- c -

• CaCbCb_Angle_FuncAP : core::scoring::disulfides
• CaCbCb_Angle_FuncCAP : core::scoring::disulfides
• CaCbCb_Angle_FuncCOP : core::scoring::disulfides
• CaCbCb_Angle_FuncOP : core::scoring::disulfides
• CaCbCbCa_Dihedral_FuncAP : core::scoring::disulfides
• CaCbCbCa_Dihedral_FuncCAP : core::scoring::disulfides
• CaCbCbCa_Dihedral_FuncCOP : core::scoring::disulfides
• CaCbCbCa_Dihedral_FuncOP : core::scoring::disulfides
• CacheableAtomID_MapVectorAP : core::id
• CacheableAtomID_MapVectorCAP : core::id
• CacheableAtomID_MapVectorCOP : core::id
• CacheableAtomID_MapVectorOP : core::id
• CacheableAtomPairFuncMapCOP : core::scoring::custom_pair_distance
• CacheableAtomPairFuncMapOP : core::scoring::custom_pair_distance
• CacheableObserverAP : core::pose::datacache
• CacheableObserverCAP : core::pose::datacache
• CacheableObserverCOP : core::pose::datacache
• CacheableObserverOP : core::pose::datacache
• CacheablePoseRawPtrAP : core::pose::datacache
• CacheablePoseRawPtrCAP : core::pose::datacache
• CacheablePoseRawPtrCOP : core::pose::datacache
• CacheablePoseRawPtrOP : core::pose::datacache
• CacheableSequenceProfileAP : core::sequence
• CacheableSequenceProfileCAP : core::sequence
• CacheableSequenceProfileCOP : core::sequence
• CacheableSequenceProfileOP : core::sequence
• CachingScoringMethodCOP : protocols::frag_picker::scores
• CachingScoringMethodOP : protocols::frag_picker::scores
• CalculatorFilterCOP : protocols::filters
• CalculatorFilterOP : protocols::filters
• CalibrationTypeCumulator : protocols::noesy_assign
• Candidate : protocols::frag_picker , protocols::frag_picker::nonlocal
• Candidates : protocols::frag_picker
• CandidatesCollectorCOP : protocols::frag_picker
• CandidatesCollectorOP : protocols::frag_picker
• CandidatesSink : protocols::frag_picker
• CanonicalSamplingMoverCOP : protocols::canonical_sampling , protocols::moves
• CanonicalSamplingMoverOP : protocols::canonical_sampling , protocols::moves
• CarbohydrateInfoCOP : core::chemical::carbohydrates
• CarbohydrateInfoOP : core::chemical::carbohydrates
• CarbonHBondPotentialCOP : core::scoring::carbon_hbonds
• CarbonHBondPotentialOP : core::scoring::carbon_hbonds
• CArray_Energy : core::scoring
• CArray_TableEnergy : core::scoring
• CArrayP_Energy : core::scoring
• CArrayP_TableEnergy : core::scoring
• CartBondedParametersAP : core::scoring::methods
• CartBondedParametersCAP : core::scoring::methods
• CartBondedParametersCOP : core::scoring::methods
• CartBondedParametersOP : core::scoring::methods
• CartesianBondedEnergyAP : core::scoring::methods
• CartesianBondedEnergyCAP : core::scoring::methods
• CartesianBondedEnergyCOP : core::scoring::methods
• CartesianBondedEnergyOP : core::scoring::methods
• CartesianHybridizeCOP : protocols::hybridization
• CartesianHybridizeOP : protocols::hybridization
• CartesianMinimizerCOP : core::optimization
• CartesianMinimizerMapCOP : core::optimization
• CartesianMinimizerMapOP : core::optimization
• CartesianMinimizerOP : core::optimization
• CartesianSamplerCOP : protocols::hybridization
• CartesianSamplerOP : protocols::hybridization
• CartSCMinMinimizerMapCOP : core::pack::scmin
• CartSCMinMinimizerMapOP : core::pack::scmin
