#include <OperateOnCertainResidues.hh>

Inheritance diagram for core::pack::task::operation::OperateOnCertainResidues:

Collaboration diagram for core::pack::task::operation::OperateOnCertainResidues:

Public Types
typedef TaskOperation	parent

typedef utility::tag::TagPtr	TagPtr

typedef pose::Pose	Pose

typedef utility::vector1< Size >	ResidueIndices

Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagPtr	TagPtr

typedef pose::Pose	Pose

Public Member Functions
	OperateOnCertainResidues ()

	OperateOnCertainResidues (ResLvlTaskOperationOP, ResFilterOP)

	OperateOnCertainResidues (OperateOnCertainResidues const &)

OperateOnCertainResidues &	operator= (OperateOnCertainResidues const &)

virtual	~OperateOnCertainResidues ()

virtual TaskOperationOP	clone () const
	Create another task operation of the type matching the most-derived version of the class. More...

virtual void	apply (Pose const &, PackerTask &) const
	Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...

void	residue_indices (ResidueIndices const &)
	supports direct limitation of residues to be affected, without the need for a filter More...

ResidueIndices &	residue_indices ()

ResidueIndices const &	residue_indices () const

void	op (ResLvlTaskOperationCOP)
	sets the ResLvlTaskOperation that will be applied to residues More...

void	filter (ResFilterCOP)
	sets an optional filter that is applied to each individual residue More...

virtual void	parse_tag (TagPtr)
	Used to parse an xml-like tag to construct the ResLvlTaskOperation and the ResFilter. More...

Public Member Functions inherited from core::pack::task::operation::TaskOperation
virtual	~TaskOperation ()

virtual void	parse_def (utility::lua::LuaObject const &def)

Private Attributes
ResidueIndices	residue_indices_

ResLvlTaskOperationOP	op_

ResFilterOP	filter_

Detailed Description

Definition at line 47 of file OperateOnCertainResidues.hh.

Member Typedef Documentation

typedef TaskOperation core::pack::task::operation::OperateOnCertainResidues::parent

Definition at line 50 of file OperateOnCertainResidues.hh.

typedef pose::Pose core::pack::task::operation::OperateOnCertainResidues::Pose

Definition at line 52 of file OperateOnCertainResidues.hh.

typedef utility::vector1< Size > core::pack::task::operation::OperateOnCertainResidues::ResidueIndices

Definition at line 53 of file OperateOnCertainResidues.hh.

typedef utility::tag::TagPtr core::pack::task::operation::OperateOnCertainResidues::TagPtr

Definition at line 51 of file OperateOnCertainResidues.hh.

Constructor & Destructor Documentation

core::pack::task::operation::OperateOnCertainResidues::OperateOnCertainResidues ( )

Definition at line 44 of file OperateOnCertainResidues.cc.

Referenced by clone().

core::pack::task::operation::OperateOnCertainResidues::OperateOnCertainResidues	(	ResLvlTaskOperationOP	rlto,
		ResFilterOP	filter
	)

Definition at line 50 of file OperateOnCertainResidues.cc.

core::pack::task::operation::OperateOnCertainResidues::OperateOnCertainResidues ( OperateOnCertainResidues const & src)

Definition at line 59 of file OperateOnCertainResidues.cc.

core::pack::task::operation::OperateOnCertainResidues::~OperateOnCertainResidues ( )

virtual

Definition at line 76 of file OperateOnCertainResidues.cc.

Member Function Documentation

void core::pack::task::operation::OperateOnCertainResidues::apply	(	Pose const &	,
		PackerTask &
	)		const

virtual

Change a packer task in some way. The input pose is the one to which the input task will be later applied.

Implements core::pack::task::operation::TaskOperation.

Definition at line 89 of file OperateOnCertainResidues.cc.

References core::sequence::end, filter_, core::pack::task::PackerTask::nonconst_residue_task(), op_, residue_indices_, core::pack::task::PackerTask::total_residue(), and core::pose::Pose::total_residue().

