util.hh

Go to the documentation of this file.

// -*- mode:c++;tab-width:2;indent-tabs-mode:t;show-trailing-whitespace:t;rm-trailing-spaces:t -*-
// vi: set ts=2 noet:
//
// (c) Copyright Rosetta Commons Member Institutions.
// (c) This file is part of the Rosetta software suite and is made available under license.
// (c) The Rosetta software is developed by the contributing members of the Rosetta Commons.
// (c) For more information, see http://www.rosettacommons.org. Questions about this can be
// (c) addressed to University of Washington UW TechTransfer, email: license@u.washington.edu.

/// @file JumpSetup
/// @brief read jump-definition file   setups fold tree an chainbreak variants
/// loop code didn't work because fold-tree to complicated ( overlapping loops )
/// @detailed
/// @author Oliver Lange


#ifndef INCLUDED_core_scoring_dssp_util_hh
#define INCLUDED_core_scoring_dssp_util_hh

// Project Headers
#include <core/pose/Pose.fwd.hh>
// AUTO-REMOVED #include <core/kinematics/FoldTree.hh>
#include <core/types.hh>
// AUTO-REMOVED #include <core/fragment/JumpingFrame.fwd.hh>

#include <utility/vector1.hh>


namespace core {
namespace scoring {
namespace dssp {

   typedef utility::vector1< PointPosition > PointList;

void
get_CA_vectors(
         PointList const & ca1, // pass by reference, so no tricks:: 3x3
         PointList const & ca2, // pass by reference, so no tricks:: 3x3
         Vector & a,
         Vector & b,
         Vector & c
);

void
get_pairing_geometry(
         pose::Pose const& pose,
         Size const res1,
         Size const res2,
         Real& orientation,
         Real& pleating1,
         Real& pleating2
);

void
get_pleating(
         pose::Pose const& pose,
         Size const pos1,
         Size const pos2,
         Size &orientation,
         Size &pleating
);


} // dssp
} // scoring
} // core

#endif