ProteinCoreResFilter.hh

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// -*- mode:c++;tab-width:2;indent-tabs-mode:t;show-trailing-whitespace:t;rm-trailing-spaces:t -*-
// vi: set ts=2 noet:
//
// (c) Copyright Rosetta Commons Member Institutions.
// (c) This file is part of the Rosetta software suite and is made available under license.
// (c) The Rosetta software is developed by the contributing members of the Rosetta Commons.
// (c) For more information, see http://www.rosettacommons.org. Questions about this can be
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/// @file   protocols/toolbox/task_operations/RestrictResiduesToRepackingOperation.hh
/// @author Gabi Pszolla & Sarel Fleishman

#ifndef INCLUDED_protocols_toolbox_task_operations_ProteinCoreResFilter_hh
#define INCLUDED_protocols_toolbox_task_operations_ProteinCoreResFilter_hh

// Unit Headers

#include <core/pack/task/operation/ResFilter.hh>

// Project Headers
#include <core/pose/Pose.fwd.hh>
#include <utility/tag/Tag.fwd.hh>

// Utility Headers
#include <core/types.hh>

namespace protocols {
namespace toolbox {
namespace task_operations {

class ProteinCore : public core::pack::task::operation::ResFilter {
  public:
    ProteinCore();
    virtual bool operator() ( Pose const &, Size ) const;
    virtual core::pack::task::operation::ResFilterOP clone() const {return (core::pack::task::operation::ResFilterOP( new ProteinCore( *this) ));}
    virtual void parse_tag( TagPtr );
  private:
    core::Real distance_threshold_; // dflt 8.0A; sphere around the residue
    core::Size neighbor_cutoff_; // dflt 10; how many residues in the sequence around the target residue to ignore in computing neighbours
    bool bound_; // dflt false; treat the bound or unbound pose
    core::Size jump_; // dflt 1;
    core::Size neighbor_count_cutoff_; //dflt 6
};
} //namespace protocols
} //namespace toolbox
} //namespace task_operations

#endif // INCLUDED_protocols_toolbox_TaskOperations_ProteinCoreResFilter_HH