core::coarse::Rule Class Reference

#include <Rules.hh>

Inheritance diagram for core::coarse::Rule:

Collaboration diagram for core::coarse::Rule:

Classes
class	BeadAdder

Public Types
typedef std::string	AtomToken
typedef std::vector< std::string >	Tokens
typedef std::string	BeadName
typedef std::map< BeadName, Tokens >	BeadRules
typedef BeadRules::const_iterator	ConstBeadIterator
typedef Tokens::const_iterator	ConstTokenIterator

Public Member Functions
	Rule ()
	Rule (chemical::AA _AA)
void	pretty_print (std::ostream &os)
BeadAdder	add_to_bead (BeadName bead)
ConstBeadIterator	begin () const
ConstBeadIterator	end () const

Static Public Attributes
static const BeadName	FULL_ATOM = "FULL_ATOM"
static const AtomToken	REST_SIDECHAIN = "REST_SC"
static const AtomToken	REST_ALL = "REST"

Private Attributes
chemical::AA	my_AA_
BeadRules	rules_

Detailed Description

Definition at line 53 of file Rules.hh.

Member Typedef Documentation

typedef std::string core::coarse::Rule::AtomToken

Definition at line 55 of file Rules.hh.

typedef std::string core::coarse::Rule::BeadName

Definition at line 57 of file Rules.hh.

typedef std::map<BeadName, Tokens> core::coarse::Rule::BeadRules

Definition at line 58 of file Rules.hh.

typedef BeadRules::const_iterator core::coarse::Rule::ConstBeadIterator

Definition at line 59 of file Rules.hh.

typedef Tokens::const_iterator core::coarse::Rule::ConstTokenIterator

Definition at line 60 of file Rules.hh.

typedef std::vector<std::string> core::coarse::Rule::Tokens

Definition at line 56 of file Rules.hh.

Constructor & Destructor Documentation

core::coarse::Rule::Rule ( )

inline

Definition at line 71 of file Rules.hh.

core::coarse::Rule::Rule ( chemical::AA  _AA)

inline

Definition at line 72 of file Rules.hh.

Member Function Documentation

BeadAdder core::coarse::Rule::add_to_bead ( BeadName  bead)

inline

Definition at line 78 of file Rules.hh.

References rules_.

Referenced by core::coarse::GenericRule::GenericRule().

ConstBeadIterator core::coarse::Rule::begin ( ) const

inline

Definition at line 79 of file Rules.hh.

References rules_.

ConstBeadIterator core::coarse::Rule::end ( ) const

inline

Definition at line 80 of file Rules.hh.

References rules_.

void Rule::pretty_print

(

std::ostream &

os)

Definition at line 41 of file Rules.cc.

References core::sequence::end.

Member Data Documentation

const std::string Rule::FULL_ATOM = "FULL_ATOM"

static

Definition at line 74 of file Rules.hh.

Referenced by core::coarse::RuleSet::create_rules(), core::coarse::GenericRule::GenericRule(), and core::coarse::Translator::Translator().

chemical::AA core::coarse::Rule::my_AA_

private

Definition at line 82 of file Rules.hh.

const std::string Rule::REST_ALL = "REST"

static

Definition at line 76 of file Rules.hh.

Referenced by core::coarse::RuleSet::create_rules(), core::coarse::GenericRule::GenericRule(), and core::coarse::Translator::Translator().

const std::string Rule::REST_SIDECHAIN = "REST_SC"

static

Definition at line 75 of file Rules.hh.

Referenced by core::coarse::RuleSet::create_rules(), and core::coarse::Translator::Translator().

BeadRules core::coarse::Rule::rules_

private

Definition at line 83 of file Rules.hh.

Referenced by add_to_bead(), begin(), and end().

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The documentation for this class was generated from the following files:

• src/core/coarse/Rules.hh
• src/core/coarse/Rules.cc