protocols::swa::PoseFilter_RMSD_Screen Class Reference

#include <PoseFilter_RMSD_Screen.hh>

Inheritance diagram for protocols::swa::PoseFilter_RMSD_Screen:

Collaboration diagram for protocols::swa::PoseFilter_RMSD_Screen:

Public Member Functions
	PoseFilter_RMSD_Screen (utility::vector1< Size > const calc_rms_res, core::pose::PoseCOP native_pose, core::Real const rmsd_cutoff, bool const force_align=false)
bool	passes_filter (core::pose::Pose &pose)
Public Member Functions inherited from protocols::swa::PoseFilter
	PoseFilter ()
	~PoseFilter ()

Private Member Functions
void	initialize_corresponding_atom_id_map (core::pose::Pose const &pose)

Private Attributes
utility::vector1< Size >	calc_rms_res_
core::pose::PoseCOP	native_pose_
core::Real const	rmsd_cutoff_
bool const	force_align_
bool const	cluster_by_all_atom_rmsd_
std::map< core::id::AtomID, core::id::AtomID >	corresponding_atom_id_map_

Detailed Description

Definition at line 34 of file PoseFilter_RMSD_Screen.hh.

Constructor & Destructor Documentation

protocols::swa::PoseFilter_RMSD_Screen::PoseFilter_RMSD_Screen	(	utility::vector1< Size > const	calc_rms_res,
		core::pose::PoseCOP	native_pose,
		core::Real const	rmsd_cutoff,
		bool const	force_align = false
	)

Definition at line 35 of file PoseFilter_RMSD_Screen.cc.

References initialize_corresponding_atom_id_map().

Member Function Documentation

void protocols::swa::PoseFilter_RMSD_Screen::initialize_corresponding_atom_id_map ( core::pose::Pose const &  pose)

private

Definition at line 79 of file PoseFilter_RMSD_Screen.cc.

References cluster_by_all_atom_rmsd_, corresponding_atom_id_map_, core::scoring::setup_matching_heavy_atoms(), and core::scoring::setup_matching_protein_backbone_heavy_atoms().

Referenced by PoseFilter_RMSD_Screen().

bool protocols::swa::PoseFilter_RMSD_Screen::passes_filter ( core::pose::Pose &  pose)

virtual

Implements protocols::swa::PoseFilter.

Definition at line 50 of file PoseFilter_RMSD_Screen.cc.

References calc_rms_res_, corresponding_atom_id_map_, force_align_, native_pose_, core::scoring::rms_at_corresponding_atoms(), core::scoring::rms_at_corresponding_atoms_no_super(), and rmsd_cutoff_.

Member Data Documentation

utility::vector1< Size > protocols::swa::PoseFilter_RMSD_Screen::calc_rms_res_

private

Definition at line 49 of file PoseFilter_RMSD_Screen.hh.

Referenced by passes_filter().

bool const protocols::swa::PoseFilter_RMSD_Screen::cluster_by_all_atom_rmsd_

private

Definition at line 53 of file PoseFilter_RMSD_Screen.hh.

Referenced by initialize_corresponding_atom_id_map().

std::map< core::id::AtomID, core::id::AtomID > protocols::swa::PoseFilter_RMSD_Screen::corresponding_atom_id_map_

private

Definition at line 55 of file PoseFilter_RMSD_Screen.hh.

Referenced by initialize_corresponding_atom_id_map(), and passes_filter().

bool const protocols::swa::PoseFilter_RMSD_Screen::force_align_

private

Definition at line 52 of file PoseFilter_RMSD_Screen.hh.

Referenced by passes_filter().

core::pose::PoseCOP protocols::swa::PoseFilter_RMSD_Screen::native_pose_

private

Definition at line 50 of file PoseFilter_RMSD_Screen.hh.

Referenced by passes_filter().

core::Real const protocols::swa::PoseFilter_RMSD_Screen::rmsd_cutoff_

private

Definition at line 51 of file PoseFilter_RMSD_Screen.hh.

Referenced by passes_filter().

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The documentation for this class was generated from the following files:

• src/protocols/swa/PoseFilter_RMSD_Screen.hh
• src/protocols/swa/PoseFilter_RMSD_Screen.cc