protocols::simple_filters::AbinitioBaseFilter Class Reference

#include <AbinitioBaseFilter.hh>

Inheritance diagram for protocols::simple_filters::AbinitioBaseFilter:

Collaboration diagram for protocols::simple_filters::AbinitioBaseFilter:

Public Member Functions
	AbinitioBaseFilter ()
	c-tor and d-tor More...
virtual	~AbinitioBaseFilter ()
virtual filters::FilterOP	clone () const =0
virtual filters::FilterOP	fresh_instance () const =0
virtual bool	apply (core::pose::Pose const &pose) const =0
	Returns true if the given pose passes the filter, false otherwise. More...
std::string	get_protein_sstype (core::pose::Pose const &pose) const
virtual std::string	name () const
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
virtual	~Filter ()
virtual void	report (std::ostream &, core::pose::Pose const &) const
virtual core::Real	report_sm (core::pose::Pose const &) const
	used to report filter internals through a score or silent file More...
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void	parse_my_tag (utility::tag::TagPtr const, moves::DataMap &, Filters_map const &, moves::Movers_map const &, core::pose::Pose const &)
virtual void	apply (core::io::serialization::PipeMap &pmap)
virtual void	score (core::io::serialization::PipeMap &pmap)
virtual core::Real	score (core::pose::Pose &pose)
virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

Protected Attributes
int	max_helix_length_
core::Real	max_helix_fraction_
int	beta_
float	beta_ratio_
std::string	sstype_
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

Definition at line 41 of file AbinitioBaseFilter.hh.

Constructor & Destructor Documentation

protocols::simple_filters::AbinitioBaseFilter::AbinitioBaseFilter

(

)

c-tor and d-tor

Definition at line 61 of file AbinitioBaseFilter.cc.

virtual protocols::simple_filters::AbinitioBaseFilter::~AbinitioBaseFilter ( )

inlinevirtual

Definition at line 46 of file AbinitioBaseFilter.hh.

Member Function Documentation

bool protocols::simple_filters::AbinitioBaseFilter::apply ( core::pose::Pose const &  pose) const

pure virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

Implemented in protocols::simple_filters::SheetFilter, protocols::simple_filters::COFilter, and protocols::simple_filters::RGFilter.

Definition at line 68 of file AbinitioBaseFilter.cc.

References tr().

Referenced by protocols::simple_filters::COFilter::apply(), and protocols::simple_filters::RGFilter::apply().

virtual filters::FilterOP protocols::simple_filters::AbinitioBaseFilter::clone ( ) const

pure virtual

Implements protocols::filters::Filter.

Implemented in protocols::simple_filters::SheetFilter, protocols::simple_filters::COFilter, and protocols::simple_filters::RGFilter.

virtual filters::FilterOP protocols::simple_filters::AbinitioBaseFilter::fresh_instance ( ) const

pure virtual

Implements protocols::filters::Filter.

Implemented in protocols::simple_filters::SheetFilter, protocols::simple_filters::COFilter, and protocols::simple_filters::RGFilter.

std::string protocols::simple_filters::AbinitioBaseFilter::get_protein_sstype

(

core::pose::Pose const &

pose)

const

Definition at line 75 of file AbinitioBaseFilter.cc.

References core::conformation::Residue::is_protein(), core::pose::read_psipred_ss2_file(), core::pose::Pose::residue(), core::pose::Pose::total_residue(), and tr().

virtual std::string protocols::simple_filters::AbinitioBaseFilter::name ( ) const

inlinevirtual

Reimplemented from protocols::filters::Filter.

Reimplemented in protocols::simple_filters::SheetFilter, protocols::simple_filters::COFilter, and protocols::simple_filters::RGFilter.

Definition at line 59 of file AbinitioBaseFilter.hh.

Member Data Documentation

int protocols::simple_filters::AbinitioBaseFilter::beta_

mutableprotected

Definition at line 64 of file AbinitioBaseFilter.hh.

float protocols::simple_filters::AbinitioBaseFilter::beta_ratio_

mutableprotected

Definition at line 65 of file AbinitioBaseFilter.hh.

core::Real protocols::simple_filters::AbinitioBaseFilter::max_helix_fraction_

mutableprotected

Definition at line 63 of file AbinitioBaseFilter.hh.

Referenced by protocols::simple_filters::RGFilter::apply().

int protocols::simple_filters::AbinitioBaseFilter::max_helix_length_

mutableprotected

Definition at line 59 of file AbinitioBaseFilter.hh.

Referenced by protocols::simple_filters::RGFilter::apply().

std::string protocols::simple_filters::AbinitioBaseFilter::sstype_

mutableprotected

Definition at line 66 of file AbinitioBaseFilter.hh.

Referenced by protocols::simple_filters::COFilter::apply(), and protocols::simple_filters::RGFilter::apply().

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The documentation for this class was generated from the following files:

• src/protocols/simple_filters/AbinitioBaseFilter.hh
• src/protocols/simple_filters/AbinitioBaseFilter.cc