• CartSCMinMultifuncCOP : core::pack::scmin
• CartSCMinMultifuncOP : core::pack::scmin
• CavBallCIter : core::scoring::packstat
• CavBallIter : core::scoring::packstat
• CavBalls : core::scoring::packstat
• CB_Angle_FuncOP : core::scoring::disulfides
• Cb_Distance_FuncAP : core::scoring::disulfides
• Cb_Distance_FuncCAP : core::scoring::disulfides
• Cb_Distance_FuncCOP : core::scoring::disulfides
• Cb_Distance_FuncOP : core::scoring::disulfides
• CBScoreCOP : protocols::sic_dock
• CBScoreOP : protocols::sic_dock
• CBSG_Dihedral_FuncOP : core::scoring::disulfides
• CcdLoopClosureMoverCOP : protocols::loops::loop_closure::ccd
• CcdLoopClosureMoverOP : protocols::loops::loop_closure::ccd
• CcdMoverCOP : protocols::loops::loop_closure::ccd
• CcdMoverOP : protocols::loops::loop_closure::ccd
• CCDMoveWrapperOP : protocols::rbsegment_relax
• CDRH3ModelerCOP : protocols::antibody
• CDRH3ModelerOP : protocols::antibody
• CDRsMinPackMinCOP : protocols::antibody2
• CDRsMinPackMinOP : protocols::antibody2
• CellOP : core::sequence
• Cen_Distance_FuncAP : core::scoring::disulfides
• Cen_Distance_FuncCAP : core::scoring::disulfides
• Cen_Distance_FuncCOP : core::scoring::disulfides
• Cen_Distance_FuncOP : core::scoring::disulfides
• CenHBPotentialCOP : core::scoring
• CenHBPotentialOP : core::scoring
• CenListInfoOP : core::scoring
• CentroidDisulfideEnergyContainerAP : core::scoring::disulfides
• CentroidDisulfideEnergyContainerCAP : core::scoring::disulfides
• CentroidDisulfideEnergyContainerCOP : core::scoring::disulfides
• CentroidDisulfideEnergyContainerOP : core::scoring::disulfides
• CentroidDisulfideEnergyCOP : core::scoring::disulfides
• CentroidDisulfideEnergyOP : core::scoring::disulfides
• CentroidDisulfidePotentialAP : core::scoring::disulfides
• CentroidDisulfidePotentialCAP : core::scoring::disulfides
• CentroidDisulfidePotentialCOP : core::scoring::disulfides
• CentroidDisulfidePotentialOP : core::scoring::disulfides
• CentroidRelaxAP : protocols::relax
• CentroidRelaxCAP : protocols::relax
• CentroidRelaxCOP : protocols::relax
• CentroidRelaxMoverOP : protocols::surface_docking
• CentroidRelaxOP : protocols::relax
• ChainIsntOP : core::pack::task::operation
• ChainIsOP : core::pack::task::operation
• ChangeFoldTreeMoverCOP : protocols::moves
• ChangeFoldTreeMoverOP : protocols::moves
• Charge : core
• ChargeChargeFeaturesCOP : protocols::features
• ChargeChargeFeaturesOP : protocols::features
• CheckPointerCOP : protocols::checkpoint
• CheckPointerOP : protocols::checkpoint
• ChemicalShiftAnisotropyCOP : core::scoring
• ChemicalShiftAnisotropyEnergyOP : core::scoring::methods
• ChemicalShiftAnisotropyOP : core::scoring
• ChemicalShiftSequenceCOP : core::sequence
• ChemicalShiftSequenceOP : core::sequence
• ChiralMoverCOP : protocols::simple_moves::chiral
• ChiralMoverOP : protocols::simple_moves::chiral
• ChiSetCOP : core::pack::dunbrack
• ChiSetOP : core::pack::dunbrack
• ChiVector : core::pack::dunbrack
• ChunkCOP : protocols::nonlocal
• ChunkOP : protocols::nonlocal
• ChunkSetOP : protocols::rna
• ChunkTrialMoverCOP : protocols::hybridization
• ChunkTrialMoverOP : protocols::hybridization
• CircleIter : core::scoring::packstat
