#include <ScoreFunctionFeatures.hh>

Inheritance diagram for protocols::features::ScoreFunctionFeatures:

Collaboration diagram for protocols::features::ScoreFunctionFeatures:

Public Member Functions
	ScoreFunctionFeatures ()

	ScoreFunctionFeatures (core::scoring::ScoreFunctionOP scfxn, std::string const &scfxn_name)

	ScoreFunctionFeatures (ScoreFunctionFeatures const &src)

virtual	~ScoreFunctionFeatures ()

std::string	type_name () const
	return string with class name More...

virtual void	write_schema_to_db (utility::sql_database::sessionOP db_session) const
	generate the table schemas and write them to the database More...

utility::vector1< std::string >	features_reporter_dependencies () const
	return the set of features reporters that are required to also already be extracted by the time this one is used. More...

void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)

core::Size	report_features (core::pose::Pose const &pose, utility::vector1< bool > const &relevant_residues, boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session)
	collect all the feature data for the pose More...

void	delete_record (boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session)

void	insert_score_function_weights_rows (core::Size batch_id, utility::sql_database::sessionOP db_session) const

Public Member Functions inherited from protocols::features::FeaturesReporter
virtual	~FeaturesReporter ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...

virtual std::string	schema () const
	return sql statements that sets up the appropriate tables to contain the features. This should be removed once everything has been moved to the schema generator More...

core::Size	report_features (core::pose::Pose const &, boost::uuids::uuid, utility::sql_database::sessionOP)
	collect all the feature data for the pose. More...

virtual void	load_into_pose (utility::sql_database::sessionOP, boost::uuids::uuid, core::pose::Pose &)

Private Member Functions
void	write_score_function_weights_table_schema (utility::sql_database::sessionOP db_session) const
	generate the score_function_weights table schema More...

Private Attributes
core::scoring::ScoreFunctionOP	scfxn_

std::string	scfxn_name_

Additional Inherited Members
Protected Member Functions inherited from protocols::features::FeaturesReporter
std::string	find_tag (core::pose::Pose const &pose) const

void	delete_records_from_table (std::string const &table_name, boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session)
	a helper function for deleting data associated with a given structure from feature database WARNING table_name must be sanitized! More...

Detailed Description

Definition at line 38 of file ScoreFunctionFeatures.hh.

Constructor & Destructor Documentation

protocols::features::ScoreFunctionFeatures::ScoreFunctionFeatures ( )

Definition at line 91 of file ScoreFunctionFeatures.cc.

protocols::features::ScoreFunctionFeatures::ScoreFunctionFeatures	(	core::scoring::ScoreFunctionOP	scfxn,
		std::string const &	scfxn_name
	)

protocols::features::ScoreFunctionFeatures::ScoreFunctionFeatures ( ScoreFunctionFeatures const & src)

Definition at line 108 of file ScoreFunctionFeatures.cc.

protocols::features::ScoreFunctionFeatures::~ScoreFunctionFeatures ( )

virtual

Definition at line 116 of file ScoreFunctionFeatures.cc.

Member Function Documentation

void protocols::features::ScoreFunctionFeatures::delete_record	(	boost::uuids::uuid	struct_id,
		utility::sql_database::sessionOP	db_session
	)

virtual

Reimplemented from protocols::features::FeaturesReporter.

Definition at line 208 of file ScoreFunctionFeatures.cc.

vector1< string > protocols::features::ScoreFunctionFeatures::features_reporter_dependencies ( ) const

virtual

return the set of features reporters that are required to also already be extracted by the time this one is used.

Reimplemented from protocols::features::FeaturesReporter.

Definition at line 163 of file ScoreFunctionFeatures.cc.

void protocols::features::ScoreFunctionFeatures::insert_score_function_weights_rows	(	core::Size	batch_id,
		utility::sql_database::sessionOP	db_session
	)		const

Definition at line 213 of file ScoreFunctionFeatures.cc.

References core::scoring::n_score_types, core::scoring::ScoreTypeManager::name_from_score_type(), scfxn_, and scfxn_name_.

Referenced by report_features().

void protocols::features::ScoreFunctionFeatures::parse_my_tag	(	utility::tag::TagPtr const	tag,
		protocols::moves::DataMap &	data,
		protocols::filters::Filters_map const &	,
		protocols::moves::Movers_map const &	,
		core::pose::Pose const &
	)

virtual

Reimplemented from protocols::features::FeaturesReporter.

Definition at line 171 of file ScoreFunctionFeatures.cc.

References protocols::moves::DataMap::get(), scfxn_, scfxn_name_, and type_name().

Size protocols::features::ScoreFunctionFeatures::report_features	(	core::pose::Pose const &	pose,
		utility::vector1< bool > const &	relevant_residues,
		boost::uuids::uuid	struct_id,
		utility::sql_database::sessionOP	db_session
	)