| add_mover(protocols::moves::MoverCOP mover, std::string const mover_name, protocols::filters::FilterOP filter) | protocols::rosetta_scripts::ParsedProtocol | |
| apply(Pose &pose) | protocols::rosetta_scripts::ParsedProtocol | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| apply_filter(Pose &pose, mover_filter_pair const &mover_pair) | protocols::rosetta_scripts::ParsedProtocol | private |
| apply_mover_filter_pair(Pose &pose, mover_filter_pair const &mover_pair) | protocols::rosetta_scripts::ParsedProtocol | private |
| apply_probability(utility::vector1< core::Real > const a) | protocols::rosetta_scripts::ParsedProtocol | |
| apply_probability() | protocols::rosetta_scripts::ParsedProtocol | |
| apply_probability_ | protocols::rosetta_scripts::ParsedProtocol | private |
| begin() | protocols::rosetta_scripts::ParsedProtocol | |
| begin() const | protocols::rosetta_scripts::ParsedProtocol | |
| call_order() const | protocols::rosetta_scripts::ParsedProtocol | inline |
| call_order_ | protocols::rosetta_scripts::ParsedProtocol | private |
| clear() | protocols::rosetta_scripts::ParsedProtocol | inline |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::rosetta_scripts::ParsedProtocol | virtual |
| const_iterator typedef | protocols::rosetta_scripts::ParsedProtocol | |
| create() | protocols::moves::Mover | virtual |
| end() | protocols::rosetta_scripts::ParsedProtocol | |
| end() const | protocols::rosetta_scripts::ParsedProtocol | |
| Filters_map typedef | protocols::moves::Mover | |
| final_score(core::pose::Pose &pose) const | protocols::rosetta_scripts::ParsedProtocol | |
| final_scorefxn(core::scoring::ScoreFunctionCOP scorefxn) | protocols::rosetta_scripts::ParsedProtocol | |
| final_scorefxn() const | protocols::rosetta_scripts::ParsedProtocol | |
| final_scorefxn_ | protocols::rosetta_scripts::ParsedProtocol | private |
| finish_protocol(Pose &pose) | protocols::rosetta_scripts::ParsedProtocol | private |
| fresh_instance() const | protocols::rosetta_scripts::ParsedProtocol | inlinevirtual |
| get_additional_output() | protocols::rosetta_scripts::ParsedProtocol | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_mover(core::Size const mover_number) const | protocols::rosetta_scripts::ParsedProtocol | inline |
| get_name() const | protocols::rosetta_scripts::ParsedProtocol | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_resid() const | protocols::moves::ResId | virtual |
| get_resid() | protocols::moves::ResId | virtual |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| iterator typedef | protocols::rosetta_scripts::ParsedProtocol | |
| last_attempted_mover_idx() | protocols::rosetta_scripts::ParsedProtocol | inline |
| last_attempted_mover_idx(core::Size const s) | protocols::rosetta_scripts::ParsedProtocol | inline |
| last_attempted_mover_idx_ | protocols::rosetta_scripts::ParsedProtocol | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| mode() const | protocols::rosetta_scripts::ParsedProtocol | inline |
| mode_ | protocols::rosetta_scripts::ParsedProtocol | private |
| modifiable() const | protocols::moves::ResId | virtual |
| modifiable(bool const u) | protocols::moves::ResId | virtual |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| mover_filter_pair typedef | protocols::rosetta_scripts::ParsedProtocol | |
| MoverFilterVector typedef | protocols::rosetta_scripts::ParsedProtocol | |
| movers_ | protocols::rosetta_scripts::ParsedProtocol | private |
| name() | protocols::moves::Mover | inlinestatic |
| operator=(Mover const &other) | protocols::moves::Mover | |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(utility::tag::TagPtr const, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &) | protocols::rosetta_scripts::ParsedProtocol | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| ParsedProtocol() | protocols::rosetta_scripts::ParsedProtocol | |
| Pose typedef | protocols::rosetta_scripts::ParsedProtocol | |
| PoseCOP typedef | protocols::moves::Mover | |
| random_order_protocol(Pose &pose) | protocols::rosetta_scripts::ParsedProtocol | private |
| random_single_protocol(Pose &pose) | protocols::rosetta_scripts::ParsedProtocol | private |
| Real typedef | protocols::rosetta_scripts::ParsedProtocol | |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| report_all(Pose const &pose) const | protocols::rosetta_scripts::ParsedProtocol | |
| report_all_sm(std::map< std::string, core::Real > &score_map, Pose const &pose) const | protocols::rosetta_scripts::ParsedProtocol | |
| report_call_order() const | protocols::rosetta_scripts::ParsedProtocol | inline |
| report_call_order(bool const c) | protocols::rosetta_scripts::ParsedProtocol | inline |
| report_call_order_ | protocols::rosetta_scripts::ParsedProtocol | private |
| report_filters_to_job(Pose const &pose) const | protocols::rosetta_scripts::ParsedProtocol | |
| reset_status() | protocols::moves::Mover | |
| ResId() | protocols::moves::ResId | |
| ResId(core::Size const r) | protocols::moves::ResId | |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| sequence_protocol(Pose &pose, utility::vector1< mover_filter_pair >::const_iterator mover_it_in) | protocols::rosetta_scripts::ParsedProtocol | private |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_resid(core::Size const resid) | protocols::rosetta_scripts::ParsedProtocol | virtual |
| size() | protocols::rosetta_scripts::ParsedProtocol | inline |
| Strings typedef | protocols::moves::Mover | |
| TagPtr typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| ~Mover() | protocols::moves::Mover | virtual |
| ~ParsedProtocol() | protocols::rosetta_scripts::ParsedProtocol | virtual |
| ~ResId() | protocols::moves::ResId | virtual |
1.8.4