• Circles : core::scoring::packstat
• CircularGeneral1D_FuncCOP : core::scoring::constraints
• CircularGeneral1D_FuncOP : core::scoring::constraints
• CircularHarmonicFuncCOP : core::scoring::constraints
• CircularHarmonicFuncOP : core::scoring::constraints
• CircularPermutation_AP : protocols::fldsgn
• CircularPermutation_CAP : protocols::fldsgn
• CircularPermutation_COP : protocols::fldsgn
• CircularPermutation_OP : protocols::fldsgn
• CircularPowerFuncCOP : core::scoring::constraints
• CircularPowerFuncOP : core::scoring::constraints
• CircularSigmoidalFuncCOP : core::scoring::constraints
• CircularSigmoidalFuncOP : core::scoring::constraints
• ClaimerMessageAP : protocols::topology_broker
• ClaimerMessageCAP : protocols::topology_broker
• ClaimerMessageCOP : protocols::topology_broker
• ClaimerMessageOP : protocols::topology_broker
• ClassicAbinitioCOP : protocols::abinitio
• ClassicAbinitioOP : protocols::abinitio
• ClassicFragmentMoverCOP : protocols::simple_moves
• ClassicFragmentMoverOP : protocols::simple_moves
• ClassicMatchAlgorithmCOP : protocols::match::downstream
• ClassicMatchAlgorithmOP : protocols::match::downstream
• CloseOneCDRLoopCOP : protocols::antibody2
• CloseOneCDRLoopOP : protocols::antibody2
• CloseOneMoverCOP : protocols::antibody
• CloseOneMoverOP : protocols::antibody
• CloudPDBWriterCOP : protocols::match::output
• CloudPDBWriterOP : protocols::match::output
• ClusterBaseCOP : protocols::cluster
• ClusterBaseOP : protocols::cluster
• ClusterPhilStyleCOP : protocols::cluster
• ClusterPhilStyleOP : protocols::cluster
• CoarseEtableAP : core::coarse
• CoarseEtableCAP : core::coarse
• CoarseEtableCOP : core::coarse
• CoarseEtableOP : core::coarse
• CoarseRNA_LoopCloserOP : protocols::coarse_rna
• CoarseRotamerCOP : core::pack::dunbrack
• CoarseRotamerOP : core::pack::dunbrack
• CoarseRotamerSetCOP : core::pack::dunbrack
• CoarseRotamerSetOP : core::pack::dunbrack
• CoarseSingleResidueLibraryCOP : core::pack::dunbrack
• CoarseSingleResidueLibraryOP : core::pack::dunbrack
• CombineChainsMoverCOP : protocols::domain_assembly
• CombineChainsMoverOP : protocols::domain_assembly
• CombinedFilterCOP : protocols::filters
• CombinedFilterOP : protocols::filters
• CombinedTaskOperationOP : protocols::flxbb
• CompareQueryPositionCOP : protocols::frag_picker
• CompareQueryPositionOP : protocols::frag_picker
• CompareScoreComponentCOP : protocols::frag_picker
• CompareScoreComponentOP : protocols::frag_picker
• CompareTotalScoreCOP : protocols::frag_picker
• CompareTotalScoreOP : protocols::frag_picker
• CompositeScoringSchemeOP : core::sequence
• CompositeSegment : protocols::rbsegment_relax
• CompositeSequenceCOP : core::sequence
• CompositeSequenceOP : core::sequence
• CompositionMoverCOP : protocols::moves
• CompositionMoverOP : protocols::moves
• CompoundFilterCOP : protocols::filters
• CompoundFilterOP : protocols::filters
• ConcurrencyTestCOP : protocols::features::helixAssembly
• ConcurrencyTestOP : protocols::features::helixAssembly
• ConformationCOP : core::conformation
• ConformationKinWriterCOP : core::conformation
• ConformationKinWriterOP : core::conformation
• ConformationOP : core::conformation
• ConformationViewerOP : protocols::viewer
• ConformerSwitchMoverCOP : protocols::docking
• ConformerSwitchMoverOP : protocols::docking
• ConnectRightAP : protocols::forge::build
• ConnectRightCAP : protocols::forge::build
• ConnectRightCOP : protocols::forge::build
• ConnectRightOP : protocols::forge::build
• ConsensusDesignMoverOP : protocols::simple_moves
• ConservedPosMutationFilterCOP : protocols::simple_filters
• ConservedPosMutationFilterOP : protocols::simple_filters
• ConstAbinitioMoverWeightAP : protocols::topology_broker::weights
• ConstAbinitioMoverWeightCAP : protocols::topology_broker::weights
• ConstAbinitioMoverWeightCOP : protocols::topology_broker::weights
• ConstAbinitioMoverWeightOP : protocols::topology_broker::weights
• ConstantFuncOP : core::scoring::constraints
• ConstantLengthFragSetCOP : core::fragment
• ConstantLengthFragSetOP : core::fragment
• ConstraintClaimerAP : protocols::topology_broker
• ConstraintClaimerCAP : protocols::topology_broker
• ConstraintClaimerCOP : protocols::topology_broker
• ConstraintClaimerOP : protocols::topology_broker
• ConstraintCOP : core::scoring::constraints
• ConstraintCOPs : core::scoring::constraints
• ConstraintCreatorCOP : core::scoring::constraints
• ConstraintCreatorOP : core::scoring::constraints
• ConstraintedOptimizationWeightFuncOP : protocols::optimize_weights
• ConstraintEvaluatorCOP : protocols::constraints_additional
• ConstraintEvaluatorOP : protocols::constraints_additional
• ConstraintEvaluatorWrapperAP : protocols::topology_broker
• ConstraintEvaluatorWrapperCAP : protocols::topology_broker
• ConstraintEvaluatorWrapperCOP : protocols::topology_broker
• ConstraintEvaluatorWrapperOP : protocols::topology_broker
• ConstraintFileRCGCAP : protocols::forge::constraints
• ConstraintFileRCGOP : protocols::forge::constraints
• ConstraintFragmentSamplerOP : protocols::abinitio
• ConstraintGraphCOP : core::scoring::constraints
• ConstraintGraphOP : core::scoring::constraints
• ConstrainToIdealMoverCOP : protocols::simple_moves
• ConstrainToIdealMoverOP : protocols::simple_moves
• ConstraintOP : core::scoring::constraints
• ConstraintOPs : core::scoring::constraints , protocols::flxbb
• ConstraintsCOP : core::scoring::constraints
• ConstraintScoreCutoffFilterCOP : protocols::simple_filters
• ConstraintScoreCutoffFilterOP : protocols::simple_filters
• ConstraintsEnergyCOP : core::scoring::constraints
• ConstraintsEnergyOP : core::scoring::constraints
• ConstraintSetCOP : core::scoring::constraints
• ConstraintSetMoverCOP : protocols::simple_moves
• ConstraintSetMoverOP : protocols::simple_moves
• ConstraintSetOP : core::scoring::constraints
• ConstraintsOP : core::scoring::constraints
• ContactCOP : protocols::frag_picker
• ContactCountsCOP : protocols::frag_picker
• ContactCountsOP : protocols::frag_picker
• ContactMapCOP : protocols::contact_map
• ContactMapOP : protocols::contact_map
• ContactOP : protocols::frag_picker
• ContactPartnerAP : protocols::contact_map
• ContextDependentLRTwoBodyEnergyCOP : core::scoring::methods
• ContextDependentLRTwoBodyEnergyOP : core::scoring::methods
• ContextDependentOneBodyEnergyOP : core::scoring::methods
