core::pose::MiniPose Class Reference

#include <MiniPose.hh>

Inheritance diagram for core::pose::MiniPose:

Collaboration diagram for core::pose::MiniPose:

Public Member Functions
	MiniPose (core::pose::Pose const &pose)
	MiniPose (utility::vector1< utility::vector1< PointPosition > > const &coords, core::kinematics::FoldTree const &fold_tree, std::string const &sequence)
virtual	~MiniPose ()
core::kinematics::FoldTree const &	fold_tree () const
utility::vector1 < utility::vector1 < PointPosition > > const &	coords () const
utility::vector1 < utility::vector1 < std::string > > const &	atom_names_list () const
utility::vector1 < utility::vector1 < core::chemical::VariantType > > const &	variant_types_list () const
Size	size () const
Size	total_residue () const
std::string const &	sequence () const
PointPosition const &	xyz (core::id::AtomID atom_id) const
std::string const &	atom_name (core::id::AtomID atom_id) const
utility::vector1 < core::chemical::VariantType > const &	variant_types (Size const seq_num) const

Private Attributes
utility::vector1 < utility::vector1 < PointPosition > >	coords_
core::kinematics::FoldTree	fold_tree_
std::string	sequence_
utility::vector1 < utility::vector1 < std::string > >	atom_names_list_
utility::vector1 < utility::vector1 < core::chemical::VariantType > >	variant_types_list_

Detailed Description

A very simple bag to hold xyz and fold_tree and sequence only. Kind of like a silent struct, but not quite (silent_structs don't necessarily have xyz). Kind of like a Conformation but without the overtree of an atom_tree.

Definition at line 43 of file MiniPose.hh.

Constructor & Destructor Documentation

core::pose::MiniPose::MiniPose

(

core::pose::Pose const &

pose)

Definition at line 37 of file MiniPose.cc.

References atom_name(), core::chemical::ResidueType::atom_name(), atom_names_list_, coords_, core::pose::Pose::fold_tree(), fold_tree_, core::conformation::Residue::natoms(), core::pose::Pose::residue(), core::pose::Pose::residue_type(), core::pose::Pose::sequence(), sequence_, core::pose::Pose::total_residue(), core::chemical::ResidueType::variant_types(), variant_types_list_, xyz(), and core::conformation::Residue::xyz().

core::pose::MiniPose::MiniPose	(	utility::vector1< utility::vector1< PointPosition > > const &	coords,
		core::kinematics::FoldTree const &	fold_tree,
		std::string const &	sequence
	)

Definition at line 59 of file MiniPose.cc.

core::pose::MiniPose::~MiniPose ( )

virtual

Definition at line 34 of file MiniPose.cc.

Member Function Documentation

std::string const & core::pose::MiniPose::atom_name

(

core::id::AtomID

atom_id)

const

Definition at line 126 of file MiniPose.cc.

References atom_names_list_, core::id::AtomID::atomno(), and core::id::AtomID::rsd().

Referenced by MiniPose().

utility::vector1< utility::vector1< std::string > > const & core::pose::MiniPose::atom_names_list

(

)

const

Definition at line 81 of file MiniPose.cc.

References atom_names_list_.

Referenced by core::pose::setup_atom_id_map_match_atom_names().

utility::vector1< utility::vector1< PointPosition > > const & core::pose::MiniPose::coords

(

)

const

Definition at line 74 of file MiniPose.cc.

References coords_.

core::kinematics::FoldTree const & core::pose::MiniPose::fold_tree

(

)

const

Definition at line 69 of file MiniPose.cc.

References fold_tree_.

std::string const & core::pose::MiniPose::sequence

(

)

const

Definition at line 103 of file MiniPose.cc.

References sequence_.

Size core::pose::MiniPose::size

(

)

const

Definition at line 93 of file MiniPose.cc.

References coords_.

Size core::pose::MiniPose::total_residue

(

)

const

Definition at line 98 of file MiniPose.cc.

References coords_.

utility::vector1< core::chemical::VariantType > const & core::pose::MiniPose::variant_types

(

Size const

seq_num)

const

Definition at line 143 of file MiniPose.cc.

References variant_types_list_.

utility::vector1< utility::vector1< core::chemical::VariantType > > const & core::pose::MiniPose::variant_types_list

(

)

const

Definition at line 87 of file MiniPose.cc.

References variant_types_list_.

PointPosition const & core::pose::MiniPose::xyz

(

core::id::AtomID

atom_id)

const

Definition at line 108 of file MiniPose.cc.

References core::id::AtomID::atomno(), coords_, and core::id::AtomID::rsd().

Referenced by core::pose::copy_dofs(), MiniPose(), and core::scoring::superimpose_pose().

Member Data Documentation

utility::vector1< utility::vector1< std::string > > core::pose::MiniPose::atom_names_list_

private

Definition at line 80 of file MiniPose.hh.

Referenced by atom_name(), atom_names_list(), and MiniPose().

utility::vector1< utility::vector1< PointPosition > > core::pose::MiniPose::coords_

private

Definition at line 77 of file MiniPose.hh.

Referenced by coords(), MiniPose(), size(), total_residue(), and xyz().

core::kinematics::FoldTree core::pose::MiniPose::fold_tree_

private

Definition at line 78 of file MiniPose.hh.

Referenced by fold_tree(), and MiniPose().

std::string core::pose::MiniPose::sequence_

private

Definition at line 79 of file MiniPose.hh.

Referenced by MiniPose(), and sequence().

utility::vector1< utility::vector1< core::chemical::VariantType > > core::pose::MiniPose::variant_types_list_

private

Definition at line 81 of file MiniPose.hh.

Referenced by MiniPose(), variant_types(), and variant_types_list().

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The documentation for this class was generated from the following files:

• src/core/pose/MiniPose.hh
• src/core/pose/MiniPose.cc