core::fragment::picking_old::vall::eval::VallFragmentEval Class Reference

base class for Vall ExtentEvaluator More...

#include <VallFragmentEval.hh>

Inheritance diagram for core::fragment::picking_old::vall::eval::VallFragmentEval:

Collaboration diagram for core::fragment::picking_old::vall::eval::VallFragmentEval:

Public Types
typedef core::fragment::picking_old::vall::scores::VallFragmentScore	VallFragmentScore
typedef VallFragmentScore::PageConstIterator	PageConstIterator
	typedef for ExtentEvaluator concept More...
typedef core::fragment::picking_old::concepts::Extent < VallSection::PageConstIterator >	Extent
	typedef for ExtentEvaluator concept More...
typedef PageConstIterator	VallResidueConstIterator

Public Member Functions
	VallFragmentEval ()
	default constructor More...
	VallFragmentEval (VallFragmentEval const &rval)
	default copy constructor More...
virtual	~VallFragmentEval ()
	default destructor More...
VallFragmentEval &	operator= (VallFragmentEval const &rval)
	copy assignment More...
virtual VallFragmentEvalOP	clone () const =0
	clone this object More...
bool	operator() (Extent const &extent, VallFragmentScore &fs)
	called by VallLibrarian: for a fragment extent, evaluate and store results in a VallFragmentScore More...
virtual bool	eval_impl (Extent const &extent, VallFragmentScore &fs)=0
	do the actual work of fragment evaluation More...
virtual void	pre_catalog_op (VallLibrary const &)
	operation to be perform before catalog() starts More...
virtual void	post_catalog_op (VallLibrary const &)
	operation to be performed after catalog() finished More...

Private Types
typedef utility::pointer::ReferenceCount	Super

Detailed Description

base class for Vall ExtentEvaluator

Definition at line 43 of file VallFragmentEval.hh.

Member Typedef Documentation

typedef core::fragment::picking_old::concepts::Extent< VallSection::PageConstIterator > core::fragment::picking_old::vall::eval::VallFragmentEval::Extent

typedef for ExtentEvaluator concept

Definition at line 66 of file VallFragmentEval.hh.

typedef VallFragmentScore::PageConstIterator core::fragment::picking_old::vall::eval::VallFragmentEval::PageConstIterator

typedef for ExtentEvaluator concept

Definition at line 62 of file VallFragmentEval.hh.

typedef utility::pointer::ReferenceCount core::fragment::picking_old::vall::eval::VallFragmentEval::Super

private

Definition at line 49 of file VallFragmentEval.hh.

typedef core::fragment::picking_old::vall::scores::VallFragmentScore core::fragment::picking_old::vall::eval::VallFragmentEval::VallFragmentScore

Definition at line 55 of file VallFragmentEval.hh.

typedef PageConstIterator core::fragment::picking_old::vall::eval::VallFragmentEval::VallResidueConstIterator

Definition at line 72 of file VallFragmentEval.hh.

Constructor & Destructor Documentation

core::fragment::picking_old::vall::eval::VallFragmentEval::VallFragmentEval

(

)

default constructor

Definition at line 33 of file VallFragmentEval.cc.

core::fragment::picking_old::vall::eval::VallFragmentEval::VallFragmentEval

(

VallFragmentEval const &

rval)

default copy constructor

Definition at line 39 of file VallFragmentEval.cc.

core::fragment::picking_old::vall::eval::VallFragmentEval::~VallFragmentEval ( )

virtual

default destructor

Definition at line 45 of file VallFragmentEval.cc.

Member Function Documentation

virtual VallFragmentEvalOP core::fragment::picking_old::vall::eval::VallFragmentEval::clone ( ) const

pure virtual

clone this object

Implemented in core::fragment::picking_old::vall::eval::EnergyEval, core::fragment::picking_old::vall::eval::IdentityEval, and core::fragment::picking_old::vall::eval::ABEGOEval.

virtual bool core::fragment::picking_old::vall::eval::VallFragmentEval::eval_impl ( Extent const &  extent, VallFragmentScore &  fs  )

pure virtual

do the actual work of fragment evaluation

Returns

true if score should be stored, false otherwise

Implemented in core::fragment::picking_old::vall::eval::EnergyEval, core::fragment::picking_old::vall::eval::IdentityEval, and core::fragment::picking_old::vall::eval::ABEGOEval.

Referenced by operator()().

bool core::fragment::picking_old::vall::eval::VallFragmentEval::operator()	(	Extent const &	extent,
		VallFragmentScore &	fs
	)

called by VallLibrarian: for a fragment extent, evaluate and store results in a VallFragmentScore

Returns

true if score should be stored, false otherwise

Definition at line 61 of file VallFragmentEval.cc.

References core::fragment::picking_old::concepts::Extent< PageIterator >::begin, core::fragment::picking_old::concepts::Extent< PageIterator >::end, eval_impl(), core::fragment::picking_old::vall::scores::VallFragmentScore::extent_begin, and core::fragment::picking_old::vall::scores::VallFragmentScore::extent_end.

VallFragmentEval & core::fragment::picking_old::vall::eval::VallFragmentEval::operator=

(

VallFragmentEval const &

rval)

copy assignment

Definition at line 50 of file VallFragmentEval.cc.

Referenced by core::fragment::picking_old::vall::eval::ABEGOEval::operator=(), core::fragment::picking_old::vall::eval::IdentityEval::operator=(), and core::fragment::picking_old::vall::eval::EnergyEval::operator=().

virtual void core::fragment::picking_old::vall::eval::VallFragmentEval::post_catalog_op ( VallLibrary const &  )

inlinevirtual

operation to be performed after catalog() finished

Definition at line 141 of file VallFragmentEval.hh.

virtual void core::fragment::picking_old::vall::eval::VallFragmentEval::pre_catalog_op ( VallLibrary const &  )

inlinevirtual

operation to be perform before catalog() starts

Reimplemented in core::fragment::picking_old::vall::eval::EnergyEval, core::fragment::picking_old::vall::eval::IdentityEval, and core::fragment::picking_old::vall::eval::ABEGOEval.

Definition at line 135 of file VallFragmentEval.hh.

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The documentation for this class was generated from the following files:

• src/core/fragment/picking_old/vall/eval/VallFragmentEval.hh
• src/core/fragment/picking_old/vall/eval/VallFragmentEval.cc