protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors Class Reference

#include <RestrictToLoopsAndNeighbors.hh>

Inheritance diagram for protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors:

Collaboration diagram for protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors:

Public Types
typedef core::pack::task::operation::TaskOperation	parent
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagPtr	TagPtr
typedef pose::Pose	Pose

Public Member Functions
	RestrictToLoopsAndNeighbors ()
	default constructor More...
	RestrictToLoopsAndNeighbors (RestrictToLoopsAndNeighbors const &src)
	copy constructor More...
virtual	~RestrictToLoopsAndNeighbors ()
RestrictToLoopsAndNeighbors &	operator= (RestrictToLoopsAndNeighbors const &rhs)
	assignment operator More...
virtual core::pack::task::operation::TaskOperationOP	clone () const
	Create another task operation of the type matching the most-derived version of the class. More...
virtual void	apply (core::pose::Pose const &pose, core::pack::task::PackerTask &task) const
	Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
bool	design_loop () const
void	set_design_loop (bool design_loop)
bool	include_neighbors () const
void	set_include_neighbors (bool include_neighbors)
core::Real	cutoff_distance () const
void	set_cutoff_distance (core::Real cutoff_distance)
loops::LoopsCOP	loops () const
void	set_loops (loops::LoopsCOP loops)
Public Member Functions inherited from core::pack::task::operation::TaskOperation
virtual	~TaskOperation ()
virtual void	parse_tag (TagPtr)
	Used to parse an xml-like tag to load parameters and properties. More...
virtual void	parse_def (utility::lua::LuaObject const &def)

Private Member Functions
void	init ()
void	init_for_equal_operator_and_copy_constructor (RestrictToLoopsAndNeighbors &lhs, RestrictToLoopsAndNeighbors const &rhs)

Private Attributes
bool	design_loop_
bool	include_neighbors_
core::Real	cutoff_distance_
loops::LoopsCOP	loops_

Detailed Description

Definition at line 39 of file RestrictToLoopsAndNeighbors.hh.

Member Typedef Documentation

typedef core::pack::task::operation::TaskOperation protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::parent

Definition at line 42 of file RestrictToLoopsAndNeighbors.hh.

Constructor & Destructor Documentation

protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::RestrictToLoopsAndNeighbors

(

)

default constructor

Definition at line 48 of file RestrictToLoopsAndNeighbors.cc.

References init().

Referenced by clone().

protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::RestrictToLoopsAndNeighbors

(

RestrictToLoopsAndNeighbors const &

src)

copy constructor

Definition at line 54 of file RestrictToLoopsAndNeighbors.cc.

References init_for_equal_operator_and_copy_constructor().

protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::~RestrictToLoopsAndNeighbors ( )

virtual

Definition at line 69 of file RestrictToLoopsAndNeighbors.cc.

Member Function Documentation

void protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::apply ( core::pose::Pose const &  , core::pack::task::PackerTask &    ) const

virtual

Change a packer task in some way. The input pose is the one to which the input task will be later applied.

Implements core::pack::task::operation::TaskOperation.

Definition at line 83 of file RestrictToLoopsAndNeighbors.cc.

References core::pack::task::operation::RestrictResidueToRepacking::apply(), core::pack::task::operation::PreventRepacking::apply(), cutoff_distance(), design_loop(), include_neighbors(), core::pack::task::operation::RestrictResidueToRepacking::include_residue(), core::pack::task::operation::PreventRepacking::include_residue(), loops(), core::pose::symmetry::make_residue_mask_symmetric(), protocols::loops::select_loop_residues(), and core::pose::Pose::total_residue().

TaskOperationOP protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::clone ( ) const

virtual

Create another task operation of the type matching the most-derived version of the class.

Implements core::pack::task::operation::TaskOperation.

Definition at line 73 of file RestrictToLoopsAndNeighbors.cc.

References RestrictToLoopsAndNeighbors().

core::Real protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::cutoff_distance

(

)

const

Definition at line 156 of file RestrictToLoopsAndNeighbors.cc.

References cutoff_distance_.

Referenced by apply(), and set_cutoff_distance().

bool protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::design_loop

(

)

const

Definition at line 136 of file RestrictToLoopsAndNeighbors.cc.

References design_loop_.

Referenced by apply(), and set_design_loop().

bool protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::include_neighbors

(

)

const

Definition at line 146 of file RestrictToLoopsAndNeighbors.cc.

References include_neighbors_.

Referenced by apply(), and set_include_neighbors().

void protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::init ( void  )

private

Definition at line 119 of file RestrictToLoopsAndNeighbors.cc.

References set_cutoff_distance(), set_design_loop(), set_include_neighbors(), and set_loops().

Referenced by RestrictToLoopsAndNeighbors().

void protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::init_for_equal_operator_and_copy_constructor ( RestrictToLoopsAndNeighbors &  lhs, RestrictToLoopsAndNeighbors const &  rhs  )

private

Definition at line 127 of file RestrictToLoopsAndNeighbors.cc.

References cutoff_distance_, design_loop_, include_neighbors_, and loops_.

Referenced by operator=(), and RestrictToLoopsAndNeighbors().

loops::LoopsCOP protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::loops

(

)

const

Definition at line 169 of file RestrictToLoopsAndNeighbors.cc.

References loops_.

Referenced by apply(), and set_loops().

RestrictToLoopsAndNeighbors & protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::operator=

(

RestrictToLoopsAndNeighbors const &

rhs)

assignment operator

Definition at line 60 of file RestrictToLoopsAndNeighbors.cc.

References init_for_equal_operator_and_copy_constructor().

void protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::set_cutoff_distance

(

core::Real

cutoff_distance)

Definition at line 161 of file RestrictToLoopsAndNeighbors.cc.

References cutoff_distance(), and cutoff_distance_.

Referenced by init().

void protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::set_design_loop

(

bool

design_loop)

Definition at line 141 of file RestrictToLoopsAndNeighbors.cc.

References design_loop(), and design_loop_.

Referenced by init().

void protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::set_include_neighbors

(

bool

include_neighbors)

Definition at line 151 of file RestrictToLoopsAndNeighbors.cc.

References include_neighbors(), and include_neighbors_.

Referenced by init().

void protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::set_loops

(

loops::LoopsCOP

loops)

Definition at line 174 of file RestrictToLoopsAndNeighbors.cc.

References loops(), and loops_.

Referenced by init().

Member Data Documentation

core::Real protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::cutoff_distance_

private

Definition at line 81 of file RestrictToLoopsAndNeighbors.hh.

Referenced by cutoff_distance(), init_for_equal_operator_and_copy_constructor(), and set_cutoff_distance().

bool protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::design_loop_

private

Definition at line 79 of file RestrictToLoopsAndNeighbors.hh.

Referenced by design_loop(), init_for_equal_operator_and_copy_constructor(), and set_design_loop().

bool protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::include_neighbors_

private

Definition at line 80 of file RestrictToLoopsAndNeighbors.hh.

Referenced by include_neighbors(), init_for_equal_operator_and_copy_constructor(), and set_include_neighbors().

loops::LoopsCOP protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::loops_

private

Definition at line 82 of file RestrictToLoopsAndNeighbors.hh.

Referenced by init_for_equal_operator_and_copy_constructor(), loops(), and set_loops().

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The documentation for this class was generated from the following files:

• src/protocols/toolbox/task_operations/RestrictToLoopsAndNeighbors.hh
• src/protocols/toolbox/task_operations/RestrictToLoopsAndNeighbors.cc