protocols::coarse_rna Namespace Reference

Classes
class	CoarseRNA_DeNovoProtocol
	The RNA de novo structure modeling protocol. More...
class	SourcePositions
class	CoarseRNA_Fragments
class	CoarseRNA_LoopCloser
	The RNA de novo structure modeling protocol. More...

Typedefs
typedef std::pair< std::string, std::string >	SequenceSecStructPair
typedef utility::pointer::owning_ptr < SourcePositions >	SourcePositionsOP
typedef utility::pointer::owning_ptr < CoarseRNA_LoopCloser >	CoarseRNA_LoopCloserOP
typedef utility::pointer::owning_ptr < RNA_AnalyticLoopCloser >	RNA_AnalyticLoopCloserOP

Functions
static numeric::random::RandomGenerator	RG (129920)
static basic::Tracer	TR ("protocols.coarse_rna.coarse_rna_denovo_protocol")

Typedef Documentation

typedef utility::pointer::owning_ptr< CoarseRNA_LoopCloser > protocols::coarse_rna::CoarseRNA_LoopCloserOP

Definition at line 23 of file CoarseRNA_LoopCloser.fwd.hh.

typedef utility::pointer::owning_ptr< RNA_AnalyticLoopCloser > protocols::coarse_rna::RNA_AnalyticLoopCloserOP

Definition at line 25 of file RNA_AnalyticLoopCloser.fwd.hh.

typedef std::pair< std::string, std::string > protocols::coarse_rna::SequenceSecStructPair

Definition at line 43 of file CoarseRNA_Fragments.hh.

typedef utility::pointer::owning_ptr< SourcePositions > protocols::coarse_rna::SourcePositionsOP

Definition at line 61 of file CoarseRNA_Fragments.hh.

Function Documentation

static numeric::random::RandomGenerator protocols::coarse_rna::RG ( 129920  )

static

Referenced by protocols::coarse_rna::CoarseRNA_LoopCloser::apply_solutions(), protocols::coarse_rna::CoarseRNA_LoopCloser::figure_out_pivot_res_and_scratch_res(), and protocols::coarse_rna::CoarseRNA_Fragments::pick_random_fragment().

static basic::Tracer protocols::coarse_rna::TR ( "protocols.coarse_rna.coarse_rna_denovo_protocol"  )

static

Referenced by protocols::coarse_rna::CoarseRNA_LoopCloser::apply(), protocols::coarse_rna::CoarseRNA_LoopCloser::apply_after_jump_change(), protocols::coarse_rna::CoarseRNA_LoopCloser::close_at_all_cutpoints(), protocols::coarse_rna::CoarseRNA_LoopCloser::close_the_loop(), and protocols::coarse_rna::CoarseRNA_LoopCloser::figure_out_pivot_res_and_scratch_res().