#include <protocols/coarse_rna/CoarseRNA_Fragments.hh>
#include <protocols/toolbox/AllowInsert.hh>
#include <protocols/rna/RNA_ProtocolUtil.hh>
#include <protocols/rna/RNA_SecStructInfo.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/conformation/Residue.hh>
#include <core/id/AtomID.hh>
#include <core/import_pose/import_pose.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/pose/Pose.hh>
#include <core/pose/MiniPose.hh>
#include <core/pose/util.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <core/types.hh>
#include <basic/Tracer.hh>
#include <numeric/random/random.hh>
#include <numeric/xyzVector.hh>
#include <vector>
#include <string>
#include <sstream>
#include <utility/vector1.hh>
#include <utility/io/izstream.hh>
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