• ContextDependentTwoBodyEnergyCOP : core::scoring::methods
• ContextDependentTwoBodyEnergyOP : core::scoring::methods
• ContextGraphCOP : core::scoring
• ContextGraphOP : core::scoring
• ContextIndependentLRTwoBodyEnergyCOP : core::scoring::methods
• ContextIndependentLRTwoBodyEnergyOP : core::scoring::methods
• ContextIndependentOneBodyEnergyCOP : core::scoring::methods
• ContextIndependentOneBodyEnergyOP : core::scoring::methods
• ContextIndependentTwoBodyEnergyCOP : core::scoring::methods
• ContextIndependentTwoBodyEnergyOP : core::scoring::methods
• ContingentFilterCOP : protocols::filters
• ContingentFilterOP : protocols::filters
• ContinuousRotamerSetCOP : core::pack::rotamer_set
• ContinuousRotamerSetOP : core::pack::rotamer_set
• ContinuousRotamerSetsCOP : core::pack::rotamer_set
• ContinuousRotamerSetsOP : core::pack::rotamer_set
• ConvergenceCheckCOP : protocols::moves::mc_convergence_checks
• ConvergenceCheckOP : protocols::moves::mc_convergence_checks
• CoreDunbrackFilterCOP : protocols::fldsgn::filters
• CoreDunbrackFilterOP : protocols::fldsgn::filters
• CountFromLeftAP : protocols::forge::build
• CountFromLeftCAP : protocols::forge::build
• CountFromLeftCOP : protocols::forge::build
• CountFromLeftOP : protocols::forge::build
• CountPairFunctionCOP : core::scoring::etable::count_pair
• CountPairFunctionOP : core::scoring::etable::count_pair
• CountPairGenericOP : core::scoring::etable::count_pair
• CovalentConnectionReplaceInfoCOP : protocols::toolbox::match_enzdes_util
• CovalentConnectionReplaceInfoOP : protocols::toolbox::match_enzdes_util
• CrossPeakAP : protocols::noesy_assign
• CrossPeakCAP : protocols::noesy_assign
• CrossPeakCOP : protocols::noesy_assign
• CrossPeakInfoAP : protocols::noesy_assign
• CrossPeakInfoCAP : protocols::noesy_assign
• CrossPeakInfoCOP : protocols::noesy_assign
• CrossPeakInfoOP : protocols::noesy_assign
• CrossPeakListAP : protocols::noesy_assign
• CrossPeakListCAP : protocols::noesy_assign
• CrossPeakListCOP : protocols::noesy_assign
• CrossPeakListOP : protocols::noesy_assign
• CrossPeakOP : protocols::noesy_assign
• CSD_TorsionEnergyCOP : core::scoring::methods
• CSD_TorsionEnergyOP : core::scoring::methods
• CSDAtomTypeSetAP : core::chemical
• CSDAtomTypeSetCAP : core::chemical
• CSDAtomTypeSetCOP : core::chemical
• CSDAtomTypeSetOP : core::chemical
• CSScoreCOP : protocols::frag_picker::scores
• CSScoreOP : protocols::frag_picker::scores
• CstEnergyContainerCOP : core::scoring::constraints
• CstEnergyContainerOP : core::scoring::constraints
• CstMinimizationDataCOP : core::scoring::constraints
• CstMinimizationDataOP : core::scoring::constraints
• CubeKey : core::conformation
• CustomScoreSelectorCOP : protocols::frag_picker
• CustomScoreSelectorOP : protocols::frag_picker
• CutBiasClaimerAP : protocols::topology_broker
• CutBiasClaimerCAP : protocols::topology_broker
• CutBiasClaimerCOP : protocols::topology_broker
• CutBiasClaimerOP : protocols::topology_broker
• CutChainMoverCOP : protocols::simple_moves
• CutChainMoverOP : protocols::simple_moves
• CycleMoverCOP : protocols::moves
• CycleMoverOP : protocols::moves
• CyclicMoverCOP : protocols::moves
• CyclicMoverOP : protocols::moves