| AtomBasedConstraintsScore(Size, Real, bool, Size, utility::vector1< std::string >, std::string) | protocols::frag_picker::scores::AtomBasedConstraintsScore | |
| AtomBasedConstraintsScore(Size, Real, bool, Size, std::string) | protocols::frag_picker::scores::AtomBasedConstraintsScore | |
| cached_score(FragmentCandidateOP, FragmentScoreMapOP) | protocols::frag_picker::scores::RDCScore | virtual |
| protocols::CachingScoringMethod(Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name) | protocols::frag_picker::scores::CachingScoringMethod | inline |
| protocols::frag_picker::scores::CachingScoringMethod::CachingScoringMethod(Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name) | protocols::frag_picker::scores::CachingScoringMethod | inline |
| clean_up() | protocols::frag_picker::scores::RDCScore | virtual |
| clean_up() | protocols::frag_picker::scores::RDCScore | virtual |
| do_caching(VallChunkOP) | protocols::frag_picker::scores::RDCScore | virtual |
| do_caching(VallChunkOP) | protocols::frag_picker::scores::RDCScore | virtual |
| protocols::FragmentScoringMethod(Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name) | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| protocols::frag_picker::scores::CachingScoringMethod::FragmentScoringMethod(Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name) | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_atom_coordinates(Size residue_id, Size atom_id) | protocols::frag_picker::scores::AtomBasedConstraintsScore | inline |
| get_constrainable_atoms_map() | protocols::frag_picker::scores::AtomBasedConstraintsScore | inline |
| get_constrained_atom_id(std::string atom_name) | protocols::frag_picker::scores::AtomBasedConstraintsScore | inline |
| get_constrained_atom_name(Size atom_id) | protocols::frag_picker::scores::AtomBasedConstraintsScore | |
| protocols::get_id() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| protocols::frag_picker::scores::CachingScoringMethod::get_id() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| protocols::get_min_allowed_score() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| protocols::frag_picker::scores::CachingScoringMethod::get_min_allowed_score() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| protocols::get_priority() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| protocols::frag_picker::scores::CachingScoringMethod::get_priority() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_query_size() | protocols::frag_picker::scores::AtomBasedConstraintsScore | inline |
| protocols::get_score_name() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| protocols::frag_picker::scores::CachingScoringMethod::get_score_name() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| protocols::get_use_lowest() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| protocols::frag_picker::scores::CachingScoringMethod::get_use_lowest() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| has_atom(Size residue_id, Size atom_id) | protocols::frag_picker::scores::AtomBasedConstraintsScore | inline |
| protocols::id_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| protocols::frag_picker::scores::CachingScoringMethod::id_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| iprod(const Real a[3], const Real b[3]) const | protocols::frag_picker::scores::RDCScore | inlineprivate |
| jacobi(Real a[5][5], Real d[], Real v[5][5], int *nrot) | protocols::frag_picker::scores::RDCScore | private |
| protocols::lowest_acceptable_value_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| protocols::frag_picker::scores::CachingScoringMethod::lowest_acceptable_value_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| m_inv_gen(Real m[5][5], int n, Real minv[5][5]) | protocols::frag_picker::scores::RDCScore | private |
| mvmul(Real a[3][3], const Real src[3], Real dest[3]) const | protocols::frag_picker::scores::RDCScore | inlineprivate |
| protocols::name_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| protocols::frag_picker::scores::CachingScoringMethod::name_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| protocols::priority_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| protocols::frag_picker::scores::CachingScoringMethod::priority_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| rdc_atom_names_ | protocols::frag_picker::scores::RDCScore | private |
| rdc_atoms() | protocols::frag_picker::scores::RDCScore | private |
| rdc_atoms_ | protocols::frag_picker::scores::RDCScore | private |
| rdc_data_ | protocols::frag_picker::scores::RDCScore | private |
| rdc_file_ | protocols::frag_picker::scores::RDCScore | private |
| rdc_raw_data_ | protocols::frag_picker::scores::RDCScore | private |
| RDCScore(Size, Real, bool) | protocols::frag_picker::scores::RDCScore | |
| RDCScore(Size, Real, bool, Size) | protocols::frag_picker::scores::RDCScore | |
| read_RDC_file(std::string const &, Size) | protocols::frag_picker::scores::RDCScore | private |
| score(FragmentCandidateOP, FragmentScoreMapOP) | protocols::frag_picker::scores::RDCScore | virtual |
| score(FragmentCandidateOP, FragmentScoreMapOP) | protocols::frag_picker::scores::RDCScore | virtual |
| protocols::set_id(Size id) | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| protocols::frag_picker::scores::CachingScoringMethod::set_id(Size id) | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| protocols::set_min_allowed_score(Real lowest_acceptable_value) | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| protocols::frag_picker::scores::CachingScoringMethod::set_min_allowed_score(Real lowest_acceptable_value) | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| sqr(Real x) const | protocols::frag_picker::scores::RDCScore | inlineprivate |
| protocols::use_lowest_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| protocols::frag_picker::scores::CachingScoringMethod::use_lowest_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |