protocols::match::output::SameSequenceGrouper Class Reference

Class to group matches that represent the same amino acids at the same launch points. E.g. Two matches that both put a cys at launch point #33, a ser a launch point #42 and another ser at launch point #80 would be grouped together – even if they are different rotamers. More...

#include <SameSequenceGrouper.hh>

Inheritance diagram for protocols::match::output::SameSequenceGrouper:

Collaboration diagram for protocols::match::output::SameSequenceGrouper:

Public Types
typedef core::Real	Real
typedef core::Size	Size
typedef std::map < utility::OrderedTuple < utility::vector1< Size > >, Size >	SequenceMap
Public Types inherited from protocols::match::output::MatchGrouper
typedef core::Real	Real

Public Member Functions
	SameSequenceGrouper ()
	SameSequenceGrouper (Size ncst)
virtual	~SameSequenceGrouper ()
virtual Size	assign_group_for_match (match const &m)
virtual Size	assign_group_for_match (match_dspos1 const &m)
virtual void	reset ()
virtual void	set_n_geometric_constraints (Size n_csts)
void	set_hit_cacher (UpstreamHitCacherOP cacher)
Public Member Functions inherited from protocols::match::output::MatchGrouper
	MatchGrouper ()
virtual	~MatchGrouper ()

Private Attributes
Size	n_geometric_constraints_
UpstreamHitCacherOP	hit_cacher_
SequenceMap	sequence_indexer_

Detailed Description

Class to group matches that represent the same amino acids at the same launch points. E.g. Two matches that both put a cys at launch point #33, a ser a launch point #42 and another ser at launch point #80 would be grouped together – even if they are different rotamers.

Definition at line 49 of file SameSequenceGrouper.hh.

Member Typedef Documentation

typedef core::Real protocols::match::output::SameSequenceGrouper::Real

Definition at line 51 of file SameSequenceGrouper.hh.

typedef std::map< utility::OrderedTuple< utility::vector1< Size > >, Size > protocols::match::output::SameSequenceGrouper::SequenceMap

Definition at line 53 of file SameSequenceGrouper.hh.

typedef core::Size protocols::match::output::SameSequenceGrouper::Size

Definition at line 52 of file SameSequenceGrouper.hh.

Constructor & Destructor Documentation

protocols::match::output::SameSequenceGrouper::SameSequenceGrouper

(

)

Definition at line 39 of file SameSequenceGrouper.cc.

protocols::match::output::SameSequenceGrouper::SameSequenceGrouper

(

Size

ncst)

Definition at line 40 of file SameSequenceGrouper.cc.

protocols::match::output::SameSequenceGrouper::~SameSequenceGrouper ( )

virtual

Definition at line 42 of file SameSequenceGrouper.cc.

Member Function Documentation

SameSequenceGrouper::Size protocols::match::output::SameSequenceGrouper::assign_group_for_match ( match const &  m)

virtual

Implements protocols::match::output::MatchGrouper.

Definition at line 45 of file SameSequenceGrouper.cc.

Referenced by protocols::match::output::SameSequenceAndDSPositionGrouper::assign_group_for_match().

SameSequenceGrouper::Size protocols::match::output::SameSequenceGrouper::assign_group_for_match ( match_dspos1 const &  m)

virtual

Implements protocols::match::output::MatchGrouper.

Reimplemented in protocols::match::output::SameSequenceAndDSPositionGrouper.

Definition at line 53 of file SameSequenceGrouper.cc.

References protocols::match::fake_hit(), hit_cacher_, n_geometric_constraints_, sequence_indexer_, and protocols::match::match_dspos1::upstream_hits.

void protocols::match::output::SameSequenceGrouper::reset ( void  )

virtual

Implements protocols::match::output::MatchGrouper.

Reimplemented in protocols::match::output::SameSequenceAndDSPositionGrouper.

Definition at line 77 of file SameSequenceGrouper.cc.

References sequence_indexer_.

Referenced by protocols::match::output::SameSequenceAndDSPositionGrouper::reset().

void protocols::match::output::SameSequenceGrouper::set_hit_cacher

(

UpstreamHitCacherOP

cacher)

Definition at line 89 of file SameSequenceGrouper.cc.

References hit_cacher_.

void protocols::match::output::SameSequenceGrouper::set_n_geometric_constraints ( Size  n_csts)

virtual

Reimplemented in protocols::match::output::SameSequenceAndDSPositionGrouper.

Definition at line 83 of file SameSequenceGrouper.cc.

References n_geometric_constraints_.

Referenced by protocols::match::output::SameSequenceAndDSPositionGrouper::set_n_geometric_constraints().

Member Data Documentation

UpstreamHitCacherOP protocols::match::output::SameSequenceGrouper::hit_cacher_

private

Definition at line 88 of file SameSequenceGrouper.hh.

Referenced by assign_group_for_match(), and set_hit_cacher().

Size protocols::match::output::SameSequenceGrouper::n_geometric_constraints_

private

Definition at line 87 of file SameSequenceGrouper.hh.

Referenced by assign_group_for_match(), and set_n_geometric_constraints().

SequenceMap protocols::match::output::SameSequenceGrouper::sequence_indexer_

private

Definition at line 89 of file SameSequenceGrouper.hh.

Referenced by assign_group_for_match(), and reset().

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The documentation for this class was generated from the following files:

• src/protocols/match/output/SameSequenceGrouper.hh
• src/protocols/match/output/SameSequenceGrouper.cc