rna
• rna_data_backbone : core::scoring
• rna_data_base : core::scoring
• RNA_DataBackboneEnergyCreator_registrator : core
• RNA_DataInfoAP : core::scoring::rna
• RNA_DataInfoOP : core::scoring::rna
• RNA_DataReaderOP : protocols::rna
• RNA_DeleteMoverOP : protocols::swa::monte_carlo
• rna_fa_atr_base : core::scoring
• rna_fa_rep_base : core::scoring
• RNA_FilteredBaseBaseInfoOP : core::scoring::rna
• RNA_FragmentMoverOP : protocols::rna
• RNA_FragmentsOP : protocols::rna
• RNA_FullAtomStackingEnergyCreator_registrator : core
• RNA_FullAtomVDW_BasePhosphateCOP : core::scoring::rna
• RNA_FullAtomVDW_BasePhosphateCreator_registrator : core
• RNA_FullAtomVDW_BasePhosphateOP : core::scoring::rna
• RNA_HelixAssemblerOP : protocols::rna
• RNA_HIRES_WTS() : core::scoring
• RNA_IdealCoordAP : protocols::rna
• RNA_IdealCoordOP : protocols::rna
• RNA_JumpLibraryOP : protocols::rna
• RNA_LJ_BaseEnergyCreator_registrator : core
• RNA_LoopCloserOP : protocols::rna
• RNA_LORES_PLUS_HIRES_WTS : core::scoring
• RNA_LORES_WTS : core::scoring
• RNA_LowResolutionPotentialOP : core::scoring::rna
• rna_mg : core::scoring
• RNA_Mg_EnergyCreator_registrator : core
• rna_mg_indirect : core::scoring
• RNA_Mg_KnowledgeBasedPotentialCOP : core::scoring::rna
• RNA_Mg_KnowledgeBasedPotentialOP : core::scoring::rna
• rna_mg_rep : core::scoring
• RNA_MinimizerOP : protocols::rna
• RNA_O2StarMoverOP : protocols::swa::monte_carlo
• RNA_PairingList : protocols::rna
• RNA_PairingTemplateList : protocols::rna
• RNA_PairingTemplateMap : protocols::rna
• RNA_PairingTemplateOP : protocols::rna
• RNA_PairwiseLowResolutionEnergyCreator_registrator : core
• RNA_RawBaseBaseInfoAP : core::scoring::rna
• RNA_RawBaseBaseInfoOP : core::scoring::rna
• RNA_RelaxerOP : protocols::rna
• rna_repulsive : core::scoring
• rna_residue_name_to_num() : core::scoring::rna
• RNA_ResidueTypeAP : core::chemical::rna
• RNA_ResidueTypeCAP : core::chemical::rna
• RNA_ResidueTypeCOP : core::chemical::rna
• RNA_ResidueTypeOP : core::chemical::rna
• rna_rg : core::scoring
• rna_scoring_info_from_pose() : core::scoring::rna
• RNA_ScoringInfoOP : core::scoring::rna
• RNA_SecStructInfoOP : protocols::rna
• RNA_SilentStructCreator_registrator : core
• RNA_SilentStructOP : core::io::silent
• RNA_StructureParametersOP : protocols::rna
• rna_sugar_close : core::scoring
• RNA_SugarCloseEnergyCOP : core::scoring::rna
• RNA_SugarCloseEnergyCreator_registrator : core
• RNA_SugarCloseEnergyOP : core::scoring::rna
• RNA_SWA_MonteCarloMoverOP : protocols::swa::monte_carlo
• rna_torsion : core::scoring
• RNA_TorsionEnergyCOP : core::scoring::rna
• RNA_TorsionEnergyCreator_registrator : core
• RNA_TorsionEnergyOP : core::scoring::rna
• RNA_TorsionMoverOP : protocols::swa::monte_carlo
• RNA_TorsionPotentialCOP : core::scoring::rna
• RNA_TorsionPotentialOP : core::scoring::rna
• rna_vdw : core::scoring
• RNA_VDW_EnergyCreator_registrator : core
• RNAHackElecEnergyCreator_registrator : core
• RNAseH : protocols::fldsgn::topology
• rolling_score() : protocols::frag_picker::scores
• RollMoverCOP : protocols::rigid
• RollMoverOP : protocols::rigid
• RosI : protocols::fldsgn::topology
• RosO : protocols::fldsgn::topology
• Rot : core::scoring::packstat
• rot1 : protocols::jumping
• rot2 : protocols::jumping
• rot_sample_from_name() : core::pack::task
• rotamer_from_chi() : core::pack::dunbrack
• rotamer_from_chi_02() : core::pack::dunbrack
• rotamer_trials() : core::pack
• RotamerAssigningAnnealerOP : core::pack::annealer
• RotamerBoltzCalculatorCOP : protocols::toolbox::pose_metric_calculators
• RotamerBoltzCalculatorOP : protocols::toolbox::pose_metric_calculators
• RotamerBoltzmannWeightFeaturesCOP : protocols::features
• RotamerBoltzmannWeightFeaturesOP : protocols::features
• RotamerBoltzmannWeightFilterCOP : protocols::simple_filters
• RotamerBoltzmannWeightFilterOP : protocols::simple_filters
• RotamerConstraintCOP : core::pack::dunbrack
• RotamerConstraintOP : core::pack::dunbrack
• RotamerCouplingsCOP : core::pack::rotamer_set
• RotamerCouplingsOP : core::pack::rotamer_set
• RotamerDNAHBondFilterOP : protocols::dna
• RotamerDotsCOP : core::pack::interaction_graph
• RotamerDotsOP : core::pack::interaction_graph
• RotamerExplosionCreator_registrator : core
• RotamerExplosionOP : core::pack::task::operation
• RotamerFeaturesCOP : protocols::features
• RotamerFeaturesOP : protocols::features
• rotameric_chi_mimic_EX_flags : protocols::match::upstream
• rotameric_chi_partition_sd_range : protocols::match::upstream
• rotameric_chi_step_by_value : protocols::match::upstream
• rotameric_chi_step_wi_sd_range : protocols::match::upstream
• RotamerLibraryCOP : core::pack::dunbrack
• RotamerLibraryOP : core::pack::dunbrack
• RotamerLibraryScratchSpaceCOP : core::pack::dunbrack
• RotamerLibraryScratchSpaceOP : core::pack::dunbrack
• RotamerLinksCOP : core::pack::rotamer_set
• RotamerLinksOP : core::pack::rotamer_set
• RotamerOperationCOP : core::pack::rotamer_set
• RotamerOperationOP : core::pack::rotamer_set
• RotamerOperations : core::pack::rotamer_set
• RotamerRecoveryCOP : protocols::rotamer_recovery
• RotamerRecoveryFactoryCOP : protocols::rotamer_recovery
• RotamerRecoveryFactoryOP : protocols::rotamer_recovery
• RotamerRecoveryFeaturesCOP : protocols::features
• RotamerRecoveryFeaturesOP : protocols::features
• RotamerRecoveryMoverCOP : protocols::rotamer_recovery
• RotamerRecoveryMoverOP : protocols::rotamer_recovery
• RotamerRecoveryOP : protocols::rotamer_recovery
• RotamerReporterCOP : protocols::rotamer_recovery
• RotamerReporterSimpleCOP : protocols::rotamer_recovery
• RotamerReporterSQLiteCOP : protocols::rotamer_recovery
• Rotamers : core::pack::rotamer_set
• rotamers_for_trials() : protocols::ligand_docking
• RotamerSetBaseCOP : core::conformation
• RotamerSetBaseOP : core::conformation
• RotamerSetCOP : core::pack::rotamer_set
• RotamerSetFactoryOP : core::pack::rotamer_set
• RotamerSetOP : core::pack::rotamer_set
• RotamerSetOperationCOP : core::pack::rotamer_set
• RotamerSetOperationOP : core::pack::rotamer_set
• RotamerSetsBaseCOP : core::pack::rotamer_set
• RotamerSetsBaseOP : core::pack::rotamer_set
• RotamerSetsCOP : core::pack::rotamer_set
• RotamerSetsOP : core::pack::rotamer_set
• RotamerSetVector : core::pack::rotamer_set::symmetry
• RotamerSubsetsCOP : core::pack::rotamer_set
• RotamerSubsetsOP : core::pack::rotamer_set
• RotamerTracer() : protocols::RotamerDump
• RotamerTrialsMinMoverCOP : protocols::simple_moves
• RotamerTrialsMinMoverOP : protocols::simple_moves
• RotamerTrialsMoverCOP : protocols::simple_moves
• RotamerTrialsMoverOP : protocols::simple_moves
• RotamerTrieBaseCOP : core::scoring::trie
• RotamerTrieBaseOP : core::scoring::trie
• RotamerVector : core::pack::dunbrack
• rotate() : protocols::swa
• rotate_anchor_to_x_axis() : core::pose::symmetry
• rotate_tracer() : protocols::ligand_docking
• rotate_vec() : protocols::toolbox
• RotateCOP : protocols::ligand_docking
• RotateCOPs : protocols::ligand_docking
• RotateJumpAxisMoverCOP : protocols::rigid
• RotateJumpAxisMoverOP : protocols::rigid
• RotateOP : protocols::ligand_docking
• RotateOPs : protocols::ligand_docking
• rotates_tracer() : protocols::ligand_docking
• RotatesCOP : protocols::ligand_docking
• RotatesCOPs : protocols::ligand_docking
• RotatesOP : protocols::ligand_docking
• RotatesOPs : protocols::ligand_docking
• RotPair : core::scoring::packstat
• rots_from_pose() : protocols::comparative_modeling
• RotSetOperationList : core::pack::rotamer_set
• RotSetOperationListIterator : core::pack::rotamer_set
• rottrials_RG() : core::pack
• RotVec : protocols::MakeRotLib
• RotVector : core::pack::dunbrack
• round() : protocols::noesy_assign
• RRComparerAutomorphicRMSDCOP : protocols::rotamer_recovery
• RRComparerAutomorphicRMSDOP : protocols::rotamer_recovery
• RRComparerChiDiffCOP : protocols::rotamer_recovery
• RRComparerChiDiffOP : protocols::rotamer_recovery
• RRComparerCOP : protocols::rotamer_recovery
• RRComparerCreatorCOP : protocols::rotamer_recovery
• RRComparerCreatorOP : protocols::rotamer_recovery
• RRComparerOP : protocols::rotamer_recovery
• RRComparerRotBinsCOP : protocols::rotamer_recovery
• RRComparerRotBinsOP : protocols::rotamer_recovery
• RRProtocolCOP : protocols::rotamer_recovery
• RRProtocolCreatorCOP : protocols::rotamer_recovery
• RRProtocolCreatorOP : protocols::rotamer_recovery
• RRProtocolMinPackCOP : protocols::rotamer_recovery
• RRProtocolMinPackOP : protocols::rotamer_recovery
• RRProtocolMoverCOP : protocols::rotamer_recovery
• RRProtocolMoverOP : protocols::rotamer_recovery
• RRProtocolOP : protocols::rotamer_recovery
• RRProtocolPackRotamersCOP : protocols::rotamer_recovery
• RRProtocolPackRotamersOP : protocols::rotamer_recovery
• RRProtocolReferenceStructureCOP : protocols::rotamer_recovery
• RRProtocolReferenceStructureOP : protocols::rotamer_recovery
• RRProtocolRotamerTrialsCOP : protocols::rotamer_recovery
• RRProtocolRotamerTrialsOP : protocols::rotamer_recovery
• RRProtocolRTMinCOP : protocols::rotamer_recovery
• RRProtocolRTMinOP : protocols::rotamer_recovery
• RRReporterCreatorCOP : protocols::rotamer_recovery
• RRReporterCreatorOP : protocols::rotamer_recovery
• RRReporterHumanCOP : protocols::rotamer_recovery
• RRReporterHumanOP : protocols::rotamer_recovery
• RRReporterOP : protocols::rotamer_recovery
• RRReporterSimpleOP : protocols::rotamer_recovery
• RRReporterSQLiteOP : protocols::rotamer_recovery
• rsd_set_from_cmd_line() : core::chemical
• rsigma : core::scoring
• Rsmn2x2 : protocols::fldsgn::topology
• Rsmn3x3 : protocols::fldsgn::topology
• Rsmn3x3_Half : protocols::fldsgn::topology
• RT_from_epos() : protocols::jumping
• RTAP : core::kinematics
• rtmin_RG() : core::pack
• RTOP : core::kinematics
• RuleAP : core::coarse
• RuleCAP : core::coarse
• RuleCOP : core::coarse
• RuleOP : core::coarse
• RuleSetCOP : core::coarse
• RuleSetOP : core::coarse
• run_boinc_debug() : protocols::abinitio
• run_calculator() : protocols::forge::remodel
• rvec : protocols::scoring , protocols::toolbox , core::scoring
• rvec5 : core::scoring