protocols::features::ScoreTypeFeatures Class Reference

#include <ScoreTypeFeatures.hh>

Inheritance diagram for protocols::features::ScoreTypeFeatures:

Collaboration diagram for protocols::features::ScoreTypeFeatures:

Public Member Functions
	ScoreTypeFeatures ()
	ScoreTypeFeatures (core::scoring::ScoreFunctionOP scfxn)
	ScoreTypeFeatures (ScoreTypeFeatures const &src)
virtual	~ScoreTypeFeatures ()
std::string	type_name () const
	return string with class name More...
virtual void	write_schema_to_db (utility::sql_database::sessionOP db_session) const
	generate the table schemas and write them to the database More...
utility::vector1< std::string >	features_reporter_dependencies () const
	return the set of features reporters that are required to also already be extracted by the time this one is used. More...
core::Size	report_features (core::pose::Pose const &, utility::vector1< bool > const &, boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session)
	collect all the feature data for the pose. More...
core::Size	report_features (core::Size const batch_id, utility::sql_database::sessionOP db_session)
void	delete_record (boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session)
Public Member Functions inherited from protocols::features::FeaturesReporter
virtual	~FeaturesReporter ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...
virtual std::string	schema () const
	return sql statements that sets up the appropriate tables to contain the features. This should be removed once everything has been moved to the schema generator More...
core::Size	report_features (core::pose::Pose const &, boost::uuids::uuid, utility::sql_database::sessionOP)
	collect all the feature data for the pose. More...
virtual void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
virtual void	load_into_pose (utility::sql_database::sessionOP, boost::uuids::uuid, core::pose::Pose &)

Private Member Functions
void	insert_score_type_rows (core::Size protocol_id, utility::sql_database::sessionOP db_session)

Private Attributes
core::scoring::ScoreFunctionOP	scfxn_

Additional Inherited Members
Protected Member Functions inherited from protocols::features::FeaturesReporter
std::string	find_tag (core::pose::Pose const &pose) const
void	delete_records_from_table (std::string const &table_name, boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session)
	a helper function for deleting data associated with a given structure from feature database WARNING table_name must be sanitized! More...

Detailed Description

Definition at line 38 of file ScoreTypeFeatures.hh.

Constructor & Destructor Documentation

protocols::features::ScoreTypeFeatures::ScoreTypeFeatures

(

)

Definition at line 82 of file ScoreTypeFeatures.cc.

protocols::features::ScoreTypeFeatures::ScoreTypeFeatures

(

core::scoring::ScoreFunctionOP

scfxn)

protocols::features::ScoreTypeFeatures::ScoreTypeFeatures

(

ScoreTypeFeatures const &

src)

Definition at line 96 of file ScoreTypeFeatures.cc.

protocols::features::ScoreTypeFeatures::~ScoreTypeFeatures ( )

virtual

Definition at line 103 of file ScoreTypeFeatures.cc.

Member Function Documentation

void protocols::features::ScoreTypeFeatures::delete_record ( boost::uuids::uuid  struct_id, utility::sql_database::sessionOP  db_session  )

virtual

Reimplemented from protocols::features::FeaturesReporter.

Definition at line 167 of file ScoreTypeFeatures.cc.

utility::vector1< std::string > protocols::features::ScoreTypeFeatures::features_reporter_dependencies ( ) const

virtual

return the set of features reporters that are required to also already be extracted by the time this one is used.

Reimplemented from protocols::features::FeaturesReporter.

Definition at line 135 of file ScoreTypeFeatures.cc.

void protocols::features::ScoreTypeFeatures::insert_score_type_rows ( core::Size  protocol_id, utility::sql_database::sessionOP  db_session  )

private

Definition at line 172 of file ScoreTypeFeatures.cc.

References core::scoring::n_score_types, and core::scoring::ScoreTypeManager::name_from_score_type().

core::Size protocols::features::ScoreTypeFeatures::report_features ( core::pose::Pose const &  , utility::vector1< bool > const &  , boost::uuids::uuid  , utility::sql_database::sessionOP    )

virtual

collect all the feature data for the pose.

Implements protocols::features::FeaturesReporter.

core::Size protocols::features::ScoreTypeFeatures::report_features	(	core::Size const	batch_id,
		utility::sql_database::sessionOP	db_session
	)

string protocols::features::ScoreTypeFeatures::type_name ( ) const

virtual

return string with class name

Reimplemented from protocols::features::FeaturesReporter.

Definition at line 106 of file ScoreTypeFeatures.cc.

void protocols::features::ScoreTypeFeatures::write_schema_to_db ( utility::sql_database::sessionOP  db_session) const

virtual

generate the table schemas and write them to the database

Implements protocols::features::FeaturesReporter.

Definition at line 109 of file ScoreTypeFeatures.cc.

Member Data Documentation

core::scoring::ScoreFunctionOP protocols::features::ScoreTypeFeatures::scfxn_

private

Definition at line 87 of file ScoreTypeFeatures.hh.

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The documentation for this class was generated from the following files:

• src/protocols/features/ScoreTypeFeatures.hh
• src/protocols/features/ScoreTypeFeatures.cc