core::sequence::ExtendAlignerSW Class Reference

#include <ExtendAlignerSW.hh>

Inheritance diagram for core::sequence::ExtendAlignerSW:

Collaboration diagram for core::sequence::ExtendAlignerSW:

Public Member Functions
	ExtendAlignerSW ()
	ctor More...
virtual	~ExtendAlignerSW ()
	dtor More...
virtual SequenceAlignment	align (SequenceOP seq_y, SequenceOP seq_x, ScoringSchemeOP ss)
Public Member Functions inherited from core::sequence::Aligner
	Aligner ()
	ctor More...
virtual	~Aligner ()
	dtor More...
void	validate_input (SequenceOP seq_y, SequenceOP seq_x, ScoringSchemeOP ss)
SequenceAlignment	traceback (SequenceOP seq_x, SequenceOP seq_y, DP_Matrix matrix, CellOP start)

Detailed Description

Definition at line 30 of file ExtendAlignerSW.hh.

Constructor & Destructor Documentation

core::sequence::ExtendAlignerSW::ExtendAlignerSW ( )

inline

ctor

Definition at line 35 of file ExtendAlignerSW.hh.

virtual core::sequence::ExtendAlignerSW::~ExtendAlignerSW ( )

inlinevirtual

dtor

Definition at line 38 of file ExtendAlignerSW.hh.

Member Function Documentation

virtual SequenceAlignment core::sequence::ExtendAlignerSW::align ( SequenceOP  seq_y, SequenceOP  seq_x, ScoringSchemeOP  ss  )

virtual

Implements core::sequence::Aligner.

---

The documentation for this class was generated from the following file:

• src/core/sequence/ExtendAlignerSW.hh