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protocols::abinitio::PairingStatistics Class Reference

#include <PairingStatistics.hh>

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Public Types

typedef StatEntries::const_iterator const_iterator
 
typedef PairingStatEntry::Model Model
 
typedef std::map< Model,
core::scoring::dssp::StrandPairingSet > 		Topologies
 
typedef std::map< Model,
core::Size > 		ModelFreq
 
typedef utility::vector1
< std::pair< core::Real, Model > > 		ModelWeight
 
typedef std::map< Model,
core::Real > 		Weights
 

Public Member Functions

 PairingStatistics ()
 
virtual ~PairingStatistics ()
 
 PairingStatistics (Templates const &templates)
 
 PairingStatistics (core::scoring::dssp::StrandPairingSet const &topology)
 
void set_native_topology (core::scoring::dssp::StrandPairingSet const &topology)
 
core::scoring::dssp::StrandPairingSet
const & 		get_native_topology () const
 
const_iterator begin () const
 
const_iterator end () const
 
Model ranked_model (Size nr) const
 
core::Size nr_models () const
 
core::Real weight (Size nr) const
 
core::Real weight (Model id) const
 
core::scoring::dssp::StrandPairingSet
const & 		topology (Model id) const
 
core::Real strand_weight (core::scoring::dssp::StrandPairing const &pairing) const
 
core::scoring::dssp::StrandPairingSet
const & 		suggest_topology (std::string &topol_id) const
 
bool is_native_pairing (core::scoring::dssp::StrandPairing const &pairing) const
 
void add_entry (core::scoring::dssp::StrandPairing const &ps, Model const &id)
 
void add_topology (core::scoring::dssp::StrandPairingSet const &topology, Model const &id)
 
void compute_model_weights (ModelFreq &)
 

Static Public Member Functions

static void register_options ()
 

Private Member Functions

void compute (Templates const &templates)
 

Private Attributes

StatEntries entries_
 
Topologies topols_
 
ModelWeight model_weight_
 
core::scoring::dssp::StrandPairingSet native_topology_
 

Friends

std::ostream & operator<< (std::ostream &, PairingStatistics const &ps)
 
std::istream & operator>> (std::istream &is, PairingStatistics &ps)
 

Detailed Description

Definition at line 150 of file PairingStatistics.hh.

Member Typedef Documentation

typedef StatEntries::const_iterator protocols::abinitio::PairingStatistics::const_iterator

Definition at line 152 of file PairingStatistics.hh.

typedef PairingStatEntry::Model protocols::abinitio::PairingStatistics::Model

Definition at line 153 of file PairingStatistics.hh.

typedef std::map< Model, core::Size > protocols::abinitio::PairingStatistics::ModelFreq

Definition at line 155 of file PairingStatistics.hh.

typedef utility::vector1< std::pair< core::Real, Model > > protocols::abinitio::PairingStatistics::ModelWeight

Definition at line 156 of file PairingStatistics.hh.

typedef std::map< Model, core::scoring::dssp::StrandPairingSet > protocols::abinitio::PairingStatistics::Topologies

Definition at line 154 of file PairingStatistics.hh.

typedef std::map< Model, core::Real > protocols::abinitio::PairingStatistics::Weights

Definition at line 157 of file PairingStatistics.hh.

Constructor & Destructor Documentation

protocols::abinitio::PairingStatistics::PairingStatistics ( )
inline

Definition at line 159 of file PairingStatistics.hh.

protocols::abinitio::PairingStatistics::~PairingStatistics ( )
virtual

Definition at line 207 of file PairingStatistics.cc.

protocols::abinitio::PairingStatistics::PairingStatistics ( Templates const &  templates)
inline

Definition at line 162 of file PairingStatistics.hh.

References compute().

protocols::abinitio::PairingStatistics::PairingStatistics ( core::scoring::dssp::StrandPairingSet const &  topology)

Definition at line 200 of file PairingStatistics.cc.

References add_topology(), and compute_model_weights().

Member Function Documentation

void protocols::abinitio::PairingStatistics::add_entry ( core::scoring::dssp::StrandPairing const &  ps,
Model const &  id 
)

Definition at line 149 of file PairingStatistics.cc.

References entries_.

Referenced by add_topology().

void protocols::abinitio::PairingStatistics::add_topology ( core::scoring::dssp::StrandPairingSet const &  topology,
Model const &  id 
)

Definition at line 173 of file PairingStatistics.cc.

References add_entry(), core::scoring::dssp::StrandPairingSet::begin(), core::scoring::dssp::StrandPairingSet::end(), topology(), topols_, and tr().

Referenced by compute(), and PairingStatistics().

const_iterator protocols::abinitio::PairingStatistics::begin ( ) const
inline

Definition at line 176 of file PairingStatistics.hh.

References entries_.

Referenced by protocols::abinitio::StrandConstraints::StrandConstraints().

void protocols::abinitio::PairingStatistics::compute ( Templates const &  templates)
private

Definition at line 185 of file PairingStatistics.cc.

References add_topology(), protocols::abinitio::Templates::begin(), compute_model_weights(), protocols::abinitio::Templates::end(), core::scoring::dssp::StrandPairingSet::get_beta_pairs(), protocols::abinitio::Template::map_pairings2target(), protocols::abinitio::Template::name(), and protocols::abinitio::Template::strand_pairings().

Referenced by PairingStatistics().

void protocols::abinitio::PairingStatistics::compute_model_weights ( ModelFreq &  model_freq)

Definition at line 232 of file PairingStatistics.cc.

References entries_, model_weight_, topols_, and weight().

Referenced by compute(), and PairingStatistics().

const_iterator protocols::abinitio::PairingStatistics::end ( ) const
inline

Definition at line 180 of file PairingStatistics.hh.

References entries_.

Referenced by protocols::abinitio::StrandConstraints::StrandConstraints().

core::scoring::dssp::StrandPairingSet const& protocols::abinitio::PairingStatistics::get_native_topology ( ) const
inline

Definition at line 172 of file PairingStatistics.hh.

References native_topology_.

bool protocols::abinitio::PairingStatistics::is_native_pairing ( core::scoring::dssp::StrandPairing const &  pairing) const
inline

Definition at line 218 of file PairingStatistics.hh.

References core::scoring::dssp::StrandPairingSet::has_pairing(), and native_topology_.

Referenced by protocols::abinitio::operator<<().

core::Size protocols::abinitio::PairingStatistics::nr_models ( ) const
inline

Definition at line 189 of file PairingStatistics.hh.

References model_weight_.

Referenced by suggest_topology().

Model protocols::abinitio::PairingStatistics::ranked_model ( Size  nr) const
inline

Definition at line 184 of file PairingStatistics.hh.

References model_weight_.

Referenced by suggest_topology().

void protocols::abinitio::PairingStatistics::register_options ( )
static

Definition at line 84 of file PairingStatistics.cc.

void protocols::abinitio::PairingStatistics::set_native_topology ( core::scoring::dssp::StrandPairingSet const &  topology)
inline

Definition at line 168 of file PairingStatistics.hh.

References native_topology_, and topology().

core::Real protocols::abinitio::PairingStatistics::strand_weight ( core::scoring::dssp::StrandPairing const &  pairing) const

Definition at line 209 of file PairingStatistics.cc.

References entries_.

Referenced by protocols::abinitio::operator<<().

core::scoring::dssp::StrandPairingSet const & protocols::abinitio::PairingStatistics::suggest_topology ( std::string &  topol_id) const

Definition at line 274 of file PairingStatistics.cc.

References model_weight_, native_topology_, nr_models(), ranked_model(), protocols::abinitio::RG(), topology(), tr(), and weight().

core::scoring::dssp::StrandPairingSet const& protocols::abinitio::PairingStatistics::topology ( Model  id) const
inline

Definition at line 203 of file PairingStatistics.hh.

References topols_.

Referenced by add_topology(), protocols::abinitio::operator<<(), set_native_topology(), and suggest_topology().

core::Real protocols::abinitio::PairingStatistics::weight ( Size  nr) const
inline

Definition at line 193 of file PairingStatistics.hh.

References model_weight_.

Referenced by compute_model_weights(), and suggest_topology().

core::Real protocols::abinitio::PairingStatistics::weight ( Model  id) const

Definition at line 224 of file PairingStatistics.cc.

References model_weight_.

Friends And Related Function Documentation

std::ostream& operator<< ( std::ostream &  ,
PairingStatistics const &  ps 
)
friend

Definition at line 305 of file PairingStatistics.cc.

std::istream& operator>> ( std::istream &  is,
PairingStatistics &  ps 
)
friend

Definition at line 386 of file PairingStatistics.cc.

Member Data Documentation

StatEntries protocols::abinitio::PairingStatistics::entries_
private

Definition at line 233 of file PairingStatistics.hh.

Referenced by add_entry(), begin(), compute_model_weights(), end(), protocols::abinitio::operator>>(), and strand_weight().

ModelWeight protocols::abinitio::PairingStatistics::model_weight_
private

Definition at line 235 of file PairingStatistics.hh.

Referenced by compute_model_weights(), nr_models(), protocols::abinitio::operator<<(), protocols::abinitio::operator>>(), ranked_model(), suggest_topology(), and weight().

core::scoring::dssp::StrandPairingSet protocols::abinitio::PairingStatistics::native_topology_
private

Definition at line 237 of file PairingStatistics.hh.

Referenced by get_native_topology(), is_native_pairing(), set_native_topology(), and suggest_topology().

Topologies protocols::abinitio::PairingStatistics::topols_
private

Definition at line 234 of file PairingStatistics.hh.

Referenced by add_topology(), compute_model_weights(), protocols::abinitio::operator>>(), and topology().

The documentation for this class was generated from the following files:
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