Here is a list of all namespace members with links to the namespace documentation for each member:

- t -

• t() : core::scoring::hbonds
• T() : core::pack::interaction_graph , core::pack::task , core::scoring , core::pack::interaction_graph
• TableEnergy : core::scoring
• TableProbability : core::scoring
• TabooSamplingKinematicPerturberCOP : protocols::loops::loop_closure::kinematic_closure
• TabooSamplingKinematicPerturberOP : protocols::loops::loop_closure::kinematic_closure
• tag_from_line() : core::chemical
• tag_from_pose() : core::pose
• tag_into_pose() : core::pose
• TagPtr : protocols::filters , protocols::jd2
• TagPtrs : protocols::jd2
• TagScoreMap : core::import_pose::atom_tree_diffs
• TagScorePair : core::import_pose::atom_tree_diffs
• TargetRotamerCoordsCOP : protocols::match::downstream
• TargetRotamerCoordsOP : protocols::match::downstream
• TaskAwareCstsCOP : protocols::protein_interface_design::movers
• TaskAwareCstsOP : protocols::protein_interface_design::movers
• TaskAwareMinMoverCOP : protocols::simple_moves
• TaskAwareMinMoverOP : protocols::simple_moves
• TaskFactoryCOP : core::pack::task
• TaskFactoryOP : core::pack::task
• TaskFactorySP : core::pack::task
• TaskOperationCOP : core::pack::task::operation
• TaskOperationCreatorCOP : core::pack::task::operation
• TaskOperationCreatorOP : core::pack::task::operation
• TaskOperationFactoryCOP : core::pack::task::operation
• TaskOperationFactoryOP : core::pack::task::operation
• TaskOperationOP : core::pack::task::operation
• TaskOperationSP : core::pack::task::operation
• tccd() : protocols::loops::loop_closure::ccd
• tear_down_constraints() : protocols::star
• TemlateAssemblyCOP : protocols::hybridization
• TemlateAssemblyOP : protocols::hybridization
• TemperatureControllerAP : protocols::moves
• TemperatureControllerCAP : protocols::moves
• TemperatureControllerCOP : protocols::canonical_sampling , protocols::moves
• TemperatureControllerOP : protocols::canonical_sampling , protocols::moves
• TemperedDockingOP : protocols::docking
• TemperingBaseAP : protocols::canonical_sampling
• TemperingBaseCAP : protocols::canonical_sampling
• TemperingBaseCOP : protocols::canonical_sampling
• TemperingBaseOP : protocols::canonical_sampling
• TemplateCOP : protocols::abinitio
• TemplateFragmentClaimerAP : protocols::topology_broker
• TemplateFragmentClaimerCAP : protocols::topology_broker
• TemplateFragmentClaimerCOP : protocols::topology_broker
• TemplateFragmentClaimerOP : protocols::topology_broker
• TemplateHistoryCOP : protocols::hybridization
• TemplateHistoryOP : protocols::hybridization
• TemplateJumpClaimerAP : protocols::topology_broker
• TemplateJumpClaimerCAP : protocols::topology_broker
• TemplateJumpClaimerCOP : protocols::topology_broker
• TemplateJumpClaimerOP : protocols::topology_broker
• TemplateJumpSetupCOP : protocols::abinitio
• TemplateJumpSetupOP : protocols::abinitio
• TemplateOP : protocols::abinitio
• templates_from_cmd_line() : protocols::comparative_modeling
• TemplatesCOP : protocols::abinitio
• TemplatesOP : protocols::abinitio
• ten_A_neighbor_graph : core::scoring
• TenANeighborGraphCOP : core::scoring
• TenANeighborGraphOP : core::scoring
• Tensor : core::scoring , protocols::scoring
• Tensor5 : core::scoring
• TermInfo : protocols::sic_dock
• test_res_res_aln() : protocols::protein_interface_design::movers
• tether_ligand_tracer() : protocols::ligand_docking
• TetherLigandCOP : protocols::ligand_docking
• TetherLigandCOPs : protocols::ligand_docking
• TetherLigandOP : protocols::ligand_docking
• TetherLigandOPs : protocols::ligand_docking
• TEXT_BUFSIZE : protocols::boinc
• ThermodynamicMoverCOP : protocols::canonical_sampling
• ThermodynamicMoverOP : protocols::canonical_sampling
• ThermodynamicObserverCOP : protocols::canonical_sampling