Referenced by protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::apply(), and protocols::toolbox::task_operations::ProteinInterfaceDesignOperation::apply().

TaskOperationOP core::pack::task::operation::OperateOnCertainResidues::clone ( ) const

virtual

Create another task operation of the type matching the most-derived version of the class.

Implements core::pack::task::operation::TaskOperation.

Definition at line 83 of file OperateOnCertainResidues.cc.

References OperateOnCertainResidues().

void core::pack::task::operation::OperateOnCertainResidues::filter ( ResFilterCOP filter_in)

sets an optional filter that is applied to each individual residue

Definition at line 121 of file OperateOnCertainResidues.cc.

References filter_.

void core::pack::task::operation::OperateOnCertainResidues::op ( ResLvlTaskOperationCOP op_in)

sets the ResLvlTaskOperation that will be applied to residues

Definition at line 115 of file OperateOnCertainResidues.cc.

References op_.

Referenced by protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::apply(), protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::apply(), protocols::toolbox::task_operations::DesignAroundOperation::apply(), and protocols::toolbox::task_operations::ProteinInterfaceDesignOperation::apply().

OperateOnCertainResidues & core::pack::task::operation::OperateOnCertainResidues::operator= ( OperateOnCertainResidues const & src)

Definition at line 66 of file OperateOnCertainResidues.cc.

References filter_, op_, residue_indices(), and residue_indices_.

void core::pack::task::operation::OperateOnCertainResidues::parse_tag ( TagPtr tag)

virtual

Used to parse an xml-like tag to construct the ResLvlTaskOperation and the ResFilter.

tag parsing for factory construction of this class and its children

Example Tag syntax for parser as of Summer 2009

Reimplemented from core::pack::task::operation::TaskOperation.

Definition at line 138 of file OperateOnCertainResidues.cc.

References core::sequence::end, filter_, core::pack::task::operation::ResFilterFactory::get_instance(), core::pack::task::operation::ResLvlTaskOperationFactory::get_instance(), core::pack::task::operation::ResFilterFactory::has_type(), core::pack::task::operation::ResFilterFactory::newResFilter(), op_, and core::pack::task::operation::TR().

void core::pack::task::operation::OperateOnCertainResidues::residue_indices ( ResidueIndices const & )

supports direct limitation of residues to be affected, without the need for a filter

Referenced by protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::apply(), protocols::toolbox::task_operations::ProteinInterfaceDesignOperation::apply(), protocols::protein_interface_design::movers::LoopRemodel::apply(), and operator=().

ResidueIndices& core::pack::task::operation::OperateOnCertainResidues::residue_indices ( )

inline

Definition at line 67 of file OperateOnCertainResidues.hh.

References residue_indices_.

ResidueIndices const& core::pack::task::operation::OperateOnCertainResidues::residue_indices ( ) const

inline

Definition at line 68 of file OperateOnCertainResidues.hh.

References residue_indices_.

Member Data Documentation

ResFilterOP core::pack::task::operation::OperateOnCertainResidues::filter_

private

Definition at line 82 of file OperateOnCertainResidues.hh.

Referenced by apply(), filter(), operator=(), and parse_tag().

ResLvlTaskOperationOP core::pack::task::operation::OperateOnCertainResidues::op_

private

Definition at line 81 of file OperateOnCertainResidues.hh.

Referenced by apply(), op(), operator=(), and parse_tag().

ResidueIndices core::pack::task::operation::OperateOnCertainResidues::residue_indices_

private

Definition at line 80 of file OperateOnCertainResidues.hh.

Referenced by apply(), operator=(), and residue_indices().

The documentation for this class was generated from the following files:

src/core/pack/task/operation/OperateOnCertainResidues.hh
src/core/pack/task/operation/OperateOnCertainResidues.cc

Public Types

Public Member Functions

Private Attributes

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation