DsspMover.cc

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// -*- mode:c++;tab-width:2;indent-tabs-mode:t;show-trailing-whitespace:t;rm-trailing-spaces:t -*-
// vi: set ts=2 noet:
//
// (c) Copyright Rosetta Commons Member Institutions.
// (c) This file is part of the Rosetta software suite and is made available under license.
// (c) The Rosetta software is developed by the contributing members of the Rosetta Commons.
// (c) For more information, see http://www.rosettacommons.org. Questions about this can be
// (c) addressed to University of Washington UW TechTransfer, email: license@u.washington.edu.

/// @file ./protocols/moves/DsspMover.cc
/// @brief performs dssp and set secondary structure to pose
/// @author Nobuyasu Koga ( nobuyasu@uw.edu )

// Unit headers
#include <protocols/moves/DsspMover.hh>
#include <protocols/moves/DsspMoverCreator.hh>

// Project Headers
#include <core/scoring/dssp/Dssp.hh>
// AUTO-REMOVED #include <core/pose/Pose.hh>
#include <protocols/moves/Mover.hh>
#include <basic/Tracer.hh>

// Parser headers
// AUTO-REMOVED #include <protocols/moves/DataMap.hh>
// AUTO-REMOVED #include <protocols/filters/Filter.hh>
// AUTO-REMOVED #include <utility/tag/Tag.hh>  // REQUIRED FOR WINDOWS

//
#include <string>

#include <utility/vector0.hh>
#include <utility/vector1.hh>


static basic::Tracer TR( "protocols.DsspMover" );

namespace protocols {
namespace moves {

std::string
DsspMoverCreator::keyname() const
{
  return DsspMoverCreator::mover_name();
}

protocols::moves::MoverOP
DsspMoverCreator::create_mover() const {
  return new DsspMover;
}

std::string
DsspMoverCreator::mover_name()
{
  return "Dssp";
}

DsspMover::DsspMover():
  Mover( DsspMoverCreator::mover_name() )
{}

DsspMover::~DsspMover()
{}

/// @brief clone this object
DsspMover::MoverOP DsspMover::clone() const {
  return new DsspMover( *this );
}

/// @brief create this type of object
DsspMover::MoverOP DsspMover::fresh_instance() const {
  return new DsspMover();
}

/// @details virtual main
void DsspMover::apply( Pose & pose )
{
  core::scoring::dssp::Dssp dssp( pose );
  dssp.insert_ss_into_pose( pose );
  TR << dssp.get_dssp_secstruct() << std::endl;
}

std::string
DsspMover::get_name() const {
  return DsspMoverCreator::mover_name();
}

/// @brief parse xml
void
DsspMover::parse_my_tag(
  TagPtr const,
  DataMap &,
  Filters_map const &,
  Movers_map const &,
  Pose const & )
{
  TR << "DsspMover loaded." << std::endl;
}

}  // namespace moves
}  // namespace protocols