• ThermodynamicObserverOP : protocols::canonical_sampling
• THETA : core::id
• Thio : protocols::fldsgn::topology
• Thioredoxin : protocols::fldsgn::topology
• ThreadingJobCOP : protocols::comparative_modeling
• ThreadingJobInputterCOP : protocols::comparative_modeling
• ThreadingJobInputterOP : protocols::comparative_modeling
• ThreadingJobOP : protocols::comparative_modeling
• ThreadSequenceOperationCOP : protocols::toolbox::task_operations
• ThreadSequenceOperationOP : protocols::toolbox::task_operations
• THREE : core::pack::dunbrack
• three_atom_set : core::chemical , core::scoring::mm
• THREEDGRID : core::conformation
• TimeEvaluatorCOP : protocols::evaluation
• TimeEvaluatorOP : protocols::evaluation
• TMalign_poses() : protocols::hybridization
• to_centroid() : protocols::medal , protocols::star
• Tokenize() : protocols , protocols::rbsegment_relax , protocols::swa::rna
• tokenize_line() : core::pack::task
• TOL_H_DIRECT() : protocols::noesy_assign
• TOL_H_INDIRECT() : protocols::noesy_assign
• TOL_LABEL() : protocols::noesy_assign
• Top7 : protocols::fldsgn::topology
• TopologyBrokerAP : protocols::topology_broker
• TopologyBrokerCAP : protocols::topology_broker
• TopologyBrokerCOP : protocols::topology_broker
• TopologyBrokerOP : protocols::topology_broker
• TopologyClaimerAP : protocols::topology_broker
• TopologyClaimerCAP : protocols::topology_broker
• TopologyClaimerCOP : protocols::topology_broker
• TopologyClaimerOP : protocols::topology_broker
• TopOutFuncCOP : core::scoring::constraints
• TopOutFuncOP : core::scoring::constraints
• tors_deriv_to_cartesian() : core::optimization
• torsion2big_bin_id() : protocols::frag_picker::quota
• torsion_constraints_from_chi_rotamers() : protocols::ligand_docking
• torsion_constraints_from_mean_sd() : protocols::ligand_docking
• torsion_constraints_from_rotamers() : protocols::ligand_docking
• torsional_derivative_from_cartesian_derivatives() : core::optimization
• TorsionBin : protocols::comparative_modeling::features
• TorsionBinSimilarityCOP : protocols::frag_picker::scores
• TorsionBinSimilarityOP : protocols::frag_picker::scores
• TorsionCOP : protocols::protein_interface_design::filters
• TorsionDOFMoverCOP : protocols::simple_moves
• TorsionDOFMoverOP : protocols::simple_moves
• TorsionFeatureCOP : protocols::comparative_modeling::features
• TorsionFeatureOP : protocols::comparative_modeling::features
• TorsionFourierComponentCOP : core::scoring::dna
• TorsionFourierComponentOP : core::scoring::dna
• TorsionFragmentLibraryCOP : protocols::frags
• TorsionFragmentLibraryOP : protocols::frags
• TorsionFragmentOP : protocols::frags
• TorsionInfo : core::fragment
• TorsionInfoList : core::fragment
• TorsionInfoSetCOP : core::fragment
• TorsionOP : protocols::protein_interface_design::filters
• TorsionRestrictedKinematicPerturberCOP : protocols::loops::loop_closure::kinematic_closure
• TorsionRestrictedKinematicPerturberOP : protocols::loops::loop_closure::kinematic_closure
• TorsionSamplingKinematicPerturberCOP : protocols::loops::loop_closure::kinematic_closure
• TorsionSamplingKinematicPerturberOP : protocols::loops::loop_closure::kinematic_closure
• TorsionSweepingKinematicPerturberCOP : protocols::loops::loop_closure::kinematic_closure
• TorsionSweepingKinematicPerturberOP : protocols::loops::loop_closure::kinematic_closure
• TorsionType : core::id
• total_energy_from_pose() : core::pose
• TOTAL_NUM_CRITERIA : core::conformation::symmetry
• total_score : core::scoring
• ToUpper() : core::scoring::packstat
• tr() : protocols::jumping
• TR() : protocols::loophash , protocols::loops
• tr() : protocols::loops
• TR() : protocols::loops::loop_closure::kinematic_closure , protocols::loops::loop_mover::perturb
• tr() : protocols::loops::loop_closure::ccd
• TR() : protocols::loops::loop_mover::perturb
• tr() : protocols::loops::loop_closure::ccd
• TR() : protocols::loops::loop_mover::perturb , protocols::loops::loop_mover::refine
• tr() : protocols::loops::loop_closure::ccd
• TR() : protocols::loops::loop_mover::refine
• tr() : protocols::loops::loop_closure::ccd
• TR() : protocols::loops::loop_mover::refine , protocols , protocols::wum2 , protocols::wum
• tr() : protocols::loops
• TR() : protocols::loops::loops_definers , protocols::wum , protocols::vip , protocols::toolbox::pose_metric_calculators , protocols::toolbox::pose_manipulation , protocols::toolbox::match_enzdes_util , protocols::loops::loops_definers , protocols::symmetric_docking
• tr() : protocols::loops
• TR() : protocols::loops , protocols::match , protocols::simple_moves::symmetry , protocols::simple_moves , protocols::simple_moves::sidechain_moves , protocols::simple_moves
• tr() : protocols::loops::loops_definers
• TR() : protocols::simple_moves::rational_mc , protocols::simple_moves , protocols::match::downstream , protocols::simple_moves
• tr() : protocols::loops
• TR() : protocols::simple_moves , protocols::simple_moves::asym_fold_and_dock , protocols::simple_filters , protocols::match::downstream , protocols::simple_filters
• tr() : protocols::match
• TR() : protocols::simple_filters , protocols::match::downstream , protocols::simple_filters , protocols::sic_dock , protocols::seeded_abinitio
• tr() : protocols::match
• TR() : protocols::rotamer_recovery , protocols::match::downstream
• tr() : protocols::moves
• TR() : protocols::match , protocols::rotamer_recovery , protocols::rosetta_scripts , protocols::match , protocols::rigid
• tr() : protocols::protein_interface_design::filters
• TR() : protocols::rbsegment_relax , protocols::match::output , protocols::qsar , protocols::protein_interface_design::movers
• tr() : protocols::protein_interface_design::movers
• TR() : protocols::protein_interface_design::movers , protocols::match::output , protocols::match::upstream , protocols::protein_interface_design::movers
• tr() : protocols::rbsegment_relax
• TR() : protocols::protein_interface_design::movers , protocols::medal
• tr() : protocols::rna
• TR() : protocols::protein_interface_design::movers , protocols::motifs , protocols::protein_interface_design::movers , protocols::moves
• tr() : protocols::rna
• TR() : protocols::protein_interface_design::movers , protocols::moves , protocols::protein_interface_design::movers , protocols::moves
• tr() : protocols::rna
• TR() : protocols::protein_interface_design::movers , protocols::moves , protocols::protein_interface_design::filters , protocols::moves
• tr() : protocols::rotamer_recovery
• TR() : protocols::protein_interface_design::filters , protocols::moves
• tr() : protocols::simple_filters
• TR() : protocols::multistate_design , protocols::nonlocal , protocols::protein_interface_design::filters , protocols::pockets
• tr() : protocols::simple_moves
• TR() : protocols::pmut_scan , protocols::nonlocal , protocols::pack_daemon , protocols::outputter
• tr() : protocols::simple_moves
• TR() : protocols::outputter , protocols::nonlocal , protocols::optimize_weights
• tr() : protocols::sparta
• TR() : protocols::optimize_weights
• tr() : protocols::sparta
• TR() : protocols::optimize_weights
• tr() : protocols::toolbox
• TR() : protocols::outputter
• tr() : protocols::toolbox , protocols::toolbox::match_enzdes_util
• TR() : protocols::pack_daemon , protocols::pb_potential
• tr() : protocols::toolbox::match_enzdes_util
• TR() : protocols::pockets
• tr() : protocols::toolbox::match_enzdes_util
• TR() : protocols::protein_interface_design::filters
• tr() : protocols::toolbox::rotamer_set_operations
• TR() : protocols::protein_interface_design::filters
• tr() : protocols::toolbox::rotamer_set_operations
• TR() : protocols::protein_interface_design::filters
• tr() : protocols::toolbox
• TR() : core::chemical::orbitals , protocols::protein_interface_design::filters , core::chemical , core::coarse , protocols::protein_interface_design::filters , core::conformation , core::conformation::symmetry , protocols::protein_interface_design::movers , core::conformation::symmetry , protocols::protein_interface_design::movers , core::conformation::symmetry , core::fragment::picking_old::vall::eval , protocols::protein_interface_design::movers , core::fragment::picking_old::vall::eval , protocols::protein_interface_design::movers , core::fragment::picking_old::vall , core::import_pose , protocols::loophash , protocols::protein_interface_design::movers , protocols::loophash , protocols::protein_interface_design::movers , core , protocols::loophash , protocols::protein_interface_design::movers , protocols::ligand_docking , core::io::pdb , protocols::protein_interface_design::movers , protocols::ligand_docking , core::io::pdb , protocols::jd2 , protocols::jd2::parser , core::io::pdb , protocols::protein_interface_design::movers , protocols::jd2 , protocols::protein_interface_design::movers , protocols::inputter , core::io::raw_data , core::io::sequence_comparation , protocols::protein_interface_design::movers , protocols::inputter , protocols::idealize , core::kinematics , protocols::hybridization , protocols::hotspot_hashing , core::kinematics::tree , protocols::qsar::scoring_grid , protocols::hotspot_hashing::movers , protocols::hotspot_hashing , protocols::rbsegment_relax , protocols::frag_picker , core::kinematics , core::optimization , protocols::forge::remodel , protocols::relax , protocols::forge::remodel , core::optimization
• tr() : core::chemical
• TR() : protocols::forge::methods , protocols::forge::components , core::optimization , protocols::rna , core::optimization
• tr() : core::chemical
• TR() : core::optimization , protocols::flexpack::interaction_graph , protocols::flexpack::annealer , protocols::fldsgn::potentials , core::optimization::symmetry , protocols::fldsgn
• tr() : core::chemical
• TR() : core::pack::annealer , protocols::filters , protocols::rotamer_recovery , protocols::fibril , protocols::features , protocols::rotamer_recovery , core::pack::annealer , protocols::features , protocols::rotamer_recovery , protocols::features , protocols::rotamer_recovery
• tr() : core::chemical
• TR() : protocols::features , core::pack::annealer , protocols::features , core::pack::dunbrack
• tr() : core::chemical
• TR() : core::pack::dunbrack , protocols::features , protocols::rotamer_recovery , protocols::enzdes , protocols::electron_density , core::pack::dunbrack
• tr() : core::chemical
• TR() : protocols::dna , core::pack::interaction_graph , protocols::dna , core::pack::interaction_graph
• tr() : core::chemical
• TR() : protocols::design_opt , core::pack , protocols::constraints_additional , protocols::simple_filters , protocols::cartesian , protocols::canonical_sampling::mc_convergence_checks , protocols::abinitio , core::pack
• tr() : core::chemical
• TR() : core::pack::rotamer_set , core::pack
• tr() : core::chemical
• TR() : core::scoring::packing , core::scoring::orbitals , core::scoring::nv , core::pack , core::scoring::mm , protocols::simple_filters , core::pack::task::operation , core::scoring::mm , core::scoring::methods
• tr() : core::chemical
• TR() : core::scoring::methods , core::pack::task::operation , core::scoring , core::scoring::interface
• tr() : core::chemical
• TR() : core::scoring::electron_density_atomwise , core::scoring::electron_density , protocols::wum , core::scoring::electron_density , protocols::toolbox::match_enzdes_util , core::scoring::disulfides , protocols::star , core::pack::task::operation , core::scoring::constraints , protocols::simple_moves , core::scoring::constraints , protocols::simple_moves , core::pose , core::pose::symmetry , core::pose , protocols::simple_moves , protocols::simple_filters , core::pack::task::operation
• tr() : core::chemical::rna
• TR() : core::pack::task::operation , core::pack::task
• tr() : core::fragment
• TR() : core::pose
• tr() : core::fragment
• TR() : core::scoring , protocols::simple_moves
• tr() : core::fragment
• TR() : core::scoring::constraints
• tr() : core::fragment
• TR() : core::scoring::disulfides , protocols::simple_moves::symmetry , core::scoring::disulfides
• tr() : core::fragment
• TR() : core::scoring::dna
• tr() : core::fragment
• TR() : core::scoring::electron_density , protocols::wum
• tr() : core::id , core::import_pose
• TR() : core::scoring::electron_density_atomwise
• tr() : core::import_pose , core::import_pose::pose_stream
• TR() : core::scoring::methods , core::scoring::methods::dfire
• tr() : core::import_pose::pose_stream , core::io::silent
• TR() : core::scoring::methods
• tr() : core::io::silent
• TR() : core::scoring::mm
• tr() : core::io::silent
• TR() : core::scoring::mm
• tr() : core::io::silent
• TR() : core::scoring::packing , core::scoring::saxs
• tr() : core::kinematics
• TR() : core::scoring::symmetry , core::util
• tr() : core::kinematics
• TR() : core::util
• tr() : core::pack::task , core::pose
• TR() : protocols::checkpoint , protocols::coarse_rna
• tr() : core::scoring::constraints
• TR() : protocols::contact_map
• tr() : core::scoring::constraints , core::scoring::custom_pair_distance
• TR() : protocols::dna
• tr() : core::scoring::dssp , core::scoring::geometric_solvation
• TR() : protocols::dna
• tr() : core::scoring::hbonds
• TR() : protocols::dna , protocols::electron_density
• tr() : core::scoring::hbonds
• TR() : protocols::enzdes
• tr() : core::scoring::methods
• TR() : protocols::features
• tr() : core::scoring::methods
• TR() : protocols::features
• tr() : core::scoring
• TR() : protocols::features
• tr() : core::scoring , protocols::jumping
• TR() : protocols::loophash
• tr() : protocols::jumping
• TR() : protocols::loophash
• tr() : protocols::jobdist
• TR() : protocols::loop_build
• tr() : protocols::jd2 , core::sequence , protocols::jd2
• TR() : protocols::jobdist
• tr() : protocols::frag_picker::scores
• TR() : protocols::jd2::parser
• tr() : protocols::frag_picker::scores
• TR() : protocols::jd2 , protocols::inputter , protocols::features
• tr() : protocols::frag_picker
• TR() : protocols::hybridization
• tr() : protocols::features
• TR() : protocols::hotspot_hashing
• tr() : protocols::evaluation
• TR() : protocols::genetic_algorithm
• tr() : protocols::enzdes
• TR() : protocols::features
• tr() : protocols::enzdes
• TR() : protocols::forge::remodel
• tr() : protocols::enzdes
• TR() : protocols::forge::remodel
• tr() : protocols::enzdes::enzutil
• TR() : protocols::forge::components , protocols::forge::build
• tr() : core::sequence , protocols::comparative_modeling
• TR() : protocols::fldsgn::potentials
• tr() : protocols::cluster
• TR() : protocols::filters
• tr() : core::sequence
• TR() : protocols::fibril
• tr() : core::sequence
• TR() : protocols::features
• tr() : core::sequence
• TR() : protocols::features
• tr() : core::sequence , protocols::canonical_sampling
• TR() : protocols::filters
• tr() : protocols::comparative_modeling
• TR() : protocols::flexpack::rotamer_set , protocols::forge::build
• tr() : protocols::comparative_modeling
• TR() : protocols::forge::build
• tr() : protocols::enzdes
• TR() : protocols::forge::methods
• tr() : protocols::enzdes
• TR() : protocols::frag_picker::nonlocal
• tr() : protocols::evaluation , protocols::features
• TR() : protocols::hotspot_hashing
• tr() : protocols::flexpack , protocols::frag_picker
• TR() : protocols::inputter
• tr() : protocols::frag_picker , protocols::frag_picker::scores
• TR() : protocols::jd2::parser
• tr() : protocols::hotspot_hashing , protocols::jd2
• TR() : protocols::ligand_docking
• tr() : protocols::jd2 , protocols::jumping
• TR() : protocols::loophash
• tr() : protocols::jumping
• TR_BGEDGE() : core::pack::interaction_graph
• TR_BGNODE() : core::pack::interaction_graph
• TR_call_order() : protocols::rosetta_scripts
• TR_ccd() : protocols::seeded_abinitio , protocols::protein_interface_design::movers
• TR_cst() : protocols::protein_interface_design::movers
• TR_database() : protocols::protein_interface_design::filters
• TR_debug() : protocols::seeded_abinitio
• TR_DI() : protocols::toolbox::pose_manipulation
• TR_dump_pdb_dummy() : core::io::pdb , core::import_pose
• TR_EDGE() : core::pack::interaction_graph
• TR_hh() : protocols::moves
• TR_HIG() : core::pack::interaction_graph
• TR_NODE() : core::pack::interaction_graph
• TR_PatchOperations() : core::chemical
• TR_pcs_d() : protocols::scoring::methods::pcs
• TR_PCS_d_i() : protocols::scoring::methods::pcs
• TR_pcs_d_p_l() : protocols::scoring::methods::pcs
• TR_PCS_Energy() : protocols::scoring::methods::pcs
• TR_PcsDataCenter() : protocols::scoring::methods::pcs2
• TR_PcsDataCenterManager() : protocols::scoring::methods::pcs2
• TR_PcsDataCenterManagerSingleton() : protocols::scoring::methods::pcs2
• TR_PcsDataLanthanide() : protocols::scoring::methods::pcs2
• TR_PcsEnergy() : protocols::scoring::methods::pcs2
• TR_PcsEnergyParameter() : protocols::scoring::methods::pcs2
• TR_PcsEnergyParameterManager() : protocols::scoring::methods::pcs2
• TR_PcsInputCenter() : protocols::scoring::methods::pcs2
• TR_PcsInputCenterManager() : protocols::scoring::methods::pcs2
• TR_PcsInputFile() : protocols::scoring::methods::pcs2
• TR_PcsInputLine() : protocols::scoring::methods::pcs2
• TR_REMODEL() : protocols::forge::remodel
• TR_report() : protocols::protein_interface_design::movers , protocols::rosetta_scripts
• TR_residue_scan() : protocols::protein_interface_design::filters
• TR_seg() : protocols::rbsegment_relax
• TR_spec() : protocols::dna
• TR_STATS() : core::pack::interaction_graph
• TR_TensorsOptimizer() : protocols::scoring::methods::pcs2
• TR_TensorsOptimizerFix() : protocols::scoring::methods::pcs2
• TR_TensorsOptimizerSvd() : protocols::scoring::methods::pcs2
• TR_tsr_opt() : protocols::scoring::methods::pcs
• TR_VERBOSE() : protocols::optimize_weights
• trABEGO_SS_Config() : protocols::frag_picker::quota
• trABEGO_SS_Pool() : protocols::frag_picker::quota
• trABEGO_SS_Score() : protocols::frag_picker::scores
• traced_dump_pdb() : core::io::pdb
• traceIter : core::scoring::packstat
• TRACER() : core::scoring::constraints
• tracer() : protocols::frag_picker
• traces : core::scoring::packstat
• trAdaptiveScoreHistogram() : protocols::frag_picker::scores
• TrajectoryRecorderOP : protocols::canonical_sampling
• TrajectoryState : protocols::viewer::graphics_states_param
• trAmbigCSScore() : protocols::frag_picker::scores
• trans_omega() : protocols::forge::methods
• transfer_jumps() : core::pose
• transfer_phi_psi() : core::pose
• transform_pose() : protocols::protein_interface_design
• transform_tracer() : protocols::ligand_docking
• transformMove : protocols::ligand_docking
• transitive_map() : core::sequence
• translate() : protocols::swa
• translate_and_rotate_residue_to_origin() : protocols::swa
• translate_then_rotate_pose() : protocols::swa::rna
• translate_tracer() : protocols::ligand_docking
• translate_virtual_anchor_to_first_rigid_body() : protocols::rna
• TranslateCOP : protocols::ligand_docking
• TranslateCOPs : protocols::ligand_docking
• TranslateOP : protocols::ligand_docking
• TranslateOPs : protocols::ligand_docking
• TranslatorCAP : core::coarse
• TranslatorCOP : core::coarse
• TranslatorOP : core::coarse
• TranslatorSetCOP : core::coarse
• TranslatorSetOP : core::coarse
• trAtomBasedConstraintsScore() : protocols::frag_picker::scores
• trAtomPairConstraintsScore() : protocols::frag_picker::scores
• trBestTotalScoreSelector() : protocols::frag_picker
• TRBM() : protocols::rigid
• TRcs() : core::scoring::packstat
• trCSScore() : protocols::frag_picker::scores
• trCustomScoreSelector() : protocols::frag_picker
• trDihedralConstraintsScore() : protocols::frag_picker::scores
• trDiversifyCrmsdByClustering() : protocols::frag_picker
• trDiversifyCrmsdSelector() : protocols::frag_picker
• trDiversifyDihedralsSelector() : protocols::frag_picker
• trDMEScore() : protocols::frag_picker::scores
• tree_distance() : protocols::backrub
• TreeBuilderCOP : protocols::nonlocal
• TreeBuilderOP : protocols::nonlocal
• trFormFactor() : core::scoring::saxs
• trFormFactorManager() : core::scoring::saxs
• trFragmentCandidate() : protocols::frag_picker
• trg_RG() : protocols::enzdes
• trGunnCost() : protocols::frag_picker::scores , protocols::simple_moves
• trGunnScore() : protocols::frag_picker::scores
• TrialMoverCOP : protocols::moves
• TrialMoverOP : protocols::moves
• tricubic_interpolation() : core::pack::dunbrack
• trie_vs_path() : core::scoring::trie
• trie_vs_trie() : core::scoring::trie
• TrieCollectionCOP : core::scoring::trie
• TrieCollectionOP : core::scoring::trie
• TrieCountPairBaseCOP : core::scoring::trie
• TrieCountPairBaseOP : core::scoring::trie
• TrieCountPairGenericCOP : core::scoring::etable::etrie
• TrieCountPairGenericOP : core::scoring::etable::etrie
• Trig : core
• Trigger : protocols::medal
• Triggers : protocols::simple_moves::rational_mc
• trim_back_sequence_mapping() : protocols::loops
• TRIMETHYLATION : core::chemical
• trInterbondAngleScore() : protocols::frag_picker::scores
• TripleBond : core::chemical
• trJCoupling() : protocols::frag_picker::scores
• trJCouplingIO() : protocols::frag_picker
• trKillHairpinsIO() : core::scoring
• trMinMultiHarmonicFunc() : core::scoring::constraints
• trPartialSecondarySimilarity() : protocols::frag_picker::scores
• trPdbFilter() : protocols::frag_picker
• trPDDFEnergy() : protocols::scoring::methods::saxs
• trPhiPsiRmsd() : protocols::frag_picker::scores
• trProfScore() : protocols::frag_picker::scores
• trProfScoreBlosum62() : protocols::frag_picker::scores
• trProfScoreDistWeight() : protocols::frag_picker::scores
• trProfScoreL1() : protocols::frag_picker::scores
• trProfScoreSubMatrix() : protocols::frag_picker::scores
• trQuotaCollector() : protocols::frag_picker::quota
• trQuotaConfig() : protocols::frag_picker::quota
• trQuotaSelector() : protocols::frag_picker::quota
• trRDCScore() : protocols::frag_picker::scores
• trRmsScore() : protocols::frag_picker::scores
• trSAXSEnergy() : core::scoring::saxs
• trSecondarySimilarity() : protocols::frag_picker::scores
• trSecondaryStructurePool() : protocols::frag_picker::quota
• trTalosSSSimilarity() : protocols::frag_picker::scores
• trTorsionBinPool() : protocols::frag_picker::quota
• TS() : protocols::rbsegment_relax
• tt() : core::pack , protocols::loops , core::pack::rotamer_set , core::pack::rotamer_set::symmetry , core::pack::rotamer_set
• tw() : core::chemical
• twelve_A_neighbor_graph : core::scoring
• TwelveANeighborGraphCOP : core::scoring
• TwelveANeighborGraphOP : core::scoring
• TWO : core::pack::dunbrack
• two_atom_set : core::scoring::mm , core::chemical
• TwoBodyEnergyCOP : core::scoring::methods
• TwoBodyEnergyOP : core::scoring::methods
• type2name() : protocols::frag_picker
• type_map_add() : core::scoring::packstat
• typerBond : core::chemical::sdf
• TypesMap : protocols::dna
• TZ() : protocols::simple_moves::symmetry , protocols::